ID:

dwi_2367

 Coordinate:

scf2_1100000004887:310817-310967 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.3 -7.1

Flybase annnotation

exon [dwil_GLEANR_16445:1]; CDS [Dwil\GK16078-cds]; intron [Dwil\GK16078-in]; Antisense to intron [Dwil\GK16085-in]

Repeatable elements

NameClassFamilyStrand
Gypsy-12_DWil-LTRLTRGypsy+
Gypsy-12_DWil-I-intLTRGypsy+
mature
  1. dwi_2367  scf2_1100000004887:310868-310894 -
  2. scf2_1100000012659:608-634 -
star
  1. scf2_1100000002019:1378-1403 +
  2. scf2_1100000002067:1012-1037 -
  3. scf2_1100000011622:790-815 -
  4. scf2_1100000014666:669-694 -
  5. dwi_2367  scf2_1100000004887:310834-310859 -
  6. scf2_1100000004887:316836-316861 -
  7. scf2_1100000012659:574-599 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGGTGCACCAGCAGCGGTGGGCGTGGAGGCGGCCTTTCTCGATGTGGAACGTGTGGCCTGCCGTGTCCCGAAATATTTATCTTTTCGGGTGGTCATCCCACTTCTGAGTTGTAAATAGCTATATATTGAACAATAAAGATAAGGATTTATTAGTATTTTTCTGATTTAATTCTGGTTGTCTGCGCAAAAACAACTTGTTCGTTTCGTTGCCGGAAGAGAAGAGAGACGCCGTCTCTCAACCTATCGAGGAC
***************************************************************************************************************************.............(((((((((((.(((((.......)))))..))))))...)))))...******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
 V117
male body
....................................................................................................................................................................................TGCGCAAAAACAACTTGTTCGTTTCGT............................................ 27 0 1 2.00 2 2 0 0 0
................................................................................................................................................................................TGTCTGCGCAAAAACAACTTGTTCGTT................................................ 27 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................TGTCTTCGCAAAAACAACTTGTTCGTT................................................ 27 1 1 1.00 1 0 1 0 0
........................................................................................................................................................................................CAAAAACAACTTGTTCGTTTCGTTGCCG....................................... 28 0 1 1.00 1 0 0 1 0
.....................................................................................................................................................................................GCGCAAAAACACCTTGTTCGTTTCGT............................................ 26 1 1 1.00 1 1 0 0 0
...............................................................................................................................................................................................................TGCCGGAAGAGAAGAGAGACGCCG.................... 24 0 10 0.50 5 4 0 0 1
...........................................................................................................................TATTGAACAATAAAGATAAGGATTTAT..................................................................................................... 27 0 2 0.50 1 1 0 0 0
......................................................................................................................................................TAGTATTTTTCTGATTTAATTCTGGT........................................................................... 26 0 7 0.43 3 1 2 0 0
.......................................................................................................................TATATATTGAACAATAAAGATAAGGAT......................................................................................................... 27 0 11 0.36 4 4 0 0 0
...................................................................................................................................................................................................................GGAAGAGAAGAGAGACGCCGTCTCT............... 25 0 20 0.30 6 6 0 0 0
.............................................................................................................................................................................................ACAACTTGTTCGTTTCGTTGCCGGA..................................... 25 0 7 0.29 2 2 0 0 0
...............................................................................................................................................................................................AACTTGTTCGTTTCGTTGCCGGAAGA.................................. 26 0 7 0.29 2 2 0 0 0
......................................................................................................................................................TAGTATTTTTCTGATTTAATTCTGG............................................................................ 25 0 8 0.25 2 2 0 0 0
..........................................................................................................................................................................................................TTCGTTGCCGGAAGAGAAGAGAGA......................... 24 0 8 0.25 2 1 1 0 0
...............................................................................................................................................................................................................TGCCGGAAGAGAAGAGAGACGCCGT................... 25 0 10 0.20 2 2 0 0 0
.........................................................................................................................TATATTGAACAATAAAGATAAGGAT......................................................................................................... 25 0 11 0.18 2 0 2 0 0
.........................................................................................................................TATATTGAACAATAAAGATAAGGATT........................................................................................................ 26 0 11 0.18 2 1 1 0 0
...............................................................................................................................................................................................AACTTGTTCGTTTCGTTGCCGGAAG................................... 25 0 7 0.14 1 1 0 0 0
..............................................................................................................................................................TTCTGATTTAATTCTGGTTGTCTGCG................................................................... 26 0 7 0.14 1 0 1 0 0
.................................................................................................................................................................TGATTTAATTCTGGTTGTCTGCGC.................................................................. 24 0 7 0.14 1 0 0 0 1
.....................................................................................................................................................................................................TTCGTTTCGTTGCCGGAAGAGA................................ 22 0 8 0.13 1 1 0 0 0
............................................................................................................................................................................................................CGTTGCCGGAAGAGAAGAGAGACGCCG.................... 27 0 8 0.13 1 1 0 0 0
...........................................................................................................................................................................................................TCGTTGCCGGAAGAGAAGAGAGACGCCG.................... 28 0 8 0.13 1 1 0 0 0
...................................................................................................................................................................................................TGTTCGTTTCGTTGCCGGAAGAGAA............................... 25 0 8 0.13 1 0 1 0 0
...................................................................................................................................................................................................TGTTCGTTTCGTTGCCGGAAGA.................................. 22 0 8 0.13 1 0 1 0 0
.............................................................................................................................................................................................................GTTGCCGGAAGAGAAGAGAGACA....................... 23 1 9 0.11 1 1 0 0 0
...............................................................................................................................................................................................................TGCCGGAAGAGAAGAGAGA......................... 19 0 10 0.10 1 0 1 0 0
...................................................................................................................TAGCTATATATTGAACAATAAAGATAA............................................................................................................. 27 0 11 0.09 1 1 0 0 0
........................................................................................................................ATATATTGAACAATAAAGATAAGGAT......................................................................................................... 26 0 11 0.09 1 1 0 0 0
.......................................................................................................................TATATATTGAACAATAAAGATAAGGATT........................................................................................................ 28 0 11 0.09 1 1 0 0 0
....................................................................................................................................................................TTTAATTCTGGTTGTCTGCGC.................................................................. 21 0 18 0.06 1 0 0 1 0
........CAGCAGCGGTGGGCGTGGAGGCG............................................................................................................................................................................................................................ 23 0 20 0.05 1 1 0 0 0
....................................................................................................................................................................................TGCGCAAAGACAACTTGTTCGTTTCG............................................. 26 1 20 0.05 1 0 1 0 0
.GGTGCACCAGCAGCGATG........................................................................................................................................................................................................................................ 18 1 20 0.05 1 1 0 0 0
.....................................CTCGATGTGGAGCGTGTGGCC................................................................................................................................................................................................. 21 1 20 0.05 1 1 0 0 0
............................................TGGAACGTGTGGCCTGCCGTGT......................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0
................................................................................................CCCACTTCTGAGTTGTAAATAGCTATAT............................................................................................................................... 28 0 20 0.05 1 1 0 0 0
..............................................................................................ATCCCACTTCTGAGTTGTAAAT....................................................................................................................................... 22 0 20 0.05 1 0 0 0 1
.....................................CTCGATGTGGAACGTGTG.................................................................................................................................................................................................... 18 0 20 0.05 1 0 1 0 0
.................AGGGCGTGTAGGCGGTCT........................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 1 0
...............................................AACGTGTGGCCTGCCTTGTCC....................................................................................................................................................................................... 21 1 20 0.05 1 0 1 0 0
..........................................TGTGGAACGTGTGGCCTGCCGTGT......................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0
...............................................AACGTGTGGCCTGCCGTGTCC....................................................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0

Anti-sense strand reads

CCCACGTGGTCGTCGCCACCCGCACCTCCGCCGGAAAGAGCTACACCTTGCACACCGGACGGCACAGGGCTTTATAAATAGAAAAGCCCACCAGTAGGGTGAAGACTCAACATTTATCGATATATAACTTGTTATTTCTATTCCTAAATAATCATAAAAAGACTAAATTAAGACCAACAGACGCGTTTTTGTTGAACAAGCAAAGCAACGGCCTTCTCTTCTCTCTGCGGCAGAGAGTTGGATAGCTCCTG
*******************************************************************.............(((((((((((.(((((.......)))))..))))))...)))))...*************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body		 M020
head
 V119
head
...............................................................................................AGGGTGAAGACTCAACATTTATCG.................................................................................................................................... 24 0 20 0.35 7 5 2 0 0 0
.............................................................................................................................................................................................................................TCTCTGCGGCAGAGAGTTGGATAGCT.... 26 0 20 0.25 5 0 5 0 0 0
....................................................................................................................................................................................................CAACCATAGCAACGGCCTT.................................... 19 2 9 0.11 1 1 0 0 0 0
........................................................GGACGGCACAGGGCTTTATAA.............................................................................................................................................................................. 21 0 20 0.10 2 0 1 1 0 0
................................................................................................................................................................................................................CGGCCTTCTCTTCTCTCTGCGGCAG.................. 25 0 20 0.10 2 2 0 0 0 0
....................................................................................................................................................................................................GAAGCTAAGCAACGGCCT..................................... 18 2 19 0.05 1 1 0 0 0 0
..........................................................................................CCAGTAGGGTGAAGACTCAACATTTAT...................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
................................................TGCACACCGGACGGCACAGG....................................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0
..................................................................................AAAGCCCACCAGTAGGGTGAAGACTCAA............................................................................................................................................. 28 0 20 0.05 1 0 0 0 1 0
........................................................................TATAAATAGAAAAGCCCACCAGTAGGGT....................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0
..................................................CACACCGGACGGCACAGGG...................................................................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0
............................................................................................................................................................................................................................CTCTCTGCGGCAGAGAGTTGGATAG...... 25 0 20 0.05 1 0 1 0 0 0
................................................................................................GGGTGAAGACTCAACATTTATCGATA................................................................................................................................. 26 0 20 0.05 1 0 1 0 0 0
................................................TGCACACCGGACGGCACAGGGCTT................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
.............................................................................................GTAGGGTGAAGACTCAACATTTATCG.................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
.......................................................CGGACGGCACAGGGCTTTATAAAT............................................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0
......................................................CCGGACGGCACAGGGCTTTA................................................................................................................................................................................. 20 0 20 0.05 1 1 0 0 0 0
...................................................................................................TGAAGACTCAACATTTATCG.................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0
.......................................................CGGACGGCACAGGGCTTTA................................................................................................................................................................................. 19 0 20 0.05 1 0 1 0 0 0
.................................................................................................GGTGAAGACTCAACATTTATC..................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
................................................................................................GGGTGAAGACTCAACATTTATC..................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................................................................................CGGCAGAGAGTTGGATAGC..... 19 0 20 0.05 1 0 0 1 0 0
.......................................................................................CCACCAGTAGGGTGAAGACTCA.............................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0
.................................................................................AAAAGCCCACCAGTAGGGTGAAGACTCA.............................................................................................................................................. 28 0 20 0.05 1 0 0 0 1 0
...........................................................................................................................................................................................................................TCTCTCTGCGGCAGAGAGTTGGATAG...... 26 0 20 0.05 1 0 0 0 0 1
.........................................................................................ACCAGTAGGGTGAAGACTCAACATT......................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
.......................................................CGGACGGCACAGGGCTTTATA............................................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0
.................................................................................................GGTGAAGACTCAACATTTATCGA................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
...........................................................CGGCACAGGGCTTTATAAATAGAAA....................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
...............................................................................................AGGGTGAATACTCAACATTTATCG.................................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0
......................................................CCGGACGGCACAGGGCTTTATAAATA........................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
......TGGTCGCCGCCACCCGCACCTC............................................................................................................................................................................................................................... 22 1 20 0.05 1 0 1 0 0 0
.......................................................CGGACGGCACAGGGCTTTATAAATAG.......................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0
.............................................................................................GTAGGGAGAAGACTCAAC............................................................................................................................................ 18 1 20 0.05 1 0 0 0 0 1
........................................................GGACGGCACATGGCTTTATA............................................................................................................................................................................... 20 1 20 0.05 1 0 0 1 0 0
.............................................................................................GTAGGGTGAAGACTCAAC............................................................................................................................................ 18 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................................................................................................TTGCGGCAGAGAGTTGGATAGC..... 22 1 20 0.05 1 1 0 0 0 0
.................................................................................................GGTGAAGACTCAACATTTATCG.................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
....................................................................GCTTTATAAATAGAAAAG..................................................................................................................................................................... 18 0 20 0.05 1 0 1 0 0 0
....................................AGAGCTACACCTTGCACAC.................................................................................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0
............................................................................AATAGAAAAGCCCACCAGTAG.......................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
......TGGTCGTCGCCACCCGCACCTC............................................................................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0
....................................................................................AGCCCACCAGTAGGGTGAAGACTCAAC............................................................................................................................................ 27 0 20 0.05 1 0 0 0 1 0
..................................................................................................GTGAAGACTCAACATTTATCGATA................................................................................................................................. 24 0 20 0.05 1 0 1 0 0 0
...............................................................................................AGGGTGAAGACTCAACATTTA....................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0
.................................................GCACACCGGACGGCACAGGGCTTT.................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................................................................................................CTGCGGCAGAGAGTTGGATAGCT.... 23 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................................................................................TCTCTGCGGCAGAGAGTTGGATAG...... 24 0 20 0.05 1 0 0 1 0 0
........................................................GGACGGCACAGGGCTTTATAAATAGAAA....................................................................................................................................................................... 28 0 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004887:310767-311017 - dwi_2367 GGGTGCACCAGCAGC-GGTGG----GC-------------------GT--------GGAGGCGGCCTTTCTCGATGT-GGA-AC----------------GTGTGGCCTGCCGTGTCCCGAAATATTTATCTTTTCGGGTGGTCATCCCACTTCTGAGTTGTAAATAGCTATATATTGAACAATAAAGATAAGGATTTATTAGTATTTTTCTGATTTAATTCTGGTTGTCTGCGCAAAAACAACTTGTTCGTTTCGTTGCCGGAAGAGAAGAGAGACGCCGTCTCTCAACCTATCGAGGAC
droVir3 scaffold_12928:512500-512573 + AGCTGCACCACCAGC-TTTGC----GTC------------------GC--------AGCAGAAGC--CGCTCATTGT-GGAGAC----------------GCCTGCCACACCGCAGCCAGGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_5992:1425-1466 - AGGTGCAGCAGCAGA-GGCAG----CA-------------------AG--------TGCAGCAACTCCTCCCG--------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15203:7656998-7657039 + AGCAGTAGCAGCAGC-AGTTG----AC-------------------GT--------TGTGGCCGCCTTGCTCG--------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 Unknown_singleton_535:90-173 - GGCAGCAGCAACCAC-AATGG----AG-------------------GG--------GACCGGAGG--CGGCCGTAATAGGG-CCATACGTGTCACAGGAGGTGCGGACCGCCGTGCGC-----C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_358:7760-7809 - GGTGGCAGCGGCAGC-GGCAG----AG-------------------GT--------GGATGGAGCC-TGCTCAAAGG-GGA-GC---------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13117:608482-608536 - GGGACGA-----------TGCGCGAGTTGCAGCAGAAGCAGATGCAGC--------------AG---TTCC------------------------AGCAGATGCGG-----------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395895:27647-27686 + GGTGGTGGTGGCAGT-GGCGG----CG-------------------GT--------GGTGGTGGTGTTCCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302401:550620-550653 - AGATGTCACCGCGACCGGTGG----GC-------------------GT--------GTCGCCGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000452690:1352-1396 + TGTTGCTCCAGCTGC-CGTTG----AT-------------------GC--------GGCTGCGCC--TGCTGCTGATG---------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491080:2492327-2492361 - AACAGCAGCAGCAGC-AACAG----GC-------------------GT------CGAACGGCGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000780080:522156-522186 + TGATGAACCAGCAAC-AGCAG----CA-------------------G---------GGCGGCGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301760:313138-313170 - AGGTGCACCAGCAGC-AGCAG----CA-------------------GT--------CGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415763:230196-230226 - G----CAGCAGCAAC-AGCAG----GC-------------------GT------CGAATGGCGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000408162:5973-6005 + GGCAGCGACAGCAGC-GGCGG----CA-------------------AC--------GACGACGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chrX:4972413-4972432 - AGCAGCAGCAGCAGC-AGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2r:12617771-12617813 + AACGCCAGCAGCGGA-CGATG----CA-------------------GCAGGTGAGCTTTGGCGAC------------A---------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_1:9445584-9445600 + AGGAACACCAGCAAC-GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chrUn_927:570-602 + AGGGGCAGCAGCAGT-GGCAG----CA-------------------GT--------AGTGGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4690:14244111-14244130 + GGAGGCGGCGGTGGC-AGCGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
GGGTGCACCAGCAGC-GGTGG----GC-------------------GT--------GGAGGCGGCCTTTCTCGATGT-GGA-AC----------------GTGTGGCCTGCCGTGTCCCGAAATATTTATCTTTTCGGGTGGTCATCCCACTTCTGAGTTGTAAATAGCTATATATTGAACAATAAAGATAAGGATTTATTAGTATTTTTCTGATTTAATTCTGGTTGTCTGCGCAAAAACAACTTGTTCGTTTCGTTGCCGGAAGAGAAGAGAGACGCCGTCTCTCAACCTATCGAGGACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................TGCGCAAAAACAACTTGTTCGTTTCGT............................................2712.00202000
..................................................................................................................................................................................................................................TGTCTGCGCAAAAACAACTTGTTCGTT................................................2711.00101000
..........................................................................................................................................................................................................................................CAAAAACAACTTGTTCGTTTCGTTGCCG.......................................2811.00110000
.................................................................................................................................................................................................................................................................TGCCGGAAGAGAAGAGAGACGCCG....................24100.50504100
.............................................................................................................................................................................TATTGAACAATAAAGATAAGGATTTAT.....................................................................................................2720.50101000
........................................................................................................................................................................................................TAGTATTTTTCTGATTTAATTCTGGT...........................................................................2670.43301020
.........................................................................................................................................................................TATATATTGAACAATAAAGATAAGGAT.........................................................................................................27110.36404000
.....................................................................................................................................................................................................................................................................GGAAGAGAAGAGAGACGCCGTCTCT...............25200.30606000
...............................................................................................................................................................................................................................................ACAACTTGTTCGTTTCGTTGCCGGA.....................................2570.29202000
.................................................................................................................................................................................................................................................AACTTGTTCGTTTCGTTGCCGGAAGA..................................2670.29202000
........................................................................................................................................................................................................TAGTATTTTTCTGATTTAATTCTGG............................................................................2580.25202000
............................................................................................................................................................................................................................................................TTCGTTGCCGGAAGAGAAGAGAGA.........................2480.25201010
.................................................................................................................................................................................................................................................................TGCCGGAAGAGAAGAGAGACGCCGT...................25100.20202000
...........................................................................................................................................................................TATATTGAACAATAAAGATAAGGAT.........................................................................................................25110.18200020
...........................................................................................................................................................................TATATTGAACAATAAAGATAAGGATT........................................................................................................26110.18201010
.................................................................................................................................................................................................................................................AACTTGTTCGTTTCGTTGCCGGAAG...................................2570.14101000
................................................................................................................................................................................................................TTCTGATTTAATTCTGGTTGTCTGCG...................................................................2670.14100010
...................................................................................................................................................................................................................TGATTTAATTCTGGTTGTCTGCGC..................................................................2470.14100100
.......................................................................................................................................................................................................................................................TTCGTTTCGTTGCCGGAAGAGA................................2280.13101000
..............................................................................................................................................................................................................................................................CGTTGCCGGAAGAGAAGAGAGACGCCG....................2780.13101000
.............................................................................................................................................................................................................................................................TCGTTGCCGGAAGAGAAGAGAGACGCCG....................2880.13101000
.....................................................................................................................................................................................................................................................TGTTCGTTTCGTTGCCGGAAGAGAA...............................2580.13100010
.....................................................................................................................................................................................................................................................TGTTCGTTTCGTTGCCGGAAGA..................................2280.13100010
...............................................................................................................................................................................................................................................................GTTGCCGGAAGAGAAGAGAGACA.......................2390.11101000
.................................................................................................................................................................................................................................................................TGCCGGAAGAGAAGAGAGA.........................19100.10100010
.....................................................................................................................................................................TAGCTATATATTGAACAATAAAGATAA.............................................................................................................27110.09101000
..........................................................................................................................................................................ATATATTGAACAATAAAGATAAGGAT.........................................................................................................26110.09101000
.........................................................................................................................................................................TATATATTGAACAATAAAGATAAGGATT........................................................................................................28110.09101000
......................................................................................................................................................................................................................TTTAATTCTGGTTGTCTGCGC..................................................................21180.06110000
........CAGCAGC-GGTGG----GC-------------------GT--------GGAGGCG..............................................................................................................................................................................................................................................23200.05101000
............................................................................T-GGA-AC----------------GTGTGGCCTGCCGTGT.........................................................................................................................................................................................22200.05101000
..................................................................................................................................................CCCACTTCTGAGTTGTAAATAGCTATAT...............................................................................................................................28200.05101000
................................................................................................................................................ATCCCACTTCTGAGTTGTAAAT.......................................................................................................................................22200.05100100
.....................................................................CTCGATGT-GGA-AC----------------GTGTG....................................................................................................................................................................................................18200.05100010
..........................................................................TGT-GGA-AC----------------GTGTGGCCTGCCGTGT.........................................................................................................................................................................................24200.05101000
................................................................................A-AC----------------GTGTGGCCTGCCGTGTCC.......................................................................................................................................................................................21200.05100010
droVir3
AGCTGCACCACCAGC-TTTGC----GTC------------------GC--------AGCAGAAGC--CGCTCATTGT-GGAGAC----------------GCCTGCCACACCGCAGCCAGGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........ACCAGC-TTTGC----GTC------------------GC--------AGCAGAA..............................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000010
.................TTGC----GTC------------------GC--------AGCAGAAGC--CGCTC.....................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
......ACCACCAGC-TTTGC----GTC------------------GC--------AGCA.................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
..............................................................AGC--CGCTCATTGT-GGAGAC----------------GCC......................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000100
..........................................................................................................CACACCGCAGCCAGGAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1811.001010000000000000000000000000000000000000000000000000000000000000
.................TTGC----GTC------------------GC--------AGCAGAAGC--C.........................................................................................................................................................................................................................................1911.001010000000000000000000000000000000000000000000000000000000000000
........................................................................ATTGT-GGAGAC----------------GCCTGCCACA...............................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000100
...................................................................................C----------------GCCTGCCACACCGCAGCCAGGAG..................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.........................................................GCAGAAGC--CGCTCATTGT-GGAGAC----------------GC.......................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
AGGTGCAGCAGCAGA-GGCAG----CA-------------------AG--------TGCAGCAACTCCTCCCG--------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........CAGCAGA-GGCAG----CA-------------------AG--------TGCAGC...............................................................................................................................................................................................................................................22100.101000010
...TGCAGCAGCAGA-GGCAG----CA-------------------A..............................................................................................................................................................................................................................................................20100.101100000
.........AGCAGA-GGCAG----CA-------------------AG--------TGCAGCAACTCC.........................................................................................................................................................................................................................................27100.101100000
droGri2
AGCAGTAGCAGCAGC-AGTTG----AC-------------------GT--------TGTGGCCGCCTTGCTCG--------------------------------------------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
GGCAGCAGCAACCAC-AATGG----AG-------------------GG--------GACCGGAGG--CGGCCGTAATAGGG-CCATACGTGTCACAGGAGGTGCGGACCGCCGTGCGC-----C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................G-------------------GG--------GACCGGAGG--CGGCCGTAA.................................................................................................................................................................................................................................21182.8351018000003300
.......................................................................................CGTGTCACAGGAGGTGCGGACCG...............................................................................................................................................................................................2362.501501500000000
..........................G-------------------GG--------GACCGGAGG--CGGCCGTAAT................................................................................................................................................................................................................................22182.394303800000500
......................................................................................ACGTGTCACAGGAGGTGCGGA..................................................................................................................................................................................................2162.331401300001000
......................................................................................ACGTGTCACAGGAGGTGCGGACC................................................................................................................................................................................................2362.331401210001000
.......................................................................................CGTGTCACAGGAGGTGCGGAC.................................................................................................................................................................................................2162.17130900301000
..............................................................................................CAGGAGGTGCGGACCGCCGTGC.........................................................................................................................................................................................22152.133202700202100
......................................................................................ACGTGTCACAGGAGGTGCGGAC.................................................................................................................................................................................................2262.001201000002000
..............................................................................................CAGGAGGTGCGGACCGCCGTGCG........................................................................................................................................................................................23151.602402200100100
.....................................................................................TACGTGTCACAGGAGGTGCGGAC.................................................................................................................................................................................................2361.5090900000000
..........................G-------------------GG--------GACCGGAGG--CGGCCGTAATAG..............................................................................................................................................................................................................................24181.442601700002700
.......................................................................................CGTGTCACAGGAGGTGCGGACC................................................................................................................................................................................................2261.3380710000000
..........................................................................................GTCACAGGAGGTGCGGACCGCC.............................................................................................................................................................................................2261.0060400100100
..........................G-------------------GG--------GACCGGAGG--CGGCCGTAATAGG.............................................................................................................................................................................................................................25181.00180900004500
.......................................................................................CGTGTCACAGGAGGTGCGGACCGC..............................................................................................................................................................................................2461.0060600000000
..........................G-------------------GG--------GACCGGAGG--CGGCCGTAATA...............................................................................................................................................................................................................................23180.891601200000400
......................................................................................ACGTGTCACAGGAGGTGCGGACCG...............................................................................................................................................................................................2460.8350400010000
......................................................................................ACGTGTCACAGGAGGTGCGG...................................................................................................................................................................................................2060.8350500000000
......................................................................................ACGTGTCACAGGAGGTGC.....................................................................................................................................................................................................1860.8350410000000
.....................................................................................TACGTGTCACAGGAGGTGCGGACCGCCG............................................................................................................................................................................................2860.8350400000100
.......................................................................................CGTGTCACAGGAGGTGCGGA..................................................................................................................................................................................................2060.8350400001000
..............................................................................................CAGGAGGTGCGGACCGCCGTGCGC-----..................................................................................................................................................................................24140.79110900002000
..........................................................................................GTCACAGGAGGTGCGGACCGCCG............................................................................................................................................................................................2360.6740400000000
.............................................................................AGGG-CCATACGTGTCACAGGAGGTGC.....................................................................................................................................................................................................2660.6740000000400
.........................................................................................TGTCACAGGAGGTGCGGACCGC..............................................................................................................................................................................................2260.6740300100000
.....................................................................................TACGTGTCACAGGAGGTGCGGACC................................................................................................................................................................................................2460.6740300100000
..........................................................................................GTCACAGGAGGTGCGGACCGCCGTG..........................................................................................................................................................................................2560.6740400000000
..............................................................................................CAGGAGGTGCGGACCGCCGTG..........................................................................................................................................................................................21150.6090900000000
......................................................................................ACGTGTCACAGGAGGTGCG....................................................................................................................................................................................................1960.5030200001000
.....................................................................................TACGTGTCACAGGAGGTGCGG...................................................................................................................................................................................................2160.5030300000000
..........................G-------------------GG--------GACCGGAGG--CGGCCGTAAA................................................................................................................................................................................................................................22180.5090500000400
.........................................................................................TGTCACAGGAGGTGCGGACCGCC.............................................................................................................................................................................................2360.5030300000000
.........................................................................................TGTCACAGGAGGTGCGGACCGCCG............................................................................................................................................................................................2460.5030200000100
.........................................................................TAATAGGG-CCATACGTGTCACAGGAG.........................................................................................................................................................................................................2660.5030000000300
..........................................................................................GTCACAGGAGGTGCGGACCGC..............................................................................................................................................................................................2160.5030000000300
......................................................................................ACGTGTCACAGGAGGTGCGGACCGC..............................................................................................................................................................................................2560.5030300000000
............................................................................TAGGG-CCATACGTGTCACAGGAGG........................................................................................................................................................................................................2460.5030200100000
..........................G-------------------GG--------GACCGGAGG--CGGCCGTA..................................................................................................................................................................................................................................20180.3970600000100
............................................................................TAGGG-CCATACGTGTCACAGGAGGTGC.....................................................................................................................................................................................................2760.3320000000200
.............................................................................AGGG-CCATACGTGTCACAGGAGG........................................................................................................................................................................................................2360.3320200000000
..........................................................................................GTCACAGGAGGTGCGGACCGCCGTGC.........................................................................................................................................................................................2660.3320200000000
.....................................................................................TACGTGTCACAGGAGGTGCGGACCGCC.............................................................................................................................................................................................2760.3320110000000
.........................................................................................TGTCACAGGAGGTGCGGACCG...............................................................................................................................................................................................2160.3320200000000
..........................................................................................GTCACAGGAGGTGCGGACCG...............................................................................................................................................................................................2060.3320200000000
........................................................................................GTGTCACAGGAGGTGCGGACC................................................................................................................................................................................................2160.3320200000000
.........................................................................TAATAGGG-CCATACGTGTCACAGGAGG........................................................................................................................................................................................................2760.3320100000100
........................................................................................GTGTCACAGGAGGTGCGGACCG...............................................................................................................................................................................................2260.3320200000000
.......................................................................................CGTGTCACAGGAGGTGCGGACCGCC.............................................................................................................................................................................................2560.3320200000000
..........................................................................................GTCACAGGAGGTGCGGAC.................................................................................................................................................................................................1860.3320200000000
............................................................................TAGGG-CCATACGTGTCACAGGAG.........................................................................................................................................................................................................2360.3320100100000
..............................................GG--------GACCGGAGG--CGGCCGTAATAG..............................................................................................................................................................................................................................23180.2850500000000
..........................G-------------------GG--------GACCGGAGG--CGGCCGTAATAGGG-...........................................................................................................................................................................................................................26180.2850400000100
..............................................GG--------GACCGGAGG--CGGCCGTAAT................................................................................................................................................................................................................................21180.2850500000000
.................ATGG----AG-------------------GG--------GACCGGAGG--CGGC......................................................................................................................................................................................................................................21200.2550000000500
..........................G-------------------GG--------GACCGGAGG--CGGCCGTAATAGGG-C..........................................................................................................................................................................................................................27180.2240200000200
.................................................................................................GAGGTGCGGACCGCCGTGCGC-----..................................................................................................................................................................................21140.2130200001000
.................................................................................................GAGGTGCGGACCGCCGTGCGC-----C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------22140.2130300000000
........................................................................................GTGTCACAGGAGGTGCGGACCGCCG............................................................................................................................................................................................2560.1710100000000
......................................................................................ACGTGTCACAGGAGGTGCA....................................................................................................................................................................................................1960.1710100000000
..........................................................................AATAGGG-CCATACGTGTCACAGG...........................................................................................................................................................................................................2360.1710100000000
..........................................................................................GTCACAGGAGGTGCGGACCGT..............................................................................................................................................................................................2160.1710000000100
...........................................................................................TCACAGGAGGTGCGGACCGCCG............................................................................................................................................................................................2260.1710100000000
........................................................................................GTGTCACAGGAGGTGCGGACCGCC.............................................................................................................................................................................................2460.1710100000000
..........................................................................................GTCACAGGAGGTGCGGACCGCCGT...........................................................................................................................................................................................2460.1710100000000
.........................................................................................TGTCACAGGAGGTGCGGAA.................................................................................................................................................................................................1960.1710100000000
......................................................................................ACGTGTCACAGGAGGTGCGGACCGCC.............................................................................................................................................................................................2660.1710100000000
........................................................................................GTGTCACAGGAGGTGCGGACAA...............................................................................................................................................................................................2260.1710010000000
.......................................................................................CGTGTCACAGGAGGTGCGGACCGCCG............................................................................................................................................................................................2660.1710100000000
...........................................................................................TCACAGGAGGTGCGGACCGCC.............................................................................................................................................................................................2160.1710100000000
...........................................................................................TCACAGGAGGTGCGGACCGC..............................................................................................................................................................................................2060.1710100000000
.........................................................................................TGTCACAGGAGGTGCGGACCGT..............................................................................................................................................................................................2260.1710100000000
.........................................................................................TGTCACAGGAGGTGCGGACCGCCGTG..........................................................................................................................................................................................2660.1710100000000
...........................................................................................TCACAGGAGGTGCGGACCGCCGT...........................................................................................................................................................................................2360.1710100000000
.............................................................................................ACAGGAGGTGCGGACCGCCGTGC.........................................................................................................................................................................................2360.1710100000000
..................................................................................CCATACGTGTCACAGGAGGT.......................................................................................................................................................................................................2060.1710100000000
......................................................................................ACGTGTCACAGGAGGTGCGGACA................................................................................................................................................................................................2360.1710100000000
.........................................................................................TGTCACAGGAGGTGCGGACA................................................................................................................................................................................................2060.1710010000000
...........................................................................................TCACAGGAGGTGCGGACCG...............................................................................................................................................................................................1960.1710100000000
........................................................................................GTGTCACAGGAGGTGCGGAC.................................................................................................................................................................................................2060.1710100000000
.........................................................................................TGTCACAGGAGGTGCGGACC................................................................................................................................................................................................2060.1710100000000
...........................................................................................TCACAGGAGGTGCGGACC................................................................................................................................................................................................1860.1710100000000
...................................................................................CATACGTGTCACAGGAGGTGCGGAC.................................................................................................................................................................................................2560.1710100000000
.........................................................................TAATAGGG-CCATACGTGTCACAGGA..........................................................................................................................................................................................................2560.1710100000000
..........................................................................AATAGGG-CCATACGTGTCACA.............................................................................................................................................................................................................2160.1710100000000
............................................................................TAGGG-CCATACGTGTCACAGGAC.........................................................................................................................................................................................................2360.1710010000000
.....................................................................................TACGTGTCACAGGAGGTGCGGACA................................................................................................................................................................................................2460.1710100000000
............................................................................TAGGG-CCATACGTGTCACAGGAGA........................................................................................................................................................................................................2460.1710100000000
.....................................................................................TACGTGTCACAGGAGGTGCGGAA.................................................................................................................................................................................................2360.1710100000000
....................................................................................ATACGTGTCACAGGAGGTGCGGA..................................................................................................................................................................................................2360.1710000000100
.............................................................................AGGG-CCATACGTGTCACAGGAG.........................................................................................................................................................................................................2260.1710100000000
.....................................................................................TACGTGTCACAGGAGGTGCGA...................................................................................................................................................................................................2160.1710100000000
.............................................................................................ACAGGAGGTGCGGACCGCCG............................................................................................................................................................................................2060.1710100000000
.....................................................................................TACGTGTCACAGGAGGTGCAA...................................................................................................................................................................................................2170.1410000001000
...............................................................................................AGGAGGTGCGGACCGCCGTGCGC-----..................................................................................................................................................................................23140.1420200000000
..............................................................................................CAGGAGGTGCGGACCGCCGT...........................................................................................................................................................................................20150.1320200000000
...............................................................................................AGGAGGTGCGGACCGCCGTGCG........................................................................................................................................................................................22150.1320200000000
..........................G-------------------GG--------GACCGGAGG--CGGCCGTAATAA..............................................................................................................................................................................................................................24180.1120200000000
.........................................................................TAATAGGG-CCATACGTGG.................................................................................................................................................................................................................18180.1120200000000
..................TGG----AG-------------------GG--------GACCGGAGG--CGGCCG....................................................................................................................................................................................................................................22180.1120000000200
..........................G-------------------GG--------GACCGGAGG--CGGCCGTAATAAA.............................................................................................................................................................................................................................25180.1120100000100
........................................................GACCGGAGG--CGGCCGTAATAGG.............................................................................................................................................................................................................................22180.1120100000100
..............................................GG--------GACCGGAGG--CGGCCGTAATA...............................................................................................................................................................................................................................22180.1120200000000
.................ATGG----AG-------------------GG--------GACCGGAGG--CGG.......................................................................................................................................................................................................................................20200.1020000000200
.................ATGG----AG-------------------GG--------GACCGGAGG--C.........................................................................................................................................................................................................................................18200.1020000000200
................................................................................................GGAGGTGCGGACCGCCGTGCGC-----T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------23140.0710100000000
..............................................................................................CAGGAGGTGCGGACCGCCGTGCGC-----C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------25140.0710100000000
..............................................................................................CAGGAGGTGCGGACCGCCGTGCGC-----T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------25140.0710100000000
..............................................................................................CAGGAGGTGCGGACCGCCGTGCGA-----..................................................................................................................................................................................24150.0710100000000
..............................................................................................CAGGAGGTGCGGACCGCCGTT..........................................................................................................................................................................................21150.0710100000000
..............................................................................................CAGGAGGTGCGGACCGCC.............................................................................................................................................................................................18150.0710100000000
..............................................................................................CAGGAGGTGCGGACCGCCG............................................................................................................................................................................................19150.0710100000000
..............................................................................................CAGGAGGTGCGGACCGCCGTGTT........................................................................................................................................................................................23150.0710010000000
..............................................................................................CAGGAGGTGCGGACCGCCGTGTA........................................................................................................................................................................................23150.0710100000000
.....................................................................................................TGCGGACCGCCGTGCGC-----C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------18170.0610100000000
..............................................GG--------GACCGGAGG--CGGCCGTAA.................................................................................................................................................................................................................................20180.0610100000000
.........................AG-------------------GG--------GACCGGAGG--CGGCCGTAAT................................................................................................................................................................................................................................23180.0610000000100
............................................................GGAGG--CGGCCGTAATAGGT-...........................................................................................................................................................................................................................19180.0610100000000
..........................G-------------------GG--------GACCGGAGG--CGGCCGTAATT...............................................................................................................................................................................................................................23180.0610100000000
..........................G-------------------GG--------GACCGGAGG--CGGCCGTAATAGA.............................................................................................................................................................................................................................25180.0610000000100
..............................................GG--------GACCGGAGG--CGGCCGTAATAGG.............................................................................................................................................................................................................................24180.0610100000000
........................................................GACCGGAGG--CGGCCGTAATAGGG-AA.........................................................................................................................................................................................................................25180.0610100000000
.....................................................................................TACGTGTCACAGGAGGTGA.....................................................................................................................................................................................................19180.0610100000000
..........................................................CCGGAGG--CGGCCGTAATAGG.............................................................................................................................................................................................................................20180.0610100000000
..........................G-------------------GG--------GACCGGAGG--CGGCCG....................................................................................................................................................................................................................................18180.0610100000000
........................................................GACCGGAGG--CGGCCGTAATAG..............................................................................................................................................................................................................................21180.0610100000000
..........................G-------------------GG--------GACCGGAGG--CGGCCGTAATAGGG-CCA........................................................................................................................................................................................................................29180.0610000001000
........................................................GACCGGAGG--CGGCCGTAATAA..............................................................................................................................................................................................................................21180.0610100000000
...............................................G--------GACCGGAGG--CGGCCGTAATAGG.............................................................................................................................................................................................................................23180.0610100000000
...........................................................CGGAGG--CGGCCGTAATAGGG-C..........................................................................................................................................................................................................................21180.0610100000000
..........................G-------------------GG--------GACCGGAGG--CGGCCGT...................................................................................................................................................................................................................................19180.0610100000000
.........................................................ACCGGAGG--CGGCCGTAATAGG.............................................................................................................................................................................................................................21180.0610100000000
..........................G-------------------GG--------GACCGGAGG--CGGCCGTAATC...............................................................................................................................................................................................................................23180.0610100000000
..............................................................................................CAGGAGGTGCGGACCGCTTA...........................................................................................................................................................................................20190.0510100000000
......................................................................................ACGTGTCACAGGAGGTGAA....................................................................................................................................................................................................19190.0510100000000
............CAC-AATGG----AG-------------------GG--------GACCGGAC.............................................................................................................................................................................................................................................20200.0510100000000
...........CCAC-AATGG----AG-------------------GG--------GACCGGAAA--..........................................................................................................................................................................................................................................22200.0510100000000
...........CCAC-AATGG----AG-------------------GG--------GACCGGAGG--CGGC......................................................................................................................................................................................................................................26200.0510000000100
............CAC-AATGG----AG-------------------GG--------GACCGGAGG--CGGCG.....................................................................................................................................................................................................................................26200.0510000000100
............CAC-AATGG----AG-------------------GG--------GACCGGAGG--..........................................................................................................................................................................................................................................21200.0510100000000
............CAC-AATGG----AG-------------------GG--------GACCGGAGC--..........................................................................................................................................................................................................................................21200.0510100000000
.............AC-AATGG----AG-------------------GG--------GACCGGAGG--CGGC......................................................................................................................................................................................................................................24200.0510000000100
...........CCAC-AATGG----AG-------------------GG--------GACCGGAGG--CGGCA.....................................................................................................................................................................................................................................27200.0510000000100
..............C-AATGG----AG-------------------GG--------GACCGGAGG--CGG.......................................................................................................................................................................................................................................22200.0510000000100
..............................................................AGG--CGGCCGTAATAGGG-C..........................................................................................................................................................................................................................18200.0510000000100
............CAC-AATGG----AG-------------------GG--------GACCGGA..............................................................................................................................................................................................................................................19200.0510100000000
................AATGG----AG-------------------GG--------GACCGGAGG--..........................................................................................................................................................................................................................................18200.0510100000000
droPer2
GGTGGCAGCGGCAGC-GGCAG----AG-------------------GT--------GGATGGAGCC-TGCTCAAAGG-GGA-GC---------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................TGGAGCC-TGCTCAAAGG-GGA-...........................................................................................................................................................................................................................20200.051010000
droAna3
GGGACGA-----------TGCGCGAGTTGCAGCAGAAGCAGATGCAGC--------------AG---TTCC------------------------AGCAGATGCGG-----------------A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GGTGGTGGTGGCAGT-GGCGG----CG-------------------GT--------GGTGGTGGTGTTCCCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AGATGTCACCGCGACCGGTGG----GC-------------------GT--------GTCGCCGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TGTTGCTCCAGCTGC-CGTTG----AT-------------------GC--------GGCTGCGCC--TGCTGCTGATG---------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AACAGCAGCAGCAGC-AACAG----GC-------------------GT------CGAACGGCGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TGATGAACCAGCAAC-AGCAG----CA-------------------G---------GGCGGCGG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AGGTGCACCAGCAGC-AGCAG----CA-------------------GT--------CGCAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
G----CAGCAGCAAC-AGCAG----GC-------------------GT------CGAATGGCGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GGCAGCGACAGCAGC-GGCGG----CA-------------------AC--------GACGACGGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
AGCAGCAGCAGCAGC-AGCAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
No Reads
droSim2
AACGCCAGCAGCGGA-CGATG----CA-------------------GCAGGTGAGCTTTGGCGAC------------A---------------------------------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
AGGAACACCAGCAAC-GG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AGGGGCAGCAGCAGT-GGCAG----CA-------------------GT--------AGTGGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GGAGGCGGCGGTGGC-AGCGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 04:13 AM