ID:

dwi_243

 Coordinate:

scf2_1100000001617:3042-3098 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dwil_GLEANR_4412:1]; CDS [Dwil\GK21307-cds]; CDS [Dwil\GK21307-cds]; exon [dwil_GLEANR_4412:2]; intron [Dwil\GK21307-in]

No Repeatable elements found

Sense Strand Reads

-------------------------#########################---------------------------------------------------------##################################################
CTTTGTTGGCGGTTCCTCAAAAATTATGGATAAGTTTGTGATTTCATCAAGTAAGTGTTTCCAAGCTAATTTTTTCTTATTTGTTCATAATTGTTTTTGTATTTTAGATAAAAGTGCATCATCAGCTGCCTCAACATCTTCAGCTGCCTCATCGATA
**************************************************...(((........)))........................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
....................................................................................................................................AACATCTTCAGCTGCCTCATCGA.. 23 0 7 0.43 3 3 0
..................................................................................................................TGCATCATCAGCTGCCTCAACATCTT................. 26 0 6 0.33 2 2 0
......................................................................................................................TCATCAGCTGCCTCAACATCTTCAGC............. 26 0 6 0.33 2 2 0
....................................................................................................................................AACATCTTCAGCTGCCTCATCGATA 25 0 7 0.29 2 2 0
...............................AAGTTTGTGATTTCATCAAGTAAGTGT................................................................................................... 27 0 7 0.29 2 2 0
..............................................................................................................................TGCCTCAACATCTTCAGCTGCCTC....... 24 0 7 0.29 2 2 0
......................................................................................................................TCATCAGCTGCCTCAACATCTTCAG.............. 25 0 6 0.17 1 1 0
......................................................................................................TTTAGATAAAAGTGCATCATCAGC............................... 24 0 6 0.17 1 0 1
.........................................................................................................AGATAAAAGTGCATCATCAGC............................... 21 0 6 0.17 1 1 0
......................................................................................................TTTAGATAAAAGTGCATCATCAGCTG............................. 26 0 6 0.17 1 1 0
..........................................................................................................................CACCTGCCTCAACATCTTCAGCT............ 23 1 6 0.17 1 1 0
..................................................................................................................TGCATCATCAGCTGCCTCAACATCTTC................ 27 0 6 0.17 1 1 0
............................................................................................................TAAAAGTGCATCATCAGCTGCCTCAACA..................... 28 0 6 0.17 1 1 0
...................................................................................................................................CAACATCTTCAGCTGCCTCATCGA.. 24 0 7 0.14 1 1 0
........................TATGGATAAGTTTGTGATTTC................................................................................................................ 21 0 7 0.14 1 1 0
.....................AATTATGGATAAGTTTGTGA.................................................................................................................... 20 0 7 0.14 1 0 1
................TCAAAAATTATGGATAAGTTTGTGATT.................................................................................................................. 27 0 7 0.14 1 0 1
..................................................................................................................................TCAACATCTTCAGCTGCCTC....... 20 0 7 0.14 1 1 0
............................................................................................................................GCTGCCTCAACATCTTCAGCTGCC......... 24 0 7 0.14 1 1 0
............................................................................................................................TCTGCCTCAACATCTTCAGCTGCCT........ 25 1 7 0.14 1 1 0
...............................AAGTTTGTGATTTCATCAAGTAAG...................................................................................................... 24 0 7 0.14 1 1 0
.................................................................................................................................CTCAACATCTTCAGCTGCCTC....... 21 0 7 0.14 1 1 0
..........................TGGATAAGTTTGTGATTTCATCAA........................................................................................................... 24 0 7 0.14 1 1 0
..............................................................................................................................TGCCTCAACATCTTCAGCTGCCTCA...... 25 0 7 0.14 1 1 0
......................ATTATGGATAAGTTTGTGATTTCA............................................................................................................... 24 0 7 0.14 1 1 0
.................................................................................................................................CTCAACATCTTCAGCTGCCTCAT..... 23 0 7 0.14 1 1 0
....................................................................................................................................AACATCTTCAGCTGCCTCATCGAT. 24 0 7 0.14 1 1 0
........................TATGGATAAGTTTGTGATTTCATCAAA.......................................................................................................... 27 1 7 0.14 1 0 1

Anti-sense strand reads

GAAACAACCGCCAAGGAGTTTTTAATACCTATTCAAACACTAAAGTAGTTCATTCACAAAGGTTCGATTAAAAAAGAATAAACAAGTATTAACAAAAACATAAAATCTATTTTCACGTAGTAGTCGACGGAGTTGTAGAAGTCGACGGAGTAGCTAT
**************************************************...(((........)))........................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body		 V119
head
..............GGAGTTTTTAATACCTATTCAAACACT.................................................................................................................... 27 0 7 1.86 13 13 0 0 0
.....................................................TCACAAAGGTTCGATTAAAAAAGAAT.............................................................................. 26 0 7 1.57 11 8 3 0 0
.............AGGAGTTTTTAATACCTATTCAAACACT.................................................................................................................... 28 0 7 1.00 7 6 1 0 0
.........................................AAAGTAGTTCATTCACAAAGGTTCGAT......................................................................................... 27 0 7 0.86 6 6 0 0 0
...............................................................TCGATTAAAAAAGAATAAACAAGTAT.................................................................... 26 0 7 0.86 6 5 1 0 0
..........................................................................................................CTATTTTCACGTAGTAGTCGACGGAGT........................ 27 0 6 0.83 5 4 1 0 0
.......CCGCCAAGGAGTTTTTAATACCTAT............................................................................................................................. 25 0 7 0.71 5 4 1 0 0
....................................................................................................................GTAGTAGTCGACGGAGTTGTAGAAGT............... 26 0 6 0.67 4 3 1 0 0
.....................................................................................................................TAGTAGTCGACGGAGTTGTAGAAGT............... 25 0 6 0.67 4 0 4 0 0
.......................................................................................................................GTAGTCGACGGAGTTGTAGAAGT............... 23 0 6 0.67 4 2 2 0 0
..........................ACCTATTCAAACACTAAAGTAGTTCAT........................................................................................................ 27 0 7 0.57 4 4 0 0 0
......ACCGCCAAGGAGTTTTTAATACCTAT............................................................................................................................. 26 0 7 0.57 4 2 2 0 0
...................................................................................................................................GTTGTAGAAGTCGACGGAGTAGCTAT 26 0 7 0.57 4 2 1 1 0
.....................................................................................................AAAATCTATTTTCACGTAGTAGTCGAC............................. 27 0 6 0.50 3 3 0 0 0
......................................................................................................................AGTAGTCGACGGAGTTGTAGAAGT............... 24 0 6 0.50 3 1 2 0 0
............................................................................................................ATTTTCACGTAGTAGTCGACGGAGT........................ 25 0 6 0.50 3 3 0 0 0
......................................ACTAAAGTAGTTCATTCACAAAGGT.............................................................................................. 25 0 7 0.43 3 3 0 0 0
......................................................................................................................................GTAGAAGTCGACGGAGTAGCTAT 23 0 7 0.43 3 1 2 0 0
...............................................................................................AAACATAAAATCTATTTTCACGTAGTAGT................................. 29 0 6 0.33 2 2 0 0 0
.................................................................................................ACATAAAATCTATTTTCACGTAGTAGT................................. 27 0 6 0.33 2 2 0 0 0
.....................................................................................................AAAATCTATTTTCACGTAGTAGTCGA.............................. 26 0 6 0.33 2 2 0 0 0
....................................................................................................................................TTGTAGAAGTCGACGGAGTAGCTAT 25 0 7 0.29 2 2 0 0 0
..............GGAGTTTTTAATACCTATTCAAACAC..................................................................................................................... 26 0 7 0.29 2 2 0 0 0
....................................ACACTAAAGTAGTTCATTCACAAAGGT.............................................................................................. 27 0 7 0.29 2 2 0 0 0
...................................................................................................................ATTAGTAGTCGACGGAGTTGTAGAAGT............... 27 2 6 0.17 1 1 0 0 0
..................................................................................................................GAATAGTAGTCGACGGAGTTGTAGAAGT............... 28 3 6 0.17 1 0 0 1 0
...................................................................................................................TTTAGTAGTCGACGGAGTTGTAGAAGT............... 27 2 6 0.17 1 0 0 1 0
..........................................................................................................CTATTTTCACGTAGTAGTCGAC............................. 22 0 6 0.17 1 1 0 0 0
..............................................................................................................TTTCACGTAGTAGTCGACGGAGTTGT..................... 26 0 6 0.17 1 0 1 0 0
..............................................................................................................TTTCACGTAGTAGTCGACGGAGT........................ 23 0 6 0.17 1 0 1 0 0
..................................................................................................................ACGTAGTAGTCGACGGAGT........................ 19 0 6 0.17 1 0 1 0 0
...................................................................................................................GATAGTAGTCGACGGAGTTGTAGAAGT............... 27 2 6 0.17 1 0 0 1 0
......................................................................................................................AGTAGTCGACGGAGTTGTAGAAGTCGA............ 27 0 6 0.17 1 1 0 0 0
....................................................................................................................TTAGTAGTCGACGGAGTTGTAGAAGT............... 26 1 6 0.17 1 0 1 0 0
.....................................................................................................AAAATCTATTTTCACGTAGTAGTCGACGG........................... 29 0 6 0.17 1 1 0 0 0
...........................................................................................................TATTTTCACGTAGTAGTCGACGGAGT........................ 26 0 6 0.17 1 0 1 0 0
...................................................................................................................GTTAGTAGTCGACGGAGTTGTAGAAGT............... 27 2 6 0.17 1 1 0 0 0
...............................................................................................AAACATAAAATCTATTTTCACGTAGTAG.................................. 28 0 6 0.17 1 1 0 0 0
....................................................................................................................TTAGTAGTCGACGGAGTTGTAGAAG................ 25 1 6 0.17 1 0 1 0 0
...............................................................................................................................CGGACTTGTGGAAGTCGA............ 18 2 13 0.15 2 2 0 0 0
.....................................................................................................................................TGTAGAAGTCGACGGAGTAGCTAT 24 0 7 0.14 1 1 0 0 0
.............................................................................................................................GACGGAGTTGTAGAAGTCGACGGAGT...... 26 0 7 0.14 1 0 1 0 0
...............GAGTTTTTAATACCTATTCAAACACT.................................................................................................................... 26 0 7 0.14 1 1 0 0 0
...........................CCTATTCAAACACTAAAGTAGTTCAT........................................................................................................ 26 0 7 0.14 1 1 0 0 0
.........................................AAAGTAGTTCATTCACAAAGGTTCGA.......................................................................................... 26 0 7 0.14 1 1 0 0 0
...........................................................AGGTTCGATTAAAAAAGAATAAACAAGT...................................................................... 28 0 7 0.14 1 0 1 0 0
........................................AAAAGTAGTTCATTCACAAAGGTTCGAT......................................................................................... 28 1 7 0.14 1 1 0 0 0
.................GTTTTTAATACCTATTCAAACACT.................................................................................................................... 24 0 7 0.14 1 1 0 0 0
.......CCGCCAAGGAGTTTTTAA.................................................................................................................................... 18 0 7 0.14 1 0 1 0 0
.......................................................................................ATTAACAAAAACATAAAATCTATTT............................................. 25 0 7 0.14 1 1 0 0 0
................................TCAAACACTAAAGTAGTTCATTCAC.................................................................................................... 25 0 7 0.14 1 1 0 0 0
........................................TAAAGTAGTTCATTCACAAAGGTTCGAT......................................................................................... 28 0 7 0.14 1 1 0 0 0
........CGCCAAGGAGTTTTTAATACCTATTCAA......................................................................................................................... 28 0 7 0.14 1 0 1 0 0
...........................................AGTAGTTCATTCACAAAGGTTCGAT......................................................................................... 25 0 7 0.14 1 1 0 0 0
..........................................................................AGAATAAACAAGTATTAACAAAAACAT........................................................ 27 0 7 0.14 1 1 0 0 0
.............................................................................................................................ATCGGAGTTGTAGAAGTCGACGGAGT...... 26 2 7 0.14 1 0 1 0 0
....................................................................................................................................TTGTAGAAGTCGACGGAGTAGCTA. 24 0 7 0.14 1 1 0 0 0
...................................................................................................................................GTTGTAGAAGTCGACGGAGTAGCTA. 25 0 7 0.14 1 0 1 0 0
...............................................................................AAACAAGTATTAACAAAAACATAAAAT................................................... 27 0 7 0.14 1 1 0 0 0
..AACAACCGCCAAGGAGTTTTTAATACCT............................................................................................................................... 28 0 7 0.14 1 1 0 0 0
......................................................CACAAAGGTTCGATTAAAAAAGAAT.............................................................................. 25 0 7 0.14 1 1 0 0 0
..............................................AGTTCATTCACAAAGGTTCGATTAAAA.................................................................................... 27 0 7 0.14 1 1 0 0 0
.....AACCGCCAAGGAGTTTTTAATACCT............................................................................................................................... 25 0 7 0.14 1 1 0 0 0
..................................................................................................................................AGTTGTAGAAGTCGACGGAGTAGCT.. 25 0 7 0.14 1 0 1 0 0
........CGCCAAGGAGTTTTTAATACCTAT............................................................................................................................. 24 0 7 0.14 1 1 0 0 0
.........................................AAAGTAGTTCATTCACAAAGCT.............................................................................................. 22 1 7 0.14 1 1 0 0 0
...............................................................TCGATTAAAAAAGAGTAAACAAGTAT.................................................................... 26 1 7 0.14 1 1 0 0 0
...................................................................................................................................GTTGTAGAAGTCGACGGAGTAGCTAG 26 1 7 0.14 1 0 1 0 0
............AAGGAGTTTTTAATACCTATTCAAACAC..................................................................................................................... 28 0 7 0.14 1 1 0 0 0
..............................ATTCAAACACTAAAGTAGTTCATTCACA................................................................................................... 28 0 7 0.14 1 1 0 0 0
...ACAACCGCCAAGGAGTTTTTAATACCTAT............................................................................................................................. 29 0 7 0.14 1 1 0 0 0
.................................................TCATTCACAAAGGTTCGATTAAAA.................................................................................... 24 0 7 0.14 1 1 0 0 0
.....................................................TCACAAAGGTTCGATTAAAAAAGAA............................................................................... 25 0 7 0.14 1 1 0 0 0
.............AGGAGTTTTTAATACCTATTC........................................................................................................................... 21 0 7 0.14 1 1 0 0 0
...............................................................................................................................CGGAGTTGTAGAAGTCGACGGAGT...... 24 0 7 0.14 1 0 1 0 0
..............GAAGTTTTTAATACCTATTCAAACACT.................................................................................................................... 27 1 7 0.14 1 1 0 0 0
..........................................AAGTAGTTCATTCACAAAGGTTCGAT......................................................................................... 26 0 7 0.14 1 1 0 0 0
..............................ATTCAAACACTAAAGTAGTTCATTCAC.................................................................................................... 27 0 7 0.14 1 1 0 0 0
................................................................................AACAAGTATTAACAAAAACATAAAATCT................................................. 28 0 7 0.14 1 1 0 0 0
.........................................AAAGTAGTTCATTCACAAAGGT.............................................................................................. 22 0 7 0.14 1 1 0 0 0
..............................................AGTTCATTCACAAAGGTTCGATTAAA..................................................................................... 26 0 7 0.14 1 1 0 0 0
.....................................................TCACAAAGGTTCGATTAA...................................................................................... 18 0 7 0.14 1 1 0 0 0
..............GGAGTTTTTAATACCTATTC........................................................................................................................... 20 0 7 0.14 1 1 0 0 0
..............................ATTCAAACACTAAAGTAGTTCATTCACAA.................................................................................................. 29 0 7 0.14 1 1 0 0 0
......................TAATACCTATTCAAACACTAAAGTAGT............................................................................................................ 27 0 7 0.14 1 1 0 0 0
...................................................................................................................................TTTGTAGAAGTCGACGGAGTAGCTAT 26 1 7 0.14 1 0 1 0 0
............................................GTAGTTCATTCACAAAGGTTCGAT......................................................................................... 24 0 7 0.14 1 1 0 0 0
..............GGAGTTTTTAATACCTATT............................................................................................................................ 19 0 7 0.14 1 1 0 0 0
........................ATACCTATTCAAACACTAAAAG............................................................................................................... 22 2 7 0.14 1 1 0 0 0
........................................AAAAGTAGTTCATTCACAAAGGTTCGA.......................................................................................... 27 1 7 0.14 1 1 0 0 0
............................................GTAGTTCATTCACAAAGGTTCGATTA....................................................................................... 26 0 7 0.14 1 0 0 0 1
........................................................................................................................................AGAAGTGGACAGAGTAGC... 18 2 19 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000001617:2992-3148 - dwi_243 CTT--TGTTG-GC----GGTTCCTC-AAAAAT----TATGGATAAGTTTGTGATTTCATCAAGTAA------------------GT---------------------GTTTCCA---------------------------AGCTAATTTTTTCTTA-------TTTGTTCATAATTGTTTTTGTAT----------------------------------------------TTTAGATAAAAGTGCATCATCAGCTGCCT--------------------CAACATC--TTCA----G-----CTGCCTCATCGATA
droMoj3 scaffold_6540:4380341-4380510 + CAT--TGTTG-GC----GGTTCCTCCAAGGAA----ACTGGAAAAATGTTTGATCCCATCTGGTA------------------AG-----------------------------ACTTATACAATTTATAGCAAACACGTT-------------------------------------------TTTTTTTTCTAAT--------------------------TGTTTTGGATTTTAGATAAAAGTGCTTCTTTGCCTGCCGACACCAATGAGGAA-----------TC--TTCATTT---------GCTGTTGCGGTA
droAna3 scaffold_12905:479503-479647 + TGG--CGGTC-GT-----------------ACGATG----GCTAGTCCTGTAAAT------AGAAAGCGTAAGTACAT-----------------------------GTTTCTA---------------------------A-------TCTGTTTGAAGGTGATTAATTCAT---GGTTTGTGTTT----------------------------------------------TTCAGGCAAGGCAACTATCACAACAGGCAACGACAATGCGGAA-------------------------------GCAATTGCG-AA
droBip1 scf7180000393693:856-1022 + CGT--TGTAG-GC--GTGGTGCTAC-----AAAATG----GACAAGTTTGTGAAA------AGTAA------------------GTA------------------TTGTTTCAA---------------------------AATTACTCTTTGCATACAAGTGAAAATGTATT-CATGCGT----ATGTATTGGTATGCAAACGCATTGAAAAGGCCGGT---------------------------------A----------------------TTTATGCATATACTCATTGCAT---------GCTGTTTTTATT
droKik1 scf7180000302629:4066-4239 + TTGGTTGTAG-GC--GTGGTGCTAC-----AAAATG----GAGAAATTTGTAAAA-----AAGTAA------------------GTT------------------TTGTTTCTA---------------------------AATGACGCTCTGCATACAAGTGAAAATGTATA-CATGTGT----ATGTATTGGTATGCAGAAGCATTGAAAAGACACCA---------------------------------C----------------------TTTATTCATATATTTGT-A----ATATTTTAGTAACATCAATA
droFic1 scf7180000453175:11561-11698 - CAT--GGATA-AG------TTCC--TAACAAT----TGCGGAAAA---------A------GGTAAGTGCAAGTGTATTTGTAAG-----------------------------TTTTATTTTAAGTATTCAAAACGTGTT-------------------------------------------TTT----------------------------------------------TTCAATTAAAGCAA-AACGAC----------------------GCAGCTCATCTACTCCT-A----G-----CAGCGACGTCGAAG
droEle1 scf7180000491021:2150-2194 + TGA--TTTAA-----------------------------------------------------------------------------------------------------------------------------------AGTTAAGTTTTCCTTA-------TATTCTTATAAAAGT--------------------------------------------------------------------------------------------------------------------------------------TTTTGT
droTak1 scf7180000415823:2222-2386 + CCC--CTTAGGGC----GGTTCCTCGTATCAAAATG----GACAGGTTCCTGCACATAACAAGTAA------------------GTATGAGCGGCAGCAGTAGTT---------ACTTAATTAATGTTTACCCACGGTGCT-------------------------------------------TTT----------------------------------------------TTTAGACAATGCATCTCCTTCGTCTGCTC--------------------CTTC--------ATTTGATGCTTTGTCGCCTACTCCT
droEug1 scf7180000409859:37936-38075 + CAT--GGATA-AG------TTCC--TAACAAT----TGTGGAAAA---------A------GGTAAGTGAAAGTGTATTTGTAAG-----------------------------TTTTATTTTATGTATTCAAAACGTGTT-------------------------------------------TTT--TT------------------------------------------TTCAATTAAAGCAA-AACGAC----------------------GCAGCTCATCTACTCCT-A----G-----CAGCGACGTCGAAG
droYak3 v2_chrX_random_045:6168-6290 + CAA--GGTTG-GGAAATGGAG-AAG-----AGGATG----GATAAACATGTGAAA------AGTAA------------------GTA--------------------------------------------------------------------------------CGTATA-CACGTGT----TTTTATTTATATTTAGTA-------------ACCACTATGTTCTTGATTTCAG-------------------------------------------------------------ACACTTCAACAACTGTGGAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CTT--TGTTG-GC----GGTTCCTC-AAAAAT----TATGGATAAGTTTGTGATTTCATCAAGTAA------------------GT---------------------GTTTCCA---------------------------AGCTAATTTTTTCTTA-------TTTGTTCATAATTGTTTTTGTAT----------------------------------------------TTTAGATAAAAGTGCATCATCAGCTGCCT--------------------CAACATC--TTCA----G-----CTGCCTCATCGATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................AACATC--TTCA----G-----CTGCCTCATCGA..2370.43303000
.....................................................................................................................................................................................................................................................TGCATCATCAGCTGCCT--------------------CAACATC--TT..........................2660.33202000
.........................................................................................................................................................................................................................................................TCATCAGCTGCCT--------------------CAACATC--TTCA----G-----C.............2660.33202000
...........................................................................................................................................................................................................................................................................................AACATC--TTCA----G-----CTGCCTCATCGATA2570.29202000
...........................................AAGTTTGTGATTTCATCAAGTAA------------------GT---------------------GT..................................................................................................................................................................................................................2770.29202000
.................................................................................................................................................................................................................................................................TGCCT--------------------CAACATC--TTCA----G-----CTGCCTC.......2470.29202000
.........................................................................................................................................................................................................................................................TCATCAGCTGCCT--------------------CAACATC--TTCA----G-----..............2560.17101000
.........................................................................................................................................................................................................................................TTTAGATAAAAGTGCATCATCAGC..............................................................2460.17100010
............................................................................................................................................................................................................................................AGATAAAAGTGCATCATCAGC..............................................................2160.17101000
.........................................................................................................................................................................................................................................TTTAGATAAAAGTGCATCATCAGCTG............................................................2660.17101000
.....................................................................................................................................................................................................................................................TGCATCATCAGCTGCCT--------------------CAACATC--TTC.........................2760.17101000
...............................................................................................................................................................................................................................................TAAAAGTGCATCATCAGCTGCCT--------------------CAACA................................2860.17101000
..........................................................................................................................................................................................................................................................................................CAACATC--TTCA----G-----CTGCCTCATCGA..2470.14101000
....................................TATGGATAAGTTTGTGATTTC......................................................................................................................................................................................................................................................................2170.14101000
.............................AAT----TATGGATAAGTTTGTGA..........................................................................................................................................................................................................................................................................2070.14100010
.......................TC-AAAAAT----TATGGATAAGTTTGTGATT........................................................................................................................................................................................................................................................................2770.14100010
.....................................................................................................................................................................................................................................................................T--------------------CAACATC--TTCA----G-----CTGCCTC.......2070.14101000
...............................................................................................................................................................................................................................................................GCTGCCT--------------------CAACATC--TTCA----G-----CTGCC.........2470.14101000
...........................................AAGTTTGTGATTTCATCAAGTAA------------------G..........................................................................................................................................................................................................................................2470.14101000
....................................................................................................................................................................................................................................................................CT--------------------CAACATC--TTCA----G-----CTGCCTC.......2170.14101000
......................................TGGATAAGTTTGTGATTTCATCAA.................................................................................................................................................................................................................................................................2470.14101000
.................................................................................................................................................................................................................................................................TGCCT--------------------CAACATC--TTCA----G-----CTGCCTCA......2570.14101000
..............................AT----TATGGATAAGTTTGTGATTTCA.....................................................................................................................................................................................................................................................................2470.14101000
....................................................................................................................................................................................................................................................................CT--------------------CAACATC--TTCA----G-----CTGCCTCAT.....2370.14101000
...........................................................................................................................................................................................................................................................................................AACATC--TTCA----G-----CTGCCTCATCGAT.2470.14101000
....................................TATGGATAAGTTTGTGATTTCATCAAA................................................................................................................................................................................................................................................................2770.14100010
droMoj3
CAT--TGTTG-GC----GGTTCCTCCAAGGAA----ACTGGAAAAATGTTTGATCCCATCTGGTA------------------AG-----------------------------ACTTATACAATTTATAGCAAACACGTT-------------------------------------------TTTTTTTTCTAAT--------------------------TGTTTTGGATTTTAGATAAAAGTGCTTCTTTGCCTGCCGACACCAATGAGGAA-----------TC--TTCATTT---------GCTGTTGCGGTASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................................................................................................................................................................................................................................................................GGAA-----------TC--TTCATTT---------GCTGTTGCGGT.2421.002200000
..........................................................TCTGGTA------------------AG-----------------------------ACTTATACAATTTATAGCC..........................................................................................................................................................................................2811.001100000
............................................................................................................................................................................................................................................................TTGCCTGCCGACACCAATGAGGAA-----------TC--T...........................2711.001100000
................................................................................................................................................................................................................................................................................GGAA-----------TC--TTCATTT---------GCTGTTGCGG..2321.002200000
................................................................................................................................................................................................................................................................................GGAA-----------TC--TTCATTT---------GCTGTTGCGGTA2521.002200000
.................................................................................................................................................................................................................................................................................GAA-----------TC--TTCATTT---------GCTGTTGCGG..2220.501100000
...................................................................................................................................................................................................................................TTGGATTTTAGATAAAAGTGCTTCT...................................................................25110.364400000
..................................................................................................................................................................................................................................TTTGGATTTTAGATAAAAGTGCTTCTT..................................................................27110.091000010
...................................................................................................................................................................................................................................TTGGATTTTAGATAAAAGTGCTTC....................................................................24110.091100000
...................................................................................................................................................................................................................................TTGGATTTTAGATAAAAGTGC.......................................................................21120.081000010
.............................................................................................................................................................................................TTTCTAAT--------------------------TGTTTTGGATTTTAGA................................................................................24130.081100000
................................................................................................................................................................................................CTAAT--------------------------TGTTTTGGATTTTAGC................................................................................21140.071000010
droAna3
TGG--CGGTC-GT-----------------ACGATG----GCTAGTCCTGTAAAT------AGAAAGCGTAAGTACAT-----------------------------GTTTCTA---------------------------A-------TCTGTTTGAAGGTGATTAATTCAT---GGTTTGTGTTT----------------------------------------------TTCAGGCAAGGCAACTATCACAACAGGCAACGACAATGCGGAA-------------------------------GCAATTGCG-AASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................AGTCCTGTAAAT------AGAAAGCGTAAG......................................................................................................................................................................................................................................................2411.001010000
.................................................GTAAAT------AGAAAGCGTAAGTACAT-----------------------------GT..................................................................................................................................................................................................................2511.001000010
........TC-GT-----------------ACGATG----GCTAGTCCTGTAAAT------AGA...............................................................................................................................................................................................................................................................2831.003300000
.............................................................................................................................................................AAGGTGATTAATTCAT---GGTTTGTGT......................................................................................................................................2521.002020000
...........................................AGTCCTGTAAAT------AGAAAGCGTAAGT.....................................................................................................................................................................................................................................................2511.001010000
...................................................................................................................................................................................................................................................GCAACTATCACAACAGGCAACGA.....................................................2331.003030000
..............................................CCTGTAAAT------AGAAAGCGTAAGTA....................................................................................................................................................................................................................................................2311.001010000
.........................................................................................................................................................................................TT----------------------------------------------TTCAGGCAAGGCAACTATCACAACA.............................................................2730.672110000
........................................................................................................................................................................................................................................................TATCACAACAGGCAACGACAATGCGG.............................................2630.672010100
..........................................................................................................................................................................................T----------------------------------------------TTCAGGCAAGGCAACTATCACAACAGG...........................................................2830.672110000
........................................................................................................................................................................................................................................................TATCACAACAGGCAACGACAATGC...............................................2430.672200000
TGG--CGGTC-GT-----------------ACGATG----GCTAGTC................................................................................................................................................................................................................................................................................2330.672020000
.....................................................................TAAGTACAT-----------------------------GTTTCTA---------------------------A-------TCTGTTT...................................................................................................................................................................2420.501010000
.....................................................................................................................................................................................GTGTTT----------------------------------------------TTCAGGCAAGGCAACTA.....................................................................2320.501100000
.............................................................................................................................................................AAGGTGATTAATTCAT---GGTTT..........................................................................................................................................2120.501010000
............................................................................................................................................................................T---GGTTTGTGTTT----------------------------------------------TTCAGGCAAGGCA.........................................................................2520.501010000
........................................................................................................................................................................................................................................................TATCACAACAGGCAACGACAATGCG..............................................2530.331100000
.........................................................................................................................................................................................................................................TTCAGGCAAGGCAACTATCACAACAG............................................................2630.331010000
...................................................................................................................................................................................................................................................GCAACTATCACAACAGGCAACGAC....................................................2430.331100000
..................................................................................................................................................................................................................................................GGCAACTATCACAACAGGCAACGA.....................................................2430.331010000
................................................................................................................................................................................................................................................AAGGCAACTATCACAACAGGCAACGACA...................................................2830.331100000
................................................................................................................................................................................................................................................AAGGCAACTATCACAACAGGCAA........................................................2330.331100000
............................................................................................................................................................................................................................................................ACAACAGGCAACGACAATGCGG.............................................2230.331100000
.........................................................................................................................................................................................................................................TTCAGGCAAGGCAACTATCACAACAGG...........................................................2730.331010000
.........................................................................................................................................................................................................................................TTCAGGCAAGGCAACTATCACAACAGGC..........................................................2830.331010000
........................................................................................................................................................................................................................................................TATCACAACAGGCAACGACAATG................................................2330.331100000
.........................................................................TACAT-----------------------------GTTTCTA---------------------------A-------TCTGTTTGAAGGTGA...........................................................................................................................................................2830.331100000
.........................................................................................................................................................................................TT----------------------------------------------TTCAGGCAAGGCAACTATCACAACAGG...........................................................2930.331100000
....................................................................................................................................................................................................................................................CAACTATCACAACAGGCAACGACT...................................................2430.331010000
.............................................................................................................................................................................................................................................GGCAAGGCAACTATCACAACAGG...........................................................2330.331010000
................................................................................................................................................................................................................................................AAGGCAACTATCACAACAGGCAACGA.....................................................2630.331100000
...................................................................................................................................................................................................................................................GCAACTATCACAACAGGCAAC.......................................................2130.331010000
TGG--CGGTC-GT-----------------ACGATG----GCTAGTCC...............................................................................................................................................................................................................................................................................2430.331100000
.........................................................................................................................................................................................................................................TTCAGGCAAGGCAACTATCACAACA.............................................................2530.331100000
.............................................................................................................................................................................................................................................GGCAAGGCAACTATCACAACAGGCAAC.......................................................2730.331010000
droBip1
CGT--TGTAG-GC--GTGGTGCTAC-----AAAATG----GACAAGTTTGTGAAA------AGTAA------------------GTA------------------TTGTTTCAA---------------------------AATTACTCTTTGCATACAAGTGAAAATGTATT-CATGCGT----ATGTATTGGTATGCAAACGCATTGAAAAGGCCGGT---------------------------------A----------------------TTTATGCATATACTCATTGCAT---------GCTGTTTTTATTSizeHit CountTotal NormTotal
No Reads
droKik1
TTGGTTGTAG-GC--GTGGTGCTAC-----AAAATG----GAGAAATTTGTAAAA-----AAGTAA------------------GTT------------------TTGTTTCTA---------------------------AATGACGCTCTGCATACAAGTGAAAATGTATA-CATGTGT----ATGTATTGGTATGCAGAAGCATTGAAAAGACACCA---------------------------------C----------------------TTTATTCATATATTTGT-A----ATATTTTAGTAACATCAATASizeHit CountTotal NormTotal
No Reads
droFic1
CAT--GGATA-AG------TTCC--TAACAAT----TGCGGAAAA---------A------GGTAAGTGCAAGTGTATTTGTAAG-----------------------------TTTTATTTTAAGTATTCAAAACGTGTT-------------------------------------------TTT----------------------------------------------TTCAATTAAAGCAA-AACGAC----------------------GCAGCTCATCTACTCCT-A----G-----CAGCGACGTCGAAGSizeHit CountTotal NormTotal
No Reads
droEle1
TGA--TTTAA-----------------------------------------------------------------------------------------------------------------------------------AGTTAAGTTTTCCTTA-------TATTCTTATAAAAGT--------------------------------------------------------------------------------------------------------------------------------------TTTTGTSizeHit CountTotal NormTotal
No Reads
droTak1
CCC--CTTAGGGC----GGTTCCTCGTATCAAAATG----GACAGGTTCCTGCACATAACAAGTAA------------------GTATGAGCGGCAGCAGTAGTT---------ACTTAATTAATGTTTACCCACGGTGCT-------------------------------------------TTT----------------------------------------------TTTAGACAATGCATCTCCTTCGTCTGCTC--------------------CTTC--------ATTTGATGCTTTGTCGCCTACTCCTSizeHit CountTotal NormTotal
No Reads
droEug1
CAT--GGATA-AG------TTCC--TAACAAT----TGTGGAAAA---------A------GGTAAGTGAAAGTGTATTTGTAAG-----------------------------TTTTATTTTATGTATTCAAAACGTGTT-------------------------------------------TTT--TT------------------------------------------TTCAATTAAAGCAA-AACGAC----------------------GCAGCTCATCTACTCCT-A----G-----CAGCGACGTCGAAGSizeHit CountTotal NormTotal
No Reads
droYak3
CAA--GGTTG-GGAAATGGAG-AAG-----AGGATG----GATAAACATGTGAAA------AGTAA------------------GTA--------------------------------------------------------------------------------CGTATA-CACGTGT----TTTTATTTATATTTAGTA-------------ACCACTATGTTCTTGATTTCAG-------------------------------------------------------------ACACTTCAACAACTGTGGATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................CTTGATTTCAG-------------------------------------------------------------ACACTTCAACAACTG.....2613.00303000000000
.....................................................................................................................................................................................................................................TGATTTCAG-------------------------------------------------------------ACACTTCAACAACTGTGGA.2812.00201100000000
...................................................................................................................................................................................................................................CTTGATTTCAG-------------------------------------------------------------ACACTTCAACAAC.......2411.00101000000000
.....................................................................................................................................................................................................................................TGATTTCAG-------------------------------------------------------------ACACTTCAACAACT......2311.00101000000000
...........................................AAACATGTGAAA------AGTAA------------------GTA--------------------------------------------------------------------------------CG......................................................................................................................................................2211.00101000000000
.....................................................................................................................................................................................................TTAGTA-------------ACCACTATGTTCTTGATTTCA..................................................................................2730.33101000000000

Generated: 05/17/2015 at 10:15 PM