ID:

dwi_2318

 Coordinate:

scf2_1100000004852:640418-640568 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.9 -16.8 -16.5

Flybase annnotation

exon [dwil_GLEANR_19488:8]; CDS [Dwil\GK18789-cds]; intron [Dwil\GK18789-in]

Repeatable elements

NameClassFamilyStrand
Helitron-2_DVirRCHelitron+
mature
star
  1. scf2_1100000004729:4683-4707 -
  2. scf2_1100000004762:6368303-6368327 +
  3. dwi_2318  scf2_1100000004852:640543-640567 +
  4. scf2_1100000004959:349099-349123 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGGACCAGACGCTCCTTGGTGCTTCTTTGACTCAATGGCGGATAGAAAAGGTGAGATAAAATGATATCTTGCTTTATTTACATGGTACAGAATGGATATTATAGAAATTCCGCCTTAACCATGTCGATGTGAATAAATTCTGTCACGTTTTGTGTTTTTATACCCTTGCAGAGGGTATTATAAAATTGGTCAGATGTGTGTAACGCACAGAAGACGTTTCCGACTCCATAAAGTAATATATATTCTTGATC
*******************************************************************************************************************.......................(((((((.((((((((.....((((((((...))))))))))))))))))).))))......*************************************************** 		Read size # Mismatch Hit Count Total Norm Total V117
male body		 V118
embryo
 M045
female body
 M020
head
..............................CTCAATGGCGGATAGAAAAGGTGAG.................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
....................................GGCGGATAGAAAAGGTGA..................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0
..................................ATGGCGGATAGAAAAGGTGA..................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
...................................................................................................................TAACCATGTCGATGTGAATAAATTCT.............................................................................................................. 26 0 1 1.00 1 0 1 0 0
...............................................................................................................................................................................TATTATAAAATTGGTCAGATGTGTG................................................... 25 0 4 0.50 2 0 2 0 0
...................................................................................................................................................................................ATAAAATTGGTCAGATGTGTG................................................... 21 0 4 0.25 1 0 1 0 0
..................................................................................................................................................................................TATAAAATTGGTCAGATGTG..................................................... 20 0 4 0.25 1 0 0 0 1
...............................................................................................................................................................................TATTATAAAATTGGTCAGATGTGTGT.................................................. 26 0 4 0.25 1 0 1 0 0
.............................................................................................................................................................................GGTATTATAAAATTGGTCAGATGTG..................................................... 25 0 4 0.25 1 0 0 1 0
...............TTGATGGTTCTTTGACTGAAT....................................................................................................................................................................................................................... 21 3 5 0.20 1 0 0 1 0
.......................................................................................................................................................................................AATTGGTCAGATGTGTGTAACGCACA.......................................... 26 0 5 0.20 1 0 1 0 0
...................................................................................................................................................................CCTTGCAGAGGGTATTATAAAATTGGT............................................................. 27 0 20 0.05 1 0 1 0 0
....................................................................................................................................................................................................................GACGGTTCCGACTCCCCAAAG.................. 21 3 20 0.05 1 0 0 1 0
..............................................................................................................................................................................GTATTATAAAATTGGTCAGATG....................................................... 22 0 20 0.05 1 0 1 0 0
........................................................................................................................................................TGTTTTTATACCCTTGCAGAGGG............................................................................ 23 0 20 0.05 1 0 1 0 0

Anti-sense strand reads

ACCTGGTCTGCGAGGAACCACGAAGAAACTGAGTTACCGCCTATCTTTTCCACTCTATTTTACTATAGAACGAAATAAATGTACCATGTCTTACCTATAATATCTTTAAGGCGGAATTGGTACAGCTACACTTATTTAAGACAGTGCAAAACACAAAAATATGGGAACGTCTCCCATAATATTTTAACCAGTCTACACACATTGCGTGTCTTCTGCAAAGGCTGAGGTATTTCATTATATATAAGAACTAG
***************************************************.......................(((((((.((((((((.....((((((((...))))))))))))))))))).))))......******************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
.................................................................................................................................................................TGGGAACGTCTCCCATAATATTTT.................................................................. 24 0 20 0.45 9 9 0 0
......................................................................................................................................................................................TTTAACCAGTCTACACACATTGCGT............................................ 25 0 5 0.40 2 2 0 0
........................................................................................................................................................................................TAACCAGTCTACACACATTGCGTGTCTT....................................... 28 0 5 0.20 1 1 0 0
..........................................................................................................................................................................................ACCAGTCTACACACATTGCGTGTCTTC...................................... 27 0 5 0.20 1 1 0 0
..........................................................................................................................................................................................ACCAGTCTACACACATTGCGTGTCT........................................ 25 0 5 0.20 1 1 0 0
........................................................................................................................................................................................TAACCAGTCTACACACATTGC.............................................. 21 0 5 0.20 1 0 1 0
..........................................................................................................................................................................................ACCAGTCTACACACATTGCGT............................................ 21 0 6 0.17 1 1 0 0
................................................................................................................................................................ATGGGAACGTCTCCCATAATAT..................................................................... 22 0 20 0.05 1 1 0 0
...................................................................................................................................................................................................CACACATTGCAGGTCTTC...................................... 18 2 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004852:640368-640618 + dwi_2318 TGGACCAGACGCTC--C----------------TTGGTGCTTC----------TTTG-ACTCAATGG-------------------------------------------------------------------------------------------C-------G-------------------------GA------------------------------TAGAAAAGGTGAG------ATA--AAATG------------ATATCTT---GC---------------------------------------------T-TTATTTACATGGTACAGAATGGATA--------TTA-------TAGAAAT--T---------------CCGCCTTAACCATGTCGATG-------------------------------TG-------------------------------------------------------------------AATAAA--------------T----------------TCT-----GTC---------------ACGTTTTGTGTTTTTATACCC-------T------TG-------CAG--------------AGGGTATTATAAAATTGGTCA-------GATGTGTGTAACGCACAGAA---GACGTTTCCGACTCCATAAAGT-AATATATATTCTTGATC
droVir3 scaffold_13045:56042-56265 - ATT---------------------------------------------------ATG---------G-------AAAAAAAAAATGTTACATATGTATATATTTTTATATATATCTTTATATA----------------T------A-GAACGAATTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAG------------------------------------------------------------------------------------------------------------------------------------------TATAA--------------ATTTATCCCCCTTCTTGTTGGGGTAGAGTCTAAAG-----TCA---------------TTTTTGAATTTTTTTATACCC-------T------TG-------CAG--------------AGGGTATTATAATTTTGTCCT-------GAAATATGAAACGCATAGAAGGAGACATCTCCGACCCTATAAAGT--ATATATATTCTTAATC
droMoj3 scaffold_483:1894-2147 + TTC----------TTT--TAT--------------------------------------A-------------------------------------------------------------------------------T------A-TATGGAAGATA-------G--------------------------A----------------------------------------------AGATAT--AGAT--------------TATTTG---TT---------------------------------------------T-TCATTTGAGTATTATAGGATAAACA--------ATACATAGA---------CTACACATGTAGAACAAACTTT--------TTCAACA-------------------------------CCGA--------------------------------------------------------------------AAA--------------A----------------TCTGTCACGTAGC------------T--ATTTTTATTTTTTATACCCTGAACC--------CATTTTCAATGGGAA--------ATCAGGGTATAATGGTTTTGTTGA-------AATGTATGTAACAGGCAGAAGGAGGCGTGGCAGACCCCACAAAGT--ATATATATTCTTGATC
droGri2 scaffold_14906:3046468-3046655 + ATA----------TCT--T----------------AGT---------------TTAT-GTATCTC-ACAA----GCTA--------------------------------------------------------------------------CGA--AATAT------------------------------------------TTTCAGCAAAGCTATTTTGA---------------------------------------------------GC---------------------------------------------A--------------------------T-------------------------T--T------------------------------ATA-------------------------------TA-------------------------------------------------------------------TTTAAA--------------T----------------TAG-----CCT---------------GTTTTTTATATTTTGAGATTC-------T------TA-------TA---------------AGGCTATATTGGAGTTTTGGA-------AAAGTACGTAACAGGCTGGAGGAAGCTTCTCCAAC-CTATAAATT--ATATTTATTCTTGATC
dp5 Unknown_group_793:2936-3183 + TGTAGT------TT--T----------------GTAGTCGTTATTTGTAGTAATT-GCACT-----G-------CAAATTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---TTTCTTGC---------------------------------------------T-T-----------------TTGGCTA--------TA-------AAAATTATCC--T------------------------------ATCTGA-TCCAA------ATTCAGCAAC------TGGATAGATATGGTTAT-----------------------------------------------------------------------------------------TCT------CT--A------------TGCTTCTGCGTTTTTATACCCGATACT--------CA-------AA------ATGAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGAATGGTGTAACGTCCAGAAGGAATCGTTCCCGACCCCATAAAGT--ATATATATTCTTGATC
droPer2 scaffold_2022:2576-2808 - GAGAG--------A--------------------------------------------------------------------------------------------------------------------------------------CAGG-----GC-------G--------------------------------------------------------------------AG------AAA--AAATGAAA-T--------TGTTTTCTTGA---------------------------------------------T-G-----------------CTGGCTA--------TA-------ATAGTAATAC--G------------------------------ATCCAA-TTCAG------ATTCTGCAGT------CTAAAAGATATGGTCAT-----------------------------------------------------------------------------------------TCT------CT--A------------CGATTCTGCGTTTTTATACCCGATACT--------CA-------AA------ATGAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCTATAAAGT--ATATATATTCTTGATC
droAna3 scaffold_13043:211090-211321 + TCC---------------------------------------------------TTGAGCTCAACGG-------------------------------------------------------------------------------------------C-------G-------------------------GC------------------------------GAACATCGGTGAGTGAATATCACTAAATT------------AAATTTG---AATAGATTTGCGACGCGAACAGTAAATTTTAGCAAGGCATGA-------------------------------A--------TTG------------------------------------------------------------------------------------------------------------------------------------------TATAATTTTG----GATTAA--------------T----------------AAT-----TTCAT------------G-----AATAATTTTTATACCC-------T------TG-------CAG--------------AGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGT--ATATATATTCTTGATC
droBip1 scf7180000395575:24899-25136 + TGGACC-------TTT--TAGAGG--------------GC-------------TTAT-CA---------------------------------------------------AATCC-----------------------CGATGACACCACG-----GC-------G-------------------------GG-------------------------------------------------TAA--GGATGAAAGCTCGTTTGA---TATTGTGC---------------------------------------------A-TT----------------TTGAACAT-------------------------C--A------------------------------ATATAA-TATAG------AGTTTGAGAA------CGAAGAG--------------------------------------------------------------CTTGAC--------------T----------------TTT-----TCT---------------AATTTTTCTATTTTTATACCC-------T------TG-------CAG--------------AGGGTATTATAATTTTGTCCA-------AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGT--ATATATATTCTTGATC
droKik1 scf7180000302486:261992-262201 - ACGTG--------C--C----------------TTAATCCTTA----------------------------------------------------------------------TTTTTATAAA----------------T------A-AAAAGAATAAA-------GA---AGA--TCAAGTTTT-------------------------------------------------------------------------------AA---TATCA--------------------------------------------------------------TACATAATAGATA--------TTA------------------------------------------------------------------------------------------------------------------------------------------TATAATTTTTTACCATTTTA--------------A----------------ATA-----TA----------------GACTTCTTTCTTTTTATACCC-------T------TG-------C----------------AGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGT--ATATATATTCTTGATC
droFic1 scf7180000451630:11616-11847 - TTT---------------------------------------------------TTA-AATCAATAGCGAATTTCAGATAAAATT-------------TTATTTTTTTA--GCTGC-----------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGGAAAGATTGGA---AAATATA--------------------------------------T-ATAGAAATTTTGGCAA---------------------------------------------------------------------------------ACATTATAA--------------TTTTGTTTTCATCATT-----------------GT------TT--T--------------CGTCATTGTTTTTATACCC-------T------TG-------CAGAGC--------AAAAGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGT--ATATATATTCTTGATC
droEle1 scf7180000491024:300-542 + TTT---------------------------------------------------TTA-A------------------------------------------TTTTTGT---------------TTAGTTCTTCGACATA-------------------------------------------------------------------------------------TAGCAATGGTTAA------ATA--ATTCA------------GAATTAT---GG-----------------------------------TT--------T-AAATTTCATCAAAATCGGACGACTA--------TATCATATA---------GCTCCCATA-GGAGCAAT------------CGGAAAA-------------------------------TGAA--------------------------------------------------------------------AAA--------------A----------------ATTAT---------------------AACTTGGCTGTTTTTATACCC-------T------TG-------CAG--------------AGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGT--ATATATATTCTTGATC
droRho1 scf7180000771933:31563-31784 - TCT---------------------------------------------------TTG-AGACCATTG-------CAAATAAAAATGTG---------------------------------------------------------------------------CTAAAATCAAATCGCAAATTCGATTGCCGGCTCAAAGTGATTTTCTATAAATCCACCTTAA---------------------------------------------------GT---------------------------------------------G--------------------------A-------------------------G----------------------------------TG-------------------------------TG-------------------------------------------------------------------GATTTA--------------T----------------TTT-----GTTAC------------CAAC--TATTATATTTATACCC-------T------TG-------CAG--------------AGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGT--ATATATATTCTTGATC
droBia1 scf7180000302105:5985-6245 - AGGAACCGAAGCTT--CGAACGTATTCGATCTG---------ATTTGTATTAATTTGTACTCAATGG-------CAAATAAAATTCTT------GTAGCATTTTTTATACGTTTCTTAATGAA----------------T------A-AAAAAAATAAATATTTAAAA---AAA--TCCAGT--------------------------------------CTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG-------------------------------TG-------------------------------------------------------------------TGTGAA--------------T----------------TTT-----TCA---------------TTTCTGTTTATTTTTATACCC-------T------TG-------CAG--------------AGGGTATAATAATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCCATAAAGT--ATATATATTATTGATC
droTak1 scf7180000411411:6921-7167 - GTT----------ACT--T----------------GGCAACTT----------T-------------------------------------------------------------------------------------T------A-TAATAAAAATT-------G--------------------------A----------------------------------------------AAATAA--AAA------TTG-----A--TTT----------------------GAAATAACTCTTG---AACTGTGGGGTACAT---------TGGTTTAAAA------T-------------------------TTATATATGTATAATCTACGCTTTA---------ATAC---CTTT-----------------CTGTTG----------------------------------------------------------------------AT--A--------------T----------------GCC-----A-T--A-----TGTCCCC----AACATATTTTTATACCC-------T------TG-------TAG--------------AGGGTATTATAATTTCAGTCA-------GATGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCACATAAAGT--ATATATATTCTTGATC
droEug1 scf7180000407335:48472-48691 + TAGGACAAATT---------AAAA--------------CC-------------TTGG-TT---------------------------------------------------ACTCT-----------------------T----------------------------------------------------------------------------------------------AAGTGGAGTACA--------------------------------------------------------------------------------------------------GGA---AAGAAAA--------------------------------------A-TTAAAAACTTTGGCTTACACTTACAGTCTGACAC------------TG--------------------------------------------------------------TTAAGAACTTA--------------T----------------TTG-----GACA----------------CTATCGTGTTTTTATACCC-------G------TA-------AAG--TCA------AAAAGGGTATATTAGGTTCGTTGA-------AAAGTATGTAACAAGTAGAAGGAAGCGTTTCTGACCCTATAAAGT--ATATATATTCTTGATC
dm3 chrU:1863336-1863532 + CTT---------------------------------------------------TTT-TTACTTTTA-------CACA--------------------------------------------------------------------------GAA--AATCTTTTAAA---AAATGTTTAGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------TATAAT--------------T-----------------CT------TT--CTATTC------TTGTTTCTCTA-TTTTATACTCGTTACT--------CG-------TACAAT--------AAAAGGGTATACTAGATTCTTTGA-------GAAGTATGTAACAGGCAGAAGGCACCGTTTCCGAATGTATAAAAA--ATATATATTCTTGATC
droSim2 3l:23719437-23719635 + GAAAACATAACAT-----AATATATAATATTTC--------------------------------------------------------------------------A---------------TTTGTATTTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGT-------AGGTA--------ACACCTATTTTTGAA-------ATATTTATAAAATATCAT--------TTCAACT-------------------------------TA-------------------------------------------------------------------TGTGAG--------------T----------------TCTTTTTAGTTTC------------C----ATTTTATTTTTATA--------------------------------------------TAGTATACTAGATTCCT----------------TGTAACAGGCAGTAAGAAGCATTTCAGACCATATAAAGT--ATAAATATTCTTGATC
droSec2 scaffold_18:16362-16557 - ATT----------TCT--TATATATTTTATTTG---------------------------------------------------------------------------------------------GTTTAAATGGGTA-------------------------------------------------------------------------------------TTGAAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTAAAAGTTTTAATATAAAATTC-----------------CTGTCG----------------------------------------------------------------------AT--C--------------T----------------TTC-----GTTAC------------T----AGC--------------GTTACTCTTACTTACG-------TAGAGT--------AAAAGGGTATACTAGATTCGTTAA-------AAAGTATGTAACTGGCAGAAGGAAACGTTTCCAACCAAATAAGGT--ATATATATTCTTGATC
droYak3 v2_chrUn_317:1449-1675 - TTA----------GTT--C----------------A-----TT----------TTCG-ACCCCAT-A------------------------------------------------------------------------T----------------------------------------------------------------------------------------------AAATGAAGATAA--AGATA------------ATATTTC---GATACATTTTCT-----TAAAGTAATTCTTA---AACTAAAAATTACGT---------TA-----------------------------------------------------------------------TTTACG-------------------------------TT-------------------------------------------------------------------AATGAA--------------A----------------TCT------------------------CTTATTGAGTAATTATACCCGTTACT--------CG-------TAGAGT--------AAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGGCTGAAGGAAGCGTTTCCGACCATATAAAGT--ATATATATTCTTGATC
droEre2 scaffold_4845:9466307-9466542 + AAAAGTG------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----ATAA--GAAGA------------ATATTTT---CT---------------------------------------------T-TCATTC-----------------------------------------------------------------------------------------ACAGTATTATTTTGGAAT------CGAATGTATAAGGTGATACTACATTTAATTATATTAAATGAAAATTACCTAACAAAGTAC--------------TTTTGA-------------------------------------------------------AGTGATGTTTTTATACTCGTTACT--------CG-------TAGAGT--------TA-AAGGTATACCAGATTCGTTGA-------CAAGTAGGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTTTATATATATTCTTGATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TGGACCAGACGCTC--C----------------TTGGTGCTTC----------TTTG-ACTCAATGG-------------------------------------------------------------------------------------------C-------G-------------------------GA------------------------------TAGAAAAGGTGAG------ATA--AAATG------------ATATCTT---GC---------------------------------------------T-TTATTTACATGGTACAGAATGGATA--------TTA-------TAGAAAT--T---------------CCGCCTTAACCATGTCGATG-------------------------------TG-------------------------------------------------------------------AATAAA--------------T----------------TCT-----GTC---------------ACGTTTTGTGTTTTTATACCC-------T------TG-------CAG--------------AGGGTATTATAAAATTGGTCA-------GATGTGTGTAACGCACAGAA---GACGTTTCCGACTCCATAAAGT-AATATATATTCTTGATCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................CTCAATGG-------------------------------------------------------------------------------------------C-------G-------------------------GA------------------------------TAGAAAAGGTGAG------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
.................................................................GG-------------------------------------------------------------------------------------------C-------G-------------------------GA------------------------------TAGAAAAGGTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100
...............................................................ATGG-------------------------------------------------------------------------------------------C-------G-------------------------GA------------------------------TAGAAAAGGTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
..............................................................................................................................................................................................................................................................................................................................................................................................................TAACCATGTCGATG-------------------------------TG-------------------------------------------------------------------AATAAA--------------T----------------TCT-----..........................................................................................................................................................................2611.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATAAAATTGGTCA-------GATGTGTG.......................................................2540.50200020
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAATTGGTCA-------GATGTGTG.......................................................2140.25100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAATTGGTCA-------GATGTG.........................................................2040.25110000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATAAAATTGGTCA-------GATGTGTGT......................................................2640.25100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATTATAAAATTGGTCA-------GATGTG.........................................................2540.25101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGGTCA-------GATGTGTGTAACGCACA..............................................2650.20100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-------T------TG-------CAG--------------AGGGTATTATAAAATTGGT........................................................................27200.05100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTATAAAATTGGTCA-------GATG...........................................................22200.05100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTTATACCC-------T------TG-------CAG--------------AGGG.......................................................................................23200.05100010
droVir3
ATT---------------------------------------------------ATG---------G-------AAAAAAAAAATGTTACATATGTATATATTTTTATATATATCTTTATATA----------------T------A-GAACGAATTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAG------------------------------------------------------------------------------------------------------------------------------------------TATAA--------------ATTTATCCCCCTTCTTGTTGGGGTAGAGTCTAAAG-----TCA---------------TTTTTGAATTTTTTTATACCC-------T------TG-------CAG--------------AGGGTATTATAATTTTGTCCT-------GAAATATGAAACGCATAGAAGGAGACATCTCCGACCCTATAAAGT--ATATATATTCTTAATCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................TA----------------T------A-GAACGAATTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAG------------------------------------------------------------------------------------------------------------------------------------------TAT..................................................................................................................................................................................................................................2130.331000000000000000000000000010000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGTTGGGGTAGAGTCTAAAG-----..........................................................................................................................................................................2340.251000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCATAGAAGGAGACATCTC................................2350.201000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCCTTCTTGTTGGGGTAGAG......................................................................................................................................................................................22170.122000000000000000000000000100001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCATAGAAGGAGACATCTCCGACC...........................27200.102000000000000000000000000000020000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCATAGAAGGAGACATCTCCGACCCT.........................29150.071000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCCCTTCTTGTTGGGGTAGAG......................................................................................................................................................................................23160.061000000000000000000000000010000000000000000000000000000000000000
droMoj3
TTC----------TTT--TAT--------------------------------------A-------------------------------------------------------------------------------T------A-TATGGAAGATA-------G--------------------------A----------------------------------------------AGATAT--AGAT--------------TATTTG---TT---------------------------------------------T-TCATTTGAGTATTATAGGATAAACA--------ATACATAGA---------CTACACATGTAGAACAAACTTT--------TTCAACA-------------------------------CCGA--------------------------------------------------------------------AAA--------------A----------------TCTGTCACGTAGC------------T--ATTTTTATTTTTTATACCCTGAACC--------CATTTTCAATGGGAA--------ATCAGGGTATAATGGTTTTGTTGA-------AATGTATGTAACAGGCAGAAGGAGGCGTGGCAGACCCCACAAAGT--ATATATATTCTTGATCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGACCCCACAAAGT--ATATA...........21200.102000020
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAGGCGTG..................................26200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................................TCAACA-------------------------------CCGA--------------------------------------------------------------------AAA--------------A----------------TCTGT.............................................................................................................................................................................19200.051100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCAGAAGGAGGCGTGGC................................21200.051000100
..............................................................................................................................................................................................................................................................................................................................................................................................TGTAGAACAAACTTT--------TTCAACA-------------------------------CCGA--------------------------------------------------------------------AA..................................................................................................................................................................................................................28200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................TGTAGAACAAACTTT--------TTCAACA-------------------------------............................................................................................................................................................................................................................................................................................22200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGGCGTGGCAGACCCCAC.......................22200.051000010
....................................................................................................................................................................................................................................................................................................................................................................................................ACAAACTTT--------TTCAACA-------------------------------CCG.........................................................................................................................................................................................................................................................................................19200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................TTT--------TTCAACA-------------------------------CCGA--------------------------------------------------------------------AAA--------------A----------------TCTGTC............................................................................................................................................................................24200.051100000
droGri2
ATA----------TCT--T----------------AGT---------------TTAT-GTATCTC-ACAA----GCTA--------------------------------------------------------------------------CGA--AATAT------------------------------------------TTTCAGCAAAGCTATTTTGA---------------------------------------------------GC---------------------------------------------A--------------------------T-------------------------T--T------------------------------ATA-------------------------------TA-------------------------------------------------------------------TTTAAA--------------T----------------TAG-----CCT---------------GTTTTTTATATTTTGAGATTC-------T------TA-------TA---------------AGGCTATATTGGAGTTTTGGA-------AAAGTACGTAACAGGCTGGAGGAAGCTTCTCCAAC-CTATAAATT--ATATTTATTCTTGATCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
TGTAGT------TT--T----------------GTAGTCGTTATTTGTAGTAATT-GCACT-----G-------CAAATTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---TTTCTTGC---------------------------------------------T-T-----------------TTGGCTA--------TA-------AAAATTATCC--T------------------------------ATCTGA-TCCAA------ATTCAGCAAC------TGGATAGATATGGTTAT-----------------------------------------------------------------------------------------TCT------CT--A------------TGCTTCTGCGTTTTTATACCCGATACT--------CA-------AA------ATGAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGAATGGTGTAACGTCCAGAAGGAATCGTTCCCGACCCCATAAAGT--ATATATATTCTTGATCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGAA............................................................1843.751501100100120
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGAATGGTG.......................................................2323.5070100000150
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGAAA...........................................................19121.081301100001010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTCCCGACCCCATAAAGT--ATA.............2411.0010000000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGAATGGT........................................................2221.0020000001010
...AGT------TT--T----------------GTAGTCGTTATTTGTAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGAATCGTTCCCGACCCCA........................2211.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGAATGGTC.......................................................2321.0020000000020
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGGTAAAAG.................................................................20200.851700000000170
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAGATTTGTGGTAAAAGTG...............................................................21200.601200000000120
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTTAT-----------------------------------------------------------------------------------------TCT------CT--A------------TGCTTCTGC...............................................................................................................................................2320.5010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGAATGGTGTA.....................................................2520.5010000000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGAAAA..........................................................20200.4080600000200
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTTGTGGTAAAAGTGGAA............................................................2230.3310000000010
......................................................................................................................................................................................................................................................................................................................................................TTGGCTA--------TA-------AAAATTATCC--T------------------------------ATCTG.........................................................................................................................................................................................................................................................................................................................2530.3310100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTGGTAAAAGTGGAA............................................................1930.3310100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGTAAAAGTGGAAA...........................................................18130.3140400000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AA------ATTCAGCAAC------TGGATAGATATGG...............................................................................................................................................................................................................................................................................25120.2530100000200
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGTGGTAAAAGTGG..............................................................19200.2550000000050
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------ATGAGTATTGGGGTATATT.................................................................................21200.2040000004000
................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAA------ATTCAGCAAC------TGGATAGATA..................................................................................................................................................................................................................................................................................25120.1720000000020
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGATTTGTGGTAAAAGTG...............................................................20200.1530000000300
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGTATTGGGGTATATTAG...............................................................................21200.1530000000030
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGAAC...........................................................1980.1310100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTAGATTTGTGGTAAA...................................................................20200.1020200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATACT--------CA-------AA------ATGAGTATTGGGGTA.....................................................................................25200.1020200000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCCGATACT--------CA-------AA------ATGAG...............................................................................................20200.1020200000000
............................................................T-----G-------CAAATTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---TTTCTTGC---------------------------------------------T-T-----------------TTGGC............................................................................................................................................................................................................................................................................................................................................................................................25200.1020200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATTAGATTTGTGGTAAAAGTG...............................................................24200.1020000000200
....................................................................................................................................................................................................................................................................................................................................................................................................................................A------ATTCAGCAAC------TGGATAGATATGG...............................................................................................................................................................................................................................................................................24120.0810100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................TGA-TCCAA------ATTCAGCAAC------TGG.........................................................................................................................................................................................................................................................................................21140.0710100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................CTGA-TCCAA------ATTCAGCAAC------TGG.........................................................................................................................................................................................................................................................................................22140.0710100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACT--------CA-------AA------ATGAGTATTGGGGTAT....................................................................................24200.0510000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACGTCCAGAAGGAATCGTT..................................21200.0510000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTAGATTTGTGGTAAAAGTG...............................................................23200.0510000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTTTTATACCCGATACT--------CA-------AA------ATGA................................................................................................27200.0510000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGTATATTAGATTTGTGGTAAAAGTG...............................................................29200.0510000001000
............................................................................AATTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---TTTCTTGC---------------------------------------------T-T-----------------TTGG.............................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATTAGATTTGTGGTAAAAGTG...............................................................25200.0510000000001
..................................................................................................................................................................................................................................................................................................................................T-T-----------------TTGGCTA--------TA-------AAAATTA..................................................................................................................................................................................................................................................................................................................................................................18200.0510100000000
droPer2
GAGAG--------A--------------------------------------------------------------------------------------------------------------------------------------CAGG-----GC-------G--------------------------------------------------------------------AG------AAA--AAATGAAA-T--------TGTTTTCTTGA---------------------------------------------T-G-----------------CTGGCTA--------TA-------ATAGTAATAC--G------------------------------ATCCAA-TTCAG------ATTCTGCAGT------CTAAAAGATATGGTCAT-----------------------------------------------------------------------------------------TCT------CT--A------------CGATTCTGCGTTTTTATACCCGATACT--------CA-------AA------ATGAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCTATAAAGT--ATATATATTCTTGATCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................AAA-T--------TGTTTTCTTGA---------------------------------------------T-G-----------------CTGG.............................................................................................................................................................................................................................................................................................................................................................................................21200.459090000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTATATTAGATTTGTGGTA.....................................................................20200.306000006
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGTAAAAGTGGATGTGTGTAAC...................................................25200.153000003
....................................................................................................................................................................................................................................................................................................................................................................................ATAC--G------------------------------ATCCAA-TTCAG------ATTCTGCAG...................................................................................................................................................................................................................................................................................................25200.102020000
....................................................................................................................................................................................................................................................................................................................................................................................ATAC--G------------------------------ATCCAA-TTCAG------ATTCTGCAGT------CT..........................................................................................................................................................................................................................................................................................28200.102200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACCCGATACT--------CA-------AA------ATGAG...............................................................................................22200.051010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATATGGTCAT-----------------------------------------------------------------------------------------TCT------CT--A------------CGA.....................................................................................................................................................23200.051010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGTCAT-----------------------------------------------------------------------------------------TCT------CT--A------------CGATTCTGCGTT............................................................................................................................................26200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGGTAAAAGTGGATGT..........................................................20200.051000010
droAna3
TCC---------------------------------------------------TTGAGCTCAACGG-------------------------------------------------------------------------------------------C-------G-------------------------GC------------------------------GAACATCGGTGAGTGAATATCACTAAATT------------AAATTTG---AATAGATTTGCGACGCGAACAGTAAATTTTAGCAAGGCATGA-------------------------------A--------TTG------------------------------------------------------------------------------------------------------------------------------------------TATAATTTTG----GATTAA--------------T----------------AAT-----TTCAT------------G-----AATAATTTTTATACCC-------T------TG-------CAG--------------AGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGT--ATATATATTCTTGATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................TAGCAAGGCATGA-------------------------------A--------TTG------------------------------------------------------------------------------------------------------------------------------------------TATAATTTTG----.......................................................................................................................................................................................................................2711.001001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTTGGTCA-------AAAGTGTGCAACGC.................................................26200.459090000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AAAGTGTGCAACGCAGTGAAGGAGAC.....................................27200.306060000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACGCAGTGAAGGAGACATCTCCG..............................27200.153000030
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCA-------AAAGTGTGCAACGCAG...............................................21200.153300000
............................................................TCAACGG-------------------------------------------------------------------------------------------C-------G-------------------------GC------------------------------GAACATCGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102020000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTTGGTCA-------AAAGTGTGCAAC...................................................24200.102002000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------T------TG-------CAG--------------AGGGTATTATAATTTTGGTCA-------...............................................................28200.102200000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------CAG--------------AGGGTATTATAATTTTGGTC.......................................................................24200.051010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATAATTTTGGTCA-------AAAGTGTG.......................................................23200.051100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTTATACCC-------T------TG-------CAG--------------AGG........................................................................................22200.051010000
TCC---------------------------------------------------TTGAGCTCAACGG-------------------------------------------------------------------------------------------C-------G-------------------------GC------------------------------GAACATC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
................................................................CGG-------------------------------------------------------------------------------------------C-------G-------------------------GC------------------------------GAACATCGGTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTGCAACGCAGTGAAGGAGA......................................23200.051000001
............................................................TCAACGG-------------------------------------------------------------------------------------------C-------G-------------------------GC------------------------------GAACATCGGTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGTCA-------AAAGTGTGCAACGCAGTGA............................................27200.051000001
...............................................................ACGG-------------------------------------------------------------------------------------------C-------G-------------------------GC------------------------------GAACATCGGTGAGTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
.................................................................GG-------------------------------------------------------------------------------------------C-------G-------------------------GC------------------------------GAACATCGGTGAGTGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
.CC---------------------------------------------------TTGAGCTCAACGG-------------------------------------------------------------------------------------------C-------G-------------------------GC------------------------------GAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
............................................................TCAACGG-------------------------------------------------------------------------------------------C-------G-------------------------GC------------------------------GAACATCGGTGAGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
droBip1
TGGACC-------TTT--TAGAGG--------------GC-------------TTAT-CA---------------------------------------------------AATCC-----------------------CGATGACACCACG-----GC-------G-------------------------GG-------------------------------------------------TAA--GGATGAAAGCTCGTTTGA---TATTGTGC---------------------------------------------A-TT----------------TTGAACAT-------------------------C--A------------------------------ATATAA-TATAG------AGTTTGAGAA------CGAAGAG--------------------------------------------------------------CTTGAC--------------T----------------TTT-----TCT---------------AATTTTTCTATTTTTATACCC-------T------TG-------CAG--------------AGGGTATTATAATTTTGTCCA-------AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGT--ATATATATTCTTGATCSizeHit CountTotal NormTotal
No Reads
droKik1
ACGTG--------C--C----------------TTAATCCTTA----------------------------------------------------------------------TTTTTATAAA----------------T------A-AAAAGAATAAA-------GA---AGA--TCAAGTTTT-------------------------------------------------------------------------------AA---TATCA--------------------------------------------------------------TACATAATAGATA--------TTA------------------------------------------------------------------------------------------------------------------------------------------TATAATTTTTTACCATTTTA--------------A----------------ATA-----TA----------------GACTTCTTTCTTTTTATACCC-------T------TG-------C----------------AGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGT--ATATATATTCTTGATCSizeHit CountTotal NormTotal
No Reads
droFic1
TTT---------------------------------------------------TTA-AATCAATAGCGAATTTCAGATAAAATT-------------TTATTTTTTTA--GCTGC-----------------------C------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGGAAAGATTGGA---AAATATA--------------------------------------T-ATAGAAATTTTGGCAA---------------------------------------------------------------------------------ACATTATAA--------------TTTTGTTTTCATCATT-----------------GT------TT--T--------------CGTCATTGTTTTTATACCC-------T------TG-------CAGAGC--------AAAAGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGT--ATATATATTCTTGATCSizeHit CountTotal NormTotal
No Reads
droEle1
TTT---------------------------------------------------TTA-A------------------------------------------TTTTTGT---------------TTAGTTCTTCGACATA-------------------------------------------------------------------------------------TAGCAATGGTTAA------ATA--ATTCA------------GAATTAT---GG-----------------------------------TT--------T-AAATTTCATCAAAATCGGACGACTA--------TATCATATA---------GCTCCCATA-GGAGCAAT------------CGGAAAA-------------------------------TGAA--------------------------------------------------------------------AAA--------------A----------------ATTAT---------------------AACTTGGCTGTTTTTATACCC-------T------TG-------CAG--------------AGGGTATTATAATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGT--ATATATATTCTTGATCSizeHit CountTotal NormTotal
No Reads
droRho1
TCT---------------------------------------------------TTG-AGACCATTG-------CAAATAAAAATGTG---------------------------------------------------------------------------CTAAAATCAAATCGCAAATTCGATTGCCGGCTCAAAGTGATTTTCTATAAATCCACCTTAA---------------------------------------------------GT---------------------------------------------G--------------------------A-------------------------G----------------------------------TG-------------------------------TG-------------------------------------------------------------------GATTTA--------------T----------------TTT-----GTTAC------------CAAC--TATTATATTTATACCC-------T------TG-------CAG--------------AGGGTATTATAATTTTGGTCA-------AAAGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGT--ATATATATTCTTGATCSizeHit CountTotal NormTotal
No Reads
droBia1
AGGAACCGAAGCTT--CGAACGTATTCGATCTG---------ATTTGTATTAATTTGTACTCAATGG-------CAAATAAAATTCTT------GTAGCATTTTTTATACGTTTCTTAATGAA----------------T------A-AAAAAAATAAATATTTAAAA---AAA--TCCAGT--------------------------------------CTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTG-------------------------------TG-------------------------------------------------------------------TGTGAA--------------T----------------TTT-----TCA---------------TTTCTGTTTATTTTTATACCC-------T------TG-------CAG--------------AGGGTATAATAATTTCAGTCA-------GAAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCCATAAAGT--ATATATATTATTGATCSizeHit CountTotal NormTotal
No Reads
droTak1
GTT----------ACT--T----------------GGCAACTT----------T-------------------------------------------------------------------------------------T------A-TAATAAAAATT-------G--------------------------A----------------------------------------------AAATAA--AAA------TTG-----A--TTT----------------------GAAATAACTCTTG---AACTGTGGGGTACAT---------TGGTTTAAAA------T-------------------------TTATATATGTATAATCTACGCTTTA---------ATAC---CTTT-----------------CTGTTG----------------------------------------------------------------------AT--A--------------T----------------GCC-----A-T--A-----TGTCCCC----AACATATTTTTATACCC-------T------TG-------TAG--------------AGGGTATTATAATTTCAGTCA-------GATGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCACATAAAGT--ATATATATTCTTGATCSizeHit CountTotal NormTotal
No Reads
droEug1
TAGGACAAATT---------AAAA--------------CC-------------TTGG-TT---------------------------------------------------ACTCT-----------------------T----------------------------------------------------------------------------------------------AAGTGGAGTACA--------------------------------------------------------------------------------------------------GGA---AAGAAAA--------------------------------------A-TTAAAAACTTTGGCTTACACTTACAGTCTGACAC------------TG--------------------------------------------------------------TTAAGAACTTA--------------T----------------TTG-----GACA----------------CTATCGTGTTTTTATACCC-------G------TA-------AAG--TCA------AAAAGGGTATATTAGGTTCGTTGA-------AAAGTATGTAACAAGTAGAAGGAAGCGTTTCTGACCCTATAAAGT--ATATATATTCTTGATCSizeHit CountTotal NormTotal
No Reads
dm3
CTT---------------------------------------------------TTT-TTACTTTTA-------CACA--------------------------------------------------------------------------GAA--AATCTTTTAAA---AAATGTTTAGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------TATAAT--------------T-----------------CT------TT--CTATTC------TTGTTTCTCTA-TTTTATACTCGTTACT--------CG-------TACAAT--------AAAAGGGTATACTAGATTCTTTGA-------GAAGTATGTAACAGGCAGAAGGCACCGTTTCCGAATGTATAAAAA--ATATATATTCTTGATCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................TAGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------T......................................................................................................................................................................................................................21333.67101000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200034000000000000005300000000000000002000100000000000000000000000000015600000000000000000000600000038200000000000000008320
...................................................................................................................................................................................AGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------TA.....................................................................................................................................................................................................................21227.005400000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000200000000000000000000000000000000000000003100000000000000000000200001024300002000000000035050
.....................................................................................................................................................................................TTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------TATA...................................................................................................................................................................................................................2126.00120000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000001000000000000000010000000000000000000000000001000000000000000000000
.................................................................................................................................................................................TTAGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------T......................................................................................................................................................................................................................2236.00180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000030100000000000000000000000000000000000000000000000100000000000000000000000000015200000000000000002020
..................................................................................................................................................................................TAGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------TA.....................................................................................................................................................................................................................2224.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000010
.................................................................................................................................................................................TTAGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------.......................................................................................................................................................................................................................2133.67110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000012000000000000000000002000000000000000000000000000000000000000000000000030000000100000000000000000010
...................................................................................................................................................................................AGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------T......................................................................................................................................................................................................................2032.6780000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000002000000010000000000000000000000000000000000000000100000000000000000000000000001000000000000000000010
................................................................................................................................................................................TTTAGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------T...........................................................................................................................................................................................................................................................................................2132.3370000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000000000000000000000000000000000000000000002000001000000000000010
..........................................................................................................................................................................................................................................................................................................................................................................................T------------------------------ATG-------------------------------TG-------------------------------------------------------------------TATAAT--------------T-----------------CT------TT--C....................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................ATGTTTAGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------A.............................................................................................................................................................................................................................................................................................................................2122.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000001000000000000000000100
....................................................................................................................................................................................GTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------TA.....................................................................................................................................................................................................................2021.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGA-------GAAGTATGTAACAGGCAGA............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGCACCGT...................................2211.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTCTTTGA-------GAAG...........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.TT---------------------------------------------------TTT-TTACTTTTA-------CACA--------------------------------------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGA-------GAAGTATGTAACAGGCAGAAT..........................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................TTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------TATAT..................................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................T-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------TATAAT--------------T-----------------CT------.........................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------TA.....................................................................................................................................................................................................................19200.90180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000200000000000000000000010000000000000000000000000000000000101000000000000000000000000100000000000000000000000000000300000000000000000010010003100000000000000000001100
......................................................................................................................................................................................TTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------TA.....................................................................................................................................................................................................................18200.75150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200003000000000000000000000000000000000000000000000000000000000000210000000000000000000000002002100000000000000100100
...................................................................................................................................................................................AGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------TG.....................................................................................................................................................................................................................2130.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
..............................................................................................................................................................................TGTTTAGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------AT............................................................................................................................................................................................................................................................................................................................2130.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................TT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------TAT....................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................ATGTTTAGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------..............................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................AGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------TAC....................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
....................................................................................................................................................................................GTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------TATA...................................................................................................................................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------T......................................................................................................................................................................................................................18200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000300000000000100100000000000000000000000000000001000000000001000000000000000100000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TAGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------TATAA..................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------TAT....................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................TTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------TATAG..................................................................................................................................................................................................................21200.4590000000000000000000000000001000000000000000000000000000000000000000000000000000000000003000000000000000001000000000000000000000000000000000000000000000000000000000100000000000000000010000000000000000000000000000000000000000000000000000000000000010000000010000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TGTTTAGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------T...........................................................................................................................................................................................................................................................................................2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
................................................................................................................................................................................TTTAGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------.......................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................GTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------T......................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAAGGCACCGTTTCCC..............................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TGTTTAGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------............................................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...............................................................................................................................................................................GTTTAGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------............................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..................................................................................................................................................................................TAGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------TG.....................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................ATGTTTAGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TG.............................................................................................................................................................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................TGTTTAGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------A.............................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGCA.......................................2150.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................GTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------TAG....................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGA-------GAAGTATGTAACAG.................................................1850.2010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT--------AAAAGGGTATACTAGAT.............................................................................20130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------AAAAGGGTATACTAGATTCTTTGG-------...............................................................2570.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTATACTAGATTCTTTGA-------...............................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------AAAAGGGTATACTAGATTCTT.........................................................................2280.1310000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATACTAGATTCTTT........................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................AGTTTT-------------------------------------AT---------------------------------------------------GG---------------------------------------------T-----------------------------------------------------TGT------------------------------ATG-------------------------------TG-------------------------------------------------------------------TAG....................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGTAACAGGCAGAAG..........................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GAAAACATAACAT-----AATATATAATATTTC--------------------------------------------------------------------------A---------------TTTGTATTTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGT-------AGGTA--------ACACCTATTTTTGAA-------ATATTTATAAAATATCAT--------TTCAACT-------------------------------TA-------------------------------------------------------------------TGTGAG--------------T----------------TCTTTTTAGTTTC------------C----ATTTTATTTTTATA--------------------------------------------TAGTATACTAGATTCCT----------------TGTAACAGGCAGTAAGAAGCATTTCAGACCATATAAAGT--ATAAATATTCTTGATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................ATTTTTGAA-------ATATTT......................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
droSec2
ATT----------TCT--TATATATTTTATTTG---------------------------------------------------------------------------------------------GTTTAAATGGGTA-------------------------------------------------------------------------------------TTGAAGTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTAAAAGTTTTAATATAAAATTC-----------------CTGTCG----------------------------------------------------------------------AT--C--------------T----------------TTC-----GTTAC------------T----AGC--------------GTTACTCTTACTTACG-------TAGAGT--------AAAAGGGTATACTAGATTCGTTAA-------AAAGTATGTAACTGGCAGAAGGAAACGTTTCCAACCAAATAAGGT--ATATATATTCTTGATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
TTA----------GTT--C----------------A-----TT----------TTCG-ACCCCAT-A------------------------------------------------------------------------T----------------------------------------------------------------------------------------------AAATGAAGATAA--AGATA------------ATATTTC---GATACATTTTCT-----TAAAGTAATTCTTA---AACTAAAAATTACGT---------TA-----------------------------------------------------------------------TTTACG-------------------------------TT-------------------------------------------------------------------AATGAA--------------A----------------TCT------------------------CTTATTGAGTAATTATACCCGTTACT--------CG-------TAGAGT--------AAAAGGGTATACTAGATTCGTTGA-------AAAGTATGTAACAGGCTGAAGGAAGCGTTTCCGACCATATAAAGT--ATATATATTCTTGATCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------CG-------TAGAGT--------AAAAGGGTATACTAGATT............................................................................27200.8016000000000016
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGATTCGTTGA-------AAAGTATG.......................................................21200.45909000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGGAAGCGTTTCCGACCATA........................25130.15200200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTATACCCGTTACT--------CG-------TAGAG.......................................................................................................24200.15303000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAGGAAGCGTTTCCGACC...........................22150.13201100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCTGAAGGAAGCGTTTCCGAC............................24120.08100100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCTGAAGGAAGCGTTTCCGACC...........................28120.08100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCTGAAGGAAGCGTTTCCGACC...........................25120.08100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCTGAAGGAAGCGTTTCC...............................26140.07101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCTGAAGGAAGCGTT..................................26140.07101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATGTAACAGGCTGAAGG.........................................21140.07101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCTGAAGGAAGCGT...................................23150.07100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCTGAAGGAAGCGTTTCC...............................22150.07100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATGTAACAGGCTGAAGGA........................................21150.07101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCTGAAGGAAGCGTT..................................19160.06100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCTGAAGGAAGCG....................................21160.06101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGGAAGCGTTTCCGACC...........................21160.06101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAA--------------A----------------TCT------------------------CTTATTGAGTAATT.........................................................................................................................................22160.06101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGA-------AAAGTATGTAACAGGCT..............................................25160.06100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCTGAAGGAAGC.....................................22170.06101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCTGAAGGAAG......................................20170.06101000000000
TTA----------GTT--C----------------A-----TT----------TTCG-ACCCCAT-A------------------------------------------------------------------------T----------------------------------------------------------------------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24190.05101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAAGGAAGCGTTTCCGACCC..........................22200.05100100000000
droEre2
AAAAGTG------A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----ATAA--GAAGA------------ATATTTT---CT---------------------------------------------T-TCATTC-----------------------------------------------------------------------------------------ACAGTATTATTTTGGAAT------CGAATGTATAAGGTGATACTACATTTAATTATATTAAATGAAAATTACCTAACAAAGTAC--------------TTTTGA-------------------------------------------------------AGTGATGTTTTTATACTCGTTACT--------CG-------TAGAGT--------TA-AAGGTATACCAGATTCGTTGA-------CAAGTAGGTAACAGGCAGAAGGAAGCGTTTCCGACCATATAAAGTTTATATATATTCTTGATCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAGCGTTTCCG..............................24200.0510000010

Generated: 05/18/2015 at 03:56 AM