dwi_2428

CDS [Dwil\GK11491-cds]; CDS [Dwil\GK11491-cds]; exon [dwil_GLEANR_11697:2]; exon [dwil_GLEANR_11697:3]; intron [Dwil\GK11491-in]

##################################################------------------------------------------------------------------################################################## GGATTTTGTTGGGCAAACCCCTGTACATTAAGTTCCAGCGTCGTAATAAGGTGAGTTAACTAACTAACTAACTGATTAACAGAATTTTCGAGTTACTTATAATATGTAATCCTTAGCCTGTACAACCATCAGTGGAAATTGATGAGGTCATAGAGAAAATTGAGGT ************************************************((((((.((((..........(((.....)))........))))))))))................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V117 male body	V118 embryo	M045 female body	M020 head
................................................................................................................................TCAGTGGAAATTGATGAGGTC.................	21	0	1	2.00	2	1	1	0	0
...................................................................................................................................GTGGAAATTGATGAGGTCATAGAGA..........	25	0	1	2.00	2	2	0	0	0
............................................................................................................................................GATGAGGTCATAGAGAAAAT......	20	0	1	2.00	2	2	0	0	0
........................................................................................................................................AATTGATGAGGTCATAGAGA..........	20	0	1	2.00	2	2	0	0	0
...................................................................................................................................GTGGAAATTGATGAGGTCATAGAG...........	24	0	1	2.00	2	2	0	0	0
........................ACATTAAGTTCCAGCGTCGTA.........................................................................................................................	21	0	1	2.00	2	1	1	0	0
...................................................................................................................................GTGGAAATTGATGAGGTC.................	18	0	1	2.00	2	2	0	0	0
..........................ATTAAGTTCCAGCGTCGTAATA......................................................................................................................	22	0	1	2.00	2	0	0	0	2
..........................................................................................................................................TTGATGAGGTCATAGAGAAA........	20	0	1	1.00	1	0	1	0	0
......................................................................................................................................GAAATTGATGAGGTCATAGAGAAAATT.....	27	0	1	1.00	1	1	0	0	0
...................................................................................................................................GTGGAAATTGATGAGGTCAT...............	20	0	1	1.00	1	1	0	0	0
..................................................................................................................................AGTGGAAATTGATGAGGTC.................	19	0	1	1.00	1	1	0	0	0
.......................TACATTAAGTTCCAGCGTCGTAAT.......................................................................................................................	24	0	1	1.00	1	1	0	0	0
.........................CATTAAGTTCCAGCGTCGTA.........................................................................................................................	20	0	1	1.00	1	0	0	1	0
..........................................................................................................................................TTGATGAGGTCATAGAGAAAATT.....	23	0	1	1.00	1	1	0	0	0
........................................................................................................................................AATTGATGAGGTCATAGAGAAAA.......	23	0	1	1.00	1	0	1	0	0
........................................................................................................................................AATTGATGAGGTCATAGAGAA.........	21	0	1	1.00	1	0	1	0	0
.....................................................................................................................CTGTACAACCATCAGTGGAAATTG.........................	24	0	1	1.00	1	1	0	0	0
............................................................................................................................................GATGAGGTCATAGAGAAAATTGA...	23	0	1	1.00	1	1	0	0	0
...............................................................................................................................ATCAGTGGAAATTGATGAGGTC.................	22	0	1	1.00	1	0	1	0	0
..................................................................................................................AGCCTGTACAACCATCAGT.................................	19	0	1	1.00	1	0	0	1	0
...............................................................................................................................ATCAGTGGAAATTGATGAGGTCATAGA............	27	0	1	1.00	1	0	0	1	0
......................................................................................................................................GAAATTGATGAGGTCATAG.............	19	0	1	1.00	1	1	0	0	0
......................................................................................................................................GAAATTGATGAGGTCATAGAGAAA........	24	0	1	1.00	1	0	1	0	0
.................................................................................................................................CAGTGGAAATTGATGAGGTCATA..............	23	0	1	1.00	1	1	0	0	0
.........................CATTAAGTTCCAGCGTCGTAATA......................................................................................................................	23	0	1	1.00	1	1	0	0	0
......TGTTGGGCAAACCCCTGTACATT.........................................................................................................................................	23	0	1	1.00	1	0	0	1	0
...............................................................................................................ATAAGCCTGTACAACCATCAGTGGA..............................	25	2	1	1.00	1	0	0	1	0
.........................................................................................................................................ATTGATGAGGTCATAGAGAAAATT.....	24	0	1	1.00	1	1	0	0	0
.......................................................................................................................GTACAACCATCAGTGGAAA............................	19	0	1	1.00	1	0	1	0	0
..............................................................................................................AATAAGCCTGTACAACCATCAGTGGA..............................	26	3	1	1.00	1	0	1	0	0
............................................................................................................................................GATGAGGTCATAGAGAAAATTGAGGT	26	0	1	1.00	1	1	0	0	0
...........................................................................................................................................TGATGAGGTCATAGAGAAAAT......	21	0	1	1.00	1	1	0	0	0
........................ACATTAAGTTCCAGCGTCGTAATAAGCCT.................................................................................................................	29	3	1	1.00	1	1	0	0	0
.........................................................................................................................................ATTGATGAGGTCATAGAGAAA........	21	0	1	1.00	1	1	0	0	0
........................................................................................................................................AATTGATGAGGTCATAGAGAAA........	22	0	1	1.00	1	1	0	0	0
...........................TTAAGTTCCAGCGTCGTAATAAGCCT.................................................................................................................	26	3	1	1.00	1	0	0	1	0
..........................ATTAAGTTCCAGCGTCGTA.........................................................................................................................	19	0	1	1.00	1	0	0	1	0
........................................................................................................................................AATTGATGAGGTCATAGAGAAAATT.....	25	0	1	1.00	1	1	0	0	0
................................TTCCAGCGTCGTAATAAG....................................................................................................................	18	0	1	1.00	1	0	0	0	1
........................................................................................................................................AATTGATGAGGTCATAGAG...........	19	0	1	1.00	1	1	0	0	0
.................................TCCAGCGTCGTAATAAGCCT.................................................................................................................	20	3	6	0.17	1	1	0	0	0
..........................................................................................................................................AAGATGAGATCATAGAGAAAAT......	22	3	8	0.13	1	1	0	0	0
....................................................................................................................................TGGAAGTTGATGAGGACA................	18	2	9	0.11	1	0	0	1	0

CCTAAAACAACCCGTTTGGGGACATGTAATTCAAGGTCGCAGCATTATTCCACTCAATTGATTGATTGATTGACTAATTGTCTTAAAAGCTCAATGAATATTATACATTAGGAATCGGACATGTTGGTAGTCACCTTTAACTACTCCAGTATCTCTTTTAACTCCA ************************************************((((((.((((..........(((.....)))........))))))))))................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V117 male body
..................................................................................................................TCGGACAGGTTGGTCGTAA.................................	19	3	20	0.10	2	1	1
.................................................................................................................ATCGGGCATGTTGGGAAT...................................	18	3	20	0.10	2	2	0
................................................................................................................................AGGCACCTTTGTCTACTCC...................	19	3	20	0.05	1	1	0

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004902:1056091-1056256 -	dwi_2428	GGATTTTGTTGGGCAAACCCCTGTACATTAAGTTCCAGCGTCGTAATAAGGTGAGTTAACTAAC--TAAC---TAACTGATTAACAGAATT-----------------TTCG-------------AG--T-T-----------ACTTA----------TA---------ATATG----T-----AATCCTTAGCCTGTACAACCATCAGTG---GAAATTGATGAGGTC---ATAGAG-------AAAATTGAGGT---
droVir3	scaffold_12855:4676245-4676403 +	dvi_3904	GGATGCTGCTGGGCAAGCCGCTGTACATCAAATTCACCCGTCGCAACACCGTTGCACATGTAAG--TAGAGCGTCT--------------TC-AGGTTGAGGGAAGCG------------------------------------CTA-----------TTG--------TTG----ATT-----TTTTTTTTATTTTCTGGACAGGTCAAG---CACAATGGCGAGCTG---ACAGGC-------AACATGGA------
droMoj3	scaffold_6540:9043177-9043331 +	dmo_1874	GGCTCCTGCTGGGCGTGCCCATTTGGACGATCATCAAGCGCAAGTATATGGTAAGTCATG--CT--AAA------T--------------TTGGGT--------TTCG------------------------------------ATTTGGATCTTTAG-----------AATTT----T-----GTTTGAAAGAGCGACAAGT---TTGAATATACGGGCGATACCATC---ATGGAG-------ACCATTGAGAT---
droGri2	scaffold_14906:7193017-7193187 +		GGATGCTGCTGGGCAAGCCGCTGTATATTTTAGCCACTCGTCGCAAGACTGTCGCACAT-------------------------------GT-AAGTCGTCGT-CATATGTTC-------------TTT-GCTTAAAGTAGATTTTT---------AT---T-------ATTTT-TTAT-----TGATGTTCAATTCTTGGGCAGGTCAAG---CACAATGGCGAGTTG---ACAGGC-------AACATGGAACT---
dp5	2:11955524-11955690 -		GGATTCTTGTCGGCAAGCCCCTCTGGATCAAGTACCAGCGCCGAAACAGGGTGAGTTATTCGAT--TAGC---TCCTTACAGAAGAAAGTT-------ATAGG----------------------AA--G-G-----------GTCCA----------TC---------AACTC----T-----ATTCCTTAGCCCGCTGAGCTCGTGATA---CAGGTCGATGAAATC---GTGGAG-------AAGATCGAGGT---
droPer2	scaffold_0:8550314-8550480 +		GGATTCTTGTCGGCAAGCCCCTTTGGATCAAGTACCAGCGCCGAAACAGGGTGAGTTATTCGAT--TAGC---TCCTTACAAAAGAAAGTT-------ATAGG----------------------AA--G-G-----------GTCCA----------TC---------AACTC----T-----ATTCCTTAGCCGGCTGAGCCCGTGGTA---CAGGTAGATGAAATC---GTGGAG-------AAGATCGAGGT---
droAna3	scaffold_13340:9891895-9892047 +		GGATTCTGCTAGGAAAGCCCCTGTACATCAAGTTCCAGCGCCGTGGAAGGGTGAGTTTT-------------------------------TA-ATCCACTA-------------------------------------------------------AAA-ACAAAACTAACATATGTAA-----TCTTTTCAGCCCGCTGGTCCAGTTGTA---GAGGTTGACGAAGTA---GTTGAA-------AAAATTGAGATCGC
droBip1	scf7180000396691:2591431-2591583 +		GGATTCTGCTGGGAAAGCCCCTGTACATCAAGTTCCAGCGCCGTGGACGGGTAAGTTCT-------------------------------TA-ACCCACTT-------------------------------------------------------AAA-ACTAAACTAACTTTCGCAA-----TCTTCCCAGCCCGCTGGTCCAGTCGTC---GAGGTGGACGAAGTA---GTTGAA-------AAAATTGAGATCAC
droKik1	scf7180000302639:2531905-2532066 -		GGATCCTGCTCGGCAAGCCGCTATATATTAAGTTCAAGCGCCGCAACAGGGTGAGTCT--GAGC--TAGC-----T--------------TG-GGGCTGTAAG-ACGTGACCT-------------AAT-CCTT----------------------CTTACG-------ACTTC----------CTGCTGCAGCCCGTTGGACCCGTGGA---------GGATAATATC---GTGGAG-------AAAATTGAGATAAC
droFic1	scf7180000453800:688913-689065 -		GGATCCTGCTGGGCAAGCCTTTGTACATTAAATTCCAGAGACGCAACAGGGTAAGAGGT-------------------------------TG-TGATTGGAAT-CGTAGAC-------------------GGTT----------------------TTTAAA-------ATATT----T-----ATCTCTTAGCCCGCTGGCCCAGTGGTT---GAACCAGACGAGATT---GTAGAG-------AAGATCGAGGT---
droEle1	scf7180000491008:2036845-2037006 +		GGATCCTGCTCGGAAAGCCCTTGTATATTAAATTCCAACGCCGCAACAGGGTGAGATT--AGAT--AAGA---TA----------AAAGTTG-GG-CTGT---------------------TTCGTA--T-A-----------AATTT---------------------AAAACTGT-T-----ACCTTTTAGCCTGCTGGCCCATTGGTG---GAGGTAGATGAGATC---GTGGAG-------AAGATAGAGGT---
droRho1	scf7180000780017:12198-12366 -		GGATCCTCCTTGGAAAGCCACTTTATATTAAATACCAACGCCGCAACAGGGTGAGATT--TGAT--TAGC-----------------------------------------CAAGAATTGTTT---CTT-ACTTAATTTATTTGTTTT----------TA---------ATATC----T-----TACTTTTAGCCCGCTGGTCCATTGGTG---GAGGTAGACGAGATC---GTGGAG-------AAGATAGAGGTTAC
droBia1	scf7180000299102:1745797-1745959 +		GGATCCTGCTCGGAAAGCCTTTGTACATTAAATTCAAGCGCCGAAACAGGGTAATGCATG--ATTATGTGCATTTC--------------TT-AGATTGTAA------------------------AAT-ACTT----------------------AATAAA-------ATG----CAT-----CTGTTTCAGCCCGTTGGCCCAGTAGTA---GAGGTAGACGAGATC---GTGGAG-------AAGATCGAGGT---
droTak1	scf7180000415991:249025-249150 -		TGT---TGGCCGGCAAGCCGCTGTATTTGCTAAGAACGCGCAGGAAAA-------ACAA-------------------------------AG-GGCCAGGGA-------------------------------------------------------------------------------------TCTTAAGCCGCTGCGCCGGCAGAC---AATCCGGGAGATGCGATCCACGATGTGGTACTCCACGGACGA---
droEug1	scf7180000409802:1832019-1832178 +		GGATCCTGCTCGGAAAGCCTCTGTACATTAAATACCATCGCCGCAACAAGGTAAGATTT-------------------------------TG-GGA--------AACATCTTT-------------ATT-TTTT----------------------AATGAC-------ATATATGTGTTATCGACCCATTAGCCAGCTGGTCCAGTGGTG---GAGGTCGATGAGATC---GTGGAG-------AAGATTGAGGT---
dm3	chr3R:14213185-14213346 -		GGATTCTGCTTGGAAAACCTCTATACATTAAATACCAACGCCGAAACAGGGTAAATTAT-------------------------------TG-GGACTGTCAT-AATTGCCCA-------------ATT-ACCT----------------------AATAAT-------ATATCTATAT-----ACCTTCTAGCCTGCTGGACCAGTGGAG---GAAGTGGACGAGATC---GTAGAG-------AAGATAGAGGT---
droSim2	3r:7063580-7063744 +	dsi_14355	GGATTCTGCTTGGAAAACCTCTATACATTAAATACCAACGCCGCAACAGGGTAAGTTAT-------------------------------TG-GGACTGTGAT-AATTACCCA-------------ATT-ACTT----------------------TGTAAT-------ATATCTGTAT-----ACCTTCTAGCCTGCTGGACCAGTGGTG---GAAGTGGACGAGATC---GTAGAG-------AAGATAGAGGTGAC
droSec2	scaffold_5:5681856-5682020 +		GGATTCTGCTTGGAAAACCTCTATACATTAAATACCAACGCCGCAACAGGGTAAGTTAT-------------------------------TG-GGACTGTGAT-AATTACCCA-------------ATT-ACCT----------------------CGTAAT-------ATATCTATAT-----ACCTTCTAGCCTGCTGGACCAGTGGTG---GAAGTGGACGAGATC---GTAGAG-------AAGATAGAGGTGAC
droYak3	3R:2832485-2832645 -		GGATTCTGCTTGGAAAACCTCTATACATTAAATACCAACGCCGCAACAGGGTAAATTAT-------------------------------TG-GGACTGGAAT-AATTAGCCA-------------ATT-GCCT----------------------AATAAT-------AAATC----C-----ACCTTCCAGCCTGCTGGACCAGTGGTG---GAGGTGGACGAGATC---GTAGAG-------AAGATTGAGGTGAC
droEre2	scaffold_4770:7424592-7424751 +		GGATTCTGCTTGGAAAACCTCTGTACATTAAATACCAACGCCGCAACAGGGTAAGTTAT-------------------------------TG-GGACTGGAAT-AATGATCCA-------------ATT-GCCT----------------------AATAAT-------ATATC----------CACCTTTAGCCTGCTGGACCAGTGGTG---GAGGTGGACGAGATC---GTAGAG-------AAGATAGAGGTGAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

GGATTTTGTTGGGCAAACCCCTGTACATTAAGTTCCAGCGTCGTAATAAGGTGAGTTAACTAAC--TAAC---TAACTGATTAACAGAATT-----------------TTCG-------------AG--T-T-----------ACTTA----------TA---------ATATG----T-----AATCCTTAGCCTGTACAACCATCAGTG---GAAATTGATGAGGTC---ATAGAG-------AAAATTGAGGT---	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................................................................................TCAGTG---GAAATTGATGAGGTC---...........................	21	1	2.00	2	0	0	1	1	0
................................................................................................................................................................................................................GTG---GAAATTGATGAGGTC---ATAGAG-------A.............	25	1	2.00	2	0	0	2	0	0
............................................................................................................................................................................................................................GATGAGGTC---ATAGAG-------AAAAT.........	20	1	2.00	2	0	0	2	0	0
........................................................................................................................................................................................................................AATTGATGAGGTC---ATAGAG-------A.............	20	1	2.00	2	0	0	2	0	0
................................................................................................................................................................................................................GTG---GAAATTGATGAGGTC---ATAGAG-------..............	24	1	2.00	2	0	0	2	0	0
........................ACATTAAGTTCCAGCGTCGTA......................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	1	0
................................................................................................................................................................................................................GTG---GAAATTGATGAGGTC---...........................	18	1	2.00	2	0	0	2	0	0
..........................ATTAAGTTCCAGCGTCGTAATA...................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0
..........................................................................................................................................................................................................................TTGATGAGGTC---ATAGAG-------AAA...........	20	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................GAAATTGATGAGGTC---ATAGAG-------AAAATT........	27	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................GTG---GAAATTGATGAGGTC---AT.........................	20	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................AGTG---GAAATTGATGAGGTC---...........................	19	1	1.00	1	0	0	1	0	0
.......................TACATTAAGTTCCAGCGTCGTAAT....................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.........................CATTAAGTTCCAGCGTCGTA......................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................TTGATGAGGTC---ATAGAG-------AAAATT........	23	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................AATTGATGAGGTC---ATAGAG-------AAAA..........	23	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................................................................AATTGATGAGGTC---ATAGAG-------AA............	21	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................CTGTACAACCATCAGTG---GAAATTG......................................	24	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................GATGAGGTC---ATAGAG-------AAAATTGA......	23	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................ATCAGTG---GAAATTGATGAGGTC---...........................	22	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................AGCCTGTACAACCATCAGT.................................................	19	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................ATCAGTG---GAAATTGATGAGGTC---ATAGA......................	27	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................................GAAATTGATGAGGTC---ATAG.......................	19	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................................................................GAAATTGATGAGGTC---ATAGAG-------AAA...........	24	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................CAGTG---GAAATTGATGAGGTC---ATA........................	23	1	1.00	1	0	0	1	0	0
.........................CATTAAGTTCCAGCGTCGTAATA...................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
......TGTTGGGCAAACCCCTGTACATT......................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................ATTGATGAGGTC---ATAGAG-------AAAATT........	24	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................GTACAACCATCAGTG---GAAA.........................................	19	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................GATGAGGTC---ATAGAG-------AAAATTGAGGT---	26	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................................................................................TGATGAGGTC---ATAGAG-------AAAAT.........	21	1	1.00	1	0	0	1	0	0
........................ACATTAAGTTCCAGCGTCGTAATAAGCCT..............................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................ATTGATGAGGTC---ATAGAG-------AAA...........	21	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................AATTGATGAGGTC---ATAGAG-------AAA...........	22	1	1.00	1	0	0	1	0	0
...........................TTAAGTTCCAGCGTCGTAATAAGCCT..............................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
..........................ATTAAGTTCCAGCGTCGTA......................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................AATTGATGAGGTC---ATAGAG-------AAAATT........	25	1	1.00	1	0	0	1	0	0
................................TTCCAGCGTCGTAATAAG.................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
........................................................................................................................................................................................................................AATTGATGAGGTC---ATAGAG-------..............	19	1	1.00	1	0	0	1	0	0
.................................TCCAGCGTCGTAATAAGCCT..............................................................................................................................................................................................................	20	6	0.17	1	0	0	1	0	0

droVir3

GGATGCTGCTGGGCAAGCCGCTGTACATCAAATTCACCCGTCGCAACACCGTTGCACATGTAAG--TAGAGCGTCT--------------TC-AGGTTGAGGGAAGCG------------------------------------CTA-----------TTG--------TTG----ATT-----TTTTTTTTATTTTCTGGACAGGTCAAG---CACAATGGCGAGCTG---ACAGGC-------AACATGGA------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......TGCTGGGCAAGCCGCTGTACATCAAAT..................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TGCTGGGCAAGCCGCTGTACATCAA....................................................................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................ATCAAATTCACCCGTCGCAACACC.................................................................................................................................................................................................................	24	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CAAATTCACCCGTCGCAACACCGTT..............................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CACCCGTCGCAACACCGTT..............................................................................................................................................................................................................	19	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................ATTCACCCGTCGCAACACCGTTG.............................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................CAAG---CACAATGGCGAGCTG---ACAGGC-------AA............	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................GCTGTACATCAAATTCACCC............................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................G---CACAATGGCGAGCTG---ACA........................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............GCAAGCCGCTGTACATCAAATTCACCCGT..........................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................ATTCACCCGTCGCAACACCGTT..............................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................ACAATGGCGAGCTG---ACAGGC-------AACA..........	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................CAAG---CACAATGGCGAGCTG---ACAGGC-------A.............	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TGCTGCTGGGCAAGCCGCTGTACATCA.....................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................CACCCGTCGCAACACCGTTGCACATG.......................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................ACATCAAATTCACCCGTCGC.......................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................GTCAAG---CACAATGGCGAGCTG---A..........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TGCTGGGCAAGCCGCTGTACAT.......................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................ATCAAATTCACCCGTCGCAACACCGT...............................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................CAATGGCGAGCTG---ACAGGC-------..............	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GGCGAGCTG---ACAGGC-------AACATGGA------	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................CAAG---CACAATGGCGAGCTG---ACAGGC-------AAC...........	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
GGATGCTGCTGGGCAAGCC................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CTGCTGGGCAAGCCGCTGTAC.........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................GTCAAG---CACAATGGCGAGCT...............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AATTCACCCGTCGCAACACCG................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............AAGCCGCTGTACATCAAATTCACC.............................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............AGCCGCTGTACATCAAATTCACCC............................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TACATCAAATTCACCCGTCGCAACACCGT...............................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................ATCAAATTCACCCGTCGCAAC....................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................ATCAAATTCACCCGTCGCAACACCGTT..............................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..................CGCTGTACATCAAATTCACCC............................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................GCCGCTGTACATCAAATTCACCCGT..........................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GATGCTGCTGGGCAAGCCG...............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................AAATTCACCCGTCGCAACACCGT...............................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CAAATTCACCCGTCGCAACACC.................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................ATTCACCCGTCGCAACAC..................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................G---CACAATGGCGAGCTG---ACAGGC-------..............	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................CGTCGCAACACCGTTGCACATGT......................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............AGCCGCTGTACATCAAATTCACCCGTC.........................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CAAATTCACCCGTCGCAACACCG................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................CCGTCGCAACACCGTTGCACA.........................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................GTAAG--TAGAGCGTCT--------------TC-AG....................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GGCTCCTGCTGGGCGTGCCCATTTGGACGATCATCAAGCGCAAGTATATGGTAAGTCATG--CT--AAA------T--------------TTGGGT--------TTCG------------------------------------ATTTGGATCTTTAG-----------AATTT----T-----GTTTGAAAGAGCGACAAGT---TTGAATATACGGGCGATACCATC---ATGGAG-------ACCATTGAGAT---	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................................................................................................................................ATACGGGCGATACCATC---AT.........................	19	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................ATACGGGCGATACCATC---ATGGAG-------..............	23	1	1.00	1	0	0	0	1	0	0
....................................................................................................................................................................................................................ATACGGGCGATACCATC---ATGGA......................	22	1	1.00	1	0	0	0	1	0	0
....................................................................................................................................................................................................GACAAGT---TTGAATATACGGGC.......................................	21	1	1.00	1	0	0	0	0	1	0

droGri2

GGATGCTGCTGGGCAAGCCGCTGTATATTTTAGCCACTCGTCGCAAGACTGTCGCACAT-------------------------------GT-AAGTCGTCGT-CATATGTTC-------------TTT-GCTTAAAGTAGATTTTT---------AT---T-------ATTTT-TTAT-----TGATGTTCAATTCTTGGGCAGGTCAAG---CACAATGGCGAGTTG---ACAGGC-------AACATGGAACT---	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...TGCTGCTGGGCAAGCCGCTG............................................................................................................................................................................................................................................	20	1	1.00	1	1	0

dp5

GGATTCTTGTCGGCAAGCCCCTCTGGATCAAGTACCAGCGCCGAAACAGGGTGAGTTATTCGAT--TAGC---TCCTTACAGAAGAAAGTT-------ATAGG----------------------AA--G-G-----------GTCCA----------TC---------AACTC----T-----ATTCCTTAGCCCGCTGAGCTCGTGATA---CAGGTCGATGAAATC---GTGGAG-------AAGATCGAGGT---	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................................................................................................................................................................................................................AATC---GTGGAG-------AAGATCGA......	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............AGCCCCTCTGGATCAAGTACC...............................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................GTGATA---CAGGTCGATGAAATC---...........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................GTACCAGCGCCGAAACAGGCC...............................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GATA---CAGGTCGATGAAATC---GT.........................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................GTCGATGAAATC---GTGGAG-------AA............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GCTGAGCTCGTGATA---CAGGTC.......................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...TTCTTGTCGGCAAGCCCCTCTGGATCA.....................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
GGATTCTTGTCGGCAAGCC................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GATGAAATC---GTGGAG-------AAGATCGAG.....	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................GCCCGCTGAGCTCGTGATA---CAGGTC.......................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GGATTCTTGTCGGCAAGCCCCTTTGGATCAAGTACCAGCGCCGAAACAGGGTGAGTTATTCGAT--TAGC---TCCTTACAAAAGAAAGTT-------ATAGG----------------------AA--G-G-----------GTCCA----------TC---------AACTC----T-----ATTCCTTAGCCGGCTGAGCCCGTGGTA---CAGGTAGATGAAATC---GTGGAG-------AAGATCGAGGT---	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................................................................................................................................................................................................GTGGTA---CAGGTAGATGAAATC---GTGGA......................	26	1	2.00	2	2	0	0	0	0	0
.....CTTGTCGGCAAGCCCCTTTGGATC......................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
..ATTCTTGTCGGCAAGCCCCTTTGG.........................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.GATTCTTGTCGGCAAGCCCCTTTGGAT.......................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................CAGGTAGATGAAATC---GTGGAG-------A.............	22	1	1.00	1	0	1	0	0	0	0
GGATTCTTGTCGGCAAGCC................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................................................A---CAGGTAGATGAAATC---GTGGAG-------AAG...........	25	1	1.00	1	0	0	0	0	0	1
..............AAGCCCCTTTGGATCAAGT..................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................GGCTGAGCCCGTGGTA---CAGGTA.......................................	22	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................GAAATC---GTGGAG-------AAGATC........	18	1	1.00	1	0	1	0	0	0	0

droAna3

GGATTCTGCTAGGAAAGCCCCTGTACATCAAGTTCCAGCGCCGTGGAAGGGTGAGTTTT-------------------------------TA-ATCCACTA-------------------------------------------------------AAA-ACAAAACTAACATATGTAA-----TCTTTTCAGCCCGCTGGTCCAGTTGTA---GAGGTTGACGAAGTA---GTTGAA-------AAAATTGAGATCGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................................................................GTA---GAGGTTGACGAAGTA---GTTGA......................	23	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................................CCGCTGGTCCAGTTGTA---GAG..........................................	20	1	1.00	1	0	0	1	0	0	0
..........................ATCAAGTTCCAGCGCCGTGGAA...................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
......................................................................................................................................................................................................TGGTCCAGTTGTA---GAGGTTGACGAA.................................	25	1	1.00	1	0	0	0	0	1	0
.GATTCTGCTAGGAAAGCCCCT.............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
..........................ATCAAGTTCCAGCGCCGTG......................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.....CTGCTAGGAAAGCCCCTGTAC.........................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0

droBip1

GGATTCTGCTGGGAAAGCCCCTGTACATCAAGTTCCAGCGCCGTGGACGGGTAAGTTCT-------------------------------TA-ACCCACTT-------------------------------------------------------AAA-ACTAAACTAACTTTCGCAA-----TCTTCCCAGCCCGCTGGTCCAGTCGTC---GAGGTGGACGAAGTA---GTTGAA-------AAAATTGAGATCAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGATCCTGCTCGGCAAGCCGCTATATATTAAGTTCAAGCGCCGCAACAGGGTGAGTCT--GAGC--TAGC-----T--------------TG-GGGCTGTAAG-ACGTGACCT-------------AAT-CCTT----------------------CTTACG-------ACTTC----------CTGCTGCAGCCCGTTGGACCCGTGGA---------GGATAATATC---GTGGAG-------AAAATTGAGATAAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGATCCTGCTGGGCAAGCCTTTGTACATTAAATTCCAGAGACGCAACAGGGTAAGAGGT-------------------------------TG-TGATTGGAAT-CGTAGAC-------------------GGTT----------------------TTTAAA-------ATATT----T-----ATCTCTTAGCCCGCTGGCCCAGTGGTT---GAACCAGACGAGATT---GTAGAG-------AAGATCGAGGT---	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGATCCTGCTCGGAAAGCCCTTGTATATTAAATTCCAACGCCGCAACAGGGTGAGATT--AGAT--AAGA---TA----------AAAGTTG-GG-CTGT---------------------TTCGTA--T-A-----------AATTT---------------------AAAACTGT-T-----ACCTTTTAGCCTGCTGGCCCATTGGTG---GAGGTAGATGAGATC---GTGGAG-------AAGATAGAGGT---	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGATCCTCCTTGGAAAGCCACTTTATATTAAATACCAACGCCGCAACAGGGTGAGATT--TGAT--TAGC-----------------------------------------CAAGAATTGTTT---CTT-ACTTAATTTATTTGTTTT----------TA---------ATATC----T-----TACTTTTAGCCCGCTGGTCCATTGGTG---GAGGTAGACGAGATC---GTGGAG-------AAGATAGAGGTTAC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGATCCTGCTCGGAAAGCCTTTGTACATTAAATTCAAGCGCCGAAACAGGGTAATGCATG--ATTATGTGCATTTC--------------TT-AGATTGTAA------------------------AAT-ACTT----------------------AATAAA-------ATG----CAT-----CTGTTTCAGCCCGTTGGCCCAGTAGTA---GAGGTAGACGAGATC---GTGGAG-------AAGATCGAGGT---	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGT---TGGCCGGCAAGCCGCTGTATTTGCTAAGAACGCGCAGGAAAA-------ACAA-------------------------------AG-GGCCAGGGA-------------------------------------------------------------------------------------TCTTAAGCCGCTGCGCCGGCAGAC---AATCCGGGAGATGCGATCCACGATGTGGTACTCCACGGACGA---	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GGATCCTGCTCGGAAAGCCTCTGTACATTAAATACCATCGCCGCAACAAGGTAAGATTT-------------------------------TG-GGA--------AACATCTTT-------------ATT-TTTT----------------------AATGAC-------ATATATGTGTTATCGACCCATTAGCCAGCTGGTCCAGTGGTG---GAGGTCGATGAGATC---GTGGAG-------AAGATTGAGGT---	Size	Hit Count	Total Norm	Total
No Reads

dm3

GGATTCTGCTTGGAAAACCTCTATACATTAAATACCAACGCCGAAACAGGGTAAATTAT-------------------------------TG-GGACTGTCAT-AATTGCCCA-------------ATT-ACCT----------------------AATAAT-------ATATCTATAT-----ACCTTCTAGCCTGCTGGACCAGTGGAG---GAAGTGGACGAGATC---GTAGAG-------AAGATAGAGGT---	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................................................................................................................GACGAGATC---GTAGAG-------AAGATA........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TGGACGAGATC---GTAGAG-------AAGAT.........	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AGTGGACGAGATC---GTAGAG-------A.............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GGAAAACCTCTATACATTAAATACCAA.............................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................AAGTGGACGAGATC---GTAGAG-------A.............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................ATACATTAAATACCAACGCC.........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AGTGGACGAGATC---GTAGAG-------AAG...........	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................GAAGTGGACGAGATC---GTAGAG-------AAGATA........	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.......................TACATTAAATACCAACGCCGAAACAGG.................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................GTGGAG---GAAGTGGACGAA.................................	18	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GGATTCTGCTTGGAAAACCTCTATACATTAAATACCAACGCCGCAACAGGGTAAGTTAT-------------------------------TG-GGACTGTGAT-AATTACCCA-------------ATT-ACTT----------------------TGTAAT-------ATATCTGTAT-----ACCTTCTAGCCTGCTGGACCAGTGGTG---GAAGTGGACGAGATC---GTAGAG-------AAGATAGAGGTGAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................................................................................................GGACGAGATC---GTAGAG-------AAG...........	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................ACGAGATC---GTAGAG-------AAGATAGAGGT...	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AGTGGACGAGATC---GTAGAG-------AAG...........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................A-------------ATT-ACTT----------------------TGTAAT-------ATAT......................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GGTG---GAAGTGGACGAGATC---GTAGAG-------AA............	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GGTG---GAAGTGGACGAGATC---GTA........................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AGTGGACGAGATC---GTAGAG-------A.............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................GGACGAGATC---GTAGAG-------AAGATA........	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TATACATTAAATACCAACGCC.........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................G---GAAGTGGACGAGATC---GTAGA......................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GGATTCTGCTTGGAAAACCTCTATACATTAAATACCAACGCCGCAACAGGGTAAGTTAT-------------------------------TG-GGACTGTGAT-AATTACCCA-------------ATT-ACCT----------------------CGTAAT-------ATATCTATAT-----ACCTTCTAGCCTGCTGGACCAGTGGTG---GAAGTGGACGAGATC---GTAGAG-------AAGATAGAGGTGAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................ATACATTAAATACCAACGCC.........................................................................................................................................................................................................................	20	1	2.00	2	0	0	2	0
............................................................................................................................................................................................................AGTGGTG---GAAGTGGACGAGATC---GTAGA......................	27	1	2.00	2	0	2	0	0
...............................................................................................................................................................................................................GGTG---GAAGTGGACGAGATC---GTAGA......................	24	1	1.00	1	0	0	1	0
........................................................................................................................................................................................................................AGTGGACGAGATC---GTAGAG-------AAGATA........	25	1	1.00	1	0	1	0	0
...................................................................................................................................................................................................................................TC---GTAGAG-------AAGATAGAGGTGAC	22	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................GATC---GTAGAG-------AAGATAGAGGTGAC	24	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................GAAGTGGACGAGATC---GTAGAG-------..............	21	1	1.00	1	0	1	0	0
...............................................................................................................................................................................................................................GAGATC---GTAGAG-------AAGATAGAGGT...	23	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................GTG---GAAGTGGACGAGATC---...........................	18	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................GGTG---GAAGTGGACGAGATC---...........................	19	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................................................AGAG-------AAGATAGAGGTGAC	18	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................TC---GTAGAG-------AAGATAGAGG....	18	1	1.00	1	0	0	1	0

droYak3

GGATTCTGCTTGGAAAACCTCTATACATTAAATACCAACGCCGCAACAGGGTAAATTAT-------------------------------TG-GGACTGGAAT-AATTAGCCA-------------ATT-GCCT----------------------AATAAT-------AAATC----C-----ACCTTCCAGCCTGCTGGACCAGTGGTG---GAGGTGGACGAGATC---GTAGAG-------AAGATTGAGGTGAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.GATTCTGCTTGGAAAACCT...............................................................................................................................................................................................................................................	19	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................GGACCAGTGGTG---GAGGTGGACGA..................................	23	1	3.00	3	0	2	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................GGTG---GAGGTGGACGAGAT...............................	18	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
..................................................................................................................................................................................................................G---GAGGTGGACGAGATC---GTAGA......................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..................................................................................................................................................................................................CTGCTGGACCAGTGGTG---GAGGT........................................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.......................................................................................................................................................................................................GGACCAGTGGTG---GAGGTGGAC....................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................GGTGGACGAGATC---GTAGAG-------..............	19	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.GATTCTGCTTGGAAAACCTCT.............................................................................................................................................................................................................................................	21	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................GTAGAG-------AAGATTGAGGTGAC	20	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................GGACGAGATC---GTAGAG-------AAG...........	19	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................G---GAGGTGGACGAGATC---GTAGAG-------..............	22	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................GGACCAGTGGTG---GAGGTGGACGAG.................................	24	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................GGTG---GAGGTGGACGAGATC---GTAGAG-------A.............	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................GGTG---GAGGTGGACGAGATC---...........................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................GATC---GTAGAG-------AAGATTGAGGT...	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................GAGGTGGACGAGATC---GTAGA......................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................GACCAGTGGTG---GAGGTGGAC....................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................G---GAGGTGGACGAGATC---GTA........................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
GGATTCTGCTTGGAAAAC.................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................AAATACCAACGCCGCAACAGGC................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GACCAGTGGTG---GAGGTGGACGA..................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................GAGGTGGACGAGATC---GTAGAG-------AA............	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................ATC---GTAGAG-------AAGATTGAGGA...	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................GGTGGACGAGATC---GTAGAG-------AAGAT.........	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................GGTGGACGAGATC---GTAGAG-------AA............	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................GACGAGATC---GTAGAG-------AAGATTGAG.....	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................GGTG---GAGGTGGACGAGATC---GTAGA......................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GACCAGTGGTG---GAGGTGGACGAGATC---...........................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TGCTGGACCAGTGGTG---GAGGTGGACGA..................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................CCTGCTGGACCAGTGGTG---GA...........................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GACGAGATC---GTAGAG-------AAGATTGAGGT...	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................GACCAGTGGTG---GAGGTGGACGAGAT...............................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................ATACATTAAATACCAACGCC.........................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AGATC---GTAGAG-------AAGATTGAGGT...	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................AGTGGTG---GAGGTGGACGAGAT...............................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......TGCTTGGAAAACCTCTATACAT.......................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GACCAGTGGTG---GAGGTGGACGAG.................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............AACCTCTATACATTAAATACCAACGCC.........................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................C---GTAGAG-------AAGATTGAGGT...	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................ATACATTAAATACCAACGCCGCAAC....................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................GTGGTG---GAGGTGGACGAGATC---GTAGA......................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..ATTCTGCTTGGAAAACCTCTATACATT......................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................GAGGTGGACGAGATC---GTAGAG-------..............	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................AGAG-------AAGATTGAGGTGAC	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................ATACCAACGCCGCAACAGGC................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................GACCAGTGGTG---GAGGTGGACGAGATC---GT.........................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

GGATTCTGCTTGGAAAACCTCTGTACATTAAATACCAACGCCGCAACAGGGTAAGTTAT-------------------------------TG-GGACTGGAAT-AATGATCCA-------------ATT-GCCT----------------------AATAAT-------ATATC----------CACCTTTAGCCTGCTGGACCAGTGGTG---GAGGTGGACGAGATC---GTAGAG-------AAGATAGAGGTGAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................................................................................................................................................................GGACGAGATC---GTAGAG-------AAGATA........	22	1	2.00	2	2	0	0	0	0	0	0
..................................................................................................................................................................................................CTGCTGGACCAGTGGTG---GAGGT........................................	22	1	1.00	1	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................TGGACGAGATC---GTAGAG-------AAGAT.........	22	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................GATC---GTAGAG-------AAGATAGA......	18	1	1.00	1	1	0	0	0	0	0	0
.............AAAACCTCTGTACATTAAATACCAACGC..........................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
....................CTGTACATTAAATACCAACGCC.........................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................GTGGACGAGATC---GTAGAG-------AAG...........	21	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................GAGGTGGACGAGATC---GTAGA......................	20	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................GGTGGACGAGATC---GTAGA......................	18	1	1.00	1	0	0	0	1	0	0	0
......................GTACATTAAATACCAACGCCGCAAC....................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................GGTGGACGAGATC---GTAGAG-------..............	19	1	1.00	1	0	0	0	0	1	0	0
...............................ATACCAACGCCGCAACAGGCC...............................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................GACGAGATC---GTAGAG-------AAGATAGA......	23	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................GGACCAGTGGTG---GAGGTGGACGAG.................................	24	1	1.00	1	1	0	0	0	0	0	0
.GATTCTGCTTGGAAAACCT...............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
........................ACATTAAATACCAACGCCGC.......................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................GGACGAGATC---GTAGAG-------AAGATAGAG.....	25	1	1.00	1	1	0	0	0	0	0	0

dwi_2428

scf2_1100000004902:1056141-1056206 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads