dwi_2408

Name	Class	Family	Strand
Transib1_Dmoj	DNA	CMC-Transib	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ACATATTTTTCATATGCATAGTGCCGCTACAATTACAATTGGAAACCAGCGTACTTTGGCAAAATCCTCGCCCGGCATCGACTCGGTATTGTAGACCATTAAAAATAATGTTTGCTAAAGAGTCTACAGAATTGGTTAGAGCGGAAATTGAAAAAATGAATTCACAGATATTGAAAATTGTGCCTACGCGCTTAAGTAGCTTTCAAGTTTACCACAAATTGCAACTTACCATGATCGATGGCAAAGTTTTT ************************************************.......((.........(((..((((.(((.((((((((((.((.((((.....((((.((((((.......((........))....)))))).))))....))))...)))))).))))))...)))))))...))).........))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V118 embryo	V117 male body
..............................................................................................................................CTCAATTGGTTAGAGCGG...........................................................................................................	18	2	20	2.55	51	50	0	1
....ATTTTTCATATGCATAGTGCCGCTA..............................................................................................................................................................................................................................	25	0	3	0.33	1	1	0	0
...........................................................................................................................................................................................................................TGCAACTTACCATGATCGATGGCAAAG.....	27	0	3	0.33	1	0	1	0
................................................................................................................................CAATTGGTTAGAGCGGGA.........................................................................................................	18	2	12	0.08	1	1	0	0
.............................................................................................................................................................GAATTCACAGATGTTGAGC...........................................................................	19	3	20	0.05	1	0	0	1

TGTATAAAAAGTATACGTATCACGGCGATGTTAATGTTAACCTTTGGTCGCATGAAACCGTTTTAGGAGCGGGCCGTAGCTGAGCCATAACATCTGGTAATTTTTATTACAAACGATTTCTCAGATGTCTTAACCAATCTCGCCTTTAACTTTTTTACTTAAGTGTCTATAACTTTTAACACGGATGCGCGAATTCATCGAAAGTTCAAATGGTGTTTAACGTTGAATGGTACTAGCTACCGTTTCAAAAA ************************************************.......((.........(((..((((.(((.((((((((((.((.((((.....((((.((((((.......((........))....)))))).))))....))))...)))))).))))))...)))))))...))).........))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V118 embryo	V117 male body
................................................................................................................................................................................................................AATGGTGTTTAACGTTGAATGGTACT.................	26	0	3	0.33	1	0	1	0
.......................................................................................................................................................TTTTTACTTAAGTGTCTATAACTTTT..........................................................................	26	0	5	0.20	1	1	0	0
.............................................................................................................................................................................................CGAATTCATCAATAGTTCAAG.........................................	21	3	6	0.17	1	1	0	0
.........................................................ACGTTTTTGGAGCGGGACGTA.............................................................................................................................................................................	21	3	6	0.17	1	0	0	1
...........................................................................................................................................................................................CGCGAATTCATCAATAGTGC............................................	20	3	7	0.14	1	1	0	0
...............................................................................................................................................................................................................................TGAACCGTACTAGCTACC..........	18	2	11	0.09	1	0	1	0
.........................................................CCGTGTCAGGGGCGGGCCG...............................................................................................................................................................................	19	3	15	0.07	1	0	1	0
..........................................................CGTTTTAGGGGCAGGCGG...............................................................................................................................................................................	18	3	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004899:21171-21421 +	dwi_2408	ACAT---------------ATTTTTCATATGCATAGTGCCGCTACAATTACAATTGGA------AACCAGCGTACTTTGGCAAAATCCTCGCCCGGCATCGACTCGGTATTGTAGACCATTAAAAATAATGTTTGCTAAAGAGTCTACAGAATT-----GGTTAGAGCGGAAATTGAAAAAATGAATTCA-----------------------CAGATATTGAAAATTGTGCCTACGCGCTTAAGTAG-CTTTCAAGTTTACCACAAATTGCAACTTACCATGATCGATGGCAAAGTTTTT
droMoj3	scaffold_6540:345903-346151 +		ACAT---------------ATTTTTCATATGCATAGTACTGCTACAATTACAATATGA------AAGCATAGTACTTTGGAAGAATCCTCGCCCGGAATCGACTCGGTATTGTAGACCTTTAAAAATAATGTTTGCCAAAGAATCAACAGAATT-----GGTTAGAGCGGAAATTGAAAAAA--AAATCA-----------------------CAGATATTGCAAATTGTTCCTACGCGCTTAAGTAG-TTTTCAAGTTCACCACAAATTGCAACTTACCATGATCGATGGCAAAGTCTTA
dp5	Unknown_group_30:19054-19317 +		AAAGTTT------------ATTTGTCACATAGTACGTCCCACTTCAGCTTGTAACCGA------CTCTAAGATAATATGGAAAAATGCCAGGCCATCGTCTACCCGATATTGTAGACCACTCAGACGTCAATTTAAAATGGAGACCGCCGCACT-----TTCCGTCGAAGAAGAGCTCTACTTCAAGGAGAAAATAGCTGAC--AAAGACAA-------CTGAGCATAAAATTAGCAAT----ACAAA-ATTTTCTGTAAAGCACGCCTTTCAATTAACTATGGTGGATGGTAAAGTTTGC
droPer2	scaffold_492:16158-16396 +		ACTT---------------CTTTGCAATCTGCCTTGTACCTCTGCGTGTACATCTAGG------AACTTCAATAACTTGGAAAAATAAGCGCCCTTCTTCGACTCGTTATTGCAGGCGAATACAAATTATTTTTGAAAAGCAGACTGCAGATCT-----AATGCATATAGATGTGAAAACTATGAAGATT-----------------------CAAATCTCCAATTTAGTACCAATAGTACTCTCGTC-TTTTAAAATTGAACACAATTTGCAAAT------ACTTTATTGTAAA------
droAna3	scaffold_3720:3121-3371 +		ATTT---------------ATTTTAAATTTGTATAGTGCCATTGACAGTGCAGAAAGA------ACTGAAAGTTTTATGGAAAAACAATAGACTTTCATCTACTCGATATTGTCGACCCATTAAGATAATTTGCTAGAAAGAATCGGCAGAGTT-----AATTCGTAGAGAAAGTGAAGATATTAAAAGC-----------------------CAAATTTCAAATATTTTACCAACATTATTGATTGG-CTTTAGAATTGATCACCAATTCCATATGACCATGCTAGATGGCAAAACGTTC
droBip1	scf7180000395003:7368-7619 -		ATGT---------------ATTTTTTATTTGTATTGTACCTTTACAATTAAAATTGGG------TAATGACATTCTTTGGCAAAATCCTCGCCCATCATCAACTCGTTACTGTAGACCTCTTAAAATAATGTTTGCAAAAGAGTCTACTGAGTT-----GGTAAGAGCCGAAACAGAGAAGATACAGGAG-----------------------CAGATTCTTCAAATTCTGCCTACGAGATTGAGCTGCTTTTTAAGTTAATCATAAATTGGAGCTGACAATGATAGACGGAAAAGTGTTT
droKik1	scf7180000299217:2854-3103 -		ATGT---------------GTTTTTCATTTGTATTGTGCCTTTGCAACTGAAATTGGG------TAATGCCATTA-TTGGCAGAATCCTCGCCCATCATCGACTCGTTACTGTAGACCTCTTAAAATAATGTTTGCAAAAGAGTCTACTGAGTT-----GGTAAGAGTCGAAATAGAGAACATACAGGCG-----------------------CAAATTTCTCGAATTGTGCCTACGAGATTGAGCAG-GTTTCAAGTTAACCACAAATTAGAGCTGACAATGATCGACGGAAAAGTGTTA
droFic1	scf7180000454146:14374-14624 -		ACCT---------------ATTTTCTGTCTGTCTTGTTCCTTTGCAAGTGCAGCTTGG------AGTTAAAATTTTGTCGAAGAACGATAGACCTTCATCAACTCGATATTGTCAGCCCATTAAGCTAATTTGCCAAAAGGAATCGACTGAATT-----AATTATTTCTGAGACTGAAAATATAAATAGT-----------------------CAAATATTAGCAATTAAACCAACAATAACCGATTC-GTATACAATTTTCCATAAATTTAACATGACCATGTTGGATGGAAAAACATTT
droEle1	scf7180000491280:2757738-2758000 -		CTGT---------------ATTTATCACTTCTATTGTGCCCATTAAAATGACATGCGA------AAACCGCGTTATATGGAAAAATCCTTGCCCTGGCTCAGCACGGTTTTGTAGACCTTTAAGAATTGAATTTACAAAGGAAAATTCCAGTGT-----TGCGCCAAAGGAAAGTAACCGAGTAGCGGAAGAAATTCGTGAG-----------CTAACTAAGACTGTTGTTCAGATTTTAGGTGATGT-GGTTGAAGTAAGCCATCAACTGATGCTCTTAATGATTGACGGGAGAGTTTGC
droRho1	scf7180000773469:17857-18095 -		ATGT---------------GTTTTTCATTTG-----TGCCTTTA-AATTGAAATTGGG------TAATGACATTATTTGGCAAAATCCTCGCCCATCATCGACTCGTTACTGTAGACCTCTTAAAATAATGTTCGCAAAAGAGTCTACTGAGTT-----GGTACAAGCCGAAATAGAGAACAT------A-----------------------CAGATTTTAAGAATTGTACCTACGAGATTGAGCCG-GTTTCAAGTTAGCCACAAATTGGAGCTGACAATGATCGACGGAAAATTGTTA
droBia1	scf7180000300606:9382-9632 +		ATTT---------------ATTTTCCATTTGTATAGTCACATTAACAGTGTAGAACGG------ACCGATAGTTTTATCGAAAAATTATGGACCTTCTTCTACTCAATATTGTCGACCCATTAACATAATTTGCGAGAAAGAATCGGCAGACTT-----AATTCGCAGAGAAAGTGAAAGTATTAATAGC-----------------------CAAATATGAAATATTTTACCAACATTAGTGAGTGG-CTTTAGAATTTATCACCAATTTCATATGAACATCCTTAATGGCAAAACGTTC
droTak1	scf7180000415742:12247-12497 -		ATGT---------------GTTTTTCATTTGTATTGTGCCTTTACAATTGAAATTGGG------TAATGACATTATTTGGCAAAATCCTCGCCCATCATCGACTCGTTACAGTAGACCGCTTAAAATAATGTTCGCAAAAGAGTCTACTGAGTT-----GGTACAAGCCGAAATAGAGAACATACAGGCG-----------------------CAGATTTTTAGAATTGTACCTACGAGATTGAGCCG-GTTTCAAGTTAGCCACAAATTGGAGCTGACAATGATCGACGGAAAAGTGTTT
droEug1	scf7180000409171:54540-54823 +		AGCTTTCAGATCACTCAATTTTTGTGACTTCTGTTATACCCATAAAAATTATAGTCGC---TTTTGATCACAACATATGGAATAATAGAACACCGCAATCTATTCGATTTTGCAGACCTTTAAAAATTGAACTTGTAAAAGAAACTACGGCACA-----CATAATGATGGAAAAGAACTTTTTAGATTCTCAAATTAATAATCTCAAACCTTC-------TGTTTATAAATTCAATGAGAATC-GTGA-TATAACAGTAAATTATGAAATGCACATGACACTTATTGATGGCAAAGTGCTA
dm3	chrUextra:1658847-1659016 +		T----------------------------------------------------------------------------TGGAAAAACAACAGACCATCGTCAACACGTTACTGCAGGCCAGTACGATTGCAATTT-AAAAAGAGACAACAAAACT-----TTCAATCGAAGAGGAAAAGTATTTTAAGGAA-----------------------AAAA---------------------T----AAAAA-GATAAATGTTGAACATAGCTTACAACTAGCCATGCTGGATGGGAAAATATGC
droSim2	node_30480:747-1011 +		GCT----------------GTTTGTTACTACAATTGTGCCATTAAAATTAGTAGACAA---TGAACAAAAAATTATTTGGATCAACAGATCGCCACAATCTATACGGTTTTGTCGTCCTTTAAAAATTGAATTTATTAAGGAAACTCGAGAGCT-----TATATTAGCAGAAAAAGAAAACTTGGATACCCAGATTCGTAATTTGCACATATA-------TTTGCATAAAATAAACAAC----ATTAA-AATATTTGTAAAATATGTCGGTCAAATGACACTAATAGACGGTAAAGTCTTA
droSec2	scaffold_4618:27-178 +		CATT---------------------------------------------------------------------------------------------------------------------GAAACTGATTGAGAAAAAGGAAACT--AAAATTGATTCGATAAATTCC------GATATAGTAAAAAGA-----------------------CAAATACTGGACATTCAACCAACAATTACACCCTT-ATTTACAATTTTCCACGAATTTCAAATGACCATGCTAGATGGCAAAACATTT
droYak3	v2_chr2h_random_021:45641-45866 +		TATT---------------TTTC-CAACGTCGTACGTCCCACTTCAGCTTATAGTTGAAAGTAGCTCCAAAATAATATGGAAACATCCGAGACCACCTTCTACTCGCTATTGTAGGCCAGTCAGAATTCAATTTA-------------------------ATTCAAAAAGAAAATAGAG--------------------AATCTAATGCCAA-------CTGAATTTCAAGTTCCCAAT----AAAGA-GTTATTCATCAACCATACCCTGCAACTTACTATGGTAGATGGTAACGT--AC
droEre2	scaffold_4690:18219033-18219253 +		CCCT---------------TTTTGCAGTTGGCCTTGTACCATTACAAGTTCAGCTTGA------ATCAAAGACTTTGTGGAAAAATCCGCGACCTTCATCAACACGCTGTTGTAGGCCTTTGAAACTGATTTGCGAAAAGGAAGCTATAGAATT-----TATTCGATCAGAGTCGGATATAGTAAAAAGA-----------------------CAAATACTGCCCATTCAACCAACAATTACACCCTT-AATTACAATTTCCCACGAATTT------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

ACAT---------------ATTTTTCATATGCATAGTGCCGCTACAATTACAATTGGA------AACCAGCGTACTTTGGCAAAATCCTCGCCCGGCATCGACTCGGTATTGTAGACCATTAAAAATAATGTTTGCTAAAGAGTCTACAGAATT-----GGTTAGAGCGGAAATTGAAAAAATGAATTCA-----------------------CAGATATTGAAAATTGTGCCTACGCGCTTAAGTAG-CTTTCAAGTTTACCACAAATTGCAACTTACCATGATCGATGGCAAAGTTTTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................ATTTTTCATATGCATAGTGCCGCTA.................................................................................................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................TGCAACTTACCATGATCGATGGCAAAG.....	27	3	0.33	1	0	0	0	1	0

droMoj3

ACAT---------------ATTTTTCATATGCATAGTACTGCTACAATTACAATATGA------AAGCATAGTACTTTGGAAGAATCCTCGCCCGGAATCGACTCGGTATTGTAGACCTTTAAAAATAATGTTTGCCAAAGAATCAACAGAATT-----GGTTAGAGCGGAAATTGAAAAAA--AAATCA-----------------------CAGATATTGCAAATTGTTCCTACGCGCTTAAGTAG-TTTTCAAGTTCACCACAAATTGCAACTTACCATGATCGATGGCAAAGTCTTA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

dp5

AAAGTTT------------ATTTGTCACATAGTACGTCCCACTTCAGCTTGTAACCGA------CTCTAAGATAATATGGAAAAATGCCAGGCCATCGTCTACCCGATATTGTAGACCACTCAGACGTCAATTTAAAATGGAGACCGCCGCACT-----TTCCGTCGAAGAAGAGCTCTACTTCAAGGAGAAAATAGCTGAC--AAAGACAA-------CTGAGCATAAAATTAGCAAT----ACAAA-ATTTTCTGTAAAGCACGCCTTTCAATTAACTATGGTGGATGGTAAAGTTTGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
........................................................................................................................................................................................................AC--AAAGACAA-------CTGAGCATAAAAT.....................................................................	23	1	35.00	35	0	24	0	0	0	0	0	11	0	0
....................................................................................................TACCCGATATTGTAGACCACTCAGACG..............................................................................................................................................................................	27	1	18.00	18	0	7	0	0	0	0	0	11	0	0
............................................................................................................................................................................................................................................................................TTTCAATTAACTATGGTGGATGG..........	23	1	10.00	10	0	10	0	0	0	0	0	0	0	0
...........................................................................TATGGAAAAATGCCAGGCCATCGTC.........................................................................................................................................................................................................	25	1	9.00	9	0	9	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................AC--AAAGACAA-------CTGAGCATAAAATT....................................................................	24	1	7.00	7	0	6	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................CAATTAACTATGGTGGATGGTAA.......	23	1	7.00	7	0	7	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CAATTAACTATGGTGGATGGT.........	21	1	6.00	6	0	5	0	0	1	0	0	0	0	0
....................................................................................................TACCCGATATTGTAGACCACTCAGA................................................................................................................................................................................	25	2	5.00	10	0	2	0	0	0	0	0	8	0	0
..............................................................................................................................................................................................................................................T----ACAAA-ATTTTCTGTAAAGCACGCCT................................	26	1	4.00	4	0	2	2	0	0	0	0	0	0	0
............................................CAGCTTGTAACCGA------CTCTAAGATA...................................................................................................................................................................................................................................	24	1	4.00	4	0	4	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CAATTAACTATGGTGGATGGTAAA......	24	1	4.00	4	0	4	0	0	0	0	0	0	0	0
................................................................CTCTAAGATAATATGGAAAAATGCC....................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	0	4	0	0
...............................................................................................TCGTCTACCCGATATTGTAGACCACTC...................................................................................................................................................................................	27	1	3.00	3	0	3	0	0	0	0	0	0	0	0
...........................................................................................................TATTGTAGACCACTCAGACGTCAATT........................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	3	0	0
...............................................................................................................................................................................................................................................................................CAATTAACTATGGTGGATGG..........	20	1	3.00	3	0	1	0	0	2	0	0	0	0	0
.........................................................................................................GATATTGTAGACCACTCAGACGTCAATT........................................................................................................................................................................	28	1	3.00	3	0	0	0	0	0	0	0	3	0	0
...............................................................................................................................................................................................................................................................................CAATTAACTATGGTGGATGGTA........	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................AAATAGCTGAC--AAAGACAA-------CTGAGCAT..........................................................................	27	1	3.00	3	0	0	0	0	0	0	0	3	0	0
............................................CAGCTTGTAACCGA------CTCTAAGA.....................................................................................................................................................................................................................................	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0
................................................................................................................................................................TCCGTCGAAGAAGAGCTCTACTTCAA...................................................................................................................	26	1	3.00	3	0	2	0	0	0	0	0	1	0	0
...................................................................................................CTACCCGATATTGTAGACCACTC...................................................................................................................................................................................	23	1	3.00	3	0	3	0	0	0	0	0	0	0	0
................................................................................................................................................................TCCGTCGAAGAAGAGCTCTACT.......................................................................................................................	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0
........................................................................................................................TCAGACGTCAATTTAAAATGGAGA.............................................................................................................................................................	24	1	3.00	3	0	3	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CAATTAACTATGGTGGATGGTAAAGT....	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................................TACGTCCCACTTCAGCTTGTAACCG....................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	2	0	0
...........................................................................................................................................................................................................................................................................CTTTCAATTAACTATGGTGGA.............	21	1	2.00	2	0	0	0	0	0	0	0	2	0	0
................................................................................................................................................................TCCGTCGAAGAAGAGCTCTACTT......................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................CAGCTTGTAACCGA------CTCTAAGATAAT.................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CAATTAACTATGGTGGATGGTAAAG.....	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................AAATAGCTGAC--AAAGACAA-------CTGAGCA...........................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
......T------------ATTTGTCACATAGTACGTCCCACT..................................................................................................................................................................................................................................................................	25	1	2.00	2	0	1	0	0	0	0	0	1	0	0
........................................................................................................................................................................................................AC--AAAGACAA-------CTGAGCATAAAA......................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................TCACATAGTACGTCCCACTTCAGC.............................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	0	0	0	0	0	1	0	0
....................................................................................................TACCCGATATTGTAGACCACTCAGAC...............................................................................................................................................................................	26	2	2.00	4	0	1	1	0	0	0	0	2	0	0
................................................................................................................................................................TCCGTCGAAGAAGAGCTCTACTTCA....................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CTGAC--AAAGACAA-------CTGAGCATAAA.......................................................................	24	1	2.00	2	0	0	0	0	0	0	0	2	0	0
..........................................................................................................ATATTGTAGACCACTCAGACGTCAATT........................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	2	0	0
.....TT------------ATTTGTCACATAGTACGTCCCACT..................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................TTCCGTCGAAGAAGAGCTCTACTT......................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................TCCGTCGAAGAAGAGCTCTAC........................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................TTTCAATTAACTATGGTGGATG...........	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................AC--AAAGACAA-------CTGAGCATAAAATTA...................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
....................................................................................................TACCCGATATTGTAGACCACT....................................................................................................................................................................................	21	2	1.50	3	0	0	0	0	0	0	0	3	0	0
.......................................................................................................................................................................................................GAC--AAAGACAA-------CTGAGCATAAAAT.....................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................TTCAGCTTGTAACCGA------CTCTAAGATAA..................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0
..................................................................CTAAGATAATATGGAAAAATGCC....................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................ATAGCTGAC--AAAGACAA-------CTGAG.............................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................TCAGACGTCAATTTAAAATGGAG..............................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0
...................................................................TAAGATAATATGGAAAAATGCCAGGC................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................CTACCCGATATTGTAGACCACTCA..................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................CTGTAAAGCACGCCTTTCAATTAACTA....................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.....................................................ACCGA------CTCTAAGATAATATGGAA...........................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................CGTCGAAGAAGAGCTCTACTT......................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................CTGAC--AAAGACAA-------CTGAGCATAA........................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................AC--AAAGACAA-------CTGAGCATAAAATTAGCA................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................GGAAAAATGCCAGGCCATCGTCTA.......................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................TCCGTCGAAGAAGAGCTCT..........................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................TCTACCCGATATTGTAGACCACT....................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................CACATAGTACGTCCCACTTCAGC.............................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................AATGCCAGGCCATCGTCTACCCGATA................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................TGCCAGGCCATCGTCTACCCG...................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................TAACCGA------CTCTAAGATAATATGGAAAAA........................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................................................T-----TTCCGTCGAAGAAGAGCTC...........................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................CTATGGTGGATGGTAAAGT....	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................TAAGATAATATGGAAAAATGCCAGG.................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CTCTACTTCAAGGAGAAAATAGCTG.....................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................AATTAACTATGGTGGATGG..........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......T------------ATTTGTCACATAGTACGTCCCAC...................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CTGAGCATAAAATTAGCAAT----ACA.......................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................CATCGTCTACCCGATATTGTAGACCAC.....................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................GACAA-------CTGAGCATAAAATTAGCA................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................TGGAAAAATGCCAGGCCATCGTCTACC.....................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................TTTAAAATGGAGACCGCCGCACT-----T.............................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................AGCTTGTAACCGA------CTCTAAGA.....................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................TATGGAAAAATGCCAGGCCATCGTCTA.......................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................AC--AAAGACAA-------CTGAGCATAA........................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................CACT-----TTCCGTCGAAGAAGAGCTCTACT.......................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CTGAGCATAAAATTAGCAAT----ACAAA-....................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................TCAATTTAAAATGGAGACCGCCG.......................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................CTACCCGATATTGTAGACCACTCAA.................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................CT-----TTCCGTCGAAGAAGAGCTC...........................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................AGAGCTCTACTTCAAGGAGAAAATAGC.......................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................TAAGATAATATGGAAAAATGCCAGGCCA..............................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.AAGTTT------------ATTTGTCACATAGTA...........................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................CAGCTTGTAACCGA------CTCTAAGATAA..................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................T-----TTCCGTCGAAGAAGAGCTCTACTT......................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AAGACAA-------CTGAGCATAAAATTAG..................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................AC--AAAGACAA-------CTGAGCATAAAATTAG..................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................AATTAACTATGGTGGATGGT.........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................CCGCACT-----TTCCGTCGAAGAAG................................................................................................................................	21	2	1.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................CCCGATATTGTAGACCACTCAGACG..............................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................TCACATAGTACGTCCCACTTC................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................TCCGTCGAAGAAGAGCTCTACA.......................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................AAGATAATATGGAAAAATGCCAGGC................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0
........................................................................................................................TCAGACGTCAATTTAAAATGGAGAC............................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................TATGGAAAAATGCCAGGCCATCG...........................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................TGGAAAAATGCCAGGCCATCGTCTACCC....................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................ACCACTCAGACGTCAATTTAAAATGG................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................CTACCCGATATTGTAGACCACT....................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................TGGAAAAATGCCAGGCCATCGTC.........................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................TCGTCTACCCGATATTGTAGACCA......................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................TCTACCCGATATTGTAGACCACTCA..................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................AAAGCACGCCTTTCAATTAACTATGG.................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................CTATGGTGGATGGTAAAGTTTG.	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................CTACCCGATATTGTAGACCACTCAGA................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................CGTCAATTTAAAATGGAGACCGC.........................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................TTAAAATGGAGACCGCCGCAC....................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................CGTCGAAGAAGAGCTCTACTTC.....................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................C--AAAGACAA-------CTGAGCATAAAAT.....................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................AC--AAAGACAA-------CTGAGCATA.........................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CAATTAACTATGGTGGATGGTAAAAAA...	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................TTCCGTCGAAGAAGAGCTCTACTTC.....................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................GCCGCACT-----TTCCGTCGAAGAAGAGC.............................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................TACCCGATATTGTAGACCACTCAGACC..............................................................................................................................................................................	27	2	0.50	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................CGATATTGTAGACCACTCAGA................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................TACCCGATATTGTAGACCACTC...................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................TACCCGATATTGTAGACCACTCAG.................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	1	0	0
....................................................................................................TACCCGATATTGTAGACCACTCA..................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	1	0	0
....................................................................................................TACCCGATATTGTAGACCACTCAGAA...............................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	1	0	0

droPer2

ACTT---------------CTTTGCAATCTGCCTTGTACCTCTGCGTGTACATCTAGG------AACTTCAATAACTTGGAAAAATAAGCGCCCTTCTTCGACTCGTTATTGCAGGCGAATACAAATTATTTTTGAAAAGCAGACTGCAGATCT-----AATGCATATAGATGTGAAAACTATGAAGATT-----------------------CAAATCTCCAATTTAGTACCAATAGTACTCTCGTC-TTTTAAAATTGAACACAATTTGCAAAT------ACTTTATTGTAAA------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

ATTT---------------ATTTTAAATTTGTATAGTGCCATTGACAGTGCAGAAAGA------ACTGAAAGTTTTATGGAAAAACAATAGACTTTCATCTACTCGATATTGTCGACCCATTAAGATAATTTGCTAGAAAGAATCGGCAGAGTT-----AATTCGTAGAGAAAGTGAAGATATTAAAAGC-----------------------CAAATTTCAAATATTTTACCAACATTATTGATTGG-CTTTAGAATTGATCACCAATTCCATATGACCATGCTAGATGGCAAAACGTTC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................CAATTCCATATGACCATGCTAGATG...........	25	2	0.50	1	1	0	0	0	0	0
....................................................................................................................................................................................TATTAAAAGC-----------------------CAAATTTCAAATATT.........................................................................	25	20	0.45	9	0	9	0	0	0	0
.................................TAGTGCCATTGACAGTGCAGAA......................................................................................................................................................................................................................................................	22	5	0.20	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................TTGATCACCAATTCCATATGACCATG..................	26	20	0.15	3	0	3	0	0	0	0
.....................................................................................................................................................GAGTT-----AATTCGTAGAGAAAGTGA............................................................................................................................	23	9	0.11	1	1	0	0	0	0	0
..................................................................................................................................................GCAGAGTT-----AATTCGTAGAGAAAGTGA............................................................................................................................	26	9	0.11	1	1	0	0	0	0	0
..................................................................................................................................................GCAGAGTT-----AATTCGTAGAGAAAGT..............................................................................................................................	24	11	0.09	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................TGATCACCAATTCCATATGACCATGCT................	27	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................TGATCACCAATTCCATATGACCATGCC................	27	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................TGG-CTTTAGAATTGATCACCAATTCCA............................	27	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................TGATCACCAATTCCATATGACCATG..................	25	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................TTGATCACCAATTCCATATGACCATGCC................	28	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................TTGATCACCAATTCCATATGACCATGCT................	28	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................TTAGAATTGATCACCAATTCCATATGAC......................	28	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................TATTAAAAGC-----------------------CAAATTTCAAATATTT........................................................................	26	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................TAGAATTGATCACCAATTCCATATGACC.....................	28	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................CAATTCCATATGACCATGCT................	20	20	0.05	1	0	1	0	0	0	0

droBip1

ATGT---------------ATTTTTTATTTGTATTGTACCTTTACAATTAAAATTGGG------TAATGACATTCTTTGGCAAAATCCTCGCCCATCATCAACTCGTTACTGTAGACCTCTTAAAATAATGTTTGCAAAAGAGTCTACTGAGTT-----GGTAAGAGCCGAAACAGAGAAGATACAGGAG-----------------------CAGATTCTTCAAATTCTGCCTACGAGATTGAGCTGCTTTTTAAGTTAATCATAAATTGGAGCTGACAATGATAGACGGAAAAGTGTTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATGT---------------GTTTTTCATTTGTATTGTGCCTTTGCAACTGAAATTGGG------TAATGCCATTA-TTGGCAGAATCCTCGCCCATCATCGACTCGTTACTGTAGACCTCTTAAAATAATGTTTGCAAAAGAGTCTACTGAGTT-----GGTAAGAGTCGAAATAGAGAACATACAGGCG-----------------------CAAATTTCTCGAATTGTGCCTACGAGATTGAGCAG-GTTTCAAGTTAACCACAAATTAGAGCTGACAATGATCGACGGAAAAGTGTTA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACCT---------------ATTTTCTGTCTGTCTTGTTCCTTTGCAAGTGCAGCTTGG------AGTTAAAATTTTGTCGAAGAACGATAGACCTTCATCAACTCGATATTGTCAGCCCATTAAGCTAATTTGCCAAAAGGAATCGACTGAATT-----AATTATTTCTGAGACTGAAAATATAAATAGT-----------------------CAAATATTAGCAATTAAACCAACAATAACCGATTC-GTATACAATTTTCCATAAATTTAACATGACCATGTTGGATGGAAAAACATTT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTGT---------------ATTTATCACTTCTATTGTGCCCATTAAAATGACATGCGA------AAACCGCGTTATATGGAAAAATCCTTGCCCTGGCTCAGCACGGTTTTGTAGACCTTTAAGAATTGAATTTACAAAGGAAAATTCCAGTGT-----TGCGCCAAAGGAAAGTAACCGAGTAGCGGAAGAAATTCGTGAG-----------CTAACTAAGACTGTTGTTCAGATTTTAGGTGATGT-GGTTGAAGTAAGCCATCAACTGATGCTCTTAATGATTGACGGGAGAGTTTGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATGT---------------GTTTTTCATTTG-----TGCCTTTA-AATTGAAATTGGG------TAATGACATTATTTGGCAAAATCCTCGCCCATCATCGACTCGTTACTGTAGACCTCTTAAAATAATGTTCGCAAAAGAGTCTACTGAGTT-----GGTACAAGCCGAAATAGAGAACAT------A-----------------------CAGATTTTAAGAATTGTACCTACGAGATTGAGCCG-GTTTCAAGTTAGCCACAAATTGGAGCTGACAATGATCGACGGAAAATTGTTA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATTT---------------ATTTTCCATTTGTATAGTCACATTAACAGTGTAGAACGG------ACCGATAGTTTTATCGAAAAATTATGGACCTTCTTCTACTCAATATTGTCGACCCATTAACATAATTTGCGAGAAAGAATCGGCAGACTT-----AATTCGCAGAGAAAGTGAAAGTATTAATAGC-----------------------CAAATATGAAATATTTTACCAACATTAGTGAGTGG-CTTTAGAATTTATCACCAATTTCATATGAACATCCTTAATGGCAAAACGTTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATGT---------------GTTTTTCATTTGTATTGTGCCTTTACAATTGAAATTGGG------TAATGACATTATTTGGCAAAATCCTCGCCCATCATCGACTCGTTACAGTAGACCGCTTAAAATAATGTTCGCAAAAGAGTCTACTGAGTT-----GGTACAAGCCGAAATAGAGAACATACAGGCG-----------------------CAGATTTTTAGAATTGTACCTACGAGATTGAGCCG-GTTTCAAGTTAGCCACAAATTGGAGCTGACAATGATCGACGGAAAAGTGTTT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AGCTTTCAGATCACTCAATTTTTGTGACTTCTGTTATACCCATAAAAATTATAGTCGC---TTTTGATCACAACATATGGAATAATAGAACACCGCAATCTATTCGATTTTGCAGACCTTTAAAAATTGAACTTGTAAAAGAAACTACGGCACA-----CATAATGATGGAAAAGAACTTTTTAGATTCTCAAATTAATAATCTCAAACCTTC-------TGTTTATAAATTCAATGAGAATC-GTGA-TATAACAGTAAATTATGAAATGCACATGACACTTATTGATGGCAAAGTGCTA	Size	Hit Count	Total Norm	Total
No Reads

dm3

T----------------------------------------------------------------------------TGGAAAAACAACAGACCATCGTCAACACGTTACTGCAGGCCAGTACGATTGCAATTT-AAAAAGAGACAACAAAACT-----TTCAATCGAAGAGGAAAAGTATTTTAAGGAA-----------------------AAAA---------------------T----AAAAA-GATAAATGTTGAACATAGCTTACAACTAGCCATGCTGGATGGGAAAATATGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................................................................................AAAACAACAGACCATCGTCAACACGT..................................................................................................................................................................................................	26	14	9.29	130	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	3	2	0	0	2	0	4	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	1	18	0	6	1	1	3	1	0	3	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	3	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	3	0	0	0	0	0	7	0	2	2	1	0	8	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	7	0	0	0	0	0	0	0	0	1	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	11	3	1	0	0	0	0	0	0
.......................................................................................ACAGACCATCGTCAACACGTT.................................................................................................................................................................................................	21	15	8.20	123	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	23	0	0	5	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	20	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................T----AAAAA-GATAAATGTTGAACATAGCT................................	26	14	4.93	69	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	4	0	0	0	0	0	1	0	4	1	0	0	4	0	0	0	1	0	0	0	5	0	23	0	5	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TAGCCATGCTGGATGGGAAAATATGC	26	12	4.83	58	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	1	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	1	2	0	0	0	0	3	1	2	2	5	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	1	0	1	0	0	0	0	0	0	3	5	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................A-GATAAATGTTGAACATAGCT................................	21	14	4.71	66	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	10	0	0	6	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	16	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................AAAAA-GATAAATGTTGAACAT....................................	21	14	3.86	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	6	0	0	2	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	11	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................AACTAGCCATGCTGGATGGGA........	21	12	3.42	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	3	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	7	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................AACAGACCATCGTCAACACGT..................................................................................................................................................................................................	21	14	3.14	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	1	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	7	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0
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...............................................................................................................................................................................AAGTATTTTAAGGAA-----------------------AAAA---------------------T----A.........................................................	21	14	0.14	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................AAAA-GATAAATGTTGAAC......................................	18	14	0.14	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................A---------------------T----AAAAA-GATAAATGTTGAACA.....................................	22	14	0.14	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CAATCGAAGAGGAAAAGTATT.......................................................................................................................	21	14	0.14	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................CAACAGACCATCGTCAACACGTTA................................................................................................................................................................................................	24	14	0.14	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................AACAACAGACCATCGTCAACACGTG.................................................................................................................................................................................................	25	14	0.14	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................ATCGAAGAGGAAAAGTATTTTA....................................................................................................................	22	14	0.14	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................AGTATTTTAAGGAA-----------------------AAAA---------------------T----AA........................................................	21	14	0.14	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GCT----------------GTTTGTTACTACAATTGTGCCATTAAAATTAGTAGACAA---TGAACAAAAAATTATTTGGATCAACAGATCGCCACAATCTATACGGTTTTGTCGTCCTTTAAAAATTGAATTTATTAAGGAAACTCGAGAGCT-----TATATTAGCAGAAAAAGAAAACTTGGATACCCAGATTCGTAATTTGCACATATA-------TTTGCATAAAATAAACAAC----ATTAA-AATATTTGTAAAATATGTCGGTCAAATGACACTAATAGACGGTAAAGTCTTA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCAA...........................	24	2	174.00	348	0	0	0	0	0	0	17	36	14	24	0	0	247	10	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCAAA..........................	25	2	117.00	234	0	0	0	0	0	0	27	69	5	8	0	0	119	6	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCA............................	23	2	63.50	127	0	0	0	0	0	0	2	6	2	3	0	0	112	2	0	0	0
.............................................................................................................................................................................................................................................................TTTGTAAAATATGTCGGTCAAATGA.......................	25	3	17.33	52	0	0	1	0	0	0	16	16	11	8	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCAT...........................	24	2	13.50	27	0	0	0	0	0	0	0	1	0	0	0	0	25	1	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCAAT..........................	25	2	12.00	24	0	0	0	0	0	0	0	2	1	1	0	0	20	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCAAAT.........................	26	2	10.50	21	0	0	0	0	0	0	1	4	0	0	0	0	14	2	0	0	0
...............................................TTAGTAGACAA---TGAACAAAAAATT...................................................................................................................................................................................................................................	24	1	9.00	9	0	0	0	0	0	0	3	0	6	0	0	0	0	0	0	0	0
...............................................TTAGTAGACAA---TGAACAAAAAATTA..................................................................................................................................................................................................................................	25	1	9.00	9	0	0	0	0	0	0	4	0	5	0	0	0	0	0	0	0	0
...............................................TTAGTAGACAA---TGAACAAAAAATTATT................................................................................................................................................................................................................................	27	1	9.00	9	0	0	0	0	0	0	5	0	3	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCACT..........................	25	2	8.50	17	0	0	0	0	0	0	0	0	0	0	0	0	15	2	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTC.............................	22	2	7.50	15	0	0	0	0	0	0	2	4	0	0	0	0	9	0	0	0	0
...........................................................................................................................................................................................................................................................TATTTGTAAAATATGTCGGTCAAATGA.......................	27	2	7.50	15	0	0	0	1	0	0	3	5	0	4	0	0	2	0	0	0	0
...........................................................................................................................................................................................................................................................................CGGTCAAATGACACTAATAGACGGTA........	26	4	5.75	23	0	0	0	0	0	0	11	3	5	3	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................CGGTCAAATGACACTAATAGACGGC.........	25	4	5.75	23	0	0	0	0	0	0	12	4	3	4	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCAAATGA.......................	28	2	5.00	10	0	0	0	0	0	0	3	5	1	0	0	0	1	0	0	0	0
..................................................................................................................................................................................AACTTGGATACCCAGATTCGTAATT..................................................................................................	25	1	5.00	5	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCATT..........................	25	2	5.00	10	0	0	0	0	0	0	0	1	0	0	0	0	7	2	0	0	0
......................................................................................................................................................................................TGGATACCCAGATTCGTAATTTGCACA............................................................................................	27	1	5.00	5	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................CGAGAGCT-----TATATTAGCAGAAAAAGA............................................................................................................................	26	5	4.40	22	0	0	0	0	0	0	0	10	0	9	3	0	0	0	0	0	0
......................................................................................................................................................................................TGGATACCCAGATTCGTAATTTGCACATA..........................................................................................	29	1	4.00	4	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0
....................TTTGTTACTACAATTGTGCCATT..................................................................................................................................................................................................................................................................	23	2	4.00	8	0	0	0	0	6	0	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TTGGATACCCAGATTCGTAATT..................................................................................................	22	1	4.00	4	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCATTA.........................	26	2	3.50	7	0	0	0	0	0	0	0	0	0	0	0	0	6	1	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCAC...........................	24	2	3.50	7	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0
.................................................................................................................................................................TATTAGCAGAAAAAGAAAACTTGGA...................................................................................................................	25	4	3.00	12	0	0	0	2	0	0	1	4	1	3	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................TGACACTAATAGACGGTAAAGTCTTA	26	4	3.00	12	0	0	0	0	0	0	1	4	6	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................TTGGATACCCAGATTCGTAATTTGCACA............................................................................................	28	1	3.00	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
...............................................TTAGTAGACAA---TGAACAAAAAATTAT.................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TATTTGTAAAATATGTCGGTCAAA..........................	24	2	3.00	6	0	0	0	0	0	0	2	1	0	2	0	0	0	1	0	0	0
....................................................................................................TATACGGTTTTGTCGTCCTTTAAAAA...............................................................................................................................................................................	26	6	2.83	17	0	0	0	0	0	0	7	1	6	0	3	0	0	0	0	0	0
.................................................................................TCAACAGATCGCCACAATCTATACGGTT................................................................................................................................................................................................	28	9	2.78	25	0	0	0	0	0	0	14	9	1	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................CGGTCAAATGACACTAATAGACGGT.........	25	4	2.75	11	0	0	0	0	0	0	6	1	2	1	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCAAAA.........................	26	2	2.50	5	0	0	0	0	0	0	0	2	0	0	0	0	3	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGT..............................	21	2	2.50	5	0	0	0	0	0	0	0	2	1	0	0	0	1	1	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCAAC..........................	25	2	2.50	5	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0
....................................................................................................................................................AGAGCT-----TATATTAGCAGAAAAAGA............................................................................................................................	24	6	2.17	13	0	0	0	0	0	0	6	0	5	1	0	0	1	0	0	0	0
...................................................................................................................................................................................ACTTGGATACCCAGATTCGTAATT..................................................................................................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCTTT..........................	25	2	2.00	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCAATA.........................	26	2	2.00	4	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0
......................................................................................................................................................................................TGGATACCCAGATTCGTAATT..................................................................................................	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................CGGTCAAATGACACTAATAGACGG..........	24	4	2.00	8	0	0	0	0	0	0	5	1	0	2	0	0	0	0	0	0	0
......................................................................................................................................................................................TGGATACCCAGATTCGTAATTTGCA..............................................................................................	25	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................AATATTTGTAAAATATGTCGGTCAAA..........................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCT............................	23	2	2.00	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0
....................................................................................................................................................................................CTTGGATACCCAGATTCGTAATT..................................................................................................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.............................................................................................CACAATCTATACGGTTTTGTCGTCC.......................................................................................................................................................................................	25	10	1.80	18	0	0	1	9	0	0	0	1	0	1	5	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................TTTGTAAAATATGTCGGTCAAATG........................	24	3	1.67	5	0	0	0	0	0	0	2	2	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCAAATG........................	27	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCAATCT........................	27	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCTT...........................	24	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
..........................................................................................................................................................................................................................................................................TCGGTCAAATGACACTAATAGACGGTA........	27	4	1.50	6	0	0	0	0	0	0	0	1	0	0	0	0	5	0	0	0	0
...................................................................................................................................................................TTAGCAGAAAAAGAAAACTTGGATACC...............................................................................................................	27	2	1.50	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
.............................................................................................CACAATCTATACGGTTTTGTCGTCCT......................................................................................................................................................................................	26	10	1.50	15	0	0	6	0	0	0	0	1	0	0	7	0	1	0	0	0	0
............................................................................................................................................................................................................................................................ATTTGTAAAATATGTCGGTCAAATGA.......................	26	3	1.33	4	0	0	0	0	0	0	0	2	0	1	0	0	1	0	0	0	0
.................................................................................TCAACAGATCGCCACAATCTATACGGT.................................................................................................................................................................................................	27	9	1.22	11	0	0	4	0	5	0	0	0	0	0	1	0	0	1	0	0	0
....................................................................................................................................................................................................................A-------TTTGCATAAAATAAACAAC----ATTAA-....................................................	25	7	1.14	8	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CACAATCTATACGGTTTTGTCGTC........................................................................................................................................................................................	24	10	1.10	11	0	1	3	1	0	0	0	3	0	0	0	0	3	0	0	0	0
......................................................................................................................................................................................................................................................................TATGTCGGTCAAATGACACTAATAGA.............	26	3	1.00	3	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0
.................................................AGTAGACAA---TGAACAAAAAATTATTT...............................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................TAGTAGACAA---TGAACAAAAAATTATAAA..............................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................TTGTCGTCCTTTAAAAATTGAATTTAT.....................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................TGTGCCATTAAAATTAGTAGACAA---TGAAC...........................................................................................................................................................................................................................................	29	2	1.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TGGATACCCAGATTCGTAATTTGCAC.............................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................TACGGTTTTGTCGTCCTTTAAAAA...............................................................................................................................................................................	24	6	1.00	6	0	0	0	0	0	0	4	1	1	0	0	0	0	0	0	0	0
.......................................................CAA---TGAACAAAAAATTAT.................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TTAA-AATATTTGTAAAATATGTCGGT..............................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................TTTGTCGTCCTTTAAAAATTGAATT........................................................................................................................................................................	25	2	1.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................TTGTAAAATATGTCGGTCAAATGA.......................	24	3	1.00	3	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0
..................................................................................................................................................CGAGAGCT-----TATATTAGCAGAAAAA..............................................................................................................................	24	7	1.00	7	0	0	0	0	0	0	0	3	0	4	0	0	0	0	0	0	0
.........................................................................................................................................................................................ATACCCAGATTCGTAATT..................................................................................................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................TAGTAGACAA---TGAACAAAAAATTAT.................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCAAACT........................	27	2	1.00	2	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0
.................................................................................TCAACAGATCGCCACAATCTATACGG..................................................................................................................................................................................................	26	9	1.00	9	0	0	0	0	0	0	5	0	0	1	0	0	3	0	0	0	0
..............................................ATTAGTAGACAA---TGAACAAAAAATT...................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TTGGATACCCAGATTCGTAATTTGCA..............................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................TAAAAATTGAATTTATTAAGGAAACT...........................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................TAGTAGACAA---TGAACAAAAAATTA..................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TTGGATACCCAGATTCGTAATTTGCACATA..........................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................TTAGTAGACAA---TGAACAAAAAATTATA................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................TAAGGAAACTCGAGAGCT-----TATATTAGCAGA..................................................................................................................................	30	6	0.83	5	0	0	0	0	0	0	1	2	0	0	0	0	0	2	0	0	0
..................................................................................................................................................CGAGAGCT-----TATATTAGCAGAAAAAGAA...........................................................................................................................	27	5	0.80	4	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0
..................................................................................................................................................CGAGAGCT-----TATATTAGCAGAAAAAG.............................................................................................................................	25	5	0.80	4	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TGACACTAATAGACGGTAAAGTCT..	24	4	0.75	3	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TCGGTCAAATGACACTAATAGACGGT.........	26	4	0.75	3	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................CGGTCAAATGACACTAATAGACGGTAA.......	27	4	0.75	3	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0
..................................................................................................................................................CGAGAGCT-----TATATTAGCAGAAAA...............................................................................................................................	23	7	0.71	5	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................CGAGAGCT-----TATATTAGCAGAA.................................................................................................................................	21	7	0.71	5	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CACAATCTATACGGTTTTG.............................................................................................................................................................................................	19	10	0.70	7	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................AAAATATGTCGGTCAAATGA.......................	20	3	0.67	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TCGAGAGCT-----TATATTAGCAGAAAAAGA............................................................................................................................	27	5	0.60	3	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0
............................................................................................CCACAATCTATACGGTTTTGTC...........................................................................................................................................................................................	22	9	0.56	5	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................TAAGGAAACTCGAGAGCT-----TATATT........................................................................................................................................	24	11	0.55	6	0	0	0	0	0	0	1	2	3	0	0	0	0	0	0	0	0
....................................................................................................TATACGGTTTTGTCGTCCTTTAAAAATT.............................................................................................................................................................................	28	4	0.50	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCTGT..........................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................TTAGCAGAAAAAGAAAACTTGGATACCCA.............................................................................................................	29	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................TAAGGAAACTCGAGAGCT-----TATATTAGC.....................................................................................................................................	27	6	0.50	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0
............................................................................TTGGATCAACAGATCGCCACAATCT........................................................................................................................................................................................................	25	10	0.50	5	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCG................................	19	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TATTTGTAAAATATGTCGGTCAAATGG.......................	27	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCATC..........................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................ATATTAGCAGAAAAAGAAAACTTGGAA..................................................................................................................	27	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCAACA.........................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................TGTGCCATTAAAATTAGTAGACAA---TGAA............................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCAATAC........................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................AGAGCT-----TATATTAGCAGAAAAAGAA...........................................................................................................................	25	6	0.50	3	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0
....................................TGCCATTAAAATTAGTAGACAA---TGAACA..........................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TATTTGTAAAATATGTCGGTC.............................	21	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................TATACGGTTTTGTCGTCCTTTAAA.................................................................................................................................................................................	24	6	0.50	3	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCC............................	23	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................TATTTGTAAAATATGTCGGTCAA...........................	23	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TCGGTCAAATGACACTAATAGACGGC.........	26	4	0.50	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
............................................................................................................TTTGTCGTCCTTTAAAAATTGAATTT.......................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TCGGTCAAATGACACTAATAGACGG..........	25	4	0.50	2	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................AAGGAAACTCGAGAGCT-----TATATTAGCAGA..................................................................................................................................	29	6	0.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCAAATA........................	27	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................AATTAGTAGACAA---TGAACAAAAAAT....................................................................................................................................................................................................................................	25	4	0.50	2	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................TTTGTTACTACAATTGTGCCATTT.................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCAAAC.........................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCAATAA........................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCAACAC........................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTAT............................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................CACAATCTATACGGTTTTGTCGTCCTT.....................................................................................................................................................................................	27	10	0.40	4	0	0	0	1	0	0	0	0	0	0	1	0	2	0	0	0	0
.............................................................................................CACAATCTATACGGTTTTGTCGA.........................................................................................................................................................................................	23	10	0.40	4	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0
............................................................................TTGGATCAACAGATCGCCACAAT..........................................................................................................................................................................................................	23	11	0.36	4	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0
...............................................................................................................................TGAATTTATTAAGGAAACTCGAGAGCT-----..............................................................................................................................................	27	6	0.33	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGTCTTG..........................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................TATGTCGGTCAAATGACA.....................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................TCGCCACAATCTATACGGTTTTGTCG..........................................................................................................................................................................................	26	9	0.33	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...............................................................................................................................TGAATTTATTAAGGAAACTCGAGAGC....................................................................................................................................................	26	6	0.33	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................TTTGTAAAATATGTCGGTCAAATGAC......................	26	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................TATACGGTTTTGTCGTCCTTTAAAA................................................................................................................................................................................	25	6	0.33	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................AAATATGTCGGTCAA...........................	15	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................TCAACAGATCGCCACAATCTATACGGTTT...............................................................................................................................................................................................	29	9	0.33	3	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TGTAAAATATGTCGGTCAAATGAC......................	24	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................AGGAAACTCGAGAGCT-----TATATTAGCAGA..................................................................................................................................	28	6	0.33	2	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................TGTAAAATATGTCGGTCAAATGACACTAATA...............	31	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................AAATATGTCGGTCAAATGA.......................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................TGTAAAATATGTCGGTCAAATGA.......................	23	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................ATATTTGTAAAATATGTCGGAA.............................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................TAAAATATGTCGGTCAAATGA.......................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................AACTCGAGAGCT-----TATATTAGCAGAAAA...............................................................................................................................	27	7	0.29	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0
...........................................................................................................................................................................................................................................................................CGGTCAAATGACACTAATAGACGGTT........	26	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................TGTCGGTCAAATGACACTAATAGACGGC.........	28	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................TACGGTTTTGTCGTCCTTTAAAAATT.............................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................ATTAGTAGACAA---TGAACAAAAAA.....................................................................................................................................................................................................................................	23	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................GTCGGTCAAATGACACTAATAGAC............	24	4	0.25	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................TCAAATGACACTAATAGACGGTA........	23	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................TATATTAGCAGAAAAAGAAAACTTGG....................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................TGTCGGTCAAATGACACTAATAGACGG..........	27	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................ACTAATAGACGGTAAAGT....	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................CGGTCAAATGACACTAATAGACGGTAAA......	28	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................TGTCGGTCAAATGACACTAATAGA.............	24	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................TTTGTTACTACAATT..........................................................................................................................................................................................................................................................................	15	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TCGGTCAAATGACACTAATAGACGGA.........	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................CGGTCAAATGACACTAATAGACGGTAAAG.....	29	4	0.25	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSec2

CATT---------------------------------------------------------------------------------------------------------------------GAAACTGATTGAGAAAAAGGAAACT--AAAATTGATTCGATAAATTCC------GATATAGTAAAAAGA-----------------------CAAATACTGGACATTCAACCAACAATTACACCCTT-ATTTACAATTTTCCACGAATTTCAAATGACCATGCTAGATGGCAAAACATTT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

TATT---------------TTTC-CAACGTCGTACGTCCCACTTCAGCTTATAGTTGAAAGTAGCTCCAAAATAATATGGAAACATCCGAGACCACCTTCTACTCGCTATTGTAGGCCAGTCAGAATTCAATTTA-------------------------ATTCAAAAAGAAAATAGAG--------------------AATCTAATGCCAA-------CTGAATTTCAAGTTCCCAAT----AAAGA-GTTATTCATCAACCATACCCTGCAACTTACTATGGTAGATGGTAACGT--AC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........................................................................................................................................................................................................................CTGAATTTCAAGTTCCCAAT----AAAGA-GT..................................................	27	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CAACTTACTATGGTAGATGGTAACGT--..	26	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
...........................................................................TATGGAAACATCCGAGACCACCT...........................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................TTCAAAAAGAAAATAGAG--------------------AATCTAATGCC...........................................................................................	29	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.....................TC-CAACGTCGTACGTCCCACTTCAGC.............................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................GACCACCTTCTACTCGCTATTGTAGGCC.......................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................TCAGAATTCAATTTA-------------------------ATTCAAAAAGAAA................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................T----AAAGA-GTTATTCATCAACCATACCCC...............................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................CCACCTTCTACTCGCTATTGTAGGCC.......................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................TATGGAAACATCCGAGACCACCTTCC........................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................TATGGAAACATCCGAGACCACCTTCT........................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................AGA-GTTATTCATCAACCATACC.................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CAACTTACTATGGTAGATGGTAAC......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..TT---------------TTTC-CAACGTCGTACGTCCCACT..................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................TAGGCCAGTCAGAATTCAATTTA-------------------------AT...........................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................TCAAAAAGAAAATAGAG--------------------AATCTAATGCC...........................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................CGCTATTGTAGGCCAGTCAGAAT..............................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................TCCGAGACCACCTTCTACTCGCTATTG.............................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................CGCTATTGTAGGCCAGTCAGAATTC............................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TTCAAAAAGAAAATAGAG--------------------AATCTAATGC............................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................TACGTCCCACTTCAGCTTATAGTTGA...................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................GCTATTGTAGGCCAGTCAGAATTCA...........................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................T----AAAGA-GTTATTCATCAACCATA...................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................TAATATGGAAACATCCGAGACCACCTTC.........................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................TAGTTGAAAGTAGCTCCAAAATAATATG..............................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................AGAG--------------------AATCTAATGCCAA-------CTGAATT...........................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................AAAAGAAAATAGAG--------------------AATCTAATGCC...........................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CAACTTACTATGGTAGATGGTAA.......	23	5	0.60	3	0	3	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TGCCAA-------CTGAATTTCAAGTTCCCAAT----..........................................................	26	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................ATCTAATGCCAA-------CTGAATTTCAAGT.....................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TGCCAA-------CTGAATTTCAAGTTCCC.................................................................	23	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CAACTTACTATGGTAGATGGTA........	22	5	0.20	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................TACCCTGCAACTTACTATGGTAGATGG..........	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................CTGCAACTTACTATGGTAGATG...........	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

CCCT---------------TTTTGCAGTTGGCCTTGTACCATTACAAGTTCAGCTTGA------ATCAAAGACTTTGTGGAAAAATCCGCGACCTTCATCAACACGCTGTTGTAGGCCTTTGAAACTGATTTGCGAAAAGGAAGCTATAGAATT-----TATTCGATCAGAGTCGGATATAGTAAAAAGA-----------------------CAAATACTGCCCATTCAACCAACAATTACACCCTT-AATTACAATTTCCCACGAATTT------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................................................................TTCATCAACACGCTGTTGTAGGCCTT.....................................................................................................................................................................................	26	1	4.00	4	4	0	0	0	0	0	0
.........................................................................TTTGTGGAAAAATCCGCGACCTTCA...........................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	4
...................................................................................................................................................TAGAATT-----TATTCGATCAGAGTCGGATA..........................................................................................................................	27	1	2.00	2	2	0	0	0	0	0	0
............................................................................................................................................................................................................................TGCCCATTCAACCAACAATTACACCCT......................................................	27	1	2.00	2	2	0	0	0	0	0	0
...............................................................................................TCATCAACACGCTGTTGTAGGCCTT.....................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0	0
...........................................................................TGTGGAAAAATCCGCGACCTTCATC.........................................................................................................................................................................................................	25	1	2.00	2	2	0	0	0	0	0	0
..........................................TACAAGTTCAGCTTGA------ATCAAAGACT...................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0	0
.........................................................................TTTGTGGAAAAATCCGCGACCTTCATC.........................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0	0
....................................TACCATTACAAGTTCAGCTTGA------ATC..........................................................................................................................................................................................................................................	25	1	2.00	2	1	0	0	0	0	0	1
..........................................TACAAGTTCAGCTTGA------ATCAAAGACTT..................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................TCCGCGACCTTCATCAACACGCTGT...............................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.................................................................................AAAATCCGCGACCTTCATCAACACGC..................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................AGAATT-----TATTCGATCAGAGTCGGA............................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................TCAGAGTCGGATATAGTAAAAAGA-----------------------CAAA....................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................ACCTTCATCAACACGCTGTTGTAGGCCT......................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................TTCATCAACACGCTGTTGTAGGCC.......................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................TCAACACGCTGTTGTAGGCCTT.....................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.................................TTGTACCATTACAAGTTCAGCTTGA------AT...........................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................TCCGCGACCTTCATCAACACGCTGTT..............................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................TCCGCGACCTTCATCAACACGCTGTTG.............................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................TATAGAATT-----TATTCGATCAGAGTCGGA............................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................................TGCGAAAAGGAAGCTATAGAATT-----TA............................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................AACACGCTGTTGTAGGCCTTTGAAAC...............................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................TTCAACCAACAATTACACCCTT-AAT.................................................	25	1	1.00	1	1	0	0	0	0	0	0
................................................................ATCAAAGACTTTGTGGAAAAATCCGCG..................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...................TTTTGCAGTTGGCCTTGTACCATTAC................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................CACGCTGTTGTAGGCCTTTGAAACTGA............................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................TTTGCGAAAAGGAAGCTATAGAATT-----..............................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................TTTGAAACTGATTTGCGAAAAGGAAGC............................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...................................................AGCTTGA------ATCAAAGACTTTGTGGAAAAA........................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................TAGAATT-----TATTCGATCAGAGTCGGA............................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................TGCGAAAAGGAAGCTATAGAATT-----TATTC.........................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................TAGTAAAAAGA-----------------------CAAATACTGCCCATT.........................................................................	26	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................ACCTTCATCAACACGCTGTTGTAGGCCTT.....................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................TAGGCCTTTGAAACTGATTTGCGAA....................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................TACTGCCCATTCAACCAACAATTACACCC.......................................................	29	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................TCATCAACACGCTGTTGTAGGCCTTTGA..................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.........................................TTACAAGTTCAGCTTGA------ATCAAAGACT...................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................TGTTGTAGGCCTTTGAAACTGATT..........................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
....................................................................................ATCCGCGACCTTCATCAACACGCTGT...............................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0

dwi_2408

scf2_1100000004899:21221-21371 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads