dwi_2307

exon [dwil_GLEANR_3876:4]; CDS [Dwil\GK21046-cds]; exon [dwil_GLEANR_3876:3]; CDS [Dwil\GK21046-cds]; intron [Dwil\GK21046-in]

Name	Class	Family	Strand
Helitron-2N1_DVir	RC	Helitron	-

Name

Class

Family

Strand

Helitron-2N1_DVir

Helitron

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TGAAGGAGCAGATTGCCCTCAGCAGAGAAGCATTTATTCGAATTGCGGAGGTACGTAAATTTCCGACCCCATAAAGTATATATTCTTGATGAGAAGCTGAGTCGATATTGTCCGTCTGTCCGTTCGTTGCAGTGAACGTAATTCCAAAATTACTGCAAGGGTATAAAAACTTCGGCATAGTCGAAGTTTCCATCTAAGTTTCCCATTCTAATTTTTCAAGTTTTTCTTTCTCCCAACAGGACCGGAAGGCAAAGGCAGAACTTGTGCAGTCGGTGCAGGTTCCAATGCC ************************************************************************************************************.............((.(((((((((..............))))))))).))******************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V118 embryo	M020 head	V117 male body
..........................................................................................................................................................................................................................................................AAAGGCAGAACTTGTGCAGTCGG................	23	0	1	4.00	4	4	0	0	0
.........................................................................................................................................................................................................................................................CAAAGGCAGAACTTGTGCAGTCGG................	24	0	1	2.00	2	1	1	0	0
...........................................................................................................................................................................................................................................................AAGGCAGAACTTGTGCAGTCGGT...............	23	0	1	2.00	2	1	0	1	0
...........................................................................................................................................................................................................................................................AAGGCAGAACTTGTGCAGTCGG................	22	0	1	2.00	2	2	0	0	0
...........................................................................................................................................................................................................................................................AAGGCAGAACTTGTGCAGTCGGTG..............	24	0	1	2.00	2	2	0	0	0
...........................................................................................................................................AATTCCAAAATTACTGCAAGGG................................................................................................................................	22	0	4	1.50	6	6	0	0	0
...........................................................................................................................................................................................................................................................AAGGCAGAACTTGTGCAGTCGGTGC.............	25	0	1	1.00	1	1	0	0	0
..........................................................................................................................................................................................................................................................AAAGGCAGAACTTGTGCAGTCG.................	22	0	1	1.00	1	1	0	0	0
..........................................................................................................................................................................................................................................................AAAGGCAGAACTTGTGCAGTCGGT...............	24	0	1	1.00	1	1	0	0	0
.....GAGCAGATTGCCCTCAGCAGAGAAGC..................................................................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0
..................TCAGCAGAGAAGCATTTATTCGAAT......................................................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0
...........................................................................................................................................AATTCCAAAATTACTGCAAGGGT...............................................................................................................................	23	0	4	1.00	4	4	0	0	0
................................TTTATTCGAATTGCGGAGGACCG..........................................................................................................................................................................................................................................	23	2	1	1.00	1	1	0	0	0
..................................................................................................................................................................................................................................................................AACTTGTGCAGTCGGTGCAGG..........	21	0	1	1.00	1	1	0	0	0
..........................................................................................................................................................................................................................................................AAAGGCAGAACTTGTGCAGTCGT................	23	1	1	1.00	1	1	0	0	0
............................................................................................................................................................................................................................................................AGGCAGAACTTGTGCAGTCGG................	21	0	1	1.00	1	1	0	0	0
..................................................................................................................................AGTGAACGTAATTCCAAAATTAC........................................................................................................................................	23	0	4	0.50	2	2	0	0	0
...........................................................................................................................................................................................................................................................................AGTCGGTGCAGGTTCCAATGC.	21	0	3	0.33	1	1	0	0	0
......................................................................................................................................................................................................................................TCCCAACAGGAGCGGAAGGCAAAGGCAG...............................	28	1	3	0.33	1	1	0	0	0
........................................................................................................................................CGTAATTCCAAAATTACTGCAAGGG................................................................................................................................	25	0	4	0.25	1	1	0	0	0
.........................................................................................................................................GTAATTCCAAAATTACTGCAAGG.................................................................................................................................	23	0	4	0.25	1	1	0	0	0
............................................................................................................................................................................................................................................................................GTCGGTGCAGGTTCCAATGC.	20	0	4	0.25	1	0	1	0	0
...........................................................................................................................................AATTCCAAAATTACTGCAAGGGTA..............................................................................................................................	24	0	4	0.25	1	1	0	0	0
...............................................................................................................................TGCAGTGAACGTAATTCCAAAATTACT.......................................................................................................................................	27	0	4	0.25	1	0	1	0	0
............................................................................................................................................ATTCCAAAATTACTGCAAGGGT...............................................................................................................................	22	0	4	0.25	1	1	0	0	0
............................................................................................................................................ATTCCAAAATTACTGCAAGG.................................................................................................................................	20	0	4	0.25	1	1	0	0	0
..........................................................................................................................................TAATTCCAAAATTACTGCAAGGGT...............................................................................................................................	24	0	4	0.25	1	1	0	0	0
..............................................................................................................TCCGTCTGTCCGTTCGTTGCA..............................................................................................................................................................	21	0	4	0.25	1	0	0	0	1
...............................................................................................................CCGTCTGTCCGTTCGTTGCAGTGAACG.......................................................................................................................................................	27	0	4	0.25	1	1	0	0	0
........................................................................................................................................CGTAATTCCAAGATTACTGCAAGG.................................................................................................................................	24	1	4	0.25	1	1	0	0	0
........................................................................................................................................CGTAATTCCAAAATTACTGCAAGG.................................................................................................................................	24	0	4	0.25	1	1	0	0	0
................................................................................................................................................................................................................................................................AGAATGTGTGCAGCCGGTGC.............	20	3	5	0.20	1	1	0	0	0
...............................................................................................................................................CCAAAAGTACGGCAAGGGT...............................................................................................................................	19	2	7	0.14	1	0	1	0	0
................................................................................................................................GCAGTGGGCGTAATCCCAA..............................................................................................................................................	19	3	14	0.07	1	0	0	0	1
........................................AATTGCGGAGGGAGGTCAA......................................................................................................................................................................................................................................	19	3	20	0.05	1	1	0	0	0
...................................................................................................................................................AATTACTGCAGGGGTTTCA...........................................................................................................................	19	3	20	0.05	1	0	1	0	0
...................................ATTCGAAATGCGGACGCAC...........................................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	1	0

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGAAGGAGCAGATTGCCCTCAGCAGAGAAGCATTTATTCGAATTGCGGAGGTACGTAAATTTCCGACCCCATAAAGTATATATTCTTGATGAGAAGCTGAGTCGATATTGTCCGTCTGTCCGTTCGTTGCAGTGAACGTAATTCCAAAATTACTGCAAGGGTATAAAAACTTCGGCATAGTCGAAGTTTCCATCTAAGTTTCCCATTCTAATTTTTCAAGTTTTTCTTTCTCCCAACAGGACCGGAAGGCAAAGGCAGAACTTGTGCAGTCGGTGCAGGTTCCAATGCC
**************************************************************************************************************.............((.(((((((((..............))))))))).))********************************************************************************************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M045
female body

V118
embryo

M020
head

V117
male body

..........................................................................................................................................................................................................................................................AAAGGCAGAACTTGTGCAGTCGG................

4.00

2.00

...........................................................................................................................................AATTCCAAAATTACTGCAAGGG................................................................................................................................

1.50

1.00

.....GAGCAGATTGCCCTCAGCAGAGAAGC..................................................................................................................................................................................................................................................................

1.00

..................TCAGCAGAGAAGCATTTATTCGAAT......................................................................................................................................................................................................................................................

1.00

...........................................................................................................................................AATTCCAAAATTACTGCAAGGGT...............................................................................................................................

1.00

................................TTTATTCGAATTGCGGAGGACCG..........................................................................................................................................................................................................................................

1.00

..................................................................................................................................AGTGAACGTAATTCCAAAATTAC........................................................................................................................................

0.50

0.33

......................................................................................................................................................................................................................................TCCCAACAGGAGCGGAAGGCAAAGGCAG...............................

0.33

........................................................................................................................................CGTAATTCCAAAATTACTGCAAGGG................................................................................................................................

0.25

.........................................................................................................................................GTAATTCCAAAATTACTGCAAGG.................................................................................................................................

0.25

...........................................................................................................................................AATTCCAAAATTACTGCAAGGGTA..............................................................................................................................

0.25

...............................................................................................................................TGCAGTGAACGTAATTCCAAAATTACT.......................................................................................................................................

0.25

............................................................................................................................................ATTCCAAAATTACTGCAAGGGT...............................................................................................................................

0.25

............................................................................................................................................ATTCCAAAATTACTGCAAGG.................................................................................................................................

0.25

..........................................................................................................................................TAATTCCAAAATTACTGCAAGGGT...............................................................................................................................

0.25

..............................................................................................................TCCGTCTGTCCGTTCGTTGCA..............................................................................................................................................................

0.25

...............................................................................................................CCGTCTGTCCGTTCGTTGCAGTGAACG.......................................................................................................................................................

0.25

........................................................................................................................................CGTAATTCCAAGATTACTGCAAGG.................................................................................................................................

0.25

........................................................................................................................................CGTAATTCCAAAATTACTGCAAGG.................................................................................................................................

0.25

0.20

...............................................................................................................................................CCAAAAGTACGGCAAGGGT...............................................................................................................................

0.14

................................................................................................................................GCAGTGGGCGTAATCCCAA..............................................................................................................................................

0.07

........................................AATTGCGGAGGGAGGTCAA......................................................................................................................................................................................................................................

0.05

...................................................................................................................................................AATTACTGCAGGGGTTTCA...........................................................................................................................

0.05

...................................ATTCGAAATGCGGACGCAC...........................................................................................................................................................................................................................................

0.05

ACTTCCTCGTCTAACGGGAGTCGTCTCTTCGTAAATAAGCTTAACGCCTCCATGCATTTAAAGGCTGGGGTATTTCATATATAAGAACTACTCTTCGACTCAGCTATAACAGGCAGACAGGCAAGCAACGTCACTTGCATTAAGGTTTTAATGACGTTCCCATATTTTTGAAGCCGTATCAGCTTCAAAGGTAGATTCAAAGGGTAAGATTAAAAAGTTCAAAAAGAAAGAGGGTTGTCCTGGCCTTCCGTTTCCGTCTTGAACACGTCAGCCACGTCCAAGGTTACGG ******************************************************************************************************************************.............((.(((((((((..............))))))))).))************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V118 embryo	V117 male body	M020 head	V119 head
...........................................................................................................................AGCAACGTCACTTGCATTAAGGTTTT............................................................................................................................................	26	0	4	32.50	130	117	13	0	0	0
..............................................................................................................................AACGTCACTTGCATTAAGGTTTTAAT.........................................................................................................................................	26	0	4	31.25	125	64	61	0	0	0
........................................................................................................................GCAAGCAACGTCACTTGCATTAAGGT...............................................................................................................................................	26	0	4	30.50	122	106	16	0	0	0
............................................................................................................................GCAACGTCACTTGCATTAAGGTTTT............................................................................................................................................	25	0	4	26.25	105	75	29	1	0	0
.............................................................................................................................CAACGTCACTTGCATTAAGGTTTTAAT.........................................................................................................................................	27	0	4	13.75	55	46	9	0	0	0
........................................................................................................................GCAAGCAACGTCACTTGCATTAAGGTTT.............................................................................................................................................	28	0	4	12.50	50	41	9	0	0	0
........................................................................................................................GCAAGCAACGTCACTTGCATTAAGGTT..............................................................................................................................................	27	0	4	12.25	49	42	7	0	0	0
............................................................................................................ACAGGCAGACAGGCAAGCAACGTCACT..........................................................................................................................................................	27	0	4	11.75	47	38	9	0	0	0
.........................................................................................................................CAAGCAACGTCACTTGCATTAAGGTTTT............................................................................................................................................	28	0	4	11.75	47	18	29	0	0	0
.........................................................................................................................CAAGCAACGTCACTTGCATTAAGGTTT.............................................................................................................................................	27	0	4	10.00	40	23	17	0	0	0
..........................................................................................................................AAGCAACGTCACTTGCATTAAGGTTTT............................................................................................................................................	27	0	4	8.75	35	22	13	0	0	0
................................................................................................................GCAGACAGGCAAGCAACGTCACTTGCAT.....................................................................................................................................................	28	0	4	8.75	35	32	3	0	0	0
...........................................................................................................................AGCAACGTCACTTGCATTAAGGTTT.............................................................................................................................................	25	0	4	8.00	32	28	4	0	0	0
................................................................................................................................CGTCACTTGCATTAAGGTTTTAAT.........................................................................................................................................	24	0	4	6.75	27	14	11	2	0	0
.............................................................................................................................CAACGTCACTTGCATTAAGGTTTT............................................................................................................................................	24	0	4	6.00	24	18	4	2	0	0
.............................................................................................................CAGGCAGACAGGCAAGCAACGTCACT..........................................................................................................................................................	26	0	4	5.75	23	18	5	0	0	0
........................................................................................................................GCAAGCAACGTCACTTGCATTAAGGTTTT............................................................................................................................................	29	0	4	5.25	21	20	0	1	0	0
........................................................................................................................................GCATTAAGGTTTTAATGACGTTCCCAT..............................................................................................................................	27	0	4	4.75	19	1	18	0	0	0
..............................................................................................................AGGCAGACAGGCAAGCAACGTCACT..........................................................................................................................................................	25	0	4	4.50	18	8	9	1	0	0
..........................................................................................................................AAGCAACGTCACTTGCATTAAGGTTT.............................................................................................................................................	26	0	4	4.25	17	8	9	0	0	0
..................................................................................................................AGACAGGCAAGCAACGTCACTTGCAT.....................................................................................................................................................	26	0	4	4.00	16	14	2	0	0	0
.........................................................................................................................CAAGCAACGTCACTTGCATTAAGGT...............................................................................................................................................	25	0	4	4.00	16	14	2	0	0	0
.................................................................................................................................................................................................................................................GGCCTTCCGTTTCCGTCTTGAACACGT.....................	27	0	1	4.00	4	4	0	0	0	0
...............................................................................................................GGCAGACAGGCAAGCAACGTCACT..........................................................................................................................................................	24	0	4	3.75	15	9	6	0	0	0
........................................................................................................................GCAAGCAACGTCACTTGCATTAAGG................................................................................................................................................	25	0	4	3.75	15	15	0	0	0	0
...............................................................................................................................ACGTCACTTGCATTAAGGTTTTAAT.........................................................................................................................................	25	0	4	3.75	15	13	2	0	0	0
............................................................................................................ACAGGCAGACAGGCAAGCAACGTCACTT.........................................................................................................................................................	28	0	4	3.50	14	11	3	0	0	0
........................................................................................................................................................................................TCAAAGGTAGATTCAAAGGGTAAGAT...............................................................................	26	0	2	3.50	7	4	1	2	0	0
.................................................................................................................CAGACAGGCAAGCAACGTCACTTGCAT.....................................................................................................................................................	27	0	4	3.00	12	12	0	0	0	0
.....................CGTCTCTTCGTAAATAAGCTTAACGCCT................................................................................................................................................................................................................................................	28	0	1	3.00	3	3	0	0	0	0
..............................................................................................................................AACGTCACTTGCATTAAGGTTTTAA..........................................................................................................................................	25	0	4	3.00	12	9	3	0	0	0
................................................................................................................GCAGACAGGCAAGCAACGTCACT..........................................................................................................................................................	23	0	4	2.75	11	7	4	0	0	0
............................................................................................................................GCAACGTCACTTGCATTAAGGTTT.............................................................................................................................................	24	0	4	2.75	11	10	1	0	0	0
...............................................................................................................GGCAGACAGGCAAGCAACGTCACTT.........................................................................................................................................................	25	0	4	2.50	10	5	5	0	0	0
..............................................................................................................AGGCAGACAGGCAAGCAACGTCACTT.........................................................................................................................................................	26	0	4	2.00	8	3	5	0	0	0
...........................................................................................................................................................................................................................................TGTCCTGGCCTTCCGTTTCCGTCTT.............................	25	0	1	2.00	2	2	0	0	0	0
.......................................................................................................................GGCAAGCAACGTCACTTGCATTAAGGT...............................................................................................................................................	27	0	4	2.00	8	7	1	0	0	0
.........................................................................................................................CAAGCAACGTCACTTGCATTAAGGTT..............................................................................................................................................	26	0	4	2.00	8	5	3	0	0	0
......................................................................................................................AGGCAAGCAACGTCACTTGCATTAAGGT...............................................................................................................................................	28	0	4	2.00	8	6	2	0	0	0
.............................CGTAAATAAGCTTAACGCCTCCATGCAT........................................................................................................................................................................................................................................	28	0	1	2.00	2	2	0	0	0	0
...........................................................................................................................AGCAACGTCACTTGCATTAAGGTT..............................................................................................................................................	24	0	4	1.50	6	6	0	0	0	0
..................................................................................................................................................................................................................................................GCCTTCCGTTTCCGTCTTTGGCACGT.....................	26	3	3	1.33	4	4	0	0	0	0
......................................................................................................................................................................TTTGAAGCCGTATCAGCTTCAAAGGT.................................................................................................	26	0	3	1.33	4	3	1	0	0	0
.......................................................................................................................................TGCATTAAGGTTTTAATGACGTTCCCAT..............................................................................................................................	28	0	4	1.25	5	4	0	1	0	0
..........................................................................................................................AAGCAACGTCACTTGCATTAAGGTT..............................................................................................................................................	25	0	4	1.25	5	4	1	0	0	0
.............................................................................TTTATAAGAACTACTCTTCGACTCAGC.........................................................................................................................................................................................	27	1	1	1.00	1	1	0	0	0	0
......................................................................................................................................................................................TTTCAAAGGTAGATTCAAAGGGTAAGAT...............................................................................	28	1	2	1.00	2	1	0	1	0	0
......................................................................................................................................................................................................................................................TCCGTTTCCGTCTTGAACACGTCAGC.................	26	0	1	1.00	1	1	0	0	0	0
.........................................................................................ACTCTTCGACTCAGCTATAACAGGCAGA............................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0
...............................................................................................CGACTCAGCTATAACAGGCAGA............................................................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0
..............................................................................................................................AACGTCACTTGCATTAAGGTTT.............................................................................................................................................	22	0	4	1.00	4	4	0	0	0	0
........................CTCTTCGTAAATAGGCTTAACGCCT................................................................................................................................................................................................................................................	25	1	1	1.00	1	1	0	0	0	0
...............................................................................................................GGCAGACAGGCAAGCAACGTCAC...........................................................................................................................................................	23	0	4	1.00	4	4	0	0	0	0
............................................................................................................................................................................................................................................GTCCTCGCCTTCCGTTTCCGTCTGGAC..........................	27	3	1	1.00	1	1	0	0	0	0
......................................................................................................................................................................................................................................................TCCGTTTCCGTCTTGAACACG......................	21	0	1	1.00	1	1	0	0	0	0
...........................................................................................................................................................................AGCCGTATCAGCTTCAAAGGTAGAT.............................................................................................	25	0	2	1.00	2	0	2	0	0	0
........................................................................................................................................................................................................................................GGTTGTCCTGTCCTTCCGTTTCCGT................................	25	1	1	1.00	1	1	0	0	0	0
............................TCGTAAATAAGCTTAACGCCTCCATGCA.........................................................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0
...................................................................................AGAACTACTCTTCGACTCAGCTATAACA..................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0	0
.................................................................................................................................................................................................................................................................CTTGAACACGTCAGCCACGTCCAAGGT.....	27	0	1	1.00	1	1	0	0	0	0
...................................................................................................................GACAGGCAAGCAACGTCACTTGCAT.....................................................................................................................................................	25	0	4	1.00	4	4	0	0	0	0
.............................................................................................................................CAACGTCACTTGCATTAAGGTTTTAA..........................................................................................................................................	26	0	4	1.00	4	2	2	0	0	0
..TTCCTCGTCTAACGGGAGTCGTCTCT.....................................................................................................................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0
...............................................................................................CGACTCAGCTATAACAGGCAGACAG.........................................................................................................................................................................	25	0	1	1.00	1	0	0	0	1	0
....................................................................................................................ACAGGCAAGCAACGTCACTTGCAT.....................................................................................................................................................	24	0	4	1.00	4	4	0	0	0	0
...............GGGAGTCGTCTCTTCGTAAATAAGCTT.......................................................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0
.................................................................................................................CAGACAGGCAAGCAACGTCACTT.........................................................................................................................................................	23	0	4	0.75	3	1	0	0	2	0
.............................................................................................................................CAACGTCACTTGCATTAAGGTT..............................................................................................................................................	22	0	4	0.75	3	3	0	0	0	0
............................................................................................................ACAGGCAGACAGGCAAGCAACGT..............................................................................................................................................................	23	0	4	0.75	3	1	2	0	0	0
................................................................................................................GCAGACAGGCAAGCAACGTCACTTGCA......................................................................................................................................................	27	0	4	0.75	3	3	0	0	0	0
................................................................................................................GCAGACAGGCAAGCAACGTCAC...........................................................................................................................................................	22	0	4	0.75	3	2	1	0	0	0
............................................................................................................ACAGGCAGACAGGCAAGCAACGTCAC...........................................................................................................................................................	26	0	4	0.75	3	2	1	0	0	0
.................................................................................................................................GTCACTTGCATTAAGGTTTTAATGACGT....................................................................................................................................	28	0	4	0.75	3	1	2	0	0	0
.............................................................................................................CAGGCAGACAGGCAAGCAACGTCACTT.........................................................................................................................................................	27	0	4	0.75	3	3	0	0	0	0
..............................................................................................................................AACGTCACTTGCATTAAGGTTTT............................................................................................................................................	23	0	4	0.75	3	2	1	0	0	0
..........................................................................................................................................................................................AAAGGTAGATTCAAAGGGTAAGAT...............................................................................	24	0	2	0.50	1	0	1	0	0	0
............................................................................................................................GCAACGTCACTTGCATTAAGGTT..............................................................................................................................................	23	0	4	0.50	2	2	0	0	0	0
...................................................................................................................................................................................CAGCTTCAAAGGTAGATTCAAAGGGT....................................................................................	26	0	2	0.50	1	1	0	0	0	0
...........................................................................................................................................................................................................................................TGTCCTTGCCTTCCGTTTCCGTCTT.............................	25	1	2	0.50	1	1	0	0	0	0
........................................................................................................................GCAAGCGACGTCACTTGCATTAAGGT...............................................................................................................................................	26	1	4	0.50	2	2	0	0	0	0
.........................................................................................................................................................................................CAAAGGTAGATTCAAAGGGTAAGAT...............................................................................	25	0	2	0.50	1	0	1	0	0	0
................................................................................................................................CGTCACTTGCATTAAGGTTT.............................................................................................................................................	20	0	4	0.50	2	1	1	0	0	0
..........................................................................................................................AAGCAACGTCACTTGCATTAAGGT...............................................................................................................................................	24	0	4	0.50	2	2	0	0	0	0
................................................................................................................GCAGACAGGCAAGCAACGTCACTT.........................................................................................................................................................	24	0	4	0.50	2	2	0	0	0	0
...............................................................................................................GGCAGACAGGCAAGCAACGTCACTTG........................................................................................................................................................	26	0	4	0.50	2	2	0	0	0	0
.................................................................................................................CAGACAGGCAAGCAACGTCACTTGCATT....................................................................................................................................................	28	0	4	0.50	2	2	0	0	0	0
........................................................................................................................GCAAGCAACGTCACTTGCATTAAG.................................................................................................................................................	24	0	4	0.50	2	2	0	0	0	0
.................................................CCATGCATTTAAAGGCTGGGGTATTT......................................................................................................................................................................................................................	26	0	2	0.50	1	0	1	0	0	0
.......................................................................................................................GGCAAGCAACGTCACTTGCATTAAGGTT..............................................................................................................................................	28	0	4	0.50	2	2	0	0	0	0
.........................................................................................................................CAAGCAACGTCACTTGAATTAAGGTTTT............................................................................................................................................	28	1	4	0.50	2	2	0	0	0	0
.............................................................................................................................AAACGTCACTTGCATTAAGGTTTTAAT.........................................................................................................................................	27	1	4	0.50	2	0	2	0	0	0
.............................................................................................................................CAACGTCACTTGCATTAAGGTTT.............................................................................................................................................	23	0	4	0.50	2	2	0	0	0	0
.........................................................................................................................................................................ATAGCCGTATCAGCTTCAAAGGTAGAT.............................................................................................	27	2	2	0.50	1	1	0	0	0	0
..............................................................................................................AGGCAGACAGGCAAGCAACGT..............................................................................................................................................................	21	0	4	0.50	2	1	1	0	0	0
.............................................................................................................................TAACGTCACTTGCATTAAGGTTTTAAT.........................................................................................................................................	27	1	4	0.50	2	2	0	0	0	0
...................................................................................AGGACTAATCTTCGACTCA...........................................................................................................................................................................................	19	2	3	0.33	1	1	0	0	0	0
........................................TTAACGCCTCCATGCATTTAAAGGC................................................................................................................................................................................................................................	25	0	3	0.33	1	1	0	0	0	0
.......................................................................................................................................................................TTGAAGCCGTATCAGCTTCAAAGGT.................................................................................................	25	0	3	0.33	1	0	1	0	0	0
.....................................................GCATTTAAAGGTTGGGGTATTTCATAT.................................................................................................................................................................................................................	27	1	3	0.33	1	1	0	0	0	0
.....................................................GCATTTAAAGGTTGGGGTATTTCAT...................................................................................................................................................................................................................	25	1	3	0.33	1	1	0	0	0	0
...........................................................................................................................................................GTTCCCATATTTTTGAAGCCGTATCA............................................................................................................	26	0	3	0.33	1	0	1	0	0	0
........................................................................................................................................................................TGAAGCCGTATCAGCTTCAAAGGT.................................................................................................	24	0	3	0.33	1	0	1	0	0	0
...............................................................................................................................ACGTCACTTGCATTAAGGTT..............................................................................................................................................	20	0	4	0.25	1	1	0	0	0	0
................................................................................................................GCAGACAGGCAAGCAAAGTCACTTGCA......................................................................................................................................................	27	1	4	0.25	1	1	0	0	0	0
.........................................................................................................................AAAGCAACGTCACTTGCATTAAGGTTT.............................................................................................................................................	27	1	4	0.25	1	1	0	0	0	0
..............................................................................................................ACGCAGACAGGCAAGCAACGTCACTT.........................................................................................................................................................	26	1	4	0.25	1	1	0	0	0	0
..............................................................................................................................AACGTCACTTGCATTAAGCTTTTAAT.........................................................................................................................................	26	1	4	0.25	1	0	1	0	0	0
.............................................................................................................................CAACGTCACCTGCATTAAGGTTTT............................................................................................................................................	24	1	4	0.25	1	1	0	0	0	0
.................................................................................................ACTCAGCTATCACAGGCAGACAG.........................................................................................................................................................................	23	1	4	0.25	1	0	1	0	0	0
........................................................................................................................GCAAGCCACGTCACTTGCATTAAGGT...............................................................................................................................................	26	1	4	0.25	1	0	1	0	0	0
........................................................................................................................GCAAGCAACGTCACTTGCATTAAGGTTTC............................................................................................................................................	29	1	4	0.25	1	1	0	0	0	0
........................................................................................................................GCAAGCAACGTCACTTGCATTAAGGTTC.............................................................................................................................................	28	1	4	0.25	1	1	0	0	0	0
.................................................................................................................CAGACAGGCAAGCAACGTCACT..........................................................................................................................................................	22	0	4	0.25	1	1	0	0	0	0
............................................................................................................ACAGGCAAACAGGCGAGCAACGTCACT..........................................................................................................................................................	27	2	4	0.25	1	1	0	0	0	0
............................................................................................................................................TAAGGTTTTAATGACGTTCCCAT..............................................................................................................................	23	0	4	0.25	1	1	0	0	0	0
...........................................................................................................................AGCAACGTCACTTGGATTAAGGTTTT............................................................................................................................................	26	1	4	0.25	1	1	0	0	0	0
...........................................................................................................................AGCAACGTCACTTGCATTAAGTTTT.............................................................................................................................................	25	1	4	0.25	1	1	0	0	0	0
..........................................................................................................................AAGCAACGTCACTTGCATTAAGTTT..............................................................................................................................................	25	1	4	0.25	1	1	0	0	0	0
..................................................................................................................................TCACTTGCATTAAGGTTTTAATGACGT....................................................................................................................................	27	0	4	0.25	1	0	1	0	0	0
........................................................................................................................GCAAGCGACGTCACTTGCATTAAGGTT..............................................................................................................................................	27	1	4	0.25	1	1	0	0	0	0
.............................................................................................................CAGGCAGACAGGCAAGCAACGT..............................................................................................................................................................	22	0	4	0.25	1	1	0	0	0	0
...............................................................................................................GGCAGACAGGCAAGCAACGT..............................................................................................................................................................	20	0	4	0.25	1	0	1	0	0	0
..................................................................................................................AGACAGGCAAGCAACGTCACT..........................................................................................................................................................	21	0	4	0.25	1	0	1	0	0	0
..........................................................................................................................AAGCAACGTCACTTGCATTAAGGTTTTG...........................................................................................................................................	28	1	4	0.25	1	1	0	0	0	0
............................................................................................................................GCAACGTCACTTGCATTAAGGTTC.............................................................................................................................................	24	1	4	0.25	1	0	1	0	0	0
..........................................................................................................................TAGCAACGTCACTTGCATTAAGGTTTT............................................................................................................................................	27	1	4	0.25	1	1	0	0	0	0
...........................................................................................................................AATAACGTCACTTGCATTAAGGTTTTAAT.........................................................................................................................................	29	2	4	0.25	1	1	0	0	0	0
.........................................................................................................................CAAGCAACGTCACTTGCATTAAG.................................................................................................................................................	23	0	4	0.25	1	1	0	0	0	0
............................................................................................................................TCAACGTCACTTGCATTAAGGTTTTAAT.........................................................................................................................................	28	1	4	0.25	1	0	1	0	0	0
..............................................................................................................................AACGTGACTTGCATTAAGGTTTTAAT.........................................................................................................................................	26	1	4	0.25	1	0	1	0	0	0
.....................................................................................................................CAGGCAAGCAACGTCACTTGCATTAAGGT...............................................................................................................................................	29	0	4	0.25	1	1	0	0	0	0
.................................................................................................................................GTCACTTGCATTAAGGTTTT............................................................................................................................................	20	0	4	0.25	1	1	0	0	0	0
..................................................................................................................AGACAGGCAAGCAACGTCACTTGCATT....................................................................................................................................................	27	0	4	0.25	1	1	0	0	0	0
........................................................................................................................................GCATTAAGGTTTTAATGACGTTCTCAT..............................................................................................................................	27	1	4	0.25	1	0	1	0	0	0
.....................................................................................................................CAGGCAAGCAACGTCACTTGCATTAAG.................................................................................................................................................	27	0	4	0.25	1	1	0	0	0	0
..................................................................................................................AGATAGGCAAGCAACGTCACTTGCAT.....................................................................................................................................................	26	1	4	0.25	1	1	0	0	0	0
.............................................................................................................................CAACGTCACTTGCATTAAGGTTTTGAT.........................................................................................................................................	27	1	4	0.25	1	0	1	0	0	0
.............................................................................................................GGGGCAGACAGGCAAGCAACGTCACT..........................................................................................................................................................	26	2	4	0.25	1	0	0	1	0	0
...............................................................................................................GGCAGACAGGCAAGCAAC................................................................................................................................................................	18	0	4	0.25	1	0	1	0	0	0
...........................................................................................................................AGCAACGTCGCTTGCATTAAGGTTTT............................................................................................................................................	26	1	4	0.25	1	1	0	0	0	0
....................................................................................................................ACAGGCAAGCAACGTCACTTGCATT....................................................................................................................................................	25	0	4	0.25	1	1	0	0	0	0
............................................................................................................TCAGGCAGACAGGCAAGCAACGTCACT..........................................................................................................................................................	27	1	4	0.25	1	0	1	0	0	0
..............................................................................................................................................AGGTTTGAGTGACGTGCCCAT..............................................................................................................................	21	3	4	0.25	1	1	0	0	0	0
.......................................................................................................................GGCAAGCAACGTCACTTGCATTAAGG................................................................................................................................................	26	0	4	0.25	1	1	0	0	0	0
................................................................................................................GCAGACAGGCAATCAACGTCACTTGCAT.....................................................................................................................................................	28	1	4	0.25	1	1	0	0	0	0
..............................................................................................................................AACGTCACTTGCATTAAGGTTTTAATC........................................................................................................................................	27	1	4	0.25	1	0	1	0	0	0
............................................................................................................ACAGGCAGACAGGCAAGCAACTTCA............................................................................................................................................................	25	1	4	0.25	1	0	1	0	0	0
............................................................................................................................................TAAGGTTTTAATGACGTTCC.................................................................................................................................	20	0	4	0.25	1	1	0	0	0	0
........................................................................................................................GCAAGCAACGTCACTTGCAT.....................................................................................................................................................	20	0	4	0.25	1	1	0	0	0	0
.........................................................................................................................CAAGCAACGTCACTTGCATTAATGTTTT............................................................................................................................................	28	1	4	0.25	1	0	1	0	0	0
............................................................................................................GTTGGCAGACAGGCAAGCAACGTCACTT.........................................................................................................................................................	28	3	4	0.25	1	0	0	1	0	0
.............................................................................................................................CAACGTCACTTCCATTAAGGTTTTAAT.........................................................................................................................................	27	1	4	0.25	1	0	1	0	0	0
...............................................................................................................................ACGTCACTTGCATTAAGGTTTTAA..........................................................................................................................................	24	0	4	0.25	1	1	0	0	0	0
.........................................................................................................................CAAGCAACCTCACTTGCATTAAGGTTTT............................................................................................................................................	28	1	4	0.25	1	0	1	0	0	0
................................................................................................................................CGTCACTTGCATTAAGGT...............................................................................................................................................	18	0	4	0.25	1	1	0	0	0	0
............................................................................................................................................TAAGGTTTTAATGACGTTC..................................................................................................................................	19	0	4	0.25	1	1	0	0	0	0
.........................................................................................................................CAAGCAACGTCACTTGCATTAAGGTTG.............................................................................................................................................	27	1	4	0.25	1	0	1	0	0	0
..................................................................................................................AGACAGGCAAGCAACGTCACTTTCAT.....................................................................................................................................................	26	1	4	0.25	1	1	0	0	0	0
........................................................................................................................GAAAGCAACGTCACTTGCATTAAGGTT..............................................................................................................................................	27	1	4	0.25	1	1	0	0	0	0
.............................................................................................................CAGGCAGACAGGCAAGCAACGTCAC...........................................................................................................................................................	25	0	4	0.25	1	1	0	0	0	0
..............................................................................................TCGACTCAGCTATGACAGGCAGACA..........................................................................................................................................................................	25	1	4	0.25	1	1	0	0	0	0
........................................................................................................................GCAAGCAACGTCACTTGTATTAAGGTTT.............................................................................................................................................	28	1	4	0.25	1	0	1	0	0	0
...........................................................................................................................AGCAACGTCACTTGGATTAAGGT...............................................................................................................................................	23	1	4	0.25	1	1	0	0	0	0
...............................................................................................................................ACGTCACTTGCATTAAGGTTTT............................................................................................................................................	22	0	4	0.25	1	1	0	0	0	0
......................................................................................................................AGGCAAGCAACGTCACTTGCATTAAGG................................................................................................................................................	27	0	4	0.25	1	1	0	0	0	0
.............................................................................................................................CAACCTCACTTGCATTAAGGTTTTAAT.........................................................................................................................................	27	1	4	0.25	1	0	1	0	0	0
.........................................................................................................................TTAGCAACGTCACTTGCATTAAGGTTT.............................................................................................................................................	27	2	4	0.25	1	0	1	0	0	0
...........................................................................................................................TGCAACGTCACTTGCATTAAGGTTTT............................................................................................................................................	26	1	4	0.25	1	0	1	0	0	0
..............................................................................................................AGGCAGACAGGCAAGCAACGTCATT..........................................................................................................................................................	25	1	4	0.25	1	1	0	0	0	0
......................................................................................................................TGGCAAGCAACGTCACTTGCATTAAGGT...............................................................................................................................................	28	1	4	0.25	1	1	0	0	0	0
............................................................................................................ACAGGCAGACAGGCAAGCAACGTCA............................................................................................................................................................	25	0	4	0.25	1	1	0	0	0	0
............................................................................................................ACAGGCAGACAGGCAAGCAACTTCACT..........................................................................................................................................................	27	1	4	0.25	1	0	1	0	0	0
.......................................................................................................................TGCAAGCAACGTCACTTGCATTAAGGTTT.............................................................................................................................................	29	1	4	0.25	1	1	0	0	0	0
..............................................................................................................AGACAGACAGGCAAGCAACGTCACTT.........................................................................................................................................................	26	1	4	0.25	1	0	0	1	0	0
........................................................................................................................................GCATTAAGGTTTTAATGACGTTCCCA...............................................................................................................................	26	0	4	0.25	1	0	1	0	0	0
........................................................................................................................GCGAGCAACGTCACTTGCATTAAGGTTT.............................................................................................................................................	28	1	4	0.25	1	1	0	0	0	0
....................................................................................................................................................................................................TCAAAGGGTAAGATTAAAAAGT.......................................................................	22	0	5	0.20	1	0	1	0	0	0
.............................................................................................................................CAACGTCACTTGCATTAATGTTTTAAT.........................................................................................................................................	27	1	5	0.20	1	0	1	0	0	0
.....................................................................................................................................................................................................CAAAGGGTAAGATTAAAAAGTT......................................................................	22	0	5	0.20	1	1	0	0	0	0
..................................................................................................................................................................................................ATTCAAAGGGTAAGATTAAAAAG........................................................................	23	0	5	0.20	1	1	0	0	0	0
...............................................................................................................................................................AAAAATTTTTGAAGCCGTATCAGCT.........................................................................................................	25	3	6	0.17	1	1	0	0	0	0
......................................................................................................................................................................................................AAAGGGTTAGATTAAAAA.........................................................................	18	1	8	0.13	1	0	0	1	0	0
.............................................................................................................................................................................................................................................................................TGCCACGTCCAATGTTACCG	20	3	20	0.10	2	2	0	0	0	0
..........................................................................................................................................................CGTTCCCATATTTTTGAAGCCGTATC.............................................................................................................	26	0	11	0.09	1	0	1	0	0	0
............................................................AAGGCTGGGGTATTTCATATATAAGA...........................................................................................................................................................................................................	26	0	15	0.07	1	1	0	0	0	0
...............................................................GCTGGGGTATTTCATATATAAGAA..........................................................................................................................................................................................................	24	0	17	0.06	1	0	1	0	0	0
...............................................................GCTGGGGTATTTCATATATAA.............................................................................................................................................................................................................	21	0	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................CGTTCCCATATTTTTGAAGCCGTA...............................................................................................................	24	0	20	0.05	1	1	0	0	0	0
..........................................................................................................................................................................................................................................TTGTCCTAGCCTTGCGTTG....................................	19	3	20	0.05	1	1	0	0	0	0
..............................................................GGCTGGGGTATTTCATATAT...............................................................................................................................................................................................................	20	0	20	0.05	1	1	0	0	0	0
................................................................................................................................CGTCATTTTCATTAAGGGTTT............................................................................................................................................	21	3	20	0.05	1	0	0	0	0	1
..........................................................................................................................................................CGTTCCCATATTTTTGAAGCCGT................................................................................................................	23	0	20	0.05	1	0	1	0	0	0

ACTTCCTCGTCTAACGGGAGTCGTCTCTTCGTAAATAAGCTTAACGCCTCCATGCATTTAAAGGCTGGGGTATTTCATATATAAGAACTACTCTTCGACTCAGCTATAACAGGCAGACAGGCAAGCAACGTCACTTGCATTAAGGTTTTAATGACGTTCCCATATTTTTGAAGCCGTATCAGCTTCAAAGGTAGATTCAAAGGGTAAGATTAAAAAGTTCAAAAAGAAAGAGGGTTGTCCTGGCCTTCCGTTTCCGTCTTGAACACGTCAGCCACGTCCAAGGTTACGG
********************************************************************************************************************************.............((.(((((((((..............))))))))).))**************************************************************************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M045
female body

V118
embryo

V117
male body

M020
head

V119
head

...........................................................................................................................AGCAACGTCACTTGCATTAAGGTTTT............................................................................................................................................

32.50

130

117

..............................................................................................................................AACGTCACTTGCATTAAGGTTTTAAT.........................................................................................................................................

31.25

125

........................................................................................................................GCAAGCAACGTCACTTGCATTAAGGT...............................................................................................................................................

30.50

122

106

............................................................................................................................GCAACGTCACTTGCATTAAGGTTTT............................................................................................................................................

26.25

105

.............................................................................................................................CAACGTCACTTGCATTAAGGTTTTAAT.........................................................................................................................................

13.75

........................................................................................................................GCAAGCAACGTCACTTGCATTAAGGTTT.............................................................................................................................................

12.50

........................................................................................................................GCAAGCAACGTCACTTGCATTAAGGTT..............................................................................................................................................

12.25

............................................................................................................ACAGGCAGACAGGCAAGCAACGTCACT..........................................................................................................................................................

11.75

.........................................................................................................................CAAGCAACGTCACTTGCATTAAGGTTTT............................................................................................................................................

11.75

.........................................................................................................................CAAGCAACGTCACTTGCATTAAGGTTT.............................................................................................................................................

10.00

..........................................................................................................................AAGCAACGTCACTTGCATTAAGGTTTT............................................................................................................................................

8.75

................................................................................................................GCAGACAGGCAAGCAACGTCACTTGCAT.....................................................................................................................................................

8.75

...........................................................................................................................AGCAACGTCACTTGCATTAAGGTTT.............................................................................................................................................

8.00

................................................................................................................................CGTCACTTGCATTAAGGTTTTAAT.........................................................................................................................................

6.75

.............................................................................................................................CAACGTCACTTGCATTAAGGTTTT............................................................................................................................................

6.00

.............................................................................................................CAGGCAGACAGGCAAGCAACGTCACT..........................................................................................................................................................

5.75

........................................................................................................................GCAAGCAACGTCACTTGCATTAAGGTTTT............................................................................................................................................

5.25

........................................................................................................................................GCATTAAGGTTTTAATGACGTTCCCAT..............................................................................................................................

4.75

..............................................................................................................AGGCAGACAGGCAAGCAACGTCACT..........................................................................................................................................................

4.50

..........................................................................................................................AAGCAACGTCACTTGCATTAAGGTTT.............................................................................................................................................

4.25

..................................................................................................................AGACAGGCAAGCAACGTCACTTGCAT.....................................................................................................................................................

4.00

.........................................................................................................................CAAGCAACGTCACTTGCATTAAGGT...............................................................................................................................................

4.00

...............................................................................................................GGCAGACAGGCAAGCAACGTCACT..........................................................................................................................................................

3.75

........................................................................................................................GCAAGCAACGTCACTTGCATTAAGG................................................................................................................................................

3.75

...............................................................................................................................ACGTCACTTGCATTAAGGTTTTAAT.........................................................................................................................................

3.75

............................................................................................................ACAGGCAGACAGGCAAGCAACGTCACTT.........................................................................................................................................................

3.50

........................................................................................................................................................................................TCAAAGGTAGATTCAAAGGGTAAGAT...............................................................................

3.50

.................................................................................................................CAGACAGGCAAGCAACGTCACTTGCAT.....................................................................................................................................................

3.00

.....................CGTCTCTTCGTAAATAAGCTTAACGCCT................................................................................................................................................................................................................................................

3.00

..............................................................................................................................AACGTCACTTGCATTAAGGTTTTAA..........................................................................................................................................

3.00

................................................................................................................GCAGACAGGCAAGCAACGTCACT..........................................................................................................................................................

2.75

............................................................................................................................GCAACGTCACTTGCATTAAGGTTT.............................................................................................................................................

2.75

...............................................................................................................GGCAGACAGGCAAGCAACGTCACTT.........................................................................................................................................................

2.50

..............................................................................................................AGGCAGACAGGCAAGCAACGTCACTT.........................................................................................................................................................

2.00

...........................................................................................................................................................................................................................................TGTCCTGGCCTTCCGTTTCCGTCTT.............................

2.00

.......................................................................................................................GGCAAGCAACGTCACTTGCATTAAGGT...............................................................................................................................................

2.00

.........................................................................................................................CAAGCAACGTCACTTGCATTAAGGTT..............................................................................................................................................

2.00

......................................................................................................................AGGCAAGCAACGTCACTTGCATTAAGGT...............................................................................................................................................

2.00

.............................CGTAAATAAGCTTAACGCCTCCATGCAT........................................................................................................................................................................................................................................

2.00

...........................................................................................................................AGCAACGTCACTTGCATTAAGGTT..............................................................................................................................................

1.50

1.33

......................................................................................................................................................................TTTGAAGCCGTATCAGCTTCAAAGGT.................................................................................................

1.33

.......................................................................................................................................TGCATTAAGGTTTTAATGACGTTCCCAT..............................................................................................................................

1.25

..........................................................................................................................AAGCAACGTCACTTGCATTAAGGTT..............................................................................................................................................

1.25

.............................................................................TTTATAAGAACTACTCTTCGACTCAGC.........................................................................................................................................................................................

1.00

......................................................................................................................................................................................TTTCAAAGGTAGATTCAAAGGGTAAGAT...............................................................................

1.00

.........................................................................................ACTCTTCGACTCAGCTATAACAGGCAGA............................................................................................................................................................................

1.00

...............................................................................................CGACTCAGCTATAACAGGCAGA............................................................................................................................................................................

1.00

..............................................................................................................................AACGTCACTTGCATTAAGGTTT.............................................................................................................................................

1.00

........................CTCTTCGTAAATAGGCTTAACGCCT................................................................................................................................................................................................................................................

1.00

...............................................................................................................GGCAGACAGGCAAGCAACGTCAC...........................................................................................................................................................

1.00

............................................................................................................................................................................................................................................GTCCTCGCCTTCCGTTTCCGTCTGGAC..........................

1.00

...........................................................................................................................................................................AGCCGTATCAGCTTCAAAGGTAGAT.............................................................................................

1.00

........................................................................................................................................................................................................................................GGTTGTCCTGTCCTTCCGTTTCCGT................................

1.00

............................TCGTAAATAAGCTTAACGCCTCCATGCA.........................................................................................................................................................................................................................................

1.00

...................................................................................AGAACTACTCTTCGACTCAGCTATAACA..................................................................................................................................................................................

1.00

...................................................................................................................GACAGGCAAGCAACGTCACTTGCAT.....................................................................................................................................................

1.00

.............................................................................................................................CAACGTCACTTGCATTAAGGTTTTAA..........................................................................................................................................

1.00

..TTCCTCGTCTAACGGGAGTCGTCTCT.....................................................................................................................................................................................................................................................................

1.00

...............................................................................................CGACTCAGCTATAACAGGCAGACAG.........................................................................................................................................................................

1.00

....................................................................................................................ACAGGCAAGCAACGTCACTTGCAT.....................................................................................................................................................

1.00

...............GGGAGTCGTCTCTTCGTAAATAAGCTT.......................................................................................................................................................................................................................................................

1.00

.................................................................................................................CAGACAGGCAAGCAACGTCACTT.........................................................................................................................................................

0.75

.............................................................................................................................CAACGTCACTTGCATTAAGGTT..............................................................................................................................................

0.75

............................................................................................................ACAGGCAGACAGGCAAGCAACGT..............................................................................................................................................................

0.75

................................................................................................................GCAGACAGGCAAGCAACGTCACTTGCA......................................................................................................................................................

0.75

................................................................................................................GCAGACAGGCAAGCAACGTCAC...........................................................................................................................................................

0.75

............................................................................................................ACAGGCAGACAGGCAAGCAACGTCAC...........................................................................................................................................................

0.75

.................................................................................................................................GTCACTTGCATTAAGGTTTTAATGACGT....................................................................................................................................

0.75

.............................................................................................................CAGGCAGACAGGCAAGCAACGTCACTT.........................................................................................................................................................

0.75

..............................................................................................................................AACGTCACTTGCATTAAGGTTTT............................................................................................................................................

0.75

..........................................................................................................................................................................................AAAGGTAGATTCAAAGGGTAAGAT...............................................................................

0.50

............................................................................................................................GCAACGTCACTTGCATTAAGGTT..............................................................................................................................................

0.50

...................................................................................................................................................................................CAGCTTCAAAGGTAGATTCAAAGGGT....................................................................................

0.50

...........................................................................................................................................................................................................................................TGTCCTTGCCTTCCGTTTCCGTCTT.............................

0.50

........................................................................................................................GCAAGCGACGTCACTTGCATTAAGGT...............................................................................................................................................

0.50

.........................................................................................................................................................................................CAAAGGTAGATTCAAAGGGTAAGAT...............................................................................

0.50

................................................................................................................................CGTCACTTGCATTAAGGTTT.............................................................................................................................................

0.50

..........................................................................................................................AAGCAACGTCACTTGCATTAAGGT...............................................................................................................................................

0.50

................................................................................................................GCAGACAGGCAAGCAACGTCACTT.........................................................................................................................................................

0.50

...............................................................................................................GGCAGACAGGCAAGCAACGTCACTTG........................................................................................................................................................

0.50

.................................................................................................................CAGACAGGCAAGCAACGTCACTTGCATT....................................................................................................................................................

0.50

........................................................................................................................GCAAGCAACGTCACTTGCATTAAG.................................................................................................................................................

0.50

.................................................CCATGCATTTAAAGGCTGGGGTATTT......................................................................................................................................................................................................................

0.50

.......................................................................................................................GGCAAGCAACGTCACTTGCATTAAGGTT..............................................................................................................................................

0.50

.........................................................................................................................CAAGCAACGTCACTTGAATTAAGGTTTT............................................................................................................................................

0.50

.............................................................................................................................AAACGTCACTTGCATTAAGGTTTTAAT.........................................................................................................................................

0.50

.............................................................................................................................CAACGTCACTTGCATTAAGGTTT.............................................................................................................................................

0.50

.........................................................................................................................................................................ATAGCCGTATCAGCTTCAAAGGTAGAT.............................................................................................

0.50

..............................................................................................................AGGCAGACAGGCAAGCAACGT..............................................................................................................................................................

0.50

.............................................................................................................................TAACGTCACTTGCATTAAGGTTTTAAT.........................................................................................................................................

0.50

...................................................................................AGGACTAATCTTCGACTCA...........................................................................................................................................................................................

0.33

........................................TTAACGCCTCCATGCATTTAAAGGC................................................................................................................................................................................................................................

0.33

.......................................................................................................................................................................TTGAAGCCGTATCAGCTTCAAAGGT.................................................................................................

0.33

.....................................................GCATTTAAAGGTTGGGGTATTTCATAT.................................................................................................................................................................................................................

0.33

.....................................................GCATTTAAAGGTTGGGGTATTTCAT...................................................................................................................................................................................................................

0.33

...........................................................................................................................................................GTTCCCATATTTTTGAAGCCGTATCA............................................................................................................

0.33

........................................................................................................................................................................TGAAGCCGTATCAGCTTCAAAGGT.................................................................................................

0.33

...............................................................................................................................ACGTCACTTGCATTAAGGTT..............................................................................................................................................

0.25

................................................................................................................GCAGACAGGCAAGCAAAGTCACTTGCA......................................................................................................................................................

0.25

.........................................................................................................................AAAGCAACGTCACTTGCATTAAGGTTT.............................................................................................................................................

0.25

..............................................................................................................ACGCAGACAGGCAAGCAACGTCACTT.........................................................................................................................................................

0.25

..............................................................................................................................AACGTCACTTGCATTAAGCTTTTAAT.........................................................................................................................................

0.25

.............................................................................................................................CAACGTCACCTGCATTAAGGTTTT............................................................................................................................................

0.25

.................................................................................................ACTCAGCTATCACAGGCAGACAG.........................................................................................................................................................................

0.25

........................................................................................................................GCAAGCCACGTCACTTGCATTAAGGT...............................................................................................................................................

0.25

........................................................................................................................GCAAGCAACGTCACTTGCATTAAGGTTTC............................................................................................................................................

0.25

........................................................................................................................GCAAGCAACGTCACTTGCATTAAGGTTC.............................................................................................................................................

0.25

.................................................................................................................CAGACAGGCAAGCAACGTCACT..........................................................................................................................................................

0.25

............................................................................................................ACAGGCAAACAGGCGAGCAACGTCACT..........................................................................................................................................................

0.25

............................................................................................................................................TAAGGTTTTAATGACGTTCCCAT..............................................................................................................................

0.25

...........................................................................................................................AGCAACGTCACTTGGATTAAGGTTTT............................................................................................................................................

0.25

...........................................................................................................................AGCAACGTCACTTGCATTAAGTTTT.............................................................................................................................................

0.25

..........................................................................................................................AAGCAACGTCACTTGCATTAAGTTT..............................................................................................................................................

0.25

..................................................................................................................................TCACTTGCATTAAGGTTTTAATGACGT....................................................................................................................................

0.25

........................................................................................................................GCAAGCGACGTCACTTGCATTAAGGTT..............................................................................................................................................

0.25

.............................................................................................................CAGGCAGACAGGCAAGCAACGT..............................................................................................................................................................

0.25

...............................................................................................................GGCAGACAGGCAAGCAACGT..............................................................................................................................................................

0.25

..................................................................................................................AGACAGGCAAGCAACGTCACT..........................................................................................................................................................

0.25

..........................................................................................................................AAGCAACGTCACTTGCATTAAGGTTTTG...........................................................................................................................................

0.25

............................................................................................................................GCAACGTCACTTGCATTAAGGTTC.............................................................................................................................................

0.25

..........................................................................................................................TAGCAACGTCACTTGCATTAAGGTTTT............................................................................................................................................

0.25

...........................................................................................................................AATAACGTCACTTGCATTAAGGTTTTAAT.........................................................................................................................................

0.25

.........................................................................................................................CAAGCAACGTCACTTGCATTAAG.................................................................................................................................................

0.25

............................................................................................................................TCAACGTCACTTGCATTAAGGTTTTAAT.........................................................................................................................................

0.25

..............................................................................................................................AACGTGACTTGCATTAAGGTTTTAAT.........................................................................................................................................

0.25

.....................................................................................................................CAGGCAAGCAACGTCACTTGCATTAAGGT...............................................................................................................................................

0.25

.................................................................................................................................GTCACTTGCATTAAGGTTTT............................................................................................................................................

0.25

..................................................................................................................AGACAGGCAAGCAACGTCACTTGCATT....................................................................................................................................................

0.25

........................................................................................................................................GCATTAAGGTTTTAATGACGTTCTCAT..............................................................................................................................

0.25

.....................................................................................................................CAGGCAAGCAACGTCACTTGCATTAAG.................................................................................................................................................

0.25

..................................................................................................................AGATAGGCAAGCAACGTCACTTGCAT.....................................................................................................................................................

0.25

.............................................................................................................................CAACGTCACTTGCATTAAGGTTTTGAT.........................................................................................................................................

0.25

.............................................................................................................GGGGCAGACAGGCAAGCAACGTCACT..........................................................................................................................................................

0.25

...............................................................................................................GGCAGACAGGCAAGCAAC................................................................................................................................................................

0.25

...........................................................................................................................AGCAACGTCGCTTGCATTAAGGTTTT............................................................................................................................................

0.25

....................................................................................................................ACAGGCAAGCAACGTCACTTGCATT....................................................................................................................................................

0.25

............................................................................................................TCAGGCAGACAGGCAAGCAACGTCACT..........................................................................................................................................................

0.25

..............................................................................................................................................AGGTTTGAGTGACGTGCCCAT..............................................................................................................................

0.25

.......................................................................................................................GGCAAGCAACGTCACTTGCATTAAGG................................................................................................................................................

0.25

................................................................................................................GCAGACAGGCAATCAACGTCACTTGCAT.....................................................................................................................................................

0.25

..............................................................................................................................AACGTCACTTGCATTAAGGTTTTAATC........................................................................................................................................

0.25

............................................................................................................ACAGGCAGACAGGCAAGCAACTTCA............................................................................................................................................................

0.25

............................................................................................................................................TAAGGTTTTAATGACGTTCC.................................................................................................................................

0.25

........................................................................................................................GCAAGCAACGTCACTTGCAT.....................................................................................................................................................

0.25

.........................................................................................................................CAAGCAACGTCACTTGCATTAATGTTTT............................................................................................................................................

0.25

............................................................................................................GTTGGCAGACAGGCAAGCAACGTCACTT.........................................................................................................................................................

0.25

.............................................................................................................................CAACGTCACTTCCATTAAGGTTTTAAT.........................................................................................................................................

0.25

...............................................................................................................................ACGTCACTTGCATTAAGGTTTTAA..........................................................................................................................................

0.25

.........................................................................................................................CAAGCAACCTCACTTGCATTAAGGTTTT............................................................................................................................................

0.25

................................................................................................................................CGTCACTTGCATTAAGGT...............................................................................................................................................

0.25

............................................................................................................................................TAAGGTTTTAATGACGTTC..................................................................................................................................

0.25

.........................................................................................................................CAAGCAACGTCACTTGCATTAAGGTTG.............................................................................................................................................

0.25

..................................................................................................................AGACAGGCAAGCAACGTCACTTTCAT.....................................................................................................................................................

0.25

........................................................................................................................GAAAGCAACGTCACTTGCATTAAGGTT..............................................................................................................................................

0.25

.............................................................................................................CAGGCAGACAGGCAAGCAACGTCAC...........................................................................................................................................................

0.25

..............................................................................................TCGACTCAGCTATGACAGGCAGACA..........................................................................................................................................................................

0.25

........................................................................................................................GCAAGCAACGTCACTTGTATTAAGGTTT.............................................................................................................................................

0.25

...........................................................................................................................AGCAACGTCACTTGGATTAAGGT...............................................................................................................................................

0.25

...............................................................................................................................ACGTCACTTGCATTAAGGTTTT............................................................................................................................................

0.25

......................................................................................................................AGGCAAGCAACGTCACTTGCATTAAGG................................................................................................................................................

0.25

.............................................................................................................................CAACCTCACTTGCATTAAGGTTTTAAT.........................................................................................................................................

0.25

.........................................................................................................................TTAGCAACGTCACTTGCATTAAGGTTT.............................................................................................................................................

0.25

...........................................................................................................................TGCAACGTCACTTGCATTAAGGTTTT............................................................................................................................................

0.25

..............................................................................................................AGGCAGACAGGCAAGCAACGTCATT..........................................................................................................................................................

0.25

......................................................................................................................TGGCAAGCAACGTCACTTGCATTAAGGT...............................................................................................................................................

0.25

............................................................................................................ACAGGCAGACAGGCAAGCAACGTCA............................................................................................................................................................

0.25

............................................................................................................ACAGGCAGACAGGCAAGCAACTTCACT..........................................................................................................................................................

0.25

.......................................................................................................................TGCAAGCAACGTCACTTGCATTAAGGTTT.............................................................................................................................................

0.25

..............................................................................................................AGACAGACAGGCAAGCAACGTCACTT.........................................................................................................................................................

0.25

........................................................................................................................................GCATTAAGGTTTTAATGACGTTCCCA...............................................................................................................................

0.25

........................................................................................................................GCGAGCAACGTCACTTGCATTAAGGTTT.............................................................................................................................................

0.25

....................................................................................................................................................................................................TCAAAGGGTAAGATTAAAAAGT.......................................................................

0.20

.............................................................................................................................CAACGTCACTTGCATTAATGTTTTAAT.........................................................................................................................................

0.20

.....................................................................................................................................................................................................CAAAGGGTAAGATTAAAAAGTT......................................................................

0.20

..................................................................................................................................................................................................ATTCAAAGGGTAAGATTAAAAAG........................................................................

0.20

...............................................................................................................................................................AAAAATTTTTGAAGCCGTATCAGCT.........................................................................................................

0.17

......................................................................................................................................................................................................AAAGGGTTAGATTAAAAA.........................................................................

0.13

0.10

..........................................................................................................................................................CGTTCCCATATTTTTGAAGCCGTATC.............................................................................................................

0.09

............................................................AAGGCTGGGGTATTTCATATATAAGA...........................................................................................................................................................................................................

0.07

...............................................................GCTGGGGTATTTCATATATAAGAA..........................................................................................................................................................................................................

0.06

...............................................................GCTGGGGTATTTCATATATAA.............................................................................................................................................................................................................

0.05

..........................................................................................................................................................CGTTCCCATATTTTTGAAGCCGTA...............................................................................................................

0.05

..........................................................................................................................................................................................................................................TTGTCCTAGCCTTGCGTTG....................................

0.05

..............................................................GGCTGGGGTATTTCATATAT...............................................................................................................................................................................................................

0.05

................................................................................................................................CGTCATTTTCATTAAGGGTTT............................................................................................................................................

0.05

..........................................................................................................................................................CGTTCCCATATTTTTGAAGCCGT................................................................................................................

0.05

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004851:536128-536416 -	dwi_2307	TGAAGGAGCAGATTGCCCTCAGCAGAGAAGCATTTATTCGAATT--G-------CGGAGGTACGTAA---------------ATTTCCGACCCCATAAAGTAT--ATATTCTTGATGAGA------AGCTGAGTCGATAT-----TGTCCGTCTG-----TCCGTTCGTTGCA----GT------GAACGT-----AATTC-------CAAA-ATTAC----TGCAAGGGTATAAAAACTTCGGCATAG-----TC-GAAGTT------TCCATCTAAGTTTCCC-----ATTCTAATTTTTCAAGTTTTTCTTTCTCCCAACAGGACCGGAAGGCAAAGGCAGAACTTGTGCAGTCGGTGCAGGTTCCAATGCC
droVir3	scaffold_12954:437967-438139 -		GT--------------------------------------ATTTGTGCAAAATCCAAATGTATGTAAGAGGCAGAAGGAAGCATCTCCGACCCCATAAAGTAT--ATATTCTTGATCAGCACCAATAGCCCAGTCGATCTAGCCATGTCCGTCTG-----CCTGTCTGTCCGTATGTAT------GAACGAAAGG-ATCT--------CAGAACCTATAAGA-G-----CTAAAGA--C---------------------------------------------------------------------TT-----------------------------------------------------------------
droMoj3	scaffold_6680:24262499-24262627 -		----------------------------------------------------------------------------------------GACCCCATAAAGTAT--ATATTCTTGATCAGGACGACGAGCTGAGTCGATATAGCCCTGTCCGTCTG-----TATGA----------------------GCAAAAGG-ATTT--------TAGAAGATATTAGA-G-----CTAGAGAAATTTGGCATGCA--TACT--------------------------------------CGT---------ATTTT-----------------------------------------------------------------
droGri2	scaffold_14830:1057245-1057324 +		----------------------------------------------------------------------------------ATCTCCGACCCCATAAAGGAT--ATATTCTTGATCAGGGTTAACAGCCGAGTCGATATAGCCATGTCCGTCTG-----TCCGCCCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5	Unknown_group_221:37865-37943 -		-----------------------------------------------------------------------------------TTTCCGACCCCATAAAGTAT--ATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCTG-----TCCGTCCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_236:29830-29939 -		-----------------------------------------------------------------------------------TTTCCGACCCCATAAAGTAT--ATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCCGTCTG-----TCCGTCCCC--------TT------CAGCGCCTAA-TGCT--------CAAAGACTATAAGA-G-------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13272:274297-274445 -		----------------------------------------------------------------------------------ATCTCCGACCCTAAAAAGTAT--ATATTTTTGATCAGGATTACCTCCTGAGTCGATATGAGCATTTCCGTCTG-----TCCGTCTGTCGGA----CT------GCGACTC---------------A-----------AC-TGCAAGGGTATATAAATTTCGGCTCCG-----TCCGAAGTTAGCTTTCC-------------------TTTCTTG-----------TT-----------------------------------------------------------------
droBip1	scf7180000394843:19671-19788 -		----------------------------------------------------------------------------------ATCTCCGACCCTATAAAGTAT--ATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTG-----TCCGTATGTCTGTCAGTTTCTACGCGAACTC-----AGTT--------TTAAAGCTATT----G-------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302205:20930-21043 -		GCAG------------TGAAGGAG---------------------------------AAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTAT--ATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTG-----TCTGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000490142:14505-14683 +		TTAC------------CCATAGAGTAAAAAGATATATTGTATTCGTT-------CAAAAGTATGTAACAGTTAGAAGGAAGCATTTCCGACCCTATAAAGTAT--ATACTCTTGATCA---------GCCGAGTTGATCTAGGCATGTCCGTTTG-----GCTATTCGTCTGT----AT------GAACATTGAG-ATCT--------TCAAAACTATAAAA-G-----CTAAAGC--A---------------------------------------------------------------------TA-----------------------------------------------------------------
droRho1	scf7180000763370:441-624 +		---------------------------------------------------------AAGTGTGTAACA------------CATTTCCGAACCTATAAAGAAT--ATATTCTTGATCAGCATCACCAGGCGAAATTATA-----ACTTCTTTGCTTCTAACA----TATACAC----AT------GTACTCCAAGACATTCCTTACCA-----------GG-TGCAAGGGTATATAAACTTCGGG-TTG-----TC-GAAGTT------------TGAGTTCTTC-----ATTGTTATTTTTTAAATATT-----------------------------------------------------------------
droBia1	scf7180000301495:1059957-1060159 +		TTAC------------TCGTAGAGTAAAAGGGTTTACTAGATTCGTC-------GGAAAGTATGTAACAGGCAAAAGGAAACGTTTCCGACCCCATAATGTAT--ATATTCTTGATCA------CTAGCCGAGTCGATCTAGCCATGTCCGTCTG-----TCTGTCTGTCCGT----AT------GAACTCTAAG-ATTT--------CGAAAACTATAGGA-G-----CTAGGAC-----------AG-----TT-AAACTT------CCC------------------ATGCAG---------ATTCC-----------------------------------------------------------------
droTak1	scf7180000410798:23694-23867 -		TTAC------------TCACAGAGTAAAAGGATATATTGTATTCGTG-------CAAAAGTATGTAACAGGGAGAAGGAAGAGTTTCCGACCCTATAAAGTAT--ATATTCTTGATCAGGTTCACTAGCCGAGTCGATCTAGCCATGTCTGCCTG-----TCTGTCCCA--------T----------------------------------ACC---------------TATAAAGATTTCGGAAAAG-----TA-GAAA-----------------------------------------------TT-----------------------------------------------------------------
droEug1	scf7180000409175:16320-16398 -		-----------------------------------------------------------------------------------TTTCCGACCCTATAAAGTAT--ATATTCTTGATCACAATCAGAAGCGAAGCCGATTTAGCCATGTCCGTCTG-----TTCGTCCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_6:481487-481600 -		-----------------------------------------------------------------------------------TTTCCGACCACATAAAGTGT--ATATTCTTTATCA------ATAGCCGAGTCGATCTAGCCATGTCCGTATG-----TCCGTCTGTCCGT----AT------GAACGTCGAT-ATCC--------CAGGAACTCTA-AA-G-----CTAGAAA-------------------------------------------------------------------------------------------------------------------------------------------
droYak3	v2_chrUn_5709:138087-138213 +		T------------------------AAAGGGGTATATTAGATTCGTT-------GAAAAGCATGTAACAGGCAGAAGGAAGCGTTTTCGACCATACAAAATATATATATTCTTGATCAGG------AGCCGAGTCGATCTGGCCATGTCCGTCTG-----TCCGTCCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4929:18377230-18377389 +		-----------------------------------------------------------------------------------TTTCCGACCCTATAAAGTATATATATTCTTGACCAGAATCACTAGCCGAGTCGATCTGGCCATGTCTGTCTG----ATTTGTCCAA--------A-------ATAAACCAGGAAATTA-------TGAA-ATTG-----TGTGCGGGTAT--------CGGA-TAGTC---GA-GAAACT------------CGAGTACTCCCTCCTGTTCTGG---------T-TT-----------------------------------------------------------------

Species

Coordinate

Alignment

droWil2

scf2_1100000004851:536128-536416 -

dwi_2307

TGAAGGAGCAGATTGCCCTCAGCAGAGAAGCATTTATTCGAATT--G-------CGGAGGTACGTAA---------------ATTTCCGACCCCATAAAGTAT--ATATTCTTGATGAGA------AGCTGAGTCGATAT-----TGTCCGTCTG-----TCCGTTCGTTGCA----GT------GAACGT-----AATTC-------CAAA-ATTAC----TGCAAGGGTATAAAAACTTCGGCATAG-----TC-GAAGTT------TCCATCTAAGTTTCCC-----ATTCTAATTTTTCAAGTTTTTCTTTCTCCCAACAGGACCGGAAGGCAAAGGCAGAACTTGTGCAGTCGGTGCAGGTTCCAATGCC

droVir3

scaffold_12954:437967-438139 -

GT--------------------------------------ATTTGTGCAAAATCCAAATGTATGTAAGAGGCAGAAGGAAGCATCTCCGACCCCATAAAGTAT--ATATTCTTGATCAGCACCAATAGCCCAGTCGATCTAGCCATGTCCGTCTG-----CCTGTCTGTCCGTATGTAT------GAACGAAAGG-ATCT--------CAGAACCTATAAGA-G-----CTAAAGA--C---------------------------------------------------------------------TT-----------------------------------------------------------------

droMoj3

scaffold_6680:24262499-24262627 -

----------------------------------------------------------------------------------------GACCCCATAAAGTAT--ATATTCTTGATCAGGACGACGAGCTGAGTCGATATAGCCCTGTCCGTCTG-----TATGA----------------------GCAAAAGG-ATTT--------TAGAAGATATTAGA-G-----CTAGAGAAATTTGGCATGCA--TACT--------------------------------------CGT---------ATTTT-----------------------------------------------------------------

droGri2

scaffold_14830:1057245-1057324 +

----------------------------------------------------------------------------------ATCTCCGACCCCATAAAGGAT--ATATTCTTGATCAGGGTTAACAGCCGAGTCGATATAGCCATGTCCGTCTG-----TCCGCCCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

dp5

Unknown_group_221:37865-37943 -

-----------------------------------------------------------------------------------TTTCCGACCCCATAAAGTAT--ATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCTG-----TCCGTCCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

droPer2

scaffold_236:29830-29939 -

-----------------------------------------------------------------------------------TTTCCGACCCCATAAAGTAT--ATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCCGTCTG-----TCCGTCCCC--------TT------CAGCGCCTAA-TGCT--------CAAAGACTATAAGA-G-------------------------------------------------------------------------------------------------------------------------------------------------------

droAna3

scaffold_13272:274297-274445 -

----------------------------------------------------------------------------------ATCTCCGACCCTAAAAAGTAT--ATATTTTTGATCAGGATTACCTCCTGAGTCGATATGAGCATTTCCGTCTG-----TCCGTCTGTCGGA----CT------GCGACTC---------------A-----------AC-TGCAAGGGTATATAAATTTCGGCTCCG-----TCCGAAGTTAGCTTTCC-------------------TTTCTTG-----------TT-----------------------------------------------------------------

droBip1

scf7180000394843:19671-19788 -

----------------------------------------------------------------------------------ATCTCCGACCCTATAAAGTAT--ATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTG-----TCCGTATGTCTGTCAGTTTCTACGCGAACTC-----AGTT--------TTAAAGCTATT----G-------------------------------------------------------------------------------------------------------------------------------------------------------

droKik1

scf7180000302205:20930-21043 -

GCAG------------TGAAGGAG---------------------------------AAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTAT--ATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTG-----TCTGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

droEle1

scf7180000490142:14505-14683 +

TTAC------------CCATAGAGTAAAAAGATATATTGTATTCGTT-------CAAAAGTATGTAACAGTTAGAAGGAAGCATTTCCGACCCTATAAAGTAT--ATACTCTTGATCA---------GCCGAGTTGATCTAGGCATGTCCGTTTG-----GCTATTCGTCTGT----AT------GAACATTGAG-ATCT--------TCAAAACTATAAAA-G-----CTAAAGC--A---------------------------------------------------------------------TA-----------------------------------------------------------------

droRho1

scf7180000763370:441-624 +

---------------------------------------------------------AAGTGTGTAACA------------CATTTCCGAACCTATAAAGAAT--ATATTCTTGATCAGCATCACCAGGCGAAATTATA-----ACTTCTTTGCTTCTAACA----TATACAC----AT------GTACTCCAAGACATTCCTTACCA-----------GG-TGCAAGGGTATATAAACTTCGGG-TTG-----TC-GAAGTT------------TGAGTTCTTC-----ATTGTTATTTTTTAAATATT-----------------------------------------------------------------

droBia1

scf7180000301495:1059957-1060159 +

TTAC------------TCGTAGAGTAAAAGGGTTTACTAGATTCGTC-------GGAAAGTATGTAACAGGCAAAAGGAAACGTTTCCGACCCCATAATGTAT--ATATTCTTGATCA------CTAGCCGAGTCGATCTAGCCATGTCCGTCTG-----TCTGTCTGTCCGT----AT------GAACTCTAAG-ATTT--------CGAAAACTATAGGA-G-----CTAGGAC-----------AG-----TT-AAACTT------CCC------------------ATGCAG---------ATTCC-----------------------------------------------------------------

droTak1

scf7180000410798:23694-23867 -

TTAC------------TCACAGAGTAAAAGGATATATTGTATTCGTG-------CAAAAGTATGTAACAGGGAGAAGGAAGAGTTTCCGACCCTATAAAGTAT--ATATTCTTGATCAGGTTCACTAGCCGAGTCGATCTAGCCATGTCTGCCTG-----TCTGTCCCA--------T----------------------------------ACC---------------TATAAAGATTTCGGAAAAG-----TA-GAAA-----------------------------------------------TT-----------------------------------------------------------------

droEug1

scf7180000409175:16320-16398 -

-----------------------------------------------------------------------------------TTTCCGACCCTATAAAGTAT--ATATTCTTGATCACAATCAGAAGCGAAGCCGATTTAGCCATGTCCGTCTG-----TTCGTCCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

droSec2

scaffold_6:481487-481600 -

-----------------------------------------------------------------------------------TTTCCGACCACATAAAGTGT--ATATTCTTTATCA------ATAGCCGAGTCGATCTAGCCATGTCCGTATG-----TCCGTCTGTCCGT----AT------GAACGTCGAT-ATCC--------CAGGAACTCTA-AA-G-----CTAGAAA-------------------------------------------------------------------------------------------------------------------------------------------

droYak3

v2_chrUn_5709:138087-138213 +

T------------------------AAAGGGGTATATTAGATTCGTT-------GAAAAGCATGTAACAGGCAGAAGGAAGCGTTTTCGACCATACAAAATATATATATTCTTGATCAGG------AGCCGAGTCGATCTGGCCATGTCCGTCTG-----TCCGTCCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

droEre2

scaffold_4929:18377230-18377389 +

-----------------------------------------------------------------------------------TTTCCGACCCTATAAAGTATATATATTCTTGACCAGAATCACTAGCCGAGTCGATCTGGCCATGTCTGTCTG----ATTTGTCCAA--------A-------ATAAACCAGGAAATTA-------TGAA-ATTG-----TGTGCGGGTAT--------CGGA-TAGTC---GA-GAAACT------------CGAGTACTCCCTCCTGTTCTGG---------T-TT-----------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

TGAAGGAGCAGATTGCCCTCAGCAGAGAAGCATTTATTCGAATT--G-------CGGAGGTACGTAA---------------ATTTCCGACCCCATAAAGTAT--ATATTCTTGATGAGA------AGCTGAGTCGATAT-----TGTCCGTCTG-----TCCGTTCGTTGCA----GT------GAACGT-----AATTC-------CAAA-ATTAC----TGCAAGGGTATAAAAACTTCGGCATAG-----TC-GAAGTT------TCCATCTAAGTTTCCC-----ATTCTAATTTTTCAAGTTTTTCTTTCTCCCAACAGGACCGGAAGGCAAAGGCAGAACTTGTGCAGTCGGTGCAGGTTCCAATGCC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................................................................................................................................................................................................................................................................................................AAAGGCAGAACTTGTGCAGTCGG................	23	1	4.00	4	0	4	0	0	0
...............................................................................................................................................................................................................................................................................................................................................CAAAGGCAGAACTTGTGCAGTCGG................	24	1	2.00	2	0	1	0	1	0
.................................................................................................................................................................................................................................................................................................................................................AAGGCAGAACTTGTGCAGTCGGT...............	23	1	2.00	2	1	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................AAGGCAGAACTTGTGCAGTCGG................	22	1	2.00	2	0	2	0	0	0
.................................................................................................................................................................................................................................................................................................................................................AAGGCAGAACTTGTGCAGTCGGTG..............	24	1	2.00	2	0	2	0	0	0
....................................................................................................................................................................................................AATTC-------CAAA-ATTAC----TGCAAGGG.................................................................................................................................................	22	4	1.50	6	0	6	0	0	0
.................................................................................................................................................................................................................................................................................................................................................AAGGCAGAACTTGTGCAGTCGGTGC.............	25	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................AAAGGCAGAACTTGTGCAGTCG.................	22	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................AAAGGCAGAACTTGTGCAGTCGGT...............	24	1	1.00	1	0	1	0	0	0
.....GAGCAGATTGCCCTCAGCAGAGAAGC........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
..................TCAGCAGAGAAGCATTTATTCGAAT............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................AATTC-------CAAA-ATTAC----TGCAAGGGT................................................................................................................................................	23	4	1.00	4	0	4	0	0	0
........................................................................................................................................................................................................................................................................................................................................................AACTTGTGCAGTCGGTGCAGG..........	21	1	1.00	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................AAAGGCAGAACTTGTGCAGTCGT................	23	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AGGCAGAACTTGTGCAGTCGG................	21	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................A----GT------GAACGT-----AATTC-------CAAA-ATTAC----.........................................................................................................................................................	23	4	0.50	2	0	2	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................AGTCGGTGCAGGTTCCAATGC.	21	3	0.33	1	0	1	0	0	0
............................................................................................................................................................................................CGT-----AATTC-------CAAA-ATTAC----TGCAAGGG.................................................................................................................................................	25	4	0.25	1	0	1	0	0	0
.............................................................................................................................................................................................GT-----AATTC-------CAAA-ATTAC----TGCAAGG..................................................................................................................................................	23	4	0.25	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................GTCGGTGCAGGTTCCAATGC.	20	4	0.25	1	0	0	0	1	0
....................................................................................................................................................................................................AATTC-------CAAA-ATTAC----TGCAAGGGTA...............................................................................................................................................	24	4	0.25	1	0	1	0	0	0
.........................................................................................................................................................................TGCA----GT------GAACGT-----AATTC-------CAAA-ATTAC----T........................................................................................................................................................	27	4	0.25	1	0	0	0	1	0
.....................................................................................................................................................................................................ATTC-------CAAA-ATTAC----TGCAAGGGT................................................................................................................................................	22	4	0.25	1	0	1	0	0	0
.....................................................................................................................................................................................................ATTC-------CAAA-ATTAC----TGCAAGG..................................................................................................................................................	20	4	0.25	1	0	1	0	0	0
..............................................................................................................................................................................................T-----AATTC-------CAAA-ATTAC----TGCAAGGGT................................................................................................................................................	24	4	0.25	1	0	1	0	0	0
...................................................................................................................................................TCCGTCTG-----TCCGTTCGTTGCA----......................................................................................................................................................................................................	21	4	0.25	1	0	0	1	0	0
....................................................................................................................................................CCGTCTG-----TCCGTTCGTTGCA----GT------GAACG.........................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0
............................................................................................................................................................................................CGT-----AATTC-------CAAA-ATTAC----TGCAAGG..................................................................................................................................................	24	4	0.25	1	0	1	0	0	0

droVir3

GT--------------------------------------ATTTGTGCAAAATCCAAATGTATGTAAGAGGCAGAAGGAAGCATCTCCGACCCCATAAAGTAT--ATATTCTTGATCAGCACCAATAGCCCAGTCGATCTAGCCATGTCCGTCTG-----CCTGTCTGTCCGTATGTAT------GAACGAAAGG-ATCT--------CAGAACCTATAAGA-G-----CTAAAGA--C---------------------------------------------------------------------TT-----------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................TCCAAATGTATGTAAGAGGCAGAAGG.........................................................................................................................................................................................................................................................................................................	26	18	1.50	27	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	2	4	0	0	1	0	1	0	6	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TCCAAATGTATGTAAGAGGCAGAAGGA........................................................................................................................................................................................................................................................................................................	27	18	0.56	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	2	2	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................CACCAATAGCCCAGTCGATCT...........................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................ATATTCTTGATCAGCACCAATAG.......................................................................................................................................................................................................................................................	23	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TCCAAATGTATGTAAGAGGCAGAAG..........................................................................................................................................................................................................................................................................................................	25	20	0.40	8	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TTGATCAGCACCAATAGCCCAGTCG...............................................................................................................................................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TCCAAATGTATGTAAGAGGCAGA............................................................................................................................................................................................................................................................................................................	23	20	0.25	5	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................GCCATGTCCGTCTG-----CCTGTCTGTCC............................................................................................................................................................................................................	25	8	0.25	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................TATGTAT------GAACGAAAGG-ATCT--------CAGAAC.................................................................................................................................................................	27	13	0.23	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TCCAAATGTATGTAAGAGGCAG.............................................................................................................................................................................................................................................................................................................	22	20	0.20	4	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................TATGTAT------GAACGAAAGG-ATCT--------CAGAACC................................................................................................................................................................	28	13	0.15	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................T--ATATTCTTGATCAGCACCAATAG.......................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................T--------CAGAACCTATAAGA-G-----CTAAAGA--C---------------------------------------------------------------------T..................................................................	25	20	0.15	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................ATAGCCCAGTCGATCTAGCCA......................................................................................................................................................................................................................................	21	18	0.11	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................ATATTCTTGATCAGCACCAATAGCC.....................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................AT--ATATTCTTGATCAGCACCAATAG.......................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TCCAAATGTATGTAAGAGGCA..............................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TCCAAATGTATGTAAGAGGC...............................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TCCAAATGTATGTAAGAGG................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TCCAAATGTATGTAAGAGGCAGAA...........................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................TAAAGTAT--ATATTCTTGATCAG................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................GCCCAGTCGATCTAGCCATGTCCGTCT.............................................................................................................................................................................................................................	27	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................AGCCCAGTCGATCTAGCCATGTCC.................................................................................................................................................................................................................................	24	16	0.06	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................TGTATGTAAGAGGCAGAAGGAAGC.....................................................................................................................................................................................................................................................................................................	24	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TCCAAATGTATGTAAGAGGCAGAAGGAA.......................................................................................................................................................................................................................................................................................................	28	18	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................GTATGTAT------GAACGAAAGG-ATCT--------.......................................................................................................................................................................	22	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TCT--------CAGAACCTATAAGA-G-----CTAAAGA--C---------------------------------------------------------------------T..................................................................	27	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................TAAAGTAT--ATATTCTTGATCAGC...............................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................TATGTAAGAGGCAGAAGGA........................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................AGAAGGAAGCATCTCCGACCCC.........................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................CAAATGTATGTAAGAGGCAGAAGG.........................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................ATATTCTTGATCAGCACCAA..........................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AAGGAAGCATCTCCGACCCCATAAA....................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................CAAATGTATGTAAGAGGCAGAAG..........................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

----------------------------------------------------------------------------------------GACCCCATAAAGTAT--ATATTCTTGATCAGGACGACGAGCTGAGTCGATATAGCCCTGTCCGTCTG-----TATGA----------------------GCAAAAGG-ATTT--------TAGAAGATATTAGA-G-----CTAGAGAAATTTGGCATGCA--TACT--------------------------------------CGT---------ATTTT-----------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................ACCCCATAAAGTAT--ATATTCTTGATCAGG...............................................................................................................................................................................................................................................................	29	7	0.14	1	1	0	0	0	0	0
.....................................................................................................................................TCGATATAGCCCTGTCCGTCT.............................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	2	0
.........................................................................................ACCCCATAAAGTAT--ATATTCTTGATC..................................................................................................................................................................................................................................................................	26	13	0.08	1	1	0	0	0	0	0
.........................................................................................ACCCCATAAAGTAT--ATATTCTTG.....................................................................................................................................................................................................................................................................	23	14	0.07	1	1	0	0	0	0	0
..............................................................................................................CTTGATCAGGACGACGAGCTGAGTCG...............................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0	0
........................................................................................GACCCCATAAAGTAT--ATAT..........................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0

droGri2

----------------------------------------------------------------------------------ATCTCCGACCCCATAAAGGAT--ATATTCTTGATCAGGGTTAACAGCCGAGTCGATATAGCCATGTCCGTCTG-----TCCGCCCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dp5

-----------------------------------------------------------------------------------TTTCCGACCCCATAAAGTAT--ATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCCTGTCTGTCTG-----TCCGTCCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................................................................................................TTGATCAGCATCAATAGCCGAGTCGAT.............................................................................................................................................................................................................................................	27	20	14.60	292	0	292	0	0	0	0	0	0	0	0
...............................................................................................................TTGATCAGCATCAATAGCCGAGTCG...............................................................................................................................................................................................................................................	25	20	2.30	46	0	0	0	0	46	0	0	0	0	0
...........................................................................................................................AATAGCCGAGTCGATTGAGC........................................................................................................................................................................................................................................	20	20	0.80	16	0	16	0	0	0	0	0	0	0	0
............................................................................................................TTCTTGATCAGCATCAATAGCCGAG..................................................................................................................................................................................................................................................	25	20	0.25	5	0	5	0	0	0	0	0	0	0	0
................................................................................................................................................CTGTCTGTCTG-----TCCGTCCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
............................................................................................................................ATAGCCGAGTCGATTGAGCCCT.....................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................GCCGAGTCGATTGAGCCCTGTCTGT...............................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

-----------------------------------------------------------------------------------TTTCCGACCCCATAAAGTAT--ATATTCTTGATCAGCATCAATAGCCGAGTCGATTGAGCCATGTCCGTCTG-----TCCGTCCCC--------TT------CAGCGCCTAA-TGCT--------CAAAGACTATAAGA-G-------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

----------------------------------------------------------------------------------ATCTCCGACCCTAAAAAGTAT--ATATTTTTGATCAGGATTACCTCCTGAGTCGATATGAGCATTTCCGTCTG-----TCCGTCTGTCGGA----CT------GCGACTC---------------A-----------AC-TGCAAGGGTATATAAATTTCGGCTCCG-----TCCGAAGTTAGCTTTCC-------------------TTTCTTG-----------TT-----------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................TATGAGCATTTCCGTCTG-----TCCGTC.................................................................................................................................................................................................................	24	7	0.43	3	0	3	0	0	0	0
.........................................................................................................................................TATGAGCATTTCCGTCTG-----TCCGTCTGTC.............................................................................................................................................................................................................	28	7	0.14	1	1	0	0	0	0	0
..........................................................................................................................................ATGAGCATTTCCGTCTG-----TCCG...................................................................................................................................................................................................................	21	9	0.11	1	1	0	0	0	0	0
.........................................................................................................................................TATGAGCATTTCCGTCTG-----TCCGT..................................................................................................................................................................................................................	23	9	0.11	1	0	0	1	0	0	0
...........................................................................................................................................TGAGCATTTCCGTCTG-----TCCGT..................................................................................................................................................................................................................	21	9	0.11	1	0	0	0	0	1	0
.....................................................................................................................................TCGATATGAGCATTTCCGTCTG-----TCC....................................................................................................................................................................................................................	25	10	0.10	1	0	1	0	0	0	0
..................................................................................ATCTCCGACCCTAAAAAGT..................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0
.........................................................................................................................TTACCTCCTGAGTCGATATGA.........................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
.......................................................................................................................GATTACCTCCTGAGTCGATATGAGC.......................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................GATTACCTCCTGAGTCGATATGAGCAT.....................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0

droBip1

----------------------------------------------------------------------------------ATCTCCGACCCTATAAAGTAT--ATATTCTTGATCAGGATCACCTCCTGAGTTGATATGAGCATGTCCGTCTG-----TCCGTATGTCTGTCAGTTTCTACGCGAACTC-----AGTT--------TTAAAGCTATT----G-------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCAG------------TGAAGGAG---------------------------------AAGTTTGCAACGCAGTGAAGGAGACGTTTCCGACCCTATAAAGTAT--ATATTCTTGATCAGCATCAACAGCCGAGTCGATCTAGCCATGTCCGTCTG-----TCTGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTAC------------CCATAGAGTAAAAAGATATATTGTATTCGTT-------CAAAAGTATGTAACAGTTAGAAGGAAGCATTTCCGACCCTATAAAGTAT--ATACTCTTGATCA---------GCCGAGTTGATCTAGGCATGTCCGTTTG-----GCTATTCGTCTGT----AT------GAACATTGAG-ATCT--------TCAAAACTATAAAA-G-----CTAAAGC--A---------------------------------------------------------------------TA-----------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

---------------------------------------------------------AAGTGTGTAACA------------CATTTCCGAACCTATAAAGAAT--ATATTCTTGATCAGCATCACCAGGCGAAATTATA-----ACTTCTTTGCTTCTAACA----TATACAC----AT------GTACTCCAAGACATTCCTTACCA-----------GG-TGCAAGGGTATATAAACTTCGGG-TTG-----TC-GAAGTT------------TGAGTTCTTC-----ATTGTTATTTTTTAAATATT-----------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTAC------------TCGTAGAGTAAAAGGGTTTACTAGATTCGTC-------GGAAAGTATGTAACAGGCAAAAGGAAACGTTTCCGACCCCATAATGTAT--ATATTCTTGATCA------CTAGCCGAGTCGATCTAGCCATGTCCGTCTG-----TCTGTCTGTCCGT----AT------GAACTCTAAG-ATTT--------CGAAAACTATAGGA-G-----CTAGGAC-----------AG-----TT-AAACTT------CCC------------------ATGCAG---------ATTCC-----------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTAC------------TCACAGAGTAAAAGGATATATTGTATTCGTG-------CAAAAGTATGTAACAGGGAGAAGGAAGAGTTTCCGACCCTATAAAGTAT--ATATTCTTGATCAGGTTCACTAGCCGAGTCGATCTAGCCATGTCTGCCTG-----TCTGTCCCA--------T----------------------------------ACC---------------TATAAAGATTTCGGAAAAG-----TA-GAAA-----------------------------------------------TT-----------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

-----------------------------------------------------------------------------------TTTCCGACCCTATAAAGTAT--ATATTCTTGATCACAATCAGAAGCGAAGCCGATTTAGCCATGTCCGTCTG-----TTCGTCCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droSec2

-----------------------------------------------------------------------------------TTTCCGACCACATAAAGTGT--ATATTCTTTATCA------ATAGCCGAGTCGATCTAGCCATGTCCGTATG-----TCCGTCTGTCCGT----AT------GAACGTCGAT-ATCC--------CAGGAACTCTA-AA-G-----CTAGAAA-------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............................................................................................................................GCCGAGTCGATCTAGCCATGTCCG................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0

droYak3

T------------------------AAAGGGGTATATTAGATTCGTT-------GAAAAGCATGTAACAGGCAGAAGGAAGCGTTTTCGACCATACAAAATATATATATTCTTGATCAGG------AGCCGAGTCGATCTGGCCATGTCCGTCTG-----TCCGTCCGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................AAAGGGGTATATTAGATTCGTT-------GA...............................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................TGTAACAGGCAGAAGGAAGCGT...................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3
.......................................................................................................................................GATCTGGCCATGTCCGTCTG-----TCCGTC.................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
......................................................................GCAGAAGGAAGCGTTTTCGACCATA........................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0
..............................................T-------GAAAAGCATGTAACAGGCA..............................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................GCAGAAGGAAGCGTTTTCGACCAT.........................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................AACAGGCAGAAGGAAGCGTTTTCGACCAT.........................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................GTAACAGGCAGAAGGAAGCGTTTTC...............................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................ATTCGTT-------GAAAAGCATGTAACAGG................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................ATGTAACAGGCAGAAGGAAGCGTTTTCG..............................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

-----------------------------------------------------------------------------------TTTCCGACCCTATAAAGTATATATATTCTTGACCAGAATCACTAGCCGAGTCGATCTGGCCATGTCTGTCTG----ATTTGTCCAA--------A-------ATAAACCAGGAAATTA-------TGAA-ATTG-----TGTGCGGGTAT--------CGGA-TAGTC---GA-GAAACT------------CGAGTACTCCCTCCTGTTCTGG---------T-TT-----------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dwi_2307

scf2_1100000004851:536178-536366 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads