ID:

dwi_231

 Coordinate:

scf2_1100000001250:2669-2957 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.4

Flybase annnotation

exon [dwil_GLEANR_10430:2]; CDS [Dwil\GK10417-cds]; CDS [Dwil\GK10417-cds]; exon [dwil_GLEANR_10430:1]; intron [Dwil\GK10417-in]

Repeatable elements

NameClassFamilyStrand
Gypsy-26_DWil-I-intLTRGypsy-
mature
  1. dwi_231  scf2_1100000001250:2804-2825 -
  2. scf2_1100000013354:1390-1411 +
  3. scf2_1100000001762:3680-3701 -
  4. scf2_1100000003367:1418-1439 -
  5. scf2_1100000013958:680-701 -
  6. scf2_1100000000951:1387-1408 +
  7. scf2_1100000014759:1123-1144 +
  8. scf2_1100000004694:2897-2918 -
  9. scf2_1100000004888:518978-518999 -
  10. scf2_1100000004904:9046-9067 -
  11. scf2_1100000004958:903995-904016 +
  12. scf2_1100000004961:1928247-1928268 +
  13. scf2_1100000004963:718947-718968 -
  14. scf2_1100000010025:1125-1146 +
  15. scf2_1100000007505:1384-1405 +
star
  1. dwi_231  scf2_1100000001250:2776-2796 -
  2. scf2_1100000013354:1419-1439 +
  3. scf2_1100000001467:4424-4444 +
  4. scf2_1100000001541:794-814 +
  5. scf2_1100000001762:3652-3672 -
  6. scf2_1100000003367:1390-1410 -
  7. scf2_1100000008728:567-587 +
  8. scf2_1100000013958:652-672 -
  9. scf2_1100000000951:1416-1436 +
  10. scf2_1100000014759:1152-1172 +
  11. scf2_1100000004888:518950-518970 -
  12. scf2_1100000004942:78379-78399 +
  13. scf2_1100000004904:9018-9038 -
  14. scf2_1100000004953:948943-948963 +
  15. scf2_1100000004958:904024-904044 +
  16. scf2_1100000004961:1928276-1928296 +
  17. scf2_1100000004963:718919-718939 -
  18. scf2_1100000007505:1413-1433 +

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGCGCGAATCGTACAGATGTACGAGGAGGCTACAAGAAATTGATACAAAGGTATCAAAATAGCGCGAATCATACAAATGTATGAGGGGTTACAAGAAATTGATACAAAGGTATCAGAATGGCGCGAATCGTACAAAGGTACGAGGAGGCTACAAGAAAATTGATACAAAGGTATCAAAAGAAAAATTAGCACGAATCGTACAAATGTACGAGAAGGACACAGGAAGATGATACAAATGTATCAAAGTAGTGGTACGATGGACGCAAATGTGTCTAGTGGCATATTCAATTAAATGTGTTACACATAAGAATAAACATATAATTTTTGTTTATATTTTAGGTATTGGAACTTTCTTTTGAAAATCATGTCGCAAATAAAACCGTTCCTTT
**************************************************************************************************************************************************************************************.............((((((....)))))).....................************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V119
head
 V117
male body
......................................................................................................................................................................................AAATTAGCACGAATCGTACAAA......................................................................................................................................................................................... 22 0 15 0.07 1 1 0 0 0
..................................................................................................................................................................................AGAAAAATTAGCACGAATCGTACA........................................................................................................................................................................................... 24 0 15 0.07 1 1 0 0 0
.............................................................................................................GTATGAGAATGGCGCGCACC.................................................................................................................................................................................................................................................................... 20 3 17 0.06 1 1 0 0 0
..........................................................................................................................................................................................TAGCACGAATCGTACAAATGTACGAGA................................................................................................................................................................................ 27 0 17 0.06 1 1 0 0 0
........................................................................................................................................................................................ATTAGCACGAATCGTACAAATGTACG................................................................................................................................................................................... 26 0 17 0.06 1 1 0 0 0
.......................................................................................................................................................................................AATTAGCACGAATCGTACAAATG....................................................................................................................................................................................... 23 0 17 0.06 1 1 0 0 0
............................................................................................................................................................................................................TGTACGAGAAGGACACAGGAAGATGA............................................................................................................................................................... 26 0 17 0.06 1 0 1 0 0
........................................................................................................................................................................................ATTAGCACGAATCGTACAAATG....................................................................................................................................................................................... 22 0 17 0.06 1 1 0 0 0
........................................................................................................................................................................................ATTAGCACGAATCGTACAAATGTA..................................................................................................................................................................................... 24 0 17 0.06 1 1 0 0 0
...................................................................................................................................................................................................................GAAGGACACAGGAAGATGATA............................................................................................................................................................. 21 0 18 0.06 1 0 0 1 0
.......................................................................................................................................................................................................................GACACAGGAAGATGATACAAATGT...................................................................................................................................................... 24 0 18 0.06 1 1 0 0 0
......................................................................................................................................................................................................................GGACACAGGAAGATGATACAAATG....................................................................................................................................................... 24 0 18 0.06 1 1 0 0 0
.........................................................................................................................................................................................................................CACAGGAAGATGATACAAATGTA..................................................................................................................................................... 23 0 18 0.06 1 1 0 0 0
...........................................................................................................................................................................................................................CAGGAAGATGATACAAATGTATCA.................................................................................................................................................. 24 0 19 0.05 1 1 0 0 0
...................................................................................................................................................GCTACGAGAAAGTTGGTAC............................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1
...................................................................................................................................................GCTACAAGAAAATTGATACAAAGGT......................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
...........................GGCTACAAGAAATTGATACAAAG................................................................................................................................................................................................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0
...................................................................................................................................................GCTACAAGAAAATTGATACAAAGG.......................................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

TCGCGCTTAGCATGTCTACATGCTCCTCCGATGTTCTTTAACTATGTTTCCATAGTTTTATCGCGCTTAGTATGTTTACATACTCCCCAATGTTCTTTAACTATGTTTCCATAGTCTTACCGCGCTTAGCATGTTTCCATGCTCCTCCGATGTTCTTTTAACTATGTTTCCATAGTTTTCTTTTTAATCGTGCTTAGCATGTTTACATGCTCTTCCTGTGTCCTTCTACTATGTTTACATAGTTTCATCACCATGCTACCTGCGTTTACACAGATCACCGTATAAGTTAATTTACACAATGTGTATTCTTATTTGTATATTAAAAACAAATATAAAATCCATAACCTTGAAAGAAAACTTTTAGTACAGCGTTTATTTTGGCAAGGAAA
*************************************************************************************************************************************************************.............((((((....)))))).....................************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body
....................................................................................................................................GTTTCCATGCTCCTCCGATGTTCTT........................................................................................................................................................................................................................................ 25 0 9 2.67 24 20 4 0
......................................................................................................................................TTCCATGCTCCTCCGATGTTCTT........................................................................................................................................................................................................................................ 23 0 9 0.56 5 5 0 0
....................................................................................................................................GTTTCCATGCTCCTCCGATGTTCT......................................................................................................................................................................................................................................... 24 0 9 0.56 5 3 2 0
..............................................................................................................................................................................................................................................................GCTACCTGCGTTTACACAGATCACCGT............................................................................................................ 27 0 15 0.53 8 7 1 0
.....................................................................................................................................................................................................................................................................GCGTTTACACAGATCACCGTATAAGT...................................................................................................... 26 0 18 0.39 7 6 1 0
....................................................................................................................................................................................................................................................................TGCGTTTACACAGATCACCGTATAAGT...................................................................................................... 27 0 18 0.39 7 1 6 0
................................................................................................................................................................................................................GCTCTTCCTGTGTCCTTCTACTATGT........................................................................................................................................................... 26 0 17 0.35 6 5 1 0
....................................................................................................................................GTTTCCATGCTCCTCCGATGTTCTTT....................................................................................................................................................................................................................................... 26 0 9 0.33 3 3 0 0
......................................................................................................................................TTCCATGCTCCTCCGATGTTCTTT....................................................................................................................................................................................................................................... 24 0 9 0.33 3 3 0 0
.....................................................................................................................................................................................................................TCCTGTGTCCTTCTACTATGTTTACAT..................................................................................................................................................... 27 0 18 0.28 5 3 2 0
..........................................TATGTTTCCATAGTTTTATCGCGCT.................................................................................................................................................................................................................................................................................................................................. 25 0 20 0.25 5 1 4 0
........................................................................................................................................................................................................GTTTACATGCTCTTCCTGTGTCCTT.................................................................................................................................................................... 25 0 17 0.24 4 4 0 0
...........................CCGATGTTCTTTAACTATGTTTCCAT................................................................................................................................................................................................................................................................................................................................................ 26 0 20 0.20 4 3 1 0
............................................................................................................................................GCTCCTCCGATGTTCTTTTAACTA................................................................................................................................................................................................................................. 24 0 11 0.18 2 2 0 0
......................................................................................................................................................................................................................CCTGTGTCCTTCTACTATGTTTACAT..................................................................................................................................................... 26 0 18 0.17 3 3 0 0
...................................................................................................................................................................................................................................................................CTGCGTTTACACAGATCACCGTATAAGT...................................................................................................... 28 0 18 0.17 3 0 3 0
........................................................................................................................................................................................................GTTTACATGCTCTTCCTGTGTCCT..................................................................................................................................................................... 24 0 18 0.17 3 3 0 0
..................................................................................................................................................CCGATGTTCTTTTAACTATGTTTCCAT........................................................................................................................................................................................................................ 27 0 20 0.15 3 3 0 0
..........................................................................................................................................................................................................TTACATGCTCTTCCTGTGTCCTTCT.................................................................................................................................................................. 25 0 17 0.12 2 1 1 0
...........................................................................................................................................................................................................TACATGCTCTTCCTGTGTCCTTCTAC................................................................................................................................................................ 26 0 17 0.12 2 2 0 0
............................................................................................................................................................................................CGTGCTTAGCATGTTTACATGCTCTT............................................................................................................................................................................... 26 0 17 0.12 2 2 0 0
......................................................................................................................................TTCCATGCTCCTCCGATGTTCTTTTAA.................................................................................................................................................................................................................................... 27 0 9 0.11 1 1 0 0
...................................................................................................................................TGTTTCCATGCTCCTCCGATGTTCT......................................................................................................................................................................................................................................... 25 0 9 0.11 1 1 0 0
.......................................................................................................................................TCCATGCTCCTCCGATGTTCTT........................................................................................................................................................................................................................................ 22 0 9 0.11 1 1 0 0
.....................................................................................................................................TTTCCATGCTCCTCCGATGTTCTT........................................................................................................................................................................................................................................ 24 0 9 0.11 1 0 1 0
.....................................................................................................................................TTTCCATGCTCCTCCGATGTTCTTT....................................................................................................................................................................................................................................... 25 0 9 0.11 1 1 0 0
.......................................................................................................................................TCCATGCTCCTCCGATGTTCTTT....................................................................................................................................................................................................................................... 23 0 9 0.11 1 1 0 0
....................................................................................................................................................................................................................................................................TGCGTTTACACAGATCACCGTATAAGTT..................................................................................................... 28 0 18 0.11 2 0 2 0
..........................................TATGTTTCCATAGTTTTATCGCGCTT................................................................................................................................................................................................................................................................................................................................. 26 0 20 0.10 2 2 0 0
.............................................GTTTCCATAGTTTTATCGCGCTTAGT.............................................................................................................................................................................................................................................................................................................................. 26 0 20 0.10 2 1 1 0
................................................................................................................................................................................................................................................................................................................................TAAAAACAAATATAAAATCCATAACCT.......................................... 27 0 11 0.09 1 1 0 0
............................................................................................................................................GCTCCTCCGATGTTCTTTTAACTAT................................................................................................................................................................................................................................ 25 0 11 0.09 1 1 0 0
...........................................................................................................................................TGCTCCTCCGATGTTCTTTTAACTAT................................................................................................................................................................................................................................ 26 0 11 0.09 1 0 0 1
............................................................................................................................................GCTCCTCCGATGTTCTTTTAACTATGT.............................................................................................................................................................................................................................. 27 0 11 0.09 1 1 0 0
...............................................................................................................................AGCATGTTTCCATGCTCCTCCGATGT............................................................................................................................................................................................................................................ 26 0 12 0.08 1 1 0 0
.....................................................................................................TATGTTTCCATAGTCTTACCGCGCT....................................................................................................................................................................................................................................................................... 25 0 14 0.07 1 0 1 0
.......................................................................................................................................................................TTCCATAGTTTTCTTTTTAATCGTGCT................................................................................................................................................................................................... 27 0 14 0.07 1 1 0 0
.....................................TTAACTATGTTTCCATAGTTTTATCGC..................................................................................................................................................................................................................................................................................................................................... 27 0 14 0.07 1 1 0 0
..............................................................................................................................................................................................................................................................GCTACCTGCGTTTACACAGATCACCG............................................................................................................. 26 0 15 0.07 1 1 0 0
..............................................................................................................................................................................................................................................................GCTACCTGCGTTTACACAGATCACCGTAT.......................................................................................................... 29 0 15 0.07 1 1 0 0
...............................................................................................................................................................................................................................................................CTACCTGCGTTTATACAGATCACCGT............................................................................................................ 26 1 15 0.07 1 1 0 0
.....................................................................................................................................................................GTTTCCATAGTTTTCTTTTTAAT......................................................................................................................................................................................................... 23 0 16 0.06 1 1 0 0
..........................................................................................................................................................................................................TTACATGCTCTTCCTGTGTCCTT.................................................................................................................................................................... 23 0 17 0.06 1 1 0 0
..................................................................................................................................................................................................TAGCATGTTTACATGCTCTTCCTGTGTCC...................................................................................................................................................................... 29 0 17 0.06 1 0 1 0
...............................................................................................................................................................................................................TGCTCTTCCTGTGTCCTTCTACTAT............................................................................................................................................................. 25 0 17 0.06 1 1 0 0
........................................................................................................................................................................................................GTTTACATGCTCTTCCTGTGTCCTTC................................................................................................................................................................... 26 0 17 0.06 1 1 0 0
...........................................................................................................................................................................................................TACATGCTCTTCCTGTGTCCTTCTA................................................................................................................................................................. 25 0 17 0.06 1 1 0 0
...............................................................................................................................................................................................................TGCTCTTCCTGTGTCCTTCTACTA.............................................................................................................................................................. 24 0 17 0.06 1 1 0 0
.............................................................................................................................................................................................................CATGCTCTTCCTGTGTCCTTCTACTAT............................................................................................................................................................. 27 0 17 0.06 1 1 0 0
................................................................................................................................................................................................................GCTCTTCCTGTGTCCTTCTACTAT............................................................................................................................................................. 24 0 17 0.06 1 1 0 0
..............................................................................................................................................................................................................TTGCTCTTCCTGTGTCCTTCTACTATG............................................................................................................................................................ 27 1 17 0.06 1 1 0 0
.................................................................................................................................................................................................TTAGCATGTTTACATGCTCTTCCTGTGT........................................................................................................................................................................ 28 0 17 0.06 1 1 0 0
........................................................................................................................................................................................................GTTTACATGCTCTTCCTGTGTCCTTCT.................................................................................................................................................................. 27 0 17 0.06 1 1 0 0
.........................................................................................................................................................................................................TTTACATGCTCTTCCTGTGTCCTT.................................................................................................................................................................... 24 0 17 0.06 1 1 0 0
..........................................................................................................................................................................................................TTACATGCTCTTCCTGTGTCCTTCTACT............................................................................................................................................................... 28 0 17 0.06 1 1 0 0
......................................................................................................................................................................................................................................................................CGTTTACACAGATCACCGTATAAGTT..................................................................................................... 26 0 18 0.06 1 0 1 0
...................................................................................................................................................................................................................................................................CTGCGTTTACACAGATCACCGTATA......................................................................................................... 25 0 18 0.06 1 0 1 0
........................................................................................................................................................................................................................TGTGTCCTTCTACTATGTTTACAT..................................................................................................................................................... 24 0 18 0.06 1 1 0 0
.............................................................................................................................................................................................GTGCTTAGCATGTTTACATGCTCT................................................................................................................................................................................ 24 0 18 0.06 1 1 0 0
...............................................................................................................................................................................................GCTTAGCATGTTTACATGCTCTTCCT............................................................................................................................................................................ 26 0 18 0.06 1 1 0 0
...................................................................................................................................................................................................AGCATGTTTACATGCTCTTCCTGT.......................................................................................................................................................................... 24 0 18 0.06 1 1 0 0
.....................................................................................................................................................................................................................................................................GCGTTTACACAGATCACCGTATAAGTC..................................................................................................... 27 1 18 0.06 1 1 0 0
................................................................................................................................................................................................................................................................TACCTGCGTTTACACAGATCACCGT............................................................................................................ 25 0 18 0.06 1 1 0 0
.............................................................................................................................................................TTAACTATGTTTCCATAGTTTTCTTTTT............................................................................................................................................................................................................ 28 0 18 0.06 1 1 0 0
...................................................................................................................................................................................................................................................................CTGCGTTTACACAGATCACCGT............................................................................................................ 22 0 18 0.06 1 0 1 0
..........................................................................................................................................................................................................................................................................TACACAGATCACCGTATAAGT...................................................................................................... 21 0 18 0.06 1 1 0 0
.........................................................................................................................................................................................................................................................................TCACACAGATCACCGTATAAGTTAA................................................................................................... 25 1 18 0.06 1 1 0 0
.........................................................................................................................................................................................................................GTGTCCTTCTACTATGTTTACATAGT.................................................................................................................................................. 26 0 18 0.06 1 1 0 0
..........................................................................................................................................................................................................................TGTCCTTCTACTATGTTTACATAGT.................................................................................................................................................. 25 0 19 0.05 1 1 0 0
.............................................GTTTCCATAGTTTTATCGCGCTTAG............................................................................................................................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0
.................................................................................................................................................TCCGATGTTCTTTTAACTATGT.............................................................................................................................................................................................................................. 22 0 20 0.05 1 1 0 0
........................................................TTTATCGCGCTTAGTATGTTTACAT.................................................................................................................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0
......................CTCCTCCGATGTTCTTTAACTATGT...................................................................................................................................................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0
...................................................................................................................................................CGATGTTCTTTTAACTATGTTTCCAT........................................................................................................................................................................................................................ 26 0 20 0.05 1 1 0 0
.............................................................................................................................................CTCCTCCGATGTTCTTTTAACTATGT.............................................................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0
..........................TCCGATGTTCTTTAACTATGTTTCCA................................................................................................................................................................................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0
..........................TCCGAAGTTCTTTAACTATGTTTCCCT................................................................................................................................................................................................................................................................................................................................................ 27 2 20 0.05 1 0 1 0
..........................................TATGCTTCCATAGTTTTATCGCGCTT................................................................................................................................................................................................................................................................................................................................. 26 1 20 0.05 1 0 1 0
.......................TCCTCCGATGTTCTTTAACTATGTT..................................................................................................................................................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0
....................................................................................................................................................GATGTTCTTTTAACTATGTTTCCAT........................................................................................................................................................................................................................ 25 0 20 0.05 1 1 0 0
..........................................TATGTTTCCATATTTTTATCGCGCTT................................................................................................................................................................................................................................................................................................................................. 26 1 20 0.05 1 0 1 0
..............................................................................................................................................TCCTCCGATGTTCTTTTAACTATG............................................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0
...............................................TTCCATAGTTTTATCGCGCTTAGTATG........................................................................................................................................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0
...............................................TTCCATAGTTTTATCGCGCTTAGTATGTT......................................................................................................................................................................................................................................................................................................................... 29 0 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000001250:2619-3007 - dwi_231 AGCGCGA----AT--CGTACAGATGTACGAGGAGGCTACAAGAAATTGATACAAAGGTATCAAAATAGCGCGAATCATACAAATGTATGAGGGGTTACAAGAAATTGATACAAAGGTATCAGAATGGCGCGAATCGTACAAAGGTACGAGGAGGCTACAAGAAAATTGATACAAA---------------------------------------------------------------------------------GGTATCAAAAGAAAAATTAGCACGAATCGTACAAATGTACGAGAAGGACACAGGAAGATGATACAAATGTATC----AAAGT---------------------------------------------------------------------AGTGGTACGATGGACGCAAATGTGT-CTAG-----TG------------------------------------GCATATTCAATTAAATGTGTTACACATAAGAAT-AAACATATAATTTTTGTTTAT----ATT--------TTAGGTATTGGAAC-------------TTTCTTTTGAAAA---------TCAT--GTCGC----------------------AAATAAAACCGTTCCTTT
droMoj3 scaffold_4434:12223-12274 + AAGAGAA----TTAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------GAA---------------------------------------------------------------------------------GGTAACAAAAGAAAATTAA----------------------------------------------------------------------------------------------------------------------------------------------TC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAAGTAAAAGT
droAna3 scaffold_12947:929626-929706 + ATGTATT----GTAATAAAAACAAAC-------------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTTT----TTCTG----TTG-----------------------------------------------------------------TCCGGTTTCAGGATGGTTGAAAATTGTTTCAAACCGTTCCTAT
droBip1 scf7180000395276:4750-4973 + AAGCTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA--------GGAGAGAGAAAAACAAAAAACATATGTATGTAC---------------------------------------------------------------------------------------------------ATACATACGTTTAGTA------------------------AAGTAGGTACACAGTATAGGATACGAACTAACCGAAGTCAGTGACAGAATTAAGTGAAGTGAAACTTAG-----TT-------------------------------------------TCATTAAATAAATTACATATATA---------TATATAT----ATATA----TATAGAAATAT--------TCAAATTT-TTACAGATG--------------A-ACGCGGA----ATT--AC----------------------CCATTAAACCATTCTTGT
droKik1 scf7180000298510:23371-23604 - GTAGAGA----AA--GACACGCACAC-------------------------------------------ACTAAGCTGACAAATGTCAGAG---------------------------------------------------------------------------------ACAGTAAAA-------------------------------------------------------------------TAAAGGAAAGGAAAACTAAAAT------------------------AAGGGCAGTAGCCAGAAGGCAGATACATGTGTATA----AATGTTGATCAATGTTGGCCAACGTATGTACATATAAATATATGC-----ATGTTAAAGGAACTGATTAAG-------------------------------------------------------------TGAAAGAAATTCAA----------------------------------------------------------------------------------AATTTATTTCAGATG--------------A-ACGCGGA----GTT--AT----------------------TCATTAAACCATTCTTGT
droFic1 scf7180000453693:17445-17564 - TGAGATG----TT--C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAT--------AAAGAGTCTATTAAATAAAAAAAAAAATAAGAAATTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAATGGCCA---------TCTAATT-------------TGAA-------------------T--------------TATCTTTCAGGTTATA--------------------CTAAACATGACCG------AGTTAAAACAATTCCTGT
droEle1 scf7180000490293:14328-14385 - ATTTATG----T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTA----ATT--------TCAGGA---------------------------------------------------------ATAATTATGACGGAATAATTATGACGGAAATTTCTAT
droRho1 scf7180000772740:10409-10488 - ATAAAAA----TTAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------AAA---------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTT--TTTA----CTT--------TCAGAT---------------------------------A-----------------TGAAATAACAAAATGTGCGAAAAAATTATTAAACCGTTCCTTT
droBia1 scf7180000299546:31236-31336 - ACATACG----TA--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAC---------------------------------------------------------------------------------------------------A----TACGTTTAGCA------------------------AATTATGTAT-----GTATGATACGAACTGACTGAAG-------------------------------------TT-------------------------------------------TCATTAAATAAATTACAT--------------------------------------------------------------------------------------------------ATT--AC----------------------CCATTGAACCATTCTTGT
droTak1 scf7180000414005:4029-4183 - GGGGATA----AA--ACAACATGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------AATAA---------CAACGA--------------------------GCTCGTGTGGAT------------------------------------------------------------------------------------------------------------------------------------------------ATAATGG------------------------------------GGAGCTGAATAAAAAT------------------------------------------------AAACAAGGCAAATTGACA---------TCTAATT----TACTG----TTTTGGTGTTT--------TTGAATTT-CAGTAATTT--------------A-TC--G--------------------AAATGGCAG------AGCTGAAACCATTTCTTT
droEug1 scf7180000409561:103176-103428 + ACAAAGG----TCAGAG-----------------------------------------------------------------------------------------------------------------------------------------------------------ACAGTAAGACTGACAACATTTAGTAGAGAGAGAGAGAGAAAAAACGTACGTATGTAC---------------------------------------------------------------------------------------------------ATGCATACGTTTAGTA------------------------AAGTATGTACACAGAATAGGATACGAACTGACTGAAGTCAGTGACAGAATTAAGTAAAGCGAAA-TCAG-----TT-------------------------------------------TCACCAAATAAATTATATATATA---------TATATAT----ACATATGTATATAGATTTAT--------TCAAATTTATTACAGATT--------------A-ACGCGGA----ATT--AC----------------------CTATTAAACCATTCTT--
dm3 chrU:234819-234928 + TCAACAAAATGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTCTTAAAAGGGAAAAATATAATTATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA-------------------T--------------TTTCTTTTGAATT---------TTAA--AGTGCAAATGAAACATGGCTGAGCACAATTTGAAACCATTCTTAT
droSim2 node_24996:2866-2931 + TAATCTT----TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------TT--------TCAGACAT----------AACGGTTGTTT-----------------G--------------------TGATGGCGGAGAGCGTAATTAAACCATTCCTTT
droSec2 scaffold_1293:328-546 - CAAGGCA----AT--C-------------------------------AATAAAAAGGAAAA---------------------------------------------------------------------------------------------------------------AA----AACTTAACATTATTCAAAAGAGTGG--------------------------GCGTGTCAAAAA------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCG------------------------------------GCAAATCAATAAAAATTTGCAAGATTAATAAAATTATGAAAAAATATCCGAAAATTATTCAAGTA------TTAGTCGT--GAATAATACATAATATTCTA--TTTG----ATT--------TCTGGG--------------GTATTAATT-----------------C--------------------CGATAGCAGATAATGCAATAAAGCCATTTCTCT
droYak3 v2_chrUn_1164:781-882 + AAATGTA----AT--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATA---------TATATAT----ATATATATATATA-------------------T--------------TCTCTTTTGAATT---------TTAG--TTTGCAAACAAAACATGGCTAAGCACAATTTGAAACCATTCTTAT
droEre2 scaffold_4929:21503817-21503832 + AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACCTTTTCAGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AGCGCGA----AT--CGTACAGATGTACGAGGAGGCTACAAGAAATTGATACAAAGGTATCAAAATAGCGCGAATCATACAAATGTATGAGGGGTTACAAGAAATTGATACAAAGGTATCAGAATGGCGCGAATCGTACAAAGGTACGAGGAGGCTACAAGAAAATTGATACAAA---------------------------------------------------------------------------------GGTATCAAAAGAAAAATTAGCACGAATCGTACAAATGTACGAGAAGGACACAGGAAGATGATACAAATGTATC----AAAGT---------------------------------------------------------------------AGTGGTACGATGGACGCAAATGTGT-CTAG-----TG------------------------------------GCATATTCAATTAAATGTGTTACACATAAGAAT-AAACATATAATTTTTGTTTAT----ATT--------TTAGGTATTGGAAC-------------TTTCTTTTGAAAA---------TCAT--GTCGC----------------------AAATAAAACCGTTCCTTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................AAATTAGCACGAATCGTACAAA.......................................................................................................................................................................................................................................................................................................................................................................22150.07101000
.........................................................................................................................................................................................................................................................................AGAAAAATTAGCACGAATCGTACA.........................................................................................................................................................................................................................................................................................................................................................................24150.07101000
.................................................................................................................................................................................................................................................................................TAGCACGAATCGTACAAATGTACGAGA..............................................................................................................................................................................................................................................................................................................................................................27170.06101000
...............................................................................................................................................................................................................................................................................ATTAGCACGAATCGTACAAATGTACG.................................................................................................................................................................................................................................................................................................................................................................26170.06101000
..............................................................................................................................................................................................................................................................................AATTAGCACGAATCGTACAAATG.....................................................................................................................................................................................................................................................................................................................................................................23170.06101000
...................................................................................................................................................................................................................................................................................................TGTACGAGAAGGACACAGGAAGATGA.............................................................................................................................................................................................................................................................................................................................................26170.06100010
...............................................................................................................................................................................................................................................................................ATTAGCACGAATCGTACAAATG.....................................................................................................................................................................................................................................................................................................................................................................22170.06101000
...............................................................................................................................................................................................................................................................................ATTAGCACGAATCGTACAAATGTA...................................................................................................................................................................................................................................................................................................................................................................24170.06101000
..........................................................................................................................................................................................................................................................................................................GAAGGACACAGGAAGATGATA...........................................................................................................................................................................................................................................................................................................................................21180.06100001
..............................................................................................................................................................................................................................................................................................................GACACAGGAAGATGATACAAATGT....................................................................................................................................................................................................................................................................................................................................24180.06101000
.............................................................................................................................................................................................................................................................................................................GGACACAGGAAGATGATACAAATG.....................................................................................................................................................................................................................................................................................................................................24180.06101000
................................................................................................................................................................................................................................................................................................................CACAGGAAGATGATACAAATGTA...................................................................................................................................................................................................................................................................................................................................23180.06101000
..................................................................................................................................................................................................................................................................................................................CAGGAAGATGATACAAATGTATC----A............................................................................................................................................................................................................................................................................................................................24190.05101000
.........................................................................................................................................................GCTACAAGAAAATTGATACAAA---------------------------------------------------------------------------------GGT.......................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
.................................GGCTACAAGAAATTGATACAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100010
.........................................................................................................................................................GCTACAAGAAAATTGATACAAA---------------------------------------------------------------------------------GG........................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
droMoj3
AAGAGAA----TTAAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------GAA---------------------------------------------------------------------------------GGTAACAAAAGAAAATTAA----------------------------------------------------------------------------------------------------------------------------------------------TC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAAAGTAAAAGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droAna3
ATGTATT----GTAATAAAAACAAAC-------------------------------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTTTT----TTCTG----TTG-----------------------------------------------------------------TCCGGTTTCAGGATGGTTGAAAATTGTTTCAAACCGTTCCTATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AAGCTGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAA--------GGAGAGAGAAAAACAAAAAACATATGTATGTAC---------------------------------------------------------------------------------------------------ATACATACGTTTAGTA------------------------AAGTAGGTACACAGTATAGGATACGAACTAACCGAAGTCAGTGACAGAATTAAGTGAAGTGAAACTTAG-----TT-------------------------------------------TCATTAAATAAATTACATATATA---------TATATAT----ATATA----TATAGAAATAT--------TCAAATTT-TTACAGATG--------------A-ACGCGGA----ATT--AC----------------------CCATTAAACCATTCTTGTSizeHit CountTotal NormTotal
No Reads
droKik1
GTAGAGA----AA--GACACGCACAC-------------------------------------------ACTAAGCTGACAAATGTCAGAG---------------------------------------------------------------------------------ACAGTAAAA-------------------------------------------------------------------TAAAGGAAAGGAAAACTAAAAT------------------------AAGGGCAGTAGCCAGAAGGCAGATACATGTGTATA----AATGTTGATCAATGTTGGCCAACGTATGTACATATAAATATATGC-----ATGTTAAAGGAACTGATTAAG-------------------------------------------------------------TGAAAGAAATTCAA----------------------------------------------------------------------------------AATTTATTTCAGATG--------------A-ACGCGGA----GTT--AT----------------------TCATTAAACCATTCTTGTSizeHit CountTotal NormTotal
No Reads
droFic1
TGAGATG----TT--C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAT--------AAAGAGTCTATTAAATAAAAAAAAAAATAAGAAATTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAATGGCCA---------TCTAATT-------------TGAA-------------------T--------------TATCTTTCAGGTTATA--------------------CTAAACATGACCG------AGTTAAAACAATTCCTGTSizeHit CountTotal NormTotal
No Reads
droEle1
ATTTATG----T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTA----ATT--------TCAGGA---------------------------------------------------------ATAATTATGACGGAATAATTATGACGGAAATTTCTATSizeHit CountTotal NormTotal
No Reads
droRho1
ATAAAAA----TTAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------AAA---------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTT--TTTA----CTT--------TCAGAT---------------------------------A-----------------TGAAATAACAAAATGTGCGAAAAAATTATTAAACCGTTCCTTTSizeHit CountTotal NormTotal
No Reads
droBia1
ACATACG----TA--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAC---------------------------------------------------------------------------------------------------A----TACGTTTAGCA------------------------AATTATGTAT-----GTATGATACGAACTGACTGAAG-------------------------------------TT-------------------------------------------TCATTAAATAAATTACAT--------------------------------------------------------------------------------------------------ATT--AC----------------------CCATTGAACCATTCTTGTSizeHit CountTotal NormTotal
No Reads
droTak1
GGGGATA----AA--ACAACATGTAT-------------------------------------------------------------------------------------------------------------------------------------------------------------AATAA---------CAACGA--------------------------GCTCGTGTGGAT------------------------------------------------------------------------------------------------------------------------------------------------ATAATGG------------------------------------GGAGCTGAATAAAAAT------------------------------------------------AAACAAGGCAAATTGACA---------TCTAATT----TACTG----TTTTGGTGTTT--------TTGAATTT-CAGTAATTT--------------A-TC--G--------------------AAATGGCAG------AGCTGAAACCATTTCTTTSizeHit CountTotal NormTotal
No Reads
droEug1
ACAAAGG----TCAGAG-----------------------------------------------------------------------------------------------------------------------------------------------------------ACAGTAAGACTGACAACATTTAGTAGAGAGAGAGAGAGAAAAAACGTACGTATGTAC---------------------------------------------------------------------------------------------------ATGCATACGTTTAGTA------------------------AAGTATGTACACAGAATAGGATACGAACTGACTGAAGTCAGTGACAGAATTAAGTAAAGCGAAA-TCAG-----TT-------------------------------------------TCACCAAATAAATTATATATATA---------TATATAT----ACATATGTATATAGATTTAT--------TCAAATTTATTACAGATT--------------A-ACGCGGA----ATT--AC----------------------CTATTAAACCATTCTT--SizeHit CountTotal NormTotal
No Reads
dm3
TCAACAAAATGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTCTTAAAAGGGAAAAATATAATTATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA-------------------T--------------TTTCTTTTGAATT---------TTAA--AGTGCAAATGAAACATGGCTGAGCACAATTTGAAACCATTCTTATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......AATGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTCTTAAAAGGGAA........................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGCTGAGCACAATTTG.............2031.6750000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGCTGAGCACAATTTGAAACC........2521.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGGCTGAGCACAATTTG.............2131.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000200000000000000000000000000000000000
.........TGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTCTTAAAAGGGAAAAATA...................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAA--AGTGCAAATGAAACATG............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
........ATGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTCTTAAAAGGGAAA.......................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGAATT---------TTAA--AGTGCAAAA....................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA--AGTGCAAATGAAACATGGCTGA.......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AAATGTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTCTTAAAAGGGA.........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGAAACATGGCTGAGCAC...................2130.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGAAACATGGCTGAGCA....................2130.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAACATGGCTGAGCACAATT...............2330.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACATGGCTGAGCACAATTTGA............2530.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAACATGGCTGAGCACAATT...............2130.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACATGGCTGAGCACAATTTGAAA..........2730.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCACAATTTGAAACCATTCTTA.2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................AATTATATA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATA-------------------T--------------TTTCTTT..................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAATGAAACATGGCTGAGCACAATC...............2830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACATGGCTGAGCACAATTT..............2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGCTGAGCACAATTTGAA...........2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAACATGGCTGAGCAC...................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAATGAAACATGGCTGAGCAC...................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAACATGGCTGAGCACA..................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAATGAAACATGGCTGAGCACAAT................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGCTGAGCACAATTTGAAAC.........2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAACATGGCTGAGCACAA.................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAATGAAACATGGCTGAGC.....................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTGAGCACAATTTGAAA..........2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAACATGGCTGAGCACAAT................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATGAAACATGGCTGAGCACAATT...............2630.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAATGAAACATGGCTGAGCACAAG................2730.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
droSim2
TAATCTT----TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------TT--------TCAGACAT----------AACGGTTGTTT-----------------G--------------------TGATGGCGGAGAGCGTAATTAAACCATTCCTTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------TT--------TCAGACAT----------AACGGTTGTTT-----------------G--------------------T................................24224.5049000200101044010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------AACGGTTGTTT-----------------G--------------------TGATGGCGGA.......................23221.50430000001064260141000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------TCAGACAT----------AACGGTTGTTT-----------------G--------------------TGAT.............................25218.0036000000000036000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT----------AACGGTTGTTT-----------------G--------------------TGATGGCGGA.......................25217.0034000000820001041000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------TT--------TCAGACAT----------AACGGTTGTTT-----------------G--------------------TGA..............................26214.5029000000101819000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACAT----------AACGGTTGTTT-----------------G--------------------TGATGGCGGA.......................29210.0020000000710300000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------AACGGTTGTTT-----------------G--------------------TGATGGCG.........................2129.0018000100010015010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------TCAGACAT----------AACGGTTGTTT-----------------G--------------------TGA..............................2427.501500000024216000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAT----------AACGGTTGTTT-----------------G--------------------T................................1826.0012000000011010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGACAT----------AACGGTTGTTT-----------------G--------------------TGATGGCGGA.......................3024.50900000072000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTT-----------------G--------------------TGATGGCGGAGAGCGTAAT..............2514.00400000000001120000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------TT--------TCAGACAT----------AACGGTTGTTT-----------------G--------------------TGAT.............................2723.50700100000006000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAT----------AACGGTTGTTT-----------------G--------------------TGATGGCGGA.......................2823.00600000024000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--------TCAGACAT----------AACGGTTGTTT-----------------G--------------------TGA..............................2522.50500000010013000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT----------AACGGTTGTTT-----------------G--------------------TGATGGCGGA.......................2422.50500000012100010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------AACGGTTGTTT-----------------G--------------------TGATGGCGG........................2222.50500000001002020000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------TT--------TCAGACAT----------AACGGTTGTTT-----------------G--------------------TGT..............................2622.00400000000004000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAT----------AACGGTTGTTT-----------------G--------------------TGATGGCGGA.......................2722.00400000012100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------AACGGTTGTTT-----------------G--------------------TGATGGCGGAA......................2422.00400000000000040000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------AACGGTTGTTT-----------------G--------------------TGATGGC..........................2021.50300200000000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------TT--------TCAGACAT----------AACGGTTGT.........................................................................2021.50300000000002100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGACAT----------AACGGTTGTTT-----------------G--------------------TGAT.............................2421.50300000000003000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------AACGGTTGTTT-----------------G--------------------TGATGGAA.........................2121.00200000002000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--------TCAGACAT----------AACGGTTGTTT-----------------G--------------------TGAT.............................2621.00200000000002000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGACAT----------AACGGTTGTTT-----------------G--------------------TGATG............................2521.00200000000002000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTT-----------------G--------------------TGATGGCGGA.......................1821.00200000000002000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--------TT--------TCAGACAT----------AACGGTTGTTT-----------------G--------------------T................................2521.00200000000002000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAT----------AACGGTTGTTT-----------------G--------------------TGATGG...........................2321.00200000000002000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT----------AACGGTTGTTT-----------------G--------------------TGATGGCGGAGA.....................2711.00100000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGACAT----------AACGGTTGTTT-----------------G--------------------T................................2121.00200000000002000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTTGTTT-----------------G--------------------TGAT.............................1621.00200000000002000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------AACGGTTGTTT-----------------G--------------------TGATGGCGGAGAG....................2611.00100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTTT-----------------G--------------------TGATGGCGGA.......................1921.00200000000002000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------AACGGTTGTTT-----------------G--------------------TGATGGCGT........................2221.00200000000000020000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------G--------------------TGATGGCGGAGAGCGTAATT.............2211.00100000000010000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGGAGAGCGTAATTAAACCATTCCT..2811.00100000000001000000
TAATCTT----TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------TT--------TCAGACAT----------AACGGT............................................................................2711.00100000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------TT--------TCAGACAT----------AACGGTTGTTT-----------------......................................................2221.00200000001001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------TT--------TCAGACAT----------AACGGTTGTTT-----------------G--------------------TG...............................2521.00200010000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTGTTT-----------------G--------------------TGATGGCG.........................1820.50100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------TCAGACAT----------AACGGTTGTTT-----------------G--------------------TGATGGA..........................2820.50100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------TT--------TCAGACAT----------AACGGTTGTT........................................................................2120.50100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------AACGGTTGTTT-----------------G--------------------TGATGGCGATA......................2420.50100000001000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACAT----------AACGGTTGTTT-----------------G--------------------A................................2020.50100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--------TCAGACAT----------AACGGTTGTTT-----------------G--------------------TG...............................2420.50100000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAT----------AACGGTTGTTT-----------------G--------------------TGA..............................2020.50100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGACAT----------AACGGTTGTTT-----------------G--------------------TGATGGC..........................2720.50100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------TT--------TCAGACAT----------AACGGTTGTTT-----------------G--------------------TGATGGCGGA.......................3320.50100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT----------AACGGTTGTTT-----------------G--------------------.................................1620.50100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAT----------AACGGTTGTTT-----------------G--------------------TGATGGCGG........................2620.50100010000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTTGTTT-----------------G--------------------TGATGGCG.........................1920.50100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT----------AACGGTTGTTT-----------------G--------------------TGATGGCG.........................2220.50100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------TCAGACAT----------AACGGTTGT.........................................................................1820.50100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT----------AACGGTTGTTT-----------------G--------------------TGA..............................1820.50100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGTTGTTT-----------------G--------------------TGATGGCGG........................2120.50100000000000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------AACGGTTGTTT-----------------G--------------------TGATGGTA.........................2120.50100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACAT----------AACGGTTGTTT-----------------G--------------------TGAT.............................2320.50100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--------TCAGACAT----------AACGGTTGTTT-----------------G--------------------T................................2320.50100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAT----------AACGGTTGTTT-----------------G--------------------.................................1720.50100000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAT----------AACGGTTGTTT-----------------G--------------------TGATGGC..........................2520.50100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------TCAGACAT----------AACGGTTGTTT-----------------G--------------------TA...............................2320.50100000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACAT----------AACGGTTGTTT-----------------G--------------------T................................2020.50100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACAT----------AACGGTTGTTT-----------------G--------------------TGATGG...........................2520.50100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAT----------AACGGTTGTTT-----------------G--------------------TG...............................1920.50100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGACAT----------AACGGTTGTTT-----------------G--------------------TGATGGA..........................2720.50100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT----------AACGGTTGTTT-----------------G--------------------TGATGGCGGA.......................2620.50100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGTTT-----------------G--------------------TGATGGCG.........................1720.50100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------AACGGTTGTTT-----------------G--------------------TGATGGCGGAC......................2420.50100000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGACAT----------AACGGTTGTTT-----------------G--------------------TGT..............................2320.50100000000001000000
...........TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT--------TT--------TCAGACAT----------AACGGTT...........................................................................2120.50100000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------AACGGTTGTTT-----------------G--------------------TGATGGGT.........................2120.50100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------AACGGTTGTTT-----------------G--------------------TGATGGCGGT.......................2320.50100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAT----------AACGGTTGTTT-----------------......................................................1720.50100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------AACGGTTGTTT-----------------G--------------------TGATGGCT.........................2120.50100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAT----------AACGGTTGTTT-----------------G--------------------T................................1720.50100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------TCAGACAT----------AACGGTT...........................................................................1630.33100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGACAT----------AACGGTT...........................................................................1530.33100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------AACGGTTGTTT-----------------G--------------------TGATGA...........................1930.33100000001000000000
droSec2
CAAGGCA----AT--C-------------------------------AATAAAAAGGAAAA---------------------------------------------------------------------------------------------------------------AA----AACTTAACATTATTCAAAAGAGTGG--------------------------GCGTGTCAAAAA------------------------------------------------------------------------------------------------------------------------------------------------TTTTTCG------------------------------------GCAAATCAATAAAAATTTGCAAGATTAATAAAATTATGAAAAAATATCCGAAAATTATTCAAGTA------TTAGTCGT--GAATAATACATAATATTCTA--TTTG----ATT--------TCTGGG--------------GTATTAATT-----------------C--------------------CGATAGCAGATAATGCAATAAAGCCATTTCTCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAATTATGAAAAAAT.................................................................................................................................................................................18200.0510010
droYak3
AAATGTA----AT--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATATA---------TATATAT----ATATATATATATA-------------------T--------------TCTCTTTTGAATT---------TTAG--TTTGCAAACAAAACATGGCTAAGCACAATTTGAAACCATTCTTATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACCTTTTCAGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 10:17 PM