ID:

dwi_2314

 Coordinate:

scf2_1100000004852:495393-495543 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.6 -7.5

Flybase annnotation

CDS [Dwil\GK18782-cds]; exon [dwil_GLEANR_19461:2]; intron [Dwil\GK18782-in]; Antisense to intron [Dwil\GK18789-in]

No Repeatable elements found

mature
  1. scf2_1100000001999:1060-1088 -
  2. scf2_1100000003692:3203-3231 +
  3. dwi_2314  scf2_1100000004852:495501-495529 -
star
  1. scf2_1100000001999:1028-1048 -
  2. scf2_1100000003692:3243-3263 +
  3. dwi_2314  scf2_1100000004852:495469-495489 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCCCAAAAAAACACCGTGGAGCGACAATTCCCAGAGAAAAATTAATGCGGGAACAAACATCTGCCCCAGGGCAGGTAAGAAATGAGCGCGATCCAGACCAAATCGCCCATGAATGGCAGCAAGTTACGTACAAACGTGCGAACAAAAAACCGCCAGCGAAAAAGGATTTCCCTAGGCATCGGCCAGACGCTATTTTGTTAGCTAATAAAGCCAACTTGTCATATAGCGATATGCTAAAAATGGTAACGTCT
****************************************************************......((..((.....(((...(((((.........))))).))).....)).)).....****************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 M020
head
 V118
embryo
 V117
male body
................................................................CCCAGGGCAGGTAAGAAATGAGCGCGATC.............................................................................................................................................................. 29 0 3 1.00 3 0 3 0 0
..............................CCAGAGAAAAATTAATGCGGGAAC..................................................................................................................................................................................................... 24 0 5 0.40 2 2 0 0 0
..........................................................................................................................................................................CCTAGGCATCGGCCAGTGG.............................................................. 19 2 5 0.40 2 2 0 0 0
..................................AGAAAAATTAATGCGGGAACAAACATC.............................................................................................................................................................................................. 27 0 5 0.40 2 2 0 0 0
........................................................................................................GCCCATGAATGGCAGCAAGTT.............................................................................................................................. 21 0 3 0.33 1 1 0 0 0
....................................................................................AGAGCGATCCAGACCAAAGC................................................................................................................................................... 20 2 4 0.25 1 0 0 0 1
..........................................................................................ATCCAGACCAAATCGCCCATGA........................................................................................................................................... 22 0 4 0.25 1 1 0 0 0
..........................................................................................ATCCAGACCAAATCGCCCATGAAT......................................................................................................................................... 24 0 4 0.25 1 0 0 1 0
...........................................................................................TCCAGACCAAATCGCCCATGAATGGCAC.................................................................................................................................... 28 1 4 0.25 1 1 0 0 0
........................................................................................................................................................................TCCCTAGGCATCGGCCAGACGC............................................................. 22 0 4 0.25 1 1 0 0 0
.....................................................................................................................................................................ATTTCCCTAGGCATCGGCCAGACGC............................................................. 25 0 4 0.25 1 1 0 0 0
.............................................TGCGGGAACAAACATCTGCCCC........................................................................................................................................................................................ 22 0 5 0.20 1 1 0 0 0
..............................CCAGAGAAAAATTAATGCGGGAACAAA.................................................................................................................................................................................................. 27 0 5 0.20 1 1 0 0 0
...............................CAGAGAAAAATTAATGCGGGAACAAA.................................................................................................................................................................................................. 26 0 5 0.20 1 1 0 0 0
....................................AAAAATTAATTCGGGAACAAACATC.............................................................................................................................................................................................. 25 1 5 0.20 1 0 0 1 0
...............................................................................AAATGAGTGCGATGCGGACC........................................................................................................................................................ 20 3 7 0.14 1 0 1 0 0
..........................................................................................................................................................................CCTAGGCATCGGCCAGTGGG............................................................. 20 3 7 0.14 1 0 0 0 1
...........................................................................................................................................................................CTAGGCATCGGCCAGTGGG............................................................. 19 3 17 0.12 2 2 0 0 0

Anti-sense strand reads

GGGGTTTTTTTGTGGCACCTCGCTGTTAAGGGTCTCTTTTTAATTACGCCCTTGTTTGTAGACGGGGTCCCGTCCATTCTTTACTCGCGCTAGGTCTGGTTTAGCGGGTACTTACCGTCGTTCAATGCATGTTTGCACGCTTGTTTTTTGGCGGTCGCTTTTTCCTAAAGGGATCCGTAGCCGGTCTGCGATAAAACAATCGATTATTTCGGTTGAACAGTATATCGCTATACGATTTTTACCATTGCAGA
******************************************************************************************************************************......((..((.....(((...(((((.........))))).))).....)).)).....**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V119
head
 M020
head
 V117
male body
........................................................................................................................................................GGTCGCTTTTTCCTAAAGGGATCCGT......................................................................... 26 0 3 28.67 86 20 64 1 0 1
.............GGCACCTCGCTGTTAAGGGTCTCTTTT................................................................................................................................................................................................................... 27 0 2 4.00 8 8 0 0 0 0
.............GGCACCTCGCTGTTAAGGGTCTCTT..................................................................................................................................................................................................................... 25 0 2 3.00 6 5 1 0 0 0
........................................................................................GCTAGGTCTGGTTTAGCGGGTACTT.......................................................................................................................................... 25 0 4 2.75 11 0 11 0 0 0
.................................................................................................GGTTTAGCGGGTACTTACCGTCGT.................................................................................................................................. 24 0 3 2.00 6 4 2 0 0 0
....................CGCTGTTAAGGGTCTCTTTTTAAT............................................................................................................................................................................................................... 24 0 5 1.60 8 4 4 0 0 0
.............................................................................................................................................................................................................................ATATCGCTATACGATTTTTACCATT..... 25 0 7 1.57 11 10 1 0 0 0
...........GTGGCACCTCGCTGTTAAGGGTCTCTT..................................................................................................................................................................................................................... 27 0 2 1.50 3 1 2 0 0 0
.......................................................................................CGCTAGGTCTGGTTTAGCGGGTACTT.......................................................................................................................................... 26 0 4 1.50 6 2 4 0 0 0
............................................................................................GGTCTGGTTTAGCGGGTACTTACCGT..................................................................................................................................... 26 0 4 1.25 5 5 0 0 0 0
........................................................................................GCTAGGTCTGGTTTAGCGGGTACT........................................................................................................................................... 24 0 4 1.25 5 0 5 0 0 0
.......................................................................................CGCTAGGTCTGGTTTAGCGGGTACT........................................................................................................................................... 25 0 4 1.25 5 2 3 0 0 0
..................................................................................................................................................................................AGCCGGTCTGCGATAAAACAATCGAT............................................... 26 0 3 1.00 3 1 2 0 0 0
............TGGCACCTCGCTGTTAAGGGTCTCTTT.................................................................................................................................................................................................................... 27 0 2 1.00 2 2 0 0 0 0
...........................................................................ATTCTTTACTCGCGCTAGGTCTGGT....................................................................................................................................................... 25 0 3 1.00 3 3 0 0 0 0
...............................................................................................................................................................TTTTCCTAAAGGGATCCGTAGCCGGT.................................................................. 26 0 3 1.00 3 0 3 0 0 0
.........................................................................................................................................................GTCGCTTTTTCCTAAAGGGATCCGT......................................................................... 25 0 3 1.00 3 3 0 0 0 0
..........TGTGGCACCTCGCTGTTAAGGGTCTCTT..................................................................................................................................................................................................................... 28 0 2 1.00 2 1 1 0 0 0
....................................................................................................................................................................................................................TTGAACAGTATATCGCTATA................... 20 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................................................TATATCGCTATACGATTTTTACCATT..... 26 0 6 0.83 5 4 1 0 0 0
................................................................................................................................................................................GTAGCCGGTCTGCGATAAAACAAT................................................... 24 0 5 0.80 4 0 4 0 0 0
........................................................................................................................................................................AGGGATCCGTAGCCGGTCTGCGAT........................................................... 24 0 4 0.75 3 2 1 0 0 0
.................CCTCGCTGTTAAGGGTCTCTTTTTAAT............................................................................................................................................................................................................... 27 0 4 0.75 3 1 1 1 0 0
...........................................................................................AGGTCTGGTTTAGCGGGTACTTACCGT..................................................................................................................................... 27 0 4 0.75 3 2 1 0 0 0
.........................................................................................................................................................................................CTGCGATAAAACAATCGATTATTTCGGT...................................... 28 0 3 0.67 2 1 1 0 0 0
..............GCACCTCGCTGTTAAGGGTCTCTT..................................................................................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0
......................................................................................................................CGTTCAATGCATGTTTGCACGCTTGTTT......................................................................................................... 28 0 2 0.50 1 1 0 0 0 0
..............TCACCTCGCTGTTAAGGGTCTCTTTTT.................................................................................................................................................................................................................. 27 1 2 0.50 1 1 0 0 0 0
................ACCTCGCTGTTAAGGGTCTCTTTT................................................................................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0
.GGGTTTTTTTGTGGCACCTCGCTGT................................................................................................................................................................................................................................. 25 0 2 0.50 1 0 1 0 0 0
.......TTTTGTGGCACCTCGCTGTTAAGGG........................................................................................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................GTTCAATGCATGTTTGCACGCTTGT........................................................................................................... 25 0 4 0.50 2 2 0 0 0 0
...........GTGGCACCTCGCTGTTAAGGGTCTCTTT.................................................................................................................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0
.............GGCACCTCGCTGTTAAGGGTCTCTTT.................................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
...........................................................................................................................................................................................................................GTATATCGCTATACGATTTTTACCATT..... 27 0 6 0.50 3 3 0 0 0 0
........................................................................................................CGGGTACTTACCGTCGTTCAATGCAT......................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
GGGGTTTTTTTGTGGCACCTCGCTGT................................................................................................................................................................................................................................. 26 0 2 0.50 1 0 1 0 0 0
..................................................................................................................CCGTCGTTCAATGCATGTTTGC................................................................................................................... 22 0 2 0.50 1 0 0 0 1 0
............TGGCACCTCGCTGTTAAGGGTCTCTT..................................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
......................................................................................................................................................................AAAGGGATCCGTAGCCGGTCTGCGAT........................................................... 26 0 4 0.50 2 0 2 0 0 0
................ACCTCGCTGTTAAGGGTCTCTTTTT.................................................................................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0
..............................................CGCCCTTGTTTGTAGACGGGGTCCCGT.................................................................................................................................................................................. 27 0 4 0.50 2 2 0 0 0 0
.GGGTTTTTTTTTGGCACCTCGCTGT................................................................................................................................................................................................................................. 25 1 2 0.50 1 0 1 0 0 0
................ACCTCGCTGTTAAGGGTCTCTT..................................................................................................................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0
..................CTCGCTGTTAAGGGTCTCTTTTTAAT............................................................................................................................................................................................................... 26 0 4 0.50 2 1 1 0 0 0
..............GCACCTCGCTGTTAAGGGTCTCTTTT................................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
.GGGTTTTTTTGTGGCACCTCGCTGTT................................................................................................................................................................................................................................ 26 0 2 0.50 1 1 0 0 0 0
................................................................................TTACTCGCGCTAGGTCTGGTTTAG................................................................................................................................................... 24 0 4 0.50 2 1 1 0 0 0
.............................................................................................ATCTGGTTTAGCGGGTACTTACCGTC.................................................................................................................................... 26 1 3 0.33 1 1 0 0 0 0
........................................................................................................................................................GGTCGCTTTTTCCTAAAGGGATACGT......................................................................... 26 1 3 0.33 1 0 1 0 0 0
............................................................GACGGGGTCCCGTCCATTCTTTACT...................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0
.............................................................................TCTTTACTCGCGCTAGGTCTGG........................................................................................................................................................ 22 0 3 0.33 1 1 0 0 0 0
........................................................................................................................................................TGTCGCTTTTTCCTAAAGGGATCCGT......................................................................... 26 1 3 0.33 1 0 1 0 0 0
.....................................................................CCGTCCATTCTTTACTCGCGCTAGGT............................................................................................................................................................ 26 0 3 0.33 1 0 1 0 0 0
...............................................................................................................................................................TTTTCCTAAAGGGATCCGTAGCCTGT.................................................................. 26 1 3 0.33 1 0 1 0 0 0
.........................................................................CCATTCTTTACTCGCGCTAGGTCTGGT....................................................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0
........................................................................................................................................................GGTCGCTTTTTCCTAAAGGGATCCG.......................................................................... 25 0 3 0.33 1 0 1 0 0 0
........................................................................................................................................................GGTCGCTTTTTCCTAAAGTGATCCGT......................................................................... 26 1 3 0.33 1 0 1 0 0 0
............................................................................................................................................................GCTTTTTCCTAAAGGGATCCGTAGCCG.................................................................... 27 0 3 0.33 1 0 1 0 0 0
........................................................................................................................................................GGTCGCTTTTTCCTAAAGGGATC............................................................................ 23 0 3 0.33 1 1 0 0 0 0
...........................................................AGACGGGGTCCCGTCCATTCTTTACT...................................................................................................................................................................... 26 0 3 0.33 1 0 1 0 0 0
.........................................................................................................GGGTACTTACCGTCGTTCAAT............................................................................................................................. 21 0 3 0.33 1 1 0 0 0 0
.................................................................................................................................................................................................................................CGCTATACGATTTTTACCATTGCAGA 26 0 6 0.33 2 2 0 0 0 0
...........................................................................CTTCTTTACTCGCGCTAGGTCTGGTTT..................................................................................................................................................... 27 1 3 0.33 1 0 1 0 0 0
.............................................................................TCTTTACTCGCGCTAGGTCTGGTTT..................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0
........................................................................................................................................................GGTCGCTTTTTCCTAAAGGGATCTGT......................................................................... 26 1 3 0.33 1 0 1 0 0 0
............................................................................................................................................................................................................................TATATCGCTATACGATTTTTACCAT...... 25 0 6 0.33 2 2 0 0 0 0
....................................................................CCCGTCCATTCTTTACTCGCGCTAGGT............................................................................................................................................................ 27 0 3 0.33 1 0 1 0 0 0
..........................................................................................................................................................TCGCTTTTTCCTAAAGGGATCCGT......................................................................... 24 0 3 0.33 1 0 1 0 0 0
........................................................................................................................................................GGTAGCTTTTTCCTAAAGGGATCCGT......................................................................... 26 1 3 0.33 1 0 1 0 0 0
............................................................................TTCTTTACTCGCGCTAGGTCTGG........................................................................................................................................................ 23 0 3 0.33 1 1 0 0 0 0
....................................................................................................TTAGCGGGTACTTACCGTCGTTCAAT............................................................................................................................. 26 0 3 0.33 1 1 0 0 0 0
................................................................................................................................................................TTTCCTAAAGGGGTCCGTAGCCGGT.................................................................. 25 1 3 0.33 1 0 1 0 0 0
.....................................................................................................................................................................................CGGTCTGCGATAAAACAATCGATTATT........................................... 27 0 3 0.33 1 1 0 0 0 0
.............................................................................................................................................................................................................................ATATCGCTATACGATTTTTACCATTGCA.. 28 0 6 0.33 2 2 0 0 0 0
..............................................................................................................................................................TTTTTCCTAAAGGGATCCGTAGCCGGT.................................................................. 27 0 3 0.33 1 0 1 0 0 0
...........................................................................................................................................................................................GCGATAAAACAATCGATTATTTCGGT...................................... 26 0 3 0.33 1 0 1 0 0 0
...............................................................................................................................................................................................................................ATCGCTATACGATTTTTACCATTGCA.. 26 0 6 0.33 2 2 0 0 0 0
.....................................................................................................TAGCGGGTACTTACCGTCCTTCAAT............................................................................................................................. 25 1 3 0.33 1 1 0 0 0 0
.............................................................................TCTTTACTCGCGCTAGGTCTGGT....................................................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0
.....................................................................................................................................................................................CGGTCTGCGATAAAACAATCGATTAT............................................ 26 0 3 0.33 1 1 0 0 0 0
........................................................................................................................................................GGCCGCTTTTTCCTAAAGGGATCCGT......................................................................... 26 1 3 0.33 1 0 1 0 0 0
.............................................................................TCTTTACTCGCGCTAGGTCTGGTT...................................................................................................................................................... 24 0 3 0.33 1 1 0 0 0 0
.........................................................................................................................TCAATGCATGTTTGCACGCTTGTTTT........................................................................................................ 26 0 4 0.25 1 1 0 0 0 0
............................................................................................CTTCTGGTTTAGCGGATACTTACCGT..................................................................................................................................... 26 3 4 0.25 1 0 1 0 0 0
...............................................GCCCTTGTTTGTAGACGGGGTCCCGT.................................................................................................................................................................................. 26 0 4 0.25 1 1 0 0 0 0
.............................................................................................GTCTGGTTTAGCGGGTACTTACCG...................................................................................................................................... 24 0 4 0.25 1 1 0 0 0 0
........................................................................................GCTAGGTCTGGTTTAGCGGGTACTTAC........................................................................................................................................ 27 0 4 0.25 1 1 0 0 0 0
.....................................................................................................................................................................AAAAGGGATCCGTAGCCGGTCTGCGAT........................................................... 27 1 4 0.25 1 0 1 0 0 0
...........................................................................................AGGTCTGGTTTAGCGGGTACTTA......................................................................................................................................... 23 0 4 0.25 1 1 0 0 0 0
.................CCTCGCTGTTAAGGGTCTCTTTTTA................................................................................................................................................................................................................. 25 0 4 0.25 1 0 1 0 0 0
..........................................................................................TAGGTCTGGTTTAGCGGGTACTTACC....................................................................................................................................... 26 0 4 0.25 1 1 0 0 0 0
..................CTCGCTGTTAAGGGTCTCTT..................................................................................................................................................................................................................... 20 0 4 0.25 1 1 0 0 0 0
............................................................................................................................ATGCATGTTTGCACGCTTGTTTTTT...................................................................................................... 25 0 4 0.25 1 0 1 0 0 0
.............................................................................................GTCTGGTTTAGCGGGTACTTACCGT..................................................................................................................................... 25 0 4 0.25 1 1 0 0 0 0
.............................................................................................GTCTGGTTTAGCGGGTACTTACC....................................................................................................................................... 23 0 4 0.25 1 0 1 0 0 0
..........................................................................................TAGGTCTGGTTTAGCGGGTACT........................................................................................................................................... 22 0 4 0.25 1 0 1 0 0 0
.....................................................................................TGCGCTAGGTCTGGTTTAGCGGGTAC............................................................................................................................................ 26 1 4 0.25 1 0 1 0 0 0
.......................................................................................................................................................................AAGGGATCCGTAGCCGGTCTGCGAT........................................................... 25 0 4 0.25 1 0 1 0 0 0
........................................................................................GCTAGGTCTGGTTTAGCGGGTACTTG......................................................................................................................................... 26 1 4 0.25 1 1 0 0 0 0
........................................................................................GCTAGGTCTGGTTTCGCGGGTACTT.......................................................................................................................................... 25 1 4 0.25 1 0 1 0 0 0
.......................................................................................................................................................................ATGGGATCCGTAGCCGGTCTGCGAT........................................................... 25 1 4 0.25 1 1 0 0 0 0
..............................................................................................TCTGGTTTAGCGGGTACTTACCGT..................................................................................................................................... 24 0 4 0.25 1 1 0 0 0 0
.....................................................................................CGCGCTAGGTCTGGTTTAGCGGGTACTT.......................................................................................................................................... 28 0 4 0.25 1 1 0 0 0 0
...................................................................................................................................................................CCTAAAGGGATCCGTAGCCGGTCTGCGA............................................................ 28 0 4 0.25 1 1 0 0 0 0
.......................................................................................TGCTAGGTCTGGTTTAGCGGGTACT........................................................................................................................................... 25 1 4 0.25 1 0 1 0 0 0
...................TCGCTGTTAAGGGTCTCTTTTTAAT............................................................................................................................................................................................................... 25 0 4 0.25 1 1 0 0 0 0
..........................................................................................................................................................................GGATCCGTAGCCGGTCTGCGAT........................................................... 22 0 4 0.25 1 1 0 0 0 0
............................................................................................................................................................GCTTTTTCCTAAAGGGATCCGTGGCC..................................................................... 26 1 5 0.20 1 1 0 0 0 0
.............................................................................................................................................................................TCCGTAGCCGGTCTGCGATAAAACAAT................................................... 27 0 5 0.20 1 1 0 0 0 0
..............................................................................................................................................................................CCGTAGCCGGTCTGCGATAAAACAAT................................................... 26 0 5 0.20 1 1 0 0 0 0
....................CGCTGTTAAGGGTCTCTTTTTAA................................................................................................................................................................................................................ 23 0 5 0.20 1 1 0 0 0 0
....................CGCTGTTAAGGGTCTCTTGTTAAT............................................................................................................................................................................................................... 24 1 5 0.20 1 1 0 0 0 0
...........................................................................................................................................................CGCTTTTTCCTAAAGGGATCCGTGGC...................................................................... 26 1 5 0.20 1 1 0 0 0 0
...............................................................................................................................................................................CGTAGCCGGTCTGCGATAAAACAAT................................................... 25 0 5 0.20 1 1 0 0 0 0
..................................................................................................................................GTTTGCACGCTTGTTTTTTGG.................................................................................................... 21 0 5 0.20 1 1 0 0 0 0
..............................................................................................................................................................................CCGTAGCCGGTCTGCGATAAAACA..................................................... 24 0 5 0.20 1 1 0 0 0 0
.............................GGGTCTCTTTTTAATTACGCCCTTGTT................................................................................................................................................................................................... 27 0 5 0.20 1 1 0 0 0 0
............................................................................................................................................................................................................................TATATCCCTATACGATTTTTACCATT..... 26 1 6 0.17 1 1 0 0 0 0
............................................................................................................................................................................................................................TATATCGCTATACGATTTTTA.......... 21 0 6 0.17 1 1 0 0 0 0
..................................................................................................................................................................................................................................GCTATACGATTTTTACCATTGCA.. 23 0 6 0.17 1 0 1 0 0 0
...............................................................................................................................................................................................................................ATCGCTATACGATTTTTACCATTGCAGA 28 0 6 0.17 1 1 0 0 0 0
.................................................................................................................................................................................................................................CGCTATACGATTTTTACCATTGCAG. 25 0 6 0.17 1 1 0 0 0 0
...........................................................................................................................................................................................................................GTATATCGCTATACGATTTTTACCAT...... 26 0 6 0.17 1 1 0 0 0 0
.................................................................................TACTCGCGCTAGGTCTGGTT...................................................................................................................................................... 20 0 6 0.17 1 1 0 0 0 0
...............................................................................................................................................................................................................................ATCGCTATACGATTTTTACCATTGC... 25 0 7 0.14 1 1 0 0 0 0
.....................................................................................................................................................................................CGGTCTGCGATAAAACAATCG................................................. 21 0 7 0.14 1 1 0 0 0 0
....................................................................................CCGCGCTAGGTCTGGTACAG................................................................................................................................................... 20 3 7 0.14 1 0 0 0 1 0
.............................................................................................................................................................................................................................ATATCGGTATACGATTTTTACCAT...... 24 1 7 0.14 1 1 0 0 0 0
..............................................................................................................................................................................................................................TATCGCTATACGATTTTTACC........ 21 0 7 0.14 1 1 0 0 0 0
.............................................................................................................................................................................................................................ATATCGCTATACGATTTTTACCA....... 23 0 7 0.14 1 1 0 0 0 0
..............................................................................................................................................................................................................................TATCGCTATACGATTTTTACCAT...... 23 0 7 0.14 1 1 0 0 0 0
..............................................................................................................................................................................................................................TATCGCTATACGATTTTTACCATT..... 24 0 7 0.14 1 1 0 0 0 0
...................................................................................................................................................................................................................................CTATACGATTTTGACCATTT.... 20 2 10 0.10 1 0 0 1 0 0
...............................................................GAGGTCCCCTCCATGCTT.......................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0
....................................................................................TAGCGATAGGTCTGGTTAA.................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004852:495343-495593 - dwi_2314 CCCCAAAAAAACACCGTG--GAGCGACAATTCCCAGAGAAAAATTAAT-----------GC--GGGAACAAACATCTGCCCCAGGGCAGGTAAGAAATGAGCGCGATCC---AGACCAAATCGCCCAT--GAATGGCAGCAAGTTACGTACAAACGTGCG---AACAAAAAACCGC-CAGCGAAAAAGGATTTCCCTAGGCATCGGCCAGACGCTATTTTGTTAGCTAATAAAGCCAACTTGTCATATAGCGATATGCTAAAAATGGTAACGTCT
droVir3 scaffold_4719:2532-2600 + AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGACCGGATGCGATCCTGATCACGTGTACAGGGAGCATGCCATACGCAGATGTGCTCAAAATGGTGA-----
dp5 Unknown_group_2:67762-67842 + CC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGGCCCCGTCCGGATGTTATTATCATCGAGCCAAAAGGGGAAATGACTTACGCGGAGATCCTTAACCTCGTCACCCGC
droPer2 scaffold_558:6782-6928 + CGCGAAC------------------------------------------------------------------------------------------------------CTGAAACCCAACGGTCCCC--AACTGGCAGC-AGTTCGGTAGAAACCAGAA---AAAAACAGACCA-----------------CGAAAAAAACGCGACCAGACGCTGTAGTAATAGCGAGCGTAGGAAACATCACTTACGCGGAACTATTAAAATCGGTGAAA---
droAna3 scaffold_13339:179341-179368 - A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAGCGAGGTCCTGGCAATGGTCACT---
droBip1 scf7180000393980:22540-22611 + C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCCGACGTACTCATAATAACGGGGAACGCAGGATCCTCATACAGCGATGTCCTCAAACTGGTTACCCGA
droKik1 scf7180000300330:9745-9852 - AAAAAG--------------------------------------------------------------------------------------------------------------A------GGC-----------------------------------------------GAAA-GAAAAACGATGCTCCTCCTCGATCCCGGCCGGACGCAGCCATCATATCTGCGAAA---GGGAAGACGTACAGTGAAATCCTGGCCATGGTCACCCGA
droFic1 scf7180000448786:4005-4074 - T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCCAGATGCAATTCTGGTGAAATGCAAGGACAAAGCTGCATATGCTGACGTCCTAAAGGCGGTAC---AG
droEle1 scf7180000491028:2199645-2199769 - AAATGTC------------------------------------------------------------------------------------------------------CGGGCAGACGACGCAGC-----------------------------------------------GCAA-TGCGGATAAGCCTATCAGGAGAGTTCGCCCTGACGCCCTTGTTATAGCTGGGGCAGAAGGCCACTCATTCAGCGAAATCCTAAATATGGTAACGAGG
droTak1 scf7180000413342:4069-4306 - GCTCAGGAAAACGTCGGCACGGGCAATAG-GCCGAAGGAGAAAGCAATTCTCTCAAAACGCCGAGAGATAAGCACCTTCGCTAA-GCAGCC-CGATGGGAACCCTATCCCGAGCCG-AAGCCGCCCAGACGCGTGGCAGAAAGCC------------GAGCCTAGGAAGAGAG--C-CCGCAAAAA-------------TAGGCGACCGGAAGCAGTGGTCATCGAGGCCAAC---GGGAAATCCTACAGTGAGGTCCTGGCGATGGTCACCC--
droEre2 scaffold_4840:181571-181612 + AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCAAGACCTACAGCGAGGTCTTGGCTTTGGTCACGAGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CCCCAAAAAAACACCGTG--GAGCGACAATTCCCAGAGAAAAATTAAT-----------GC--GGGAACAAACATCTGCCCCAGGGCAGGTAAGAAATGAGCGCGATCC---AGACCAAATCGCCCAT--GAATGGCAGCAAGTTACGTACAAACGTGCG---AACAAAAAACCGC-CAGCGAAAAAGGATTTCCCTAGGCATCGGCCAGACGCTATTTTGTTAGCTAATAAAGCCAACTTGTCATATAGCGATATGCTAAAAATGGTAACGTCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................CCCAGGGCAGGTAAGAAATGAGCGCGATC.......................................................................................................................................................................2931.00330000
................................CCAGAGAAAAATTAAT-----------GC--GGGAAC..............................................................................................................................................................................................................2450.40202000
....................................AGAAAAATTAAT-----------GC--GGGAACAAACATC.......................................................................................................................................................................................................2750.40202000
..........................................................................................................................GCCCAT--GAATGGCAGCAAGTT..................................................................................................................................2130.33101000
.........................................................................................................ATCC---AGACCAAATCGCCCAT--GA...............................................................................................................................................2240.25101000
.........................................................................................................ATCC---AGACCAAATCGCCCAT--GAAT.............................................................................................................................................2440.25100010
..........................................................................................................TCC---AGACCAAATCGCCCAT--GAATGGCAC........................................................................................................................................2840.25101000
................................................................................................................................................................................................TCCCTAGGCATCGGCCAGACGC.............................................................2240.25101000
.............................................................................................................................................................................................ATTTCCCTAGGCATCGGCCAGACGC.............................................................2540.25101000
...............................................T-----------GC--GGGAACAAACATCTGCCCC.................................................................................................................................................................................................2250.20101000
................................CCAGAGAAAAATTAAT-----------GC--GGGAACAAA...........................................................................................................................................................................................................2750.20101000
.................................CAGAGAAAAATTAAT-----------GC--GGGAACAAA...........................................................................................................................................................................................................2650.20101000
droVir3
AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGACCGGATGCGATCCTGATCACGTGTACAGGGAGCATGCCATACGCAGATGTGCTCAAAATGGTGA-----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................CACGTGTACAGGGAGCATGCC...............................21113.0013002000000000000000000003102100000010003000000000000000000000000
...............................................................................................................................................................................................................................CACGTGTACAGGGAGCATGC................................2019.009000010000000100000001000102200000010000000000000000000000000000
...............................................................................................................................................................................................................................CACGTGTACAGGGAGCATGCCAT.............................2317.007000000000000000000000000114100000000000000000000000000000000000
...............................................................................................................................................................................................................................CACGTGTACAGGGAGCATGCCA..............................2216.006001000200000000000000000001000000000002000000000000000000000000
...............................................................................................................................................................................................................................CACGTGTACAGGGAGCATGCCATACGC.........................2715.005000000000000000000000000004100000000000000000000000000000000000
...............................................................................................................................................................................................................................CACGTGTACAGGGAGCATGCCATACG..........................2614.004000000000000000000000000011100000000001000000000000000000000000
...............................................................................................................................................................................................................................CACGTGTACAGGGAGCATGCCATAC...........................2514.004000000000000000000000000002200000000000000000000000000000000000
...............................................................................................................................................................................................................................CACGTGTACAGGGAGCATGCCATACGCA........................2813.003000000000000000000000000011000000000100000000000000000000000000
...............................................................................................................................................................................................................................CACGTGTACAGGGAGCATGCCATA............................2413.003000000000000000000000000001000000000002000000000000000000000000
...............................................................................................................................................................................................................................CACGTGTACAGGGAGCATGCCC..............................2211.001000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................................................................CACGTGTACAGGGAGCATGCCAATT...........................2511.001000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................CACGTGTACAGGGAGCATGCCATT............................2411.001000000000000000000000000010000000000000000000000000000000000000
...............................................................................................................................................................................................................................CACGTGTACAGGGAGCATT.................................1911.001000000100000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................CACGTGTACAGGGAGCATGCCAC.............................2311.001000000000000000000000000000000000000001000000000000000000000000
...............................................................................................................................................................................................................................CACGTGTACAGGGAGCATG.................................1911.001000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................CACGTGTACAGGGAGCATGCCATACA..........................2611.001000000100000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................CACGTGTACAGGGAGCATGCTT..............................2211.001000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................CACGTGTACAGGGAGCATGCCATG............................2411.001000010000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................CACGTGTACAGGGAGCATGCCATTA...........................2511.001000000000000000000000000010000000000000000000000000000000000000
.................................................................................................................................................................................................................................CGTGTACAGGGAGCATGCCATAC...........................2311.001000000000001000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................CATACGCAGATGTGCTCAAAATGGTGA-----27200.6513000010000000000000000000000800000000301000000000000000000000000
.....................................................................................................................................................................................................................................................TACGCAGATGTGCTCAAAATGGTC......24200.60120000000000000000000000000000000000000000000000000000000000000012
...................................................................................................................................................................................................................................................CATACGCAGATGTGCTCAAAATGGT.......25200.408000010000000000000000000000700000000000000000000000000000000000
...................................................................................................................................................................................................................................................CATACGCAGATGTGCTCAAAATG.........23200.357000000000000000000000000000500010000100000000000000000000000000
.............................................................................................................................................................................................................ACCGGATGCGATCCTGAT....................................................18200.153101000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................CATACGCAGATGTGCTCAAAATGGTG......26200.153000000000000000000000000000300000000000000000000000000000000000
...........................................................................................................................................................................................................CGACCGGATGCGATCCTGAT....................................................20200.102200000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................TACGCAGATGTGCTCAAAATGGT.......23200.102000000000000000000000000000000000000000000000000000000000000002
...................................................................................................................................................................................................................................................CATACGCAGATGTGCTCAAAA...........21200.102000000000000000000000000000200000000000000000000000000000000000
...................................................................................................................................................................................................................................................CATACGCAGATGTGCTCAAAATGT........24200.102000000000000000000000000000100000000100000000000000000000000000
AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGACCGGATGCGATCCTGAT....................................................22200.102000000000020000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................CCGGATGCGATCCTGATCACGTG..............................................23180.061000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................................................................................................................TACGCAGATGTGCTCAAAATGGTGA-----25200.051000000000000000000000000000000000000000000000000000000000000001
.....................................................................................................................................................................................................................................................TACGCAGATGTGCTCAAAATGGTG......24200.051000000000000000000000000000000000000000000000000000000000000001
..................................................................................................................................................................................................................................................CCATACGCAGATGTGCTCA..............19200.051000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................................................................ACCGGATGCGATCCTGAG....................................................18200.051100000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................CATACGCAGATGTGCTCAAAAT..........22200.051000010000000000000000000000000000000000000000000000000000000000
AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGACCGGATGCGATCCTGA.....................................................21200.051000000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................CATACGCAGATGTGCTCA..............18200.051000000000000000000000000000100000000000000000000000000000000000
dp5
CC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGGCCCCGTCCGGATGTTATTATCATCGAGCCAAAAGGGGAAATGACTTACGCGGAGATCCTTAACCTCGTCACCCGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................AGATCCTTAACCTCGTCACCCGC2356.803402910001300
............................................................................................................................................................................................................................................................AGATCCTTAACCTCGTCACCCG.2253.601801800000000
............................................................................................................................................................................................................................................................AGATCCTTAACCTCGTCACCC..2153.001501410000000
....................................................................................................................................................................................................TAGGCCCCGTCCGGATGTTATTATCAT....................................................2731.0030100000200
............................................................................................................................................................................................................................................................AGATCCTTAACCTCGTCACC...2051.0050400100000
...............................................................................................................................................................................................................................CGAGCCAAAAGGGGAAATGACT..............................2230.6720200000000
..............................................................................................................................................................................................................................TCGAGCCAAAAGGGGAAATGACT..............................2330.6720200000000
.............................................................................................................................................................................................................................................................GATCCTTAACCTCGTCACCCGC2250.6030300000000
...........................................................................................................................................................................................................................................................GAGATCCTTAACCTCGTCACCCGC2450.6030300000000
..............................................................................................................................................................................................................CCGGATGTTATTATCATCGAGCCA.............................................2420.5010100000000
.............................................................................................................................................................................................................................................................GATCCTTAACCTCGTCACCC..2050.4020200000000
............................................................................................................................................................................................................................CATCGAGCCAAAAGGGGAAATGACT..............................2530.3310100000000
.............................................................................................................................................................................................................................ATCGAGCCAAAAGGGGAAATGACT..............................2430.3310100000000
................................................................................................................................................................................................................................GAGCCAAAAGGGGAAATGACT..............................2130.3310100000000
.......................................................................................................................................................................................................................ATTATCATCGAGCCAAAAGGG.......................................2140.2510100000000
...................................................................................................................................................................................................................................................CTTACGCGGAGATCCTTAACCTC.........2340.2510100000000
.....................................................................................................................................................................................................................................................TACGCGGAGATCCTTAACCTCGTCA.....2540.2510100000000
.........................................................................................................................................................................................................................TATCATCGAGCCAAAAGGGGA.....................................2140.2510100000000
..........................................................................................................................................................................................................................ATCATCGAGCCAAAAGGGGA.....................................2040.2510100000000
...........................................................................................................................................................................................................................................................GAGATCCTTAACCTCGTCAC....2050.2010100000000
...........................................................................................................................................................................................................................................................GAGATCCTTAACCTCGTCACC...2150.2010100000000
..........................................................................................................................................................................................................................................................GGAGATCCTTAACCTCGTCACCCG.2450.2010100000000
................................................................................................................................................................................................................................................................CCTTAACCTCGTCACCCG.1850.2010100000000
............................................................................................................................................................................................................................................................AGATCCTTAACCTCGTCAC....1950.2010100000000
...........................................................................................................................................................................................................................................................GAGATCCTTAACCTCGTCACCCG.2350.2010000000100
............................................................................................................................................................................................................................................................AGATCCTTAACCTCGTCACCA..2150.2010100000000
droPer2
CGCGAAC------------------------------------------------------------------------------------------------------CTGAAACCCAACGGTCCCC--AACTGGCAGC-AGTTCGGTAGAAACCAGAA---AAAAACAGACCA-----------------CGAAAAAAACGCGACCAGACGCTGTAGTAATAGCGAGCGTAGGAAACATCACTTACGCGGAACTATTAAAATCGGTGAAA---SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAGCGAGGTCCTGGCAATGGTCACT---SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................ATAGCGAGGTCCTGGCAATGGT.......2211.001010000
droBip1
C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCCCGACGTACTCATAATAACGGGGAACGCAGGATCCTCATACAGCGATGTCCTCAAACTGGTTACCCGASizeHit CountTotal NormTotal
No Reads
droKik1
AAAAAG--------------------------------------------------------------------------------------------------------------A------GGC-----------------------------------------------GAAA-GAAAAACGATGCTCCTCCTCGATCCCGGCCGGACGCAGCCATCATATCTGCGAAA---GGGAAGACGTACAGTGAAATCCTGGCCATGGTCACCCGASizeHit CountTotal NormTotal
No Reads
droFic1
T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCCAGATGCAATTCTGGTGAAATGCAAGGACAAAGCTGCATATGCTGACGTCCTAAAGGCGGTAC---AGSizeHit CountTotal NormTotal
No Reads
droEle1
AAATGTC------------------------------------------------------------------------------------------------------CGGGCAGACGACGCAGC-----------------------------------------------GCAA-TGCGGATAAGCCTATCAGGAGAGTTCGCCCTGACGCCCTTGTTATAGCTGGGGCAGAAGGCCACTCATTCAGCGAAATCCTAAATATGGTAACGAGGSizeHit CountTotal NormTotal
No Reads
droTak1
GCTCAGGAAAACGTCGGCACGGGCAATAG-GCCGAAGGAGAAAGCAATTCTCTCAAAACGCCGAGAGATAAGCACCTTCGCTAA-GCAGCC-CGATGGGAACCCTATCCCGAGCCG-AAGCCGCCCAGACGCGTGGCAGAAAGCC------------GAGCCTAGGAAGAGAG--C-CCGCAAAAA-------------TAGGCGACCGGAAGCAGTGGTCATCGAGGCCAAC---GGGAAATCCTACAGTGAGGTCCTGGCGATGGTCACCC--SizeHit CountTotal NormTotal
No Reads
droEre2
AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCAAGACCTACAGCGAGGTCTTGGCTTTGGTCACGAGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................GCAAGACCTACAGCGAGGTCTTGGCTTTGGT.......31200.4590000009
.....................................................................................................................................................................................................................................................TACAGCGAGGTCTTGGCTTTGGTCACGA..2850.4022000000
......................................................................................................................................................................................................................................................ACAGCGAGGTCTTGGCTTTGGTCACGA..2760.1711000000
.......................................................................................................................................................................................................................................................CAGCGAGGTCTTGGCTTTGGTCACGAGG2860.1711000000
.....................................................................................................................................................................................................................................................TACAGCGAGGTCTTGGCTTTGGT.......23200.1533000000
.......................................................................................................................................................................................................................................................CAGCGAGGTCTTGGCTTTGGTCAC....2470.1411000000
AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCAAGACCTACAGCGAGGTCT.................25200.0511000000
....................................................................................................................................................................................................................................................CTACAGCGAGGTCTTGGCTTTGGT.......24200.0511000000
...................................................................................................................................................................................................................................................CCTACAGCGAGGTCTTGGCTTTGG........24200.0511000000
..................................................................................................................................................................................................................................................ACCTACAGCGAGGTCTTGGCTTTG.........24200.0511000000
.....................................................................................................................................................................................................................................................TACAGCGAGGTCTTGGCTTTGGTA......24200.0511000000
...................................................................................................................................................................................................................................................CCTACAGCGAGGTCTTGGCTTTGGT.......25200.0511000000
..........................................................................................................................................................................................................................................................CGAGGTCTTGGCTTTGGT.......18200.0511000000
.A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCAAGACCTACAGCGAGGTC..................23200.0511000000
.A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCAAGACCTACAGCGAGGTCT.................24200.0510100000
..................................................................................................................................................................................................................................................ACCTACAGCGAGGTCTTGGCTTTGG........25200.0511000000
.....................................................................................................................................................................................................................................................TACAGCGAGGTCTTGGCTT...........19200.0511000000

Generated: 05/18/2015 at 03:58 AM