ID:

dwi_23

 Coordinate:

scf2_1100000004909:4683247-4683318 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

3pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-34.5 -34.4 -34.4

Flybase annnotation

utr3 [utr3_minus_9718]

No Repeatable elements found

Sense Strand Reads

TTAAGTCTACGCGTTAAGTTTTGAACAATTAAAGTAATCCACACTGAAATCGGGTTTCGCTAGCAGCGGACTGTCATGATAAATGTGAAAAACAAACAAGTTCGTTGTCGACGAAACCTGCATCATGTGTCGGACAAACAGCTCTTTTGATTGTGTGAAAATATCAATGAAA

***********************************..((((((((((...(((((((((...(((((((((((((((.....)))..........)).))))))))))...)))))))))..))).)))).)))..************************************ 		Read size # Mismatch Hit Count Total Norm Total M020

head

 V119

head

 V118

embryo

 M045

female body

 V117

male body
....................................................................................................TTCGTTGTCGACGAAACCTGC................................................... 21 0 1 18076.00 18076 4401 13196 261 200 18
....................................................................................................TTCGTTGTCGACGAAACCTGCA.................................................. 22 0 1 9560.00 9560 6753 1484 628 685 10
....................................................................................................TTCGTTGTCGACGAAACCTG.................................................... 20 0 1 5515.00 5515 5265 173 5 72 0
..................................................CGGGTTTCGCTAGCAGCGGACT.................................................................................................... 22 0 1 2100.00 2100 553 941 604 2 0
....................................................................................................TTCGTTGTCGACGAAACCTGCAA................................................. 23 1 1 784.00 784 644 89 19 32 0
....................................................................................................TTCGTTGTCGACGAAACCT..................................................... 19 0 1 432.00 432 402 20 0 10 0
....................................................................................................TTCTTTGTCGACGAAACCTGCA.................................................. 22 1 1 361.00 361 353 6 2 0 0
....................................................................................................TTCGTTGTCGACGAAACC...................................................... 18 0 1 326.00 326 325 1 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCTGCG.................................................. 22 1 1 196.00 196 188 4 2 1 1
..................................................CGGGTTTCGCTAGCAGCGGAC..................................................................................................... 21 0 1 170.00 170 147 15 8 0 0
....................................................................................................TTCTTTGTCGACGAAACCTGCAA................................................. 23 2 1 157.00 157 155 2 0 0 0
....................................................................................................TTCTTTGTCGACGAAACCTGC................................................... 21 1 1 155.00 155 115 40 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCTGCAC................................................. 23 1 1 122.00 122 121 0 0 1 0
....................................................................................................TTCGTTGTCGACTAAACCTGCA.................................................. 22 1 1 121.00 121 117 4 0 0 0
.................................................TCGGGTTTCGCTAGCAGCGGACT.................................................................................................... 23 0 1 109.00 109 33 67 8 0 1
....................................................................................................TTCGTTGTCGACGAAACCTGA................................................... 21 1 1 82.00 82 10 70 0 2 0
....................................................................................................TTCGTTGTCGACGAAACCTGCT.................................................. 22 1 1 78.00 78 74 4 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCTGCAT................................................. 23 0 1 75.00 75 26 40 4 5 0
....................................................................................................TTCGTTGTCGACCAAACCTGCA.................................................. 22 1 1 71.00 71 70 1 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCTAC................................................... 21 1 1 68.00 68 18 49 0 1 0
.....................................................................................................TCGTTGTCGACGAAACCTGCA.................................................. 21 0 1 68.00 68 6 4 0 58 0
....................................................................................................TTCGTTGTCGACTAAACCTGCAA................................................. 23 2 1 66.00 66 65 1 0 0 0
.................................................TCGGGTTTCGCTAGCAGCGGAC..................................................................................................... 22 0 1 66.00 66 45 21 0 0 0
....................................................................................................TTCGTTGTCGACGAAACATGC................................................... 21 1 1 65.00 65 0 65 0 0 0
....................................................................................................TTCCTTGTCGACGAAACCTGCA.................................................. 22 1 1 64.00 64 64 0 0 0 0
....................................................................................................TTCTTTGTCGACGAAACCTG.................................................... 20 1 1 62.00 62 62 0 0 0 0
....................................................................................................TTCGTTGTCGACAAAACCTGC................................................... 21 1 1 61.00 61 21 40 0 0 0
....................................................................................................CTCGTTGTCGACGAAACCTGC................................................... 21 1 1 59.00 59 6 53 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCTGT................................................... 21 1 1 57.00 57 15 41 1 0 0
....................................................................................................TTCGTTGTCGACGAAACCGG.................................................... 20 1 1 54.00 54 54 0 0 0 0
....................................................................................................TTCGTTGTCGACTAAACCTGC................................................... 21 1 1 54.00 54 34 20 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCTGG................................................... 21 1 1 51.00 51 49 2 0 0 0
....................................................................................................TTCCTTGTCGACGAAACCTGC................................................... 21 1 1 48.00 48 34 13 1 0 0
..................................................CGGGTTTCGCTAGCAGCGGACC.................................................................................................... 22 1 1 47.00 47 44 2 1 0 0
....................................................................................................TTCGTTGTCGACAAAACCTGCA.................................................. 22 1 1 45.00 45 39 5 1 0 0
....................................................................................................TTCGTTGTCGACGAAAACTGC................................................... 21 1 1 43.00 43 0 43 0 0 0
....................................................................................................TTCGTTGTCGAAGAAACCTGC................................................... 21 1 1 43.00 43 1 42 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCTGCC.................................................. 22 1 1 42.00 42 33 8 0 1 0
....................................................................................................TTCGTTGTAGACGAAACCTGC................................................... 21 1 1 42.00 42 2 38 2 0 0
....................................................................................................TTCGTTGTCGACTAAACCTG.................................................... 20 1 1 41.00 41 40 1 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCTCC................................................... 21 1 1 36.00 36 1 33 2 0 0
....................................................................................................TTAGTTGTCGACGAAACCTGC................................................... 21 1 1 36.00 36 2 34 0 0 0
.....................................................................................................TCGTTGTCGACGAAACCTGC................................................... 20 0 1 35.00 35 2 16 0 17 0
....................................................................................................TTCCTTGTCGACGAAACCTGCAA................................................. 23 2 1 33.00 33 33 0 0 0 0
....................................................................................................TTCGTTGTCGACCAAACCTGC................................................... 21 1 1 32.00 32 22 10 0 0 0
....................................................................................................TTCGTTGTCGACCAAACCTG.................................................... 20 1 1 32.00 32 32 0 0 0 0
.....................................................................................................TTCTTGTCGACGAAACCTGCA.................................................. 21 2 1 30.00 30 28 2 0 0 0
....................................................................................................TTCGTTGTCGATGAAACCTGC................................................... 21 1 1 29.00 29 12 17 0 0 0
....................................................................................................TTCTTTGTCGACGAAACCT..................................................... 19 1 1 27.00 27 27 0 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCTTC................................................... 21 1 1 26.00 26 2 24 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCCGC................................................... 21 1 1 25.00 25 2 23 0 0 0
.......................................................................................................GTTGTCGACGAAACCTGCA.................................................. 19 0 1 25.00 25 5 20 0 0 0
....................................................................................................ATCGTTGTCGACGAAACCTGC................................................... 21 1 1 25.00 25 2 23 0 0 0
....................................................................................................TTCATTGTCGACGAAACCTGC................................................... 21 1 1 24.00 24 2 22 0 0 0
....................................................................................................TTCGTTGTCGACAAAACCTG.................................................... 20 1 1 24.00 24 21 3 0 0 0
....................................................................................................TTCGTTGTCGACCAAACCTGCAA................................................. 23 2 1 24.00 24 24 0 0 0 0
....................................................................................................TTCGTTGTCGCCGAAACCTGC................................................... 21 1 1 24.00 24 1 23 0 0 0
.......................................................................................................TTTGTCGACGAAACCTGCAA................................................. 20 2 1 24.00 24 24 0 0 0 0
.......................................................................................................GTTGTCGACGAAACCTGC................................................... 18 0 1 23.00 23 3 19 1 0 0
....................................................................................................TTCCTTGTCGACGAAACCTG.................................................... 20 1 1 22.00 22 22 0 0 0 0
....................................................................................................TTCGTTGCCGACGAAACCTGC................................................... 21 1 1 22.00 22 4 17 0 1 0
....................................................................................................TTCGTTGTCGACGAAACCTGCAG................................................. 23 1 1 21.00 21 18 3 0 0 0
...................................................GGGTTTCGCTAGCAGCGGACT.................................................................................................... 21 0 1 20.00 20 0 15 5 0 0
....................................................................................................TTCGCTGTCGACGAAACCTGC................................................... 21 1 1 20.00 20 3 16 0 1 0
....................................................................................................TTCGTTGTCAACGAAACCTGC................................................... 21 1 1 20.00 20 2 18 0 0 0
....................................................................................................TTCGTTGTCGACGAGACCTGC................................................... 21 1 1 18.00 18 2 15 0 1 0
..................................................CGGGTTTCGCTAGCATCGGACT.................................................................................................... 22 1 1 18.00 18 14 2 2 0 0
......................................................................................................CGTTGTCGACGAAACCTGC................................................... 19 0 1 18.00 18 4 14 0 0 0
....................................................................................................TTCGTTGTCGACGAAACTTGC................................................... 21 1 1 18.00 18 0 18 0 0 0
.....................................................................................................TTCTTGTCGACGAAACCTGC................................................... 20 2 1 18.00 18 10 8 0 0 0
....................................................................................................TTTGTTGTCGACGAAACCTGC................................................... 21 1 1 18.00 18 6 11 1 0 0
....................................................................................................TCCGTTGTCGACGAAACCTGC................................................... 21 1 1 18.00 18 1 17 0 0 0
....................................................................................................TTCGTTGTCGAAGAAACCTGCA.................................................. 22 1 1 17.00 17 4 11 0 2 0
....................................................................................................TTCGTTGTTGACGAAACCTGC................................................... 21 1 1 17.00 17 2 14 1 0 0
....................................................................................................TTCGTTGTCGACGAAGCCTGC................................................... 21 1 1 17.00 17 3 14 0 0 0
....................................................................................................TTCGTTGTCGACGAACCCTGC................................................... 21 1 1 17.00 17 0 17 0 0 0
.....................................................................................................TTGTTGTCGACGAAACCTGCA.................................................. 21 1 1 17.00 17 12 4 0 0 1
.....................................................................................................TTCTTGTCGACGAAACCTGCAA................................................. 22 3 2 16.50 33 33 0 0 0 0
....................................................................................................TTCGTCGTCGACGAAACCTGC................................................... 21 1 1 16.00 16 2 14 0 0 0
....................................................................................................TTCTTTGTCGACGAAACCTGCG.................................................. 22 2 1 16.00 16 16 0 0 0 0
....................................................................................................TTCGTTGTCGGCGAAACCTGC................................................... 21 1 1 16.00 16 6 10 0 0 0
........................................................................................................TTGTCGACGAAACCTGCA.................................................. 18 0 1 14.00 14 13 1 0 0 0
....................................................................................................CTCGTTGTCGACGAAACCTGCA.................................................. 22 1 1 14.00 14 7 6 1 0 0
...................................................................................................CTTCGTTGTCGACGAAACCTGC................................................... 22 1 1 14.00 14 5 7 1 1 0
....................................................................................................TTCGTTGTCGACGAAACCTGCAAA................................................ 24 2 1 14.00 14 13 1 0 0 0
.....................................................................................................TTGTTGTCGACGAAACCTGC................................................... 20 1 1 13.00 13 4 9 0 0 0
.................................................TCGGGTTTCGCTAGCAGCGGA...................................................................................................... 21 0 1 13.00 13 0 13 0 0 0
....................................................................................................TTCGTTGTCGACGGAACCTGC................................................... 21 1 1 13.00 13 1 12 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCCGCA.................................................. 22 1 1 13.00 13 4 6 2 1 0
....................................................................................................TTCTTTGTCGACGAAACCTGCAT................................................. 23 1 1 12.00 12 11 1 0 0 0
.......................................................................................................TTTGTCGACGAAACCTGCA.................................................. 19 1 1 12.00 12 11 0 0 1 0
....................................................................................................TTCGTTGTCGACGAAATCTGC................................................... 21 1 1 12.00 12 0 12 0 0 0
....................................................................................................TTCGTTGTCGACAAAACCTGCAA................................................. 23 2 1 12.00 12 12 0 0 0 0
..................................................CGGGTTTCGCTAGCAGCGGACG.................................................................................................... 22 1 1 12.00 12 12 0 0 0 0
....................................................................................................TTTGTTGTCGACGAAACCTGCA.................................................. 22 1 1 11.00 11 6 4 1 0 0
....................................................................................................TTCGTAGTCGACGAAACCTGC................................................... 21 1 1 11.00 11 0 11 0 0 0
....................................................................................................TTCGTTGACGACGAAACCTGC................................................... 21 1 1 11.00 11 1 10 0 0 0
..................................................CGGTTTTCGCTAGCAGCGGACT.................................................................................................... 22 1 1 10.00 10 7 3 0 0 0
....................................................................................................TTCGTTGTCGAGGAAACCTGCA.................................................. 22 1 1 10.00 10 4 0 0 6 0
....................................................................................................TTCGTTGTAGACGAAACCTGCA.................................................. 22 1 1 10.00 10 2 7 1 0 0
....................................................................................................TTCGTTGTCGATGAAACCTGCA.................................................. 22 1 1 10.00 10 10 0 0 0 0
....................................................................................................TTCTTTGTCGACGAAACCTGCAC................................................. 23 2 1 10.00 10 10 0 0 0 0
....................................................................................................TTCGTTGTCGACGACACCTGC................................................... 21 1 1 10.00 10 0 10 0 0 0
.......................................................................................................TTTGTCGACGAAACCTGC................................................... 18 1 1 10.00 10 9 1 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCTGAA.................................................. 22 1 1 10.00 10 4 5 0 1 0
....................................................................................................TTCGATGTCGACGAAACCTGC................................................... 21 1 1 10.00 10 2 8 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCTGTA.................................................. 22 1 1 9.00 9 7 1 1 0 0
....................................................................................................TTCGTTGTCGACGGAACCTGCA.................................................. 22 1 1 9.00 9 6 2 1 0 0
....................................................................................................TTCTTTGTCGACGAAACC...................................................... 18 1 1 9.00 9 9 0 0 0 0
....................................................................................................TTCGTTGTCGGCGAAACCTGCA.................................................. 22 1 1 9.00 9 7 1 1 0 0
....................................................................................................TTCTTTGTCGACGAAACCTGCAAA................................................ 24 3 1 8.00 8 8 0 0 0 0
....................................................................................................TTCATTGTCGACGAAACCTGCA.................................................. 22 1 1 8.00 8 4 4 0 0 0
....................................................................................................TTCGTTGACGACGAAACCTGCA.................................................. 22 1 1 8.00 8 7 1 0 0 0
..................................................CGGGTTTAGCTAGCAGCGGACT.................................................................................................... 22 1 1 8.00 8 0 6 2 0 0
....................................................................................................TCCGTTGTCGACGAAACCTGCA.................................................. 22 1 1 8.00 8 1 6 1 0 0
....................................................................................................TTCGTTGTCGACGAAACCAGC................................................... 21 1 1 8.00 8 0 8 0 0 0
........................................................................................................TTGTCGACGAAACCTGCAA................................................. 19 1 1 8.00 8 8 0 0 0 0
....................................................................................................TTCGTTGTCGATGAAACCTGCAA................................................. 23 2 1 8.00 8 7 1 0 0 0
......................................................................................................CGTTGTCGACGAAACCTGCA.................................................. 20 0 1 8.00 8 3 4 0 1 0
....................................................................................................TTCGTTGTCGACGAAAACTGCA.................................................. 22 1 1 7.00 7 1 6 0 0 0
..................................................CGGGTTTCGCTAACAGCGGACT.................................................................................................... 22 1 1 7.00 7 2 4 1 0 0
....................................................................................................CTCGTTGTCGACGAAACCTG.................................................... 20 1 1 7.00 7 6 1 0 0 0
...................................................................................................CTTCGTTGTCGACGAAACCTGCA.................................................. 23 1 1 7.00 7 7 0 0 0 0
....................................................................................................TTCGTTGTCCACGAAACCTGC................................................... 21 1 1 7.00 7 0 7 0 0 0
....................................................................................................TTCGTTGTCGACGAAACATGCA.................................................. 22 1 1 7.00 7 0 6 1 0 0
....................................................................................................TTCGTTGTCGACGAAACCTC.................................................... 20 1 1 7.00 7 0 5 1 1 0
....................................................................................................TTCGTTGTTGACGAAACCTGCA.................................................. 22 1 1 7.00 7 4 3 0 0 0
....................................................................................................TTCGTTGTCAACGAAACCTGCA.................................................. 22 1 1 7.00 7 5 1 0 1 0
..................................................CGGGTTTCGCTAGCAGAGGACT.................................................................................................... 22 1 1 6.00 6 0 6 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCTACA.................................................. 22 1 1 6.00 6 2 3 1 0 0
.......................................................................................................GTTGTCGACGAAACCTGCAA................................................. 20 1 1 6.00 6 4 2 0 0 0
....................................................................................................TTCGTTTTCGACGAAACCTGC................................................... 21 1 1 6.00 6 1 5 0 0 0
....................................................................................................TTCGGTGTCGACGAAACCTGCA.................................................. 22 1 1 6.00 6 5 0 0 1 0
.....................................................................................................TTCTTGTCGACGAAACCTG.................................................... 19 2 2 6.00 12 12 0 0 0 0
....................................................................................................TACGTTGTCGACGAAACCTGC................................................... 21 1 1 6.00 6 0 6 0 0 0
........................................................................GTCATGATAAATGTGAAAAACA.............................................................................. 22 0 1 6.00 6 2 4 0 0 0
....................................................................................................TTCGGTGTCGACGAAACCTG.................................................... 20 1 1 6.00 6 6 0 0 0 0
..................................................CGGGTTTCGCTAGAAGCGGACT.................................................................................................... 22 1 1 6.00 6 0 3 3 0 0
....................................................................................................TTCGGTGTCGACGAAACCTGC................................................... 21 1 1 6.00 6 6 0 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCC..................................................... 19 1 2 5.50 11 11 0 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCGGC................................................... 21 1 1 5.00 5 1 4 0 0 0
....................................................................................................TTCGTTGTCGACGTAACCTGC................................................... 21 1 1 5.00 5 1 4 0 0 0
....................................................................................................TTCGTTGCCGACGAAACCTG.................................................... 20 1 1 5.00 5 4 0 0 1 0
....................................................................................................TTCGTTGTTGACGAAACCTG.................................................... 20 1 1 5.00 5 4 1 0 0 0
..................................................CGGGTTTCGCTAGCAGCGGCCT.................................................................................................... 22 1 1 5.00 5 1 3 1 0 0
....................................................................................................TTCGTTGTCGAGGAAACCTGC................................................... 21 1 1 5.00 5 1 4 0 0 0
....................................................................................................TTGGTTGTCGACGAAACCTGC................................................... 21 1 1 5.00 5 2 2 1 0 0
..................................................CAGGTTTCGCTAGCAGCGGACT.................................................................................................... 22 1 1 5.00 5 0 3 2 0 0
....................................................................................................TTCGTTGTCGACGAGACCTGCA.................................................. 22 1 1 5.00 5 4 1 0 0 0
....................................................................................................TTCGTTGTCGCCGAAACCTGCA.................................................. 22 1 1 5.00 5 2 3 0 0 0
....................................................................................................TTCGTTATCGACGAAACCTGC................................................... 21 1 1 5.00 5 1 4 0 0 0
.....................................................................................................TCGTTGTCGACGAAACCTG.................................................... 19 0 1 5.00 5 0 2 0 3 0
..................................................CGGGTTTCCCTAGCAGCGGACT.................................................................................................... 22 1 1 5.00 5 5 0 0 0 0
....................................................................................................TTAGTTGTCGACGAAACCTGCA.................................................. 22 1 1 5.00 5 1 3 0 1 0
..................................................CGGGTTTCGCTAGCACCGGACT.................................................................................................... 22 1 1 5.00 5 3 2 0 0 0
..................................................CGGGATTCGCTAGCAGCGGACT.................................................................................................... 22 1 1 4.00 4 1 3 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCG..................................................... 19 1 1 4.00 4 4 0 0 0 0
....................................................................................................TTTGTTGTCGACGAAACCTG.................................................... 20 1 1 4.00 4 3 1 0 0 0
....................................................................................................TTCGTTGTCGACGAAATCTGCA.................................................. 22 1 1 4.00 4 3 0 1 0 0
....................................................................................................TTCATTGTCGACGAAACCTGCAA................................................. 23 2 1 4.00 4 4 0 0 0 0
.....................................................................................................TCCTTGTCGACGAAACCTGCAA................................................. 22 2 1 4.00 4 4 0 0 0 0
....................................................................................................TTCGTTGTCGACGAAACTTGCA.................................................. 22 1 1 4.00 4 2 2 0 0 0
....................................................................................................TTCGTTGTCGTCGAAACCTGC................................................... 21 1 1 4.00 4 0 3 1 0 0
....................................................................................................TTCGTTGCCGACGAAACCTGCA.................................................. 22 1 1 4.00 4 2 0 2 0 0
....................................................................................................TTCCTTGTCGACGAAACCTGCG.................................................. 22 2 1 4.00 4 4 0 0 0 0
....................................................................................................TTCGTTGTCGACGTAACCTGCA.................................................. 22 1 1 4.00 4 4 0 0 0 0
....................................................................................................TTCGTTGTCGACGCAACCTGC................................................... 21 1 1 4.00 4 0 4 0 0 0
..................................................CGGGTTTCGCTACCAGCGGACT.................................................................................................... 22 1 1 4.00 4 1 2 1 0 0
....................................................................................................TTCGTTGTCTACGAAACCTGC................................................... 21 1 1 4.00 4 0 4 0 0 0
....................................................................................................GTCGTTGTCGACGAAACCTGC................................................... 21 1 1 4.00 4 0 4 0 0 0
....................................................................................................TTCGTTGTCCACGAAACCTGCA.................................................. 22 1 1 4.00 4 0 3 1 0 0
....................................................................................................TTCGCTGTCGACGAAACCTG.................................................... 20 1 1 4.00 4 4 0 0 0 0
.....................................................................................................TCCTTGTCGACGAAACCTGCA.................................................. 21 1 1 4.00 4 4 0 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCTCCA.................................................. 22 1 1 4.00 4 1 2 0 1 0
...................................................................................................GTTCGTTGTCGACGAAACCTGCC.................................................. 23 1 1 4.00 4 4 0 0 0 0
....................................................................................................TTCGTTGTCGATGAAACCTG.................................................... 20 1 1 4.00 4 2 1 0 1 0
..................................................CGGGTTTCGCTAGCAGCGGA...................................................................................................... 20 0 1 4.00 4 0 4 0 0 0
....................................................................................................TTCGTTGTCGACTAAACCTGCC.................................................. 22 2 1 4.00 4 4 0 0 0 0
..................................................CGGGTTTCGCTATCAGCGGACT.................................................................................................... 22 1 1 4.00 4 0 0 4 0 0
.....................................................................................................TTGTTGTCGACGAAACCTGCAA................................................. 22 2 1 4.00 4 3 1 0 0 0
....................................................................................................TTTGTTGTCGACGAAACCT..................................................... 19 1 1 4.00 4 4 0 0 0 0
....................................................................................................TTCGTTGTCGACGAAGCCTGCA.................................................. 22 1 1 4.00 4 2 2 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCTTCA.................................................. 22 1 1 4.00 4 0 2 2 0 0
....................................................................................................TTCGTTGTCGACTAAACC...................................................... 18 1 1 4.00 4 4 0 0 0 0
..................................................CGGGTTTCGTTAGCAGCGGGCT.................................................................................................... 22 2 1 4.00 4 0 3 1 0 0
....................................................................................................TTCGTTGTCGACCAAACCTGCG.................................................. 22 2 1 3.00 3 3 0 0 0 0
.......................................................................................................TTTGTCGACGAAACCTGCAT................................................. 20 1 1 3.00 3 3 0 0 0 0
....................................................................................................TTCTTTGTCGACGAAACCTGCAG................................................. 23 2 1 3.00 3 3 0 0 0 0
...................................................................................................GTTCGTTGTCGACGAAACCTGC................................................... 22 0 1 3.00 3 0 0 3 0 0
....................................................................................................TTCGTTGACGACGAAACCTG.................................................... 20 1 1 3.00 3 3 0 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCTGCACT................................................ 24 2 1 3.00 3 3 0 0 0 0
..................................................AGGGTTTCGCTAGCAGCGGACT.................................................................................................... 22 1 1 3.00 3 0 2 1 0 0
....................................................................................................TTCGTCGTCGACGAAACCTGCA.................................................. 22 1 1 3.00 3 2 0 1 0 0
.......................................................................................................TTCGTCGACGAAACCTGC................................................... 18 2 1 3.00 3 0 3 0 0 0
....................................................................................................TTCGTTGTCGACGAGACCTG.................................................... 20 1 1 3.00 3 3 0 0 0 0
....................................................................................................TACGTTGTCGACGAAACCTGCA.................................................. 22 1 1 3.00 3 1 2 0 0 0
....................................................................................................TTCGTTGTCGACTAAACCTGCAC................................................. 23 2 1 3.00 3 3 0 0 0 0
....................................................................................................TTCGTTGTCGGCGAAACCTG.................................................... 20 1 1 3.00 3 2 1 0 0 0
..................................................CGGGTTTCGCTAGCAACGGACT.................................................................................................... 22 1 1 3.00 3 0 3 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCTGCAACC............................................... 25 2 1 3.00 3 0 0 3 0 0
..................................................CGGGTTTCTCTAGCAGCGGACC.................................................................................................... 22 2 1 3.00 3 3 0 0 0 0
....................................................................................................ATCGTTGTCGACGAAACCTGCA.................................................. 22 1 1 3.00 3 1 2 0 0 0
.....................................................................................................TCGTTGTCGACGAAACCTGCAA................................................. 22 1 1 3.00 3 2 1 0 0 0
..................................................CGGGTTTCGCTAGCAGCGGAAT.................................................................................................... 22 1 1 3.00 3 0 3 0 0 0
....................................................................................................TTCGTTGTCGACAAAACC...................................................... 18 1 1 3.00 3 3 0 0 0 0
..................................................CGGGTTTCGCTAGCAGCGAACT.................................................................................................... 22 1 1 3.00 3 0 3 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCCG.................................................... 20 1 1 3.00 3 3 0 0 0 0
....................................................................................................TTCCTTGTCGACGAAACC...................................................... 18 1 1 3.00 3 3 0 0 0 0
..................................................CGGGCTTCGCTAGCAGCGGACT.................................................................................................... 22 1 1 3.00 3 2 1 0 0 0
....................................................................................................TTCGTTGTCTACGAAACCTGCA.................................................. 22 1 1 3.00 3 2 0 1 0 0
....................................................................................................TTGGTTGTCGACGAAACCTGCA.................................................. 22 1 1 3.00 3 1 1 1 0 0
....................................................................................................TTCGTTGTCGACGAAGCCTG.................................................... 20 1 1 3.00 3 3 0 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCTGAAA................................................. 23 2 1 3.00 3 2 1 0 0 0
....................................................................................................TTCGTTGTCGACGATACCTGC................................................... 21 1 1 3.00 3 0 3 0 0 0
...................................................................................................GTTCGTTGTCGACGAAACCTGCT.................................................. 23 1 1 3.00 3 3 0 0 0 0
....................................................................................................TTCCTTGTCGACGAAACCT..................................................... 19 1 1 3.00 3 3 0 0 0 0
....................................................................................................TTCGTTGTCGAGGAAACCTG.................................................... 20 1 1 3.00 3 3 0 0 0 0
....................................................................................................TTCGTTGTGGACGAAACCTG.................................................... 20 1 1 3.00 3 3 0 0 0 0
.................................................TCGGGTTTCGCTAGCAGCGG....................................................................................................... 20 0 1 3.00 3 1 2 0 0 0
....................................................................................................TTCGTTGTCGACGTAACCTG.................................................... 20 1 1 3.00 3 3 0 0 0 0
....................................................................................................TTAGTTGTCGACGAAACCTG.................................................... 20 1 1 3.00 3 1 2 0 0 0
....................................................................................................TTCGTTGTAGACGAAACCTG.................................................... 20 1 1 3.00 3 3 0 0 0 0
..................................................CGGGTTTCTCTAGCAGCGGACT.................................................................................................... 22 1 1 3.00 3 3 0 0 0 0
.....................................................................................................TTCGTGTCGACGAAACCTGC................................................... 20 3 7 2.14 15 1 14 0 0 0
....................................................................................................TTCGTTGTCGACCAAACCTGCT.................................................. 22 2 1 2.00 2 2 0 0 0 0
..................................................TGGGTTTCGCTAGCAGCGGACT.................................................................................................... 22 1 1 2.00 2 1 1 0 0 0
....................................................................................................TTCGTTCTCGACGAAACCTGC................................................... 21 1 1 2.00 2 0 2 0 0 0
....................................................................................................GTCGTTGTCGACGAAACCTGCA.................................................. 22 1 1 2.00 2 0 2 0 0 0
..................................................CGGGTTTCGCTAGCAGCGTACT.................................................................................................... 22 1 1 2.00 2 0 0 2 0 0
....................................................................................................TTCGTTGTCAACGAAACCTG.................................................... 20 1 1 2.00 2 2 0 0 0 0
.................................................TCGGGTTTCGCTAGCAGCGGACC.................................................................................................... 23 1 1 2.00 2 2 0 0 0 0
....................................................................................................TTCGTTGTCGACGAATCCTGCA.................................................. 22 1 1 2.00 2 1 0 1 0 0
....................................................................................................TTCGTGGTCGACGAAACCTG.................................................... 20 1 1 2.00 2 2 0 0 0 0
..................................................CGGGTTTCGCTAGCAGCGGAA..................................................................................................... 21 1 1 2.00 2 0 2 0 0 0
......................................................TTTCGCTAGCAGCGGACT.................................................................................................... 18 0 1 2.00 2 2 0 0 0 0
......................................................................................................CTTTGTCGACGAAACCTG.................................................... 18 1 1 2.00 2 2 0 0 0 0
....................................................................................................TTCTTTGTCGACGAAACCTGCATT................................................ 24 2 1 2.00 2 2 0 0 0 0
....................................................................................................TTCGTTGGCGACGAAACCTGC................................................... 21 1 1 2.00 2 1 1 0 0 0
..................................................CGGGGTTCGCTAGCAGCGGACC.................................................................................................... 22 2 1 2.00 2 2 0 0 0 0
.....................................................................................................TCGCTGTCGACGAAACCTGC................................................... 20 1 1 2.00 2 0 2 0 0 0
....................................................................................................TTCATTGTCGACGAAACCTG.................................................... 20 1 1 2.00 2 2 0 0 0 0
..................................................CGGGTTTCGCTAGTAGCGGACT.................................................................................................... 22 1 1 2.00 2 0 1 1 0 0
....................................................................................................TTCTTTGTCGACGAAACCTGCT.................................................. 22 2 1 2.00 2 2 0 0 0 0
..................................................CGGGTTTCGCTAGCAGCGGTCT.................................................................................................... 22 1 1 2.00 2 1 1 0 0 0
..................................................CGGATTTCGCTAGCAGCGGACT.................................................................................................... 22 1 1 2.00 2 0 2 0 0 0
....................................................................................................TTCGTTGGCGACGAAACCTGCA.................................................. 22 1 1 2.00 2 2 0 0 0 0
...................................................CGGTTTCCCTAGCAGCGGACT.................................................................................................... 21 2 1 2.00 2 2 0 0 0 0
....................................................................................................TTCTTTGTTGACGAAACCTGC................................................... 21 2 1 2.00 2 2 0 0 0 0
....................................................................................................TTCTTTTTCGACGAAACCTGCA.................................................. 22 2 1 2.00 2 2 0 0 0 0
....................................................................................................TTCGCTGTCGACGAAACCTGCA.................................................. 22 1 1 2.00 2 1 0 1 0 0
..................................................GGGGTTTCGCTAGCAGCGGACT.................................................................................................... 22 1 1 2.00 2 0 0 2 0 0
.....................................................................................................TTGTTGTCGACGAAACCTG.................................................... 19 1 1 2.00 2 2 0 0 0 0
..................................................CGGGTTTCGCTACCAGCGGAC..................................................................................................... 21 1 1 2.00 2 2 0 0 0 0
....................................................................................................TTCGTTGTCGACGAAACATTC................................................... 21 2 1 2.00 2 0 2 0 0 0
..................................................CGGGTTTCGCTCGCAGCGGACT.................................................................................................... 22 1 1 2.00 2 0 2 0 0 0
....................................................................................................TTCCTTTTCGACGAAACCTGCAA................................................. 23 3 1 2.00 2 2 0 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCTGAAT................................................. 23 1 1 2.00 2 1 1 0 0 0
....................................................................................................TTCGTTGTCGACCAAACCTGT................................................... 21 2 1 2.00 2 2 0 0 0 0
..................................................CGGGTTTCGCTAGCAGCAGACT.................................................................................................... 22 1 1 2.00 2 0 2 0 0 0
....................................................................................................TTCGGTGTCGACGAAACCTGCAA................................................. 23 2 1 2.00 2 2 0 0 0 0
....................................................................................................TTCTTTGTCGACGAAACCTGCC.................................................. 22 2 1 2.00 2 2 0 0 0 0
....................................................................................................TTCGTTGTCGACGAACCCTGCA.................................................. 22 1 1 2.00 2 0 2 0 0 0
..................................................CGGCTTTCGCTAGCAGCGGACT.................................................................................................... 22 1 1 2.00 2 1 1 0 0 0
..................................................CGGGTTTCGCTGGCAGCGGACT.................................................................................................... 22 1 1 2.00 2 1 0 1 0 0
.....................................................................................................TCCTTGTCGACGAAACCTGCAC................................................. 22 2 1 2.00 2 2 0 0 0 0
..................................................CTGGTTTCGCTAGCAGCGGACT.................................................................................................... 22 1 1 2.00 2 1 0 1 0 0
....................................................................................................TTCGTGGTCGACGAAACCTGC................................................... 21 1 1 2.00 2 1 1 0 0 0
....................................................................................................TTCGCTGTCGACAAAACCTGC................................................... 21 2 1 2.00 2 0 2 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCTGGA.................................................. 22 1 1 2.00 2 1 0 1 0 0
....................................................................................................TTCATTGTCGACGAAACCT..................................................... 19 1 1 2.00 2 2 0 0 0 0
....................................................................................................TTCGTTGTCCACGAAACCTG.................................................... 20 1 1 2.00 2 2 0 0 0 0
........................................................................................................TTGTCGACGAAACCTGCAT................................................. 19 0 1 2.00 2 2 0 0 0 0
..................................................CGGGTTTCGCTAGCAGCTGACT.................................................................................................... 22 1 1 2.00 2 1 1 0 0 0
...................................................................................................TTTCGTTGTCGACGAAACCTGCA.................................................. 23 1 1 2.00 2 0 0 0 2 0
..................................................CGGGTTTCACTAGCAGCGGACT.................................................................................................... 22 1 1 2.00 2 0 1 1 0 0
......................................................................................................TTTTGTCGACGAAACCTGC................................................... 19 2 1 2.00 2 1 1 0 0 0
....................................................................................................TTCGTTGTCGACGAAACGTGC................................................... 21 1 1 2.00 2 0 2 0 0 0
.................................................TCGGGTTTCGCTAGCAGCGGAT..................................................................................................... 22 1 1 2.00 2 0 2 0 0 0
...................................................................................................TTTCGTTGTCGACGAAACCTGC................................................... 22 1 1 2.00 2 1 1 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCTCA................................................... 21 2 1 2.00 2 0 0 1 1 0
....................................................................................................TCCGTTGTCGACGAAACCTG.................................................... 20 1 1 2.00 2 1 0 0 1 0
.....................................................................................................TCTTTGTCGACGAAACCTGCA.................................................. 21 1 1 1.00 1 1 0 0 0 0
................................................................................................AGATTTCGTTGTCGACGAAACCTGCA.................................................. 26 3 1 1.00 1 0 0 0 1 0
....................................................................................................TTCGTTGTTGACGAAACCTCC................................................... 21 2 1 1.00 1 0 1 0 0 0
....................................................................................................TTCGTTGTCAACGAACCCTGC................................................... 21 2 1 1.00 1 0 1 0 0 0
..................................................CGGGTTTCGCTGGCAGCGGAC..................................................................................................... 21 1 1 1.00 1 0 1 0 0 0
....................................................................................................TTCGTTGTCGACGAAACATGCACT................................................ 24 3 1 1.00 1 1 0 0 0 0
.................................................TCGGGTTTCGTTAGCAGCGGACT.................................................................................................... 23 1 1 1.00 1 0 1 0 0 0
....................................................................................................CTCGTTGTCGACGAAACTTGC................................................... 21 2 1 1.00 1 0 1 0 0 0
....................................................................................................TTCGTTGTCGGCGAAACCGGC................................................... 21 2 1 1.00 1 0 1 0 0 0
......................................................TTTCGCTAGCAGCGGACC.................................................................................................... 18 1 1 1.00 1 1 0 0 0 0
........................................................................................................TTGTCGACGAAACCTGCGA................................................. 19 2 1 1.00 1 1 0 0 0 0
....................................................................................................TTCGTTCTCGACGAAACCTG.................................................... 20 1 1 1.00 1 1 0 0 0 0
....................................................................................................TTCGTTGTCGAAGAAACCTGA................................................... 21 2 1 1.00 1 0 1 0 0 0
....................................................................................................TTCGTTGTCGACTAAACGTGCA.................................................. 22 2 1 1.00 1 1 0 0 0 0
....................................................................................................TTCGTTGTCGACGAAACCTGCAAAA............................................... 25 2 1 1.00 1 1 0 0 0 0
..................................................CGGGTTTCGCCAGCAGCGGACT.................................................................................................... 22 1 1 1.00 1 0 1 0 0 0
..................................................CGGGTTTCGCTATCAGCGGAC..................................................................................................... 21 1 1 1.00 1 0 1 0 0 0
....................................................................................................TTCGTTGGCGACGAAACCTG.................................................... 20 1 1 1.00 1 1 0 0 0 0
........................................................................GTCATGATAAATGTGAAA.................................................................................. 18 0 1 1.00 1 1 0 0 0 0
....................................................................................................TTCGTTGTCGACAAAACCTGCAT................................................. 23 1 1 1.00 1 1 0 0 0 0

Anti-sense strand reads

AATTCAGATGCGCAATTCAAAACTTGTTAATTTCATTAGGTGTGACTTTAGCCCAAAGCGATCGTCGCCTGACAGTACTATTTACACTTTTTGTTTGTTCAAGCAACAGCTGCTTTGGACGTAGTACACAGCCTGTTTGTCGAGAAAACTAACACACTTTTATAGTTACTTT

************************************..((((((((((...(((((((((...(((((((((((((((.....)))..........)).))))))))))...)))))))))..))).)))).)))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004909:4683197-4683368 + dwi_23 confident TTAAGTCTACGCGTTAAGTTTTGAACAATTAAAGTAATCCACACTGAAATCGGGTTTCGCTAGCAGCGGACTGTCATGATAAATGTGAAAAACAAACAAGTTCGTTGTCGACGAAACCTGCATCATGTGTCGGACAAACAGCTCTT----------------TTGATTGTGTGAAAATATCAATGAA-----A
droVir3 scaffold_12942:51501-51588 + dvi-mir-981 Known_mirbase A--------------------------------ACAATCTACATTGAACTCAGATTTCGTCAGCAGCGGGCTGTGATGATT----------ATGAACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT---------------------------------------------------------------
droMoj3 scaffold_6328:4397477-4397594 + dmo_26 confident T---------------------GGATAAAAATAGTAATCTACATTGAACTCAGGTTTCGTTAGCAACGGGCTGTGATGATTA--------AAAGAACAAGTTCGTTGTCGACGAAACCTGCATGCTATGT-GGAGAGGCAACCATTCT---------------------------------------------
droGri2 scaffold_14853:795288-795379 + dgr_59 candidate-rescued T--------------------------A---GTGTGTTCCACATTGAGCTCGGGTTTCGTCAGCAGCGGGCTGTGATGACT---------AAAAAACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT---------------------------------------------------------------
dp5 XL_group1a:4258895-4259018 - dps-mir-981 Known_mirbase A-----------------------------------ATCCACATTGAAATCGGGTTTCGTTAACAGCGGGCTGTTATGAATA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAGAAACAACAAATGCAACAAAAAACTGTGACA--------------------AA-----A
droPer2 scaffold_11:835029-835152 - dpe_26 confident A-----------------------------------ATCCACATTGAAATCGGGTTTCGTTAACAGCGGGCTGTTATGAATA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAGAAACAACAAATGCAAAAAAAAACTGTGACA--------------------AA-----A
droAna3 scaffold_12929:1586946-1587039 + dan_9 confident A-----------------------------------GTCCTCACTGAAGCCGGGTTTCGTTAACAGCGGGCTGTCATTTCGA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAATAA-------------------------------------------------------
droBip1 scf7180000396543:52357-52468 + G------------TTAA-----GTGTTATGTGAATTATCCTCACTGAAGCCGGGTTTCGTTAACAGCGGACTGTCATTTCGA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAATGA-------------------------------------------------------
droKik1 scf7180000302398:393016-393132 + A-----------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGTCTATAAT--------------TTTAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAAACAACGTTC-A-----AAATTTGTGAAA--------------------AATTAGAG
droFic1 scf7180000453253:126078-126217 - A--------------------------GTTACAAAAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTTTATTGT--------TATTAGCAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAACTCAACATT----ACAAGCAGCCGTTACGATCTAATTAAAA---------T-----A
droEle1 scf7180000491043:308397-308495 + A--------------------------ATCAAAGAAGTCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTATAACC---------GTTTGACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAA----------------------------------------------------------
droRho1 scf7180000779976:18412-18508 - A-----------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACAAC-A--------ATTGGACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAAAATCAAC---------------------------------------------------
droBia1 scf7180000301760:4274663-4274763 - A-----------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACACTCT--------TTTCAACGAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCT------------------------------------------------
droTak1 scf7180000415704:1276936-1277036 - A-----------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACGTACT--------TTTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCT------------------------------------------------
droEug1 scf7180000408994:414281-414395 - A------------------------------------TCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTCTTTACT--------TTTCAACTAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTT-A---------------------------ACTATCAACGCT-----A
dm3 chrX:1682887-1682986 - dme-mir-981 Known_mirbase A------------------------------------TCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCT------------------------------------------------
droSim2 x:1541022-1541121 - dsi-mir-981 Known_mirbase A------------------------------------TCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCT------------------------------------------------
droSec2 scaffold_10:1477762-1477861 - dse_18 confident A------------------------------------TCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCT------------------------------------------------
droYak3 X:1528071-1528170 - dya_89 confident A------------------------------------TCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAAAAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCT------------------------------------------------
droEre2 scaffold_4644:1660960-1661061 - der_13 confident A------------------------------------TCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTC-T---------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TTAAGTCTACGCGTTAAGTTTTGAACAATTAAAGTAATCCACACTGAAATCGGGTTTCGCTAGCAGCGGACTGTCATGATAAATGTGAAAAACAAACAAGTTCGTTGTCGACGAAACCTGCATCATGTGTCGGACAAACAGCTCTT----------------TTGATTGTGTGAAAATATCAATGAA-----ASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
....................................................................................................TTCGTTGTCGACGAAACCTGC........................................................................21118076.001807644012001826113196
....................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................................2219560.0095606753685106281484
....................................................................................................TTCGTTGTCGACGAAACCTG.........................................................................2015515.00551552657205173
..................................................CGGGTTTCGCTAGCAGCGGACT.........................................................................................................................2212100.00210055320604941
....................................................................................................TTCGTTGTCGACGAAACCTGCAA......................................................................231784.007846443201989
....................................................................................................TTCGTTGTCGACGAAACCT..........................................................................191432.00432402100020
....................................................................................................TTCGTTGTCGACGAAACC...........................................................................181326.003263250001
....................................................................................................TTCGTTGTCGACGAAACCTGCG.......................................................................221196.001961881124
..................................................CGGGTTTCGCTAGCAGCGGAC..........................................................................................................................211170.0017014700815
....................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................................231122.001221211000
.................................................TCGGGTTTCGCTAGCAGCGGACT.........................................................................................................................231109.001093301867
....................................................................................................TTCGTTGTCGACGAAACCTGA........................................................................21182.00821020070
....................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................................22178.0078740004
....................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................................23175.00752650440
.....................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................................21168.0068658004
.................................................TCGGGTTTCGCTAGCAGCGGAC..........................................................................................................................22166.00664500021
....................................................................................................TTCGTTGTCGACGAAACCTGT........................................................................21157.00571500141
....................................................................................................TTCGTTGTCGACGAAACCTGG........................................................................21151.0051490002
..................................................CGGGTTTCGCTAGCAGCGGACC.........................................................................................................................22147.0047440012
....................................................................................................TTCGTTGTCGACGAAACCTGCC.......................................................................22142.0042331008
.....................................................................................................TCGTTGTCGACGAAACCTGC........................................................................20135.00352170016
.......................................................................................................GTTGTCGACGAAACCTGCA.......................................................................19125.0025500020
.......................................................................................................GTTGTCGACGAAACCTGC........................................................................18123.0023300119
....................................................................................................TTCGTTGTCGACGAAACCTGCAG......................................................................23121.0021180003
...................................................GGGTTTCGCTAGCAGCGGACT.........................................................................................................................21120.0020000515
......................................................................................................CGTTGTCGACGAAACCTGC........................................................................19118.0018400014
........................................................................................................TTGTCGACGAAACCTGCA.......................................................................18114.0014130001
....................................................................................................TTCGTTGTCGACGAAACCTGCAAA.....................................................................24114.0014130001
.................................................TCGGGTTTCGCTAGCAGCGGA...........................................................................................................................21113.0013000013
..................................................CGGGTTTCGCTAGCAGCGGACG.........................................................................................................................22112.0012120000
........................................................................................................TTGTCGACGAAACCTGCAA......................................................................1918.00880000
......................................................................................................CGTTGTCGACGAAACCTGCA.......................................................................2018.00831004
....................................................................................................TTCGTTGTCGACGAAACCTC.........................................................................2017.00701015
.......................................................................................................GTTGTCGACGAAACCTGCAA......................................................................2016.00640002
........................................................................GTCATGATAAATGTGAAAAACA...................................................................................................2216.00620004
....................................................................................................TTCGTTGTCGACGAAACCC..........................................................................1925.5011110000
.....................................................................................................TCGTTGTCGACGAAACCTG.........................................................................1915.00503002
....................................................................................................TTCGTTGTCGACGAAACCG..........................................................................1914.00440000
...................................................................................................GTTCGTTGTCGACGAAACCTGCC.......................................................................2314.00440000
..................................................CGGGTTTCGCTAGCAGCGGA...........................................................................................................................2014.00400004
...................................................................................................GTTCGTTGTCGACGAAACCTGC........................................................................2213.00300030
....................................................................................................TTCGTTGTCGACGAAACCTGCACT.....................................................................2413.00330000
.....................................................................................................TCGTTGTCGACGAAACCTGCAA......................................................................2213.00320001
...................................................................................................GTTCGTTGTCGACGAAACCTGCT.......................................................................2313.00330000
.................................................TCGGGTTTCGCTAGCAGCGG............................................................................................................................2013.00310002
.................................................TCGGGTTTCGCTAGCAGCGGACC.........................................................................................................................2312.00220000
..................................................CGGGTTTCGCTAGCAGCGGAA..........................................................................................................................2112.00200002
......................................................TTTCGCTAGCAGCGGACT.........................................................................................................................1812.00220000
........................................................................................................TTGTCGACGAAACCTGCAT......................................................................1912.00220000
.................................................TCGGGTTTCGCTAGCAGCGGAT..........................................................................................................................2212.00200002
....................................................................................................TTCGTTGTCGACGAAACCTCA........................................................................2112.00201010
......................................................TTTCGCTAGCAGCGGACC.........................................................................................................................1811.00110000
........................................................................................................TTGTCGACGAAACCTGCGA......................................................................1911.00110000
........................................................................GTCATGATAAATGTGAAA.......................................................................................................1811.00110000
droVir3
A--------------------------------ACAATCTACATTGAACTCAGATTTCGTCAGCAGCGGGCTGTGATGATT----------ATGAACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT---------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
....................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................................22110262.00102622510156324420310801000001154741281577543286308299390470143840321853202770010250010000000000102122201875870001833910331281016920221610
....................................................................................................TTCGTTGTCGACGAAACCTGC........................................................................2117933.0079331510733331290290467350001738527272613427231128078670020099111481441189000014000001000000100011002012349000510429000010936
....................................................................................................TTCGTTGTCGACGAAACCTG.........................................................................2013543.003543301553169105000000001651687317513710843073450100026728411860100600000000000000000000125000000132100010000
..................................................CAGATTTCGTCAGCAGCGGGCT.........................................................................................................................2212349.002349591635111602314090000191013211743161400000111141902300000130110100006265127421380491401900001505124211401
..................................................CAGATTTCGTCAGCAGCGGGC..........................................................................................................................211974.0097423806820100010000421200121100000321401400000200000000000010310752521100000002000000000
....................................................................................................TTCGTTGTCGACGAAACCT..........................................................................191381.003812237421000000000078913510182000000110002000000000000000000000006004000000003000000010
....................................................................................................TTCGTTGTCGACGAAACCTGCAA......................................................................231357.0035705113600000000002520612540192112101452811241030000000000000000000001190000201763520303761712
..................................................CAGATTTCGTCAGCAGCGGGCC.........................................................................................................................221266.002661124905000000000000000000000000000000000000000000000000000000010000000000000000000
.....................................TCTACATTGAACTCAGATTTCGTCAGC.................................................................................................................................271198.0019800000000100000000000000003300017000014700000000000000000000000000000000000000000000
.....................................TCTACATTGAACTCAGATTTCGTCAGCA................................................................................................................................281163.0016300000000000000000000000002000010000013300000000000000000000000000000000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCC.......................................................................221162.00162091501000000003283611111456000002004010000040000000000000000000010100010000000000000
..................................................CAGATTTCGTCAGCAGCGGGCTT........................................................................................................................231146.00146196300000010000010111027000003401020000040000000000000000000012600000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................................221124.00124177510000000000150212013001002001000000000000000000000000020013000001000201000011
..................................................CAGATTTCGTCAGCAGCG.............................................................................................................................181111.0011129900000000000000000010000000000202000000000000000000000000005000000000000000000
...............................................................................TT----------ATGAACAAGTTCGTTGTCGACGA...............................................................................251110.001100000000050000000000000000120001500007800000000000000000000000000000000000000000000
....................................................................................................TTCGTTGTCGACGAAACC...........................................................................181106.0010619105000000000010100001000000000000000000000000000000001111100000000000100000000
..................................................CAGATTTCGTCAGCAGCGGG...........................................................................................................................20196.00961124004000000001011113200000079160131000030000000000000000000020500000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGT........................................................................21186.008605200300000000690363049000002100020000010000000000000000000030000000000000000000
..................................................CAGATTTCGTCAGCAGCGG............................................................................................................................19178.007833610040000000000000060000000120108000005000000000000000000009200000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................................23176.0076385000000000006232231220000021121000000000000000000000000020016100000000000001100
..................................................CAGATTTCGTCAGCAGCGGGCG.........................................................................................................................22172.007246400000000000000000000000000000000000000000000000000000000301000000000000000000
.....................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................................21166.006601600000000000012000000100000000100000000000000000000000000000000000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCG.......................................................................22157.005724610000000000000001000000000010000000000000000000000000000006000000000000000000
...............................................................................TT----------ATGAACAAGTTCGTTGTCGACGAA..............................................................................26153.0053000000002000000000000000013000700003100000000000000000000000000000000000000000000
..................................................CAGATTTCGTCAGCAGCGGT...........................................................................................................................20145.0045012000204000000000000200000000002010000000000000000000000000014800000000000000000
.....................................................................................................TCGTTGTCGACGAAACCTGC........................................................................20144.004400380000000000000100000200000000000000000000000000000000000003000000000000000000
...............................................................................TT----------ATGAACAAGTTCGTTGTCGACGAAA.............................................................................27144.004400000000000000000000000006000200003600000000000000000000000000000000000000000000
..................................................CAGATTTCGTCAGCAGCGT............................................................................................................................19137.0037022100000000000100000010000001000000000010000000000000000000010000000000000000000
.....................................TCTACATTGAACTCAGATTTCGTCA...................................................................................................................................25136.003600000000000000000000000006000600002400000000000000000000000000000000000000000000
..................................................CAGATTTCGTCAGCAGCGTT...........................................................................................................................20133.0033016000100000000001001210000000000000000000000000000000000000011000000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGG........................................................................21129.002902610000000000001000000000000000000000000000000000000000000001000000000000000000
..................................................CAGATTTCGTCAGCAGCGGGCTC........................................................................................................................23126.00269200010000000000000010000000100202000002000000000000000000300200000010000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................................23125.002511022000000000012000001000000010000000000000000000000000000001000010000000001002
..................................................CAGATTTCGTCAGCAGCGGGT..........................................................................................................................21121.00210520000104000001001000100000010100000000000000000000000000004000000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGA........................................................................21121.00210310000000000011104102000000000000000000000000000000000000007000000000000000000
.......................................................................................................GTTGTCGACGAAACCTGC........................................................................18120.00200100000000000013112102200000000100000000000000000000000001004000000000000000000
...................................................AGATTTCGTCAGCAGCGGGCT.........................................................................................................................21119.001901400000000000010000000000000000101000000000000000000000000002000000000000000000
..................................................CAGATTTCGTCAGCAGCGGGCTTA.......................................................................................................................24116.001601600000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTT.........................................................................20114.00140140000000000000001102100000000000000000000000000000000001003000000000000000000
..................................................CAGATTTCGTCAGCAGCGGTT..........................................................................................................................21113.00130300000001000000000000000000100001000000000000000000000000007000000000000000000
.......................................................................................................GTTGTCGACGAAACCTGCA.......................................................................19112.00120000000000000010011001200000001100000001000000000000000000003000000000000000000
..................................................CAGATTTCGTCAGCAGCGTA...........................................................................................................................20110.00100500000000000000100000000000000000000000000000000000000000004000000000000000000
.....................................................................................................TCGTTGTCGACGAAACCTG.........................................................................19110.00100090000000000000000000000000000000000000000000000000000000001000000000000000000
....................................................................................................TTCGTTGTCGACGAAACCC..........................................................................1919.0090900000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TT----------ATGAACAAGTTCGTTGTCGACG................................................................................2419.0090000000000000000000000000200010000600000000000000000000000000000000000000000000
..................................................CAGATTTCGTCAGCAGCGGGCTTC.......................................................................................................................2418.0080700000000000000000000000000000000000000000000000000000000001000000000000000000
........................................................................................................TTGTCGACGAAACCTGCA.......................................................................1818.0080500000000000000000000000000001100000000000000000000000000001000000000000000000
..................................................CAGATTTCGTCAGCAGCGGGCTA........................................................................................................................2318.0080600000000000010000000000000000000000000000000000000000000000000000010000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCAG......................................................................2317.0070310000000000000100000000000000100000000000000000000000000001000000000000000000
......................................................................................................CGTTGTCGACGAAACCTGCA.......................................................................2017.0071030000000000000000000000000110000000000000000000000000000001000000000000000000
..................................................CAGATTTCGTCAGCAGCT.............................................................................................................................1817.0070700000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TCTACATTGAACTCAGATTTCGTCAG..................................................................................................................................2616.0060000000010000000000000000000020000300000000000000000000000000000000000000000000
..................................................CAGATTTCGTCAGCAGCGTTT..........................................................................................................................2136.001805000000000000000000000000000000000000000000000000000000000011200000000000000000
............................................................................................TGAACAAGTTCGTTGTCGACGAAACC...........................................................................2616.0060000000000000000000000000000000000600000000000000000000000000000000000000000000
..................................................CAGATTTCGTCAGCAGCGGGCTGT.......................................................................................................................2416.0060600000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................TT----------ATGAACAAGTTCGTTGTCGACGAAAC............................................................................2815.0050000000000000000000000000000000000500000000000000000000000000000000000000000000
.....................................................................................................TCGTTGTCGACGAAACCTGCAA......................................................................2215.0050300000000000010000000000000000000000000000000000000000000000000000001000000000
....................................................................................................TTCGTTGTCGACGAAACCTC.........................................................................2015.0050000000000000000000000100000000000000000000000000000000000004000000000000000000
..................................................CAGATTTCGTCAGCAGCGGC...........................................................................................................................2015.0050300000000000000000000000000000000000000000000000000000000002000000000000000000
...............................................................................TT----------ATGAACAAGTTCGTTGTCGACGAAACC...........................................................................2915.0050000000000000000000000000400000000100000000000000000000000000000000000000000000
..................................................CAGATTTCGTCAGCAGCGGGA..........................................................................................................................2114.0040200000000000000000100000000000000000000000000000000000000001000000000000000000
..................................................CAGATTTCGTCAGCAGCGGGG..........................................................................................................................2114.0040400000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................CAGATTTCGTCAGCAGCGA............................................................................................................................1914.0040100000000000000000000000000000000000000000000000000000000003000000000000000000
....................................................................................................TTCGTTGTCGACGAAAC............................................................................1714.0040000000000000000000000000000000000000000000000000000000000004000000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCATT.....................................................................2414.0040101000000000000000000000000000000000000000000000000000000001000000000100000000
...............................................................................TT----------ATGAACAAGTTCGTTGTCGA..................................................................................2213.0030000000000000000000000000000000000300000000000000000000000000000000000000000000
.................................................TCAGATTTCGTCAGCAGCGGGC..........................................................................................................................2213.0030200000000000000000010000000000000000000000000000000000000000000000000000000000
..................................................CAGATTTCGTCAGCAGCGGTG..........................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000003000000000000000000
......................................................................................................CGTTGTCGACGAAACCTG.........................................................................1813.0030020000000000000000000000000010000000000000000000000000000000000000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCCC......................................................................2313.0031000000000000000000000000000110000000000000000000000000000000000000000000000000
...................................................AGATTTCGTCAGCAGCGGGCTT........................................................................................................................2213.0030100000000000000000000000000000000000000000000000000000000001100000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTA.........................................................................2013.0030110000000000000000000100000000000000000000000000000000000000000000000000000000
...............................................................................TT----------ATGAACAAGTTCGTTGTCGAC.................................................................................2313.0030000000000000000000000000100000000200000000000000000000000000000000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCCA......................................................................2313.0030000000000000010001000000000000000100000000000000000000000000000000000000000000
..................................................CAGATTTCGTCAGCAGCGGGAC.........................................................................................................................2212.0020100000000000000000010000000000000000000000000000000000000000000000000000000000
..................................................CAGATTTCGTCAGCAGCGGA...........................................................................................................................2012.0020100000000000000000000000000000000000000000000000000000000001000000000000000000
.........................................CATTGAACTCAGATTTCGTCAGCAGC..............................................................................................................................2612.0020000000000000000000000000000000000200000000000000000000000000000000000000000000
........................................................................GTGATGATT----------ATGAACAAG.............................................................................................1812.0020000000000000001000000000000000100000000000000000000000000000000000000000000000
.....................................TCTACATTGAACTCAGATTTCGTC....................................................................................................................................2412.0020000000000000000000000000100000000100000000000000000000000000000000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCTA......................................................................2312.0020000000020000000000000000000000000000000000000000000000000000000000000000000000
..................................................CAGATTTCGTCAGCAGCGGGCTAA.......................................................................................................................2412.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................CAGATTTCGTCAGCAGCGGTA..........................................................................................................................2112.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................CAGATTTCGTCAGCAGCGGGCA.........................................................................................................................2212.0020100000000000000000000000000000000000000000000000000000000001000000000000000000
.....................................................ATTTCGTCAGCAGCGGGCT.........................................................................................................................1912.0020010000000000000000000100000000000000000000000000000000000000000000000000000000
.................................................TCAGATTTCGTCAGCAGCGGGCT.........................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000002000000000000000000
....................................................................................................TTCGTTGTCGACGAAACCGC.........................................................................2012.0020000000000000000000000000000000000000000000000000000000000002000000000000000000
.......................................................................................................GTTGTCGACGAAACCTGCT.......................................................................1912.0020000000000000010000000000000010000000000000000000000000000000000000000000000000
..................................................CAGATTTCGTCAGCAGCGGGCTG........................................................................................................................2312.0020110000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
T---------------------GGATAAAAATAGTAATCTACATTGAACTCAGGTTTCGTTAGCAACGGGCTGTGATGATTA--------AAAGAACAAGTTCGTTGTCGACGAAACCTGCATGCTATGT-GGAGAGGCAACCATTCT---------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
....................................................................................................TTCGTTGTCGACGAAACCTGC........................................................................2112880.00288043717986126316116
....................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................................2212537.002537839273316007337
..................................................CAGGTTTCGTTAGCAACGGGCT.........................................................................................................................221334.0033442934562083
....................................................................................................TTCGTTGTCGACGAAACCTG.........................................................................201322.003221410809830
....................................................................................................TTCGTTGTCGACGAAACCTGT........................................................................211159.0015940698501
.....................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................................21186.00867801340
..................................................CAGGTTTCGTTAGCAACGGGC..........................................................................................................................21182.00822300770
....................................................................................................TTCGTTGTCGACGAAACCTGCAA......................................................................23163.00632501116110
..................................................CAGGTTTCGTTAGCAACGGGCC.........................................................................................................................22153.00530000530
.....................................................................................................TCGTTGTCGACGAAACCTGC........................................................................20149.00494701100
....................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................................23148.0048190111521
....................................................................................................TTCGTTGTCGACGAAACCT..........................................................................19143.0043200111110
....................................................................................................TTCGTTGTCGACGAAACCTGCC.......................................................................22137.00371020790
....................................................................................................TTCGTTGTCGACGAAACCTGA........................................................................21121.00210021900
....................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................................22117.0017402470
.....................................................................................................TCGTTGTCGACGAAACCTG.........................................................................19113.00131300000
...................................................AGGTTTCGTTAGCAACGGGCT.........................................................................................................................21111.0011111440
....................................................................................................TTCGTTGTCGACGAAACC...........................................................................18110.0010100090
.......................................................................................................GTTGTCGACGAAACCTGC........................................................................1817.007101500
.....................................................................................................TCGTTGTCGACGAAACCTGCAA......................................................................2217.007201400
..................................................CAGGTTTCGTTAGCAACGGGCTT........................................................................................................................2316.006001140
......................................................................................................CGTTGTCGACGAAACCTGC........................................................................1915.005301100
......................................................................................................CGTTGTCGACGAAACCTGCA.......................................................................2015.005500000
....................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................................2315.005100130
....................................................................................................TTCGTTGTCGACGAAACCTGCG.......................................................................2215.005001400
....................................................................................................TTCGTTGTCGACGAAAC............................................................................1713.003000300
..................................................CAGGTTTCGTTAGCAACGGG...........................................................................................................................2013.003001200
....................................................................................................TTCGTTGTCGACGAAACCTT.........................................................................2012.002001100
...................................................AGGTTTCGTTAGCAACGGGC..........................................................................................................................2012.002000110
....................................................................................................TTCGTTGTCGACGAAACCTGG........................................................................2112.002101000
....................................................................................................TTCGTTGTCGACGAAACCTGCATT.....................................................................2412.002101000
.......................................................................................................GTTGTCGACGAAACCTGCA.......................................................................1912.002002000
..................................................CAGGTTTCGTTAGCAACGGGCTC........................................................................................................................2312.002000020
........................................................................................................TTGTCGACGAAACCTGCA.......................................................................1812.002001100
....................................................................................................TTCGTTGTCGACGAAACCTGAC.......................................................................2211.001000010
......................................................................................................CGTTGTCGACGAAACCTGCAA......................................................................2111.001100000
....................................................................................................TTCGTTGTCGACGAAACCTGCTGA.....................................................................2411.001000100
...................................................................................................GTTCGTTGTCGACGAAACCTG.........................................................................2111.001100000
....................................................................................................TTCGTTGTCGACGAAACCTGCATCT....................................................................2511.001000100
...................................................................................................GTTCGTTGTCGACGAAACCTGCA.......................................................................2311.001100000
..................................................CAGGTTTCGTTAGCAACGGGT..........................................................................................................................2111.001000100
.....................................................................................................TCGTTGTCGACGAAACCTGCACC.....................................................................2311.001100000
.....................................................GTTTCGTTAGCAACGGGCT.........................................................................................................................1911.001000010
....................................................................................................TTCGTTGTCGACGAAACCTGCCA......................................................................2311.001001000
..................................................CAGGTTTCGTTAGCAACGGGCTA........................................................................................................................2311.001001000
droGri2
T--------------------------A---GTGTGTTCCACATTGAGCTCGGGTTTCGTCAGCAGCGGGCTGTGATGACT---------AAAAAACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT---------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
....................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................................221105.001051050
....................................................................................................TTCGTTGTCGACGAAACCTGC........................................................................21183.0083794
....................................................................................................TTCGTTGTCGACGAAACCTG.........................................................................20131.0031310
.....................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................................21110.0010100
....................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................................2316.00660
....................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................................2214.00440
.....................................................................................................TCGTTGTCGACGAAACCTGC........................................................................2013.00330
....................................................................................................TTCGTTGTCGACGAAACCT..........................................................................1913.00330
.....................................................................................................TCGTTGTCGACGAAACCTG.........................................................................1913.00330
.....................................................................................................TCGTTGTCGACGAAACCTGCAT......................................................................2212.00220
......................................................................................................CGTTGTCGACGAAACCTGC........................................................................1912.00220
...................................................................................................GTTCGTTGTCGACGAAACCTGCA.......................................................................2311.00110
....................................................................................................TTCGTTGTCGACGAAACC...........................................................................1811.00110
....................................................................................................TTCGTTGTCGACGAAACCTGCACT.....................................................................2411.00110
....................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................................2311.00110
dp5
A-----------------------------------ATCCACATTGAAATCGGGTTTCGTTAACAGCGGGCTGTTATGAATA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAGAAACAACAAATGCAACAAAAAACTGTGACA--------------------AA-----ASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
....................................................................................................TTCGTTGTCGACGAAACCTGC........................................................................21111733.001173321527144774616518701100268
....................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................................2219261.009261220469095098194789301219
....................................................................................................TTCGTTGTCGACGAAACCTG.........................................................................2012235.00223551263672802290004
....................................................................................................TTCGTTGTCGACGAAACCTGCAA......................................................................231430.004301863722856100012
....................................................................................................TTCGTTGTCGACGAAACCT..........................................................................191407.0040726823110240000
..................................................CGGGTTTCGTTAACAGCGGGCT.........................................................................................................................221291.00291125919148584000
....................................................................................................TTCGTTGTCGACGAAACC...........................................................................181285.00285019275000000
.....................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................................211185.00185017608010000
....................................................................................................TTCGTTGTCGACGAAACCTGT........................................................................211157.0015701502801131000
....................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................................231154.0015401801091240002
.....................................................................................................TCGTTGTCGACGAAACCTGC........................................................................201143.00143013802030000
....................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................................221140.0014001241004180002
....................................................................................................TTCGTTGTCGACGAAACCTGCC.......................................................................221129.00129043994190000
.....................................................................................................TCGTTGTCGACGAAACCTG.........................................................................191125.00125012401000000
....................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................................231112.0011207794040000
....................................................................................................TTCGTTGTCGACGAAACCC..........................................................................19146.004600046000000
..................................................CGGGTTTCGTTAACAGCGGGC..........................................................................................................................21127.002700231370002
..................................................CGGGTTTCGTTAACAGCGGGCC.........................................................................................................................22123.002300167000000
....................................................................................................TTCGTTGTCGACGAAACCTGA........................................................................21118.001804040100000
....................................................................................................TTCGTTGTCGACGAAACCTGCAG......................................................................23118.00180223030008
....................................................................................................TTCGTTGTCGACGAAACCTT.........................................................................20115.001501002030000
....................................................................................................TTCGTTGTCGACGAAACCTGG........................................................................21113.001301010200000
..................................................CGGGTTTCGTTAACAGCGGG...........................................................................................................................20112.00120002190000
.....................................................................................................TCGTTGTCGACGAAACCTGCAA......................................................................22112.001201001010000
......................................................................................................CGTTGTCGACGAAACCTGCA.......................................................................20110.00100900010000
......................................................................................................CGTTGTCGACGAAACCTGC........................................................................19110.00100603000001
.....................................................................................................TCGTTGTCGACGAAACCT..........................................................................1818.0080800000000
....................................................................................................TTCGTTGTCGACGAAACCTGCATT.....................................................................2417.0070114000001
....................................................................................................TTCGTTGTCGACGAAACCTGCG.......................................................................2217.0070401020000
.......................................................................................................GTTGTCGACGAAACCTGC........................................................................1817.0070201220000
....................................................................................................TTCGTTGTCGACGAAACCTGTT.......................................................................2216.0060201030000
....................................................................................................TTCGTTGTCGACGAAACCTGCAAA.....................................................................2415.0050013010000
....................................................................................................TTCGTTGTCGACGAAACCTGCCA......................................................................2315.0050103010000
.......................................................................................................GTTGTCGACGAAACCTGCA.......................................................................1915.0050001100003
.....................................................................................................TCGTTGTCGACGAAACCTGT........................................................................2013.0030300000000
....................................................................................................TTCGTTGTCGACGAAACCTA.........................................................................2013.0030100020000
......................................................................................................CGTTGTCGACGAAACCTG.........................................................................1812.0020200000000
...................................................GGGTTTCGTTAACAGCGGGCT.........................................................................................................................2112.0020000110000
....................................................................................................TTCGTTGTCGACGAAACCTGCCC......................................................................2312.0020101000000
....................................................................................................TTCGTTGTCGACGAAACCTGAC.......................................................................2212.0020011000000
.....................................................................................................TCGTTGTCGACGAAACCTGCC.......................................................................2112.0020200000000
.....................................................................................................TCGTTGTCGACGAAACCTGCAC......................................................................2212.0020200000000
..................................................CGGGTTTCGTTAACAGCGG............................................................................................................................1912.0020000011000
....................................................................................................TTCGTTGTCGACGAAACCTC.........................................................................2011.0010001000000
droPer2
A-----------------------------------ATCCACATTGAAATCGGGTTTCGTTAACAGCGGGCTGTTATGAATA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAGAAACAACAAATGCAAAAAAAAACTGTGACA--------------------AA-----ASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
....................................................................................................TTCGTTGTCGACGAAACCTGC........................................................................2113596.0035962637411113461630109
....................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................................2211470.001470126287505164883
....................................................................................................TTCGTTGTCGACGAAACCTG.........................................................................201616.006162426011341970
..................................................CGGGTTTCGTTAACAGCGGGCT.........................................................................................................................221342.0034214112475983
....................................................................................................TTCGTTGTCGACGAAACCTGT........................................................................211202.00202090351517
....................................................................................................TTCGTTGTCGACGAAACCTGCAA......................................................................231114.001142515030440
....................................................................................................TTCGTTGTCGACGAAACCT..........................................................................19147.004712209150
..................................................CGGGTTTCGTTAACAGCGGGC..........................................................................................................................21144.004418027170
.....................................................................................................TCGTTGTCGACGAAACCTGC........................................................................20144.00440410210
....................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................................23137.003715115141
.....................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................................21130.00300270030
....................................................................................................TTCGTTGTCGACGAAACCTGCC.......................................................................22130.00301300980
.....................................................................................................TCGTTGTCGACGAAACCTG.........................................................................19125.00251230100
....................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................................22124.00241141350
..................................................CGGGTTTCGTTAACAGCGGG...........................................................................................................................20120.00200006113
....................................................................................................TTCGTTGTCGACGAAACCTGA........................................................................21119.00190107101
..................................................CGGGTTTCGTTAACAGCGGGCC.........................................................................................................................22111.0011900101
.......................................................................................................GTTGTCGACGAAACCTGCA.......................................................................1919.009210222
......................................................................................................CGTTGTCGACGAAACCTGC........................................................................1918.008020600
....................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................................2317.007120220
....................................................................................................TTCGTTGTCGACGAAACCTGG........................................................................2117.007230110
..................................................CGGGTTTCGTTAACAGCGGGCG.........................................................................................................................2216.006600000
.......................................................................................................GTTGTCGACGAAACCTGC........................................................................1815.005001220
....................................................................................................TTCGTTGTCGACGAAACCTGCG.......................................................................2215.005200120
....................................................................................................TTCGTTGTCGACGAAACCTCT........................................................................2114.004000220
..................................................CGGGTTTCGTTAACAGCGG............................................................................................................................1913.003000030
.....................................................................................................TCGTTGTCGACGAAACCTGCAA......................................................................2213.003020100
...................................................GGGTTTCGTTAACAGCGGGCT.........................................................................................................................2113.003001020
....................................................................................................TTCGTTGTCGACGAAACCTTT........................................................................2112.002010010
..................................................CGGGTTTCGTTAACAGCG.............................................................................................................................1812.002000020
..................................................CGGGTTTCGTTAACAGCGGGT..........................................................................................................................2112.002000110
....................................................................................................TTCGTTGTCGACGAAACC...........................................................................1812.002200000
......................................................................................................CGTTGTCGACGAAACCTGCA.......................................................................2012.002010010
....................................................................................................TTCGTTGTCGACGAAACCTGCAAA.....................................................................2412.002000110
....................................................................................................TTCGTTGTCGACGAAACCTGTT.......................................................................2212.002000110
.................................................TCGGGTTTCGTTAACAGCGGGC..........................................................................................................................2212.002000110
.....................................................................................................TCGTTGTCGACGAAACCT..........................................................................1812.002020000
....................................................................................................TTCGTTGTCGACGAAACCTT.........................................................................2012.002000200
..................................................CGGGTTTCGTTAACAGCGGT...........................................................................................................................2012.002000020
....................................................................................................TTCGTTGTCGACGAAACCTGTC.......................................................................2211.001000100
....................................................................................................TTCGTTGTCGACGAAACCTGGC.......................................................................2211.001010000
....................................................................................................TTCGTTGTCGACGAAACCTCA........................................................................2111.001010000
....................................................................................................TTCGTTGTCGACGAAACCTGTTC......................................................................2311.001000010
........................................................................GTTATGAATA--------AATCAACAAG.............................................................................................2011.001000010
....................................................................................................TTCGTTGTCGACGAAACCTC.........................................................................2011.001000010
droAna3
A-----------------------------------GTCCTCACTGAAGCCGGGTTTCGTTAACAGCGGGCTGTCATTTCGA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAATAA-------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
....................................................................................................TTCGTTGTCGACGAAACCTGC........................................................................21120626.0020626831139539455018608
....................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................................2212509.002509120527193614659
....................................................................................................TTCGTTGTCGACGAAACCTG.........................................................................201964.00964451201782331
..................................................CGGGTTTCGTTAACAGCGGGCT.........................................................................................................................221670.0067012312292603
....................................................................................................TTCGTTGTCGACGAAACCTGT........................................................................211318.003185001146193
....................................................................................................TTCGTTGTCGACGAAACCTGA........................................................................211224.0022400070217
....................................................................................................TTCGTTGTCGACGAAACCTGCAA......................................................................231162.001623039120072
.....................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................................211131.0013113100000
....................................................................................................TTCGTTGTCGACGAAACCT..........................................................................191130.00130292075024
.....................................................................................................TCGTTGTCGACGAAACCTGC........................................................................201108.0010895000013
....................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................................23164.0064112021426
..................................................CGGGTTTCGTTAACAGCGGGC..........................................................................................................................21160.00601304052
....................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................................22137.00377118020
.....................................................................................................TCGTTGTCGACGAAACCTG.........................................................................19131.00313100000
....................................................................................................TTCGTTGTCGACGAAACCTGCC.......................................................................22121.0021510708
.......................................................................................................GTTGTCGACGAAACCTGC........................................................................18117.00171000016
...................................................GGGTTTCGTTAACAGCGGGCT.........................................................................................................................21115.00150020013
....................................................................................................TTCGTTGTCGACGAAACCTT.........................................................................20114.0014300407
....................................................................................................TTCGTTGTCGACGAAACCTGG........................................................................21114.00141001012
......................................................................................................CGTTGTCGACGAAACCTGCA.......................................................................20111.00111100000
....................................................................................................TTCGTTGTCGACGAAACCTGCG.......................................................................22110.0010500401
....................................................................................................TTCGTTGTCGACGAAACC...........................................................................18110.0010090001
....................................................................................................TTCGTTGTCGACGAAACCTC.........................................................................2019.009000009
..................................................CGGGTTTCGTTAACAGCGGGCC.........................................................................................................................2219.009080001
......................................................................................................CGTTGTCGACGAAACCTGC........................................................................1919.009600003
..................................................CGGGTTTCGTTAACAGCGGG...........................................................................................................................2018.008000008
....................................................................................................TTCGTTGTCGACGAAACCTGCAG......................................................................2316.006100203
..................................................CGGGTTTCGTTAACAGCG.............................................................................................................................1814.004000103
....................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................................2314.004040000
......................................................................................................CGTTGTCGACGAAACCTG.........................................................................1814.004400000
....................................................................................................TTCGTTGTCGACGAAACCTGCAAA.....................................................................2414.004130000
.....................................................................................................TCGTTGTCGACGAAACCT..........................................................................1813.003300000
....................................................................................................TTCGTTGTCGACGAAACCTGTT.......................................................................2213.003000201
.....................................................................................................TCGTTGTCGACGAAACCTGCAA......................................................................2213.003300000
.....................................................................................................TCGTTGTCGACGAAACCTGT........................................................................2012.002100100
....................................................................................................TTCGTTGTCGACGAAACCTTA........................................................................2112.002000002
....................................................................................................TTCGTTGTCGACGAAAC............................................................................1712.002000200
....................................................................................................TTCGTTGTCGACGAAACCC..........................................................................1912.002000002
...................................................................................................GTTCGTTGTCGACGAAACCTGCA.......................................................................2312.002200000
....................................................................................................TTCGTTGTCGACGAAACCTGCAAT.....................................................................2412.002100001
....................................................................................................TTCGTTGTCGACGAAACCTGCATTAG...................................................................2612.002000002
..................................................CGGGTTTCGTTAACAGCGGT...........................................................................................................................2011.001000010
....................................................................................................TTCGTTGTCGACGAAACCTGGT.......................................................................2211.001000001
..................................................CGGGTTTCGTTAACAGCGGGA..........................................................................................................................2111.001000001
....................................................................................................TTCGTTGTCGACGAAACCTGCATT.....................................................................2411.001000100
.....................................................................................................TCGTTGTCGACGAAACCTGCAT......................................................................2211.001000100
...............................................................................................ACAAGTTCGTTGTCGACGAAACCTGC........................................................................2611.001000001
droBip1
G------------TTAA-----GTGTTATGTGAATTATCCTCACTGAAGCCGGGTTTCGTTAACAGCGGACTGTCATTTCGA--------AATCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAATGA-------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
A-----------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGTCTATAAT--------------TTTAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAAACAACGTTC-A-----AAATTTGTGAAA--------------------AATTAGAGSizeHit CountTotal NormTotal
No Reads
droFic1
A--------------------------GTTACAAAAATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTTTATTGT--------TATTAGCAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAACTCAACATT----ACAAGCAGCCGTTACGATCTAATTAAAA---------T-----ASizeHit CountTotal NormTotal
No Reads
droEle1
A--------------------------ATCAAAGAAGTCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTATAACC---------GTTTGACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAA----------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
A-----------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACAAC-A--------ATTGGACAAGTTCGTTGTCGACGAAACCTGCATACTGTGT-GGAAAATCAAC---------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
A-----------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACACTCT--------TTTCAACGAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCT------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
A-----------------------------------ATCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTACGTACT--------TTTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCT------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
A------------------------------------TCCTCACTGAAGTCGGGTTTCGTTAACAGCGGGCTGTTCTTTACT--------TTTCAACTAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTT-A---------------------------ACTATCAACGCT-----ASizeHit CountTotal NormTotal
No Reads
dm3
A------------------------------------TCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCT------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
....................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................................221126486.00126486000077021131477221461804000472390000600067710441104023111200010000000000001010007240000000000000000066342222194271192279080515687501393710114546640132442175295507728306763312962583218267671263101332121153661482109611448446829511392812751041378125000000020015130300100100000000000000061845405035351372857449711044268840201266683010000078901808000060600000000000000000132112130210370031138005965055430131064374115121671000282200120367280018343227100104302050200218415823541915181314216382000167022560003022100011200231146740601023400
....................................................................................................TTCGTTGTCGACGAAACCTGC........................................................................211114701.0011470100005083010533270723020970000504147178296923781680000000101000000100000112000000000000000001010870701360111717127711877293458035111181754112109981621563585040101471315263522911534121131800209909692646938738577495900000000009135000100300000000000000036803390019532052873272482321081472145677968600000823154125000018019000000000000000003601400000000500110000132201242725651713142471873912125455109638140030183271085361061007254101001008011218925512198481543159365220020217112421602001247140011169068393161478121920014800
....................................................................................................TTCGTTGTCGACGAAACCTG.........................................................................20124654.002465400005400000030014005600005000219359739196600000000000000000000001100000000000000000000002466200007421523113057214170148226530082686391142180565102716612310441364835160000000000000000000000000000000000001679175407105479111234010892622009308417600000239860100005000000000000000000000020000000000000000210161553000463151220000241000001110223100000000000010013013715435801331100005024000000000000000019600100000000
....................................................................................................TTCGTTGTCGACGAAACCTGCAA......................................................................2318318.008318000076101170132010022300000000000000000000000000000000000000000000000000000000021211251617710152873131328340892510253161265840094983755110612028131951501401412340714854800000000002000000000000000000000000051048202311010024471734210032612000002783000000000000000000000000000100000000005005915002001200100191022110000012001010100192500002110100000002912216703322000004041000000000002002006500000000100
..................................................CGGGTTTCGTTAGCAGCGGGCT.........................................................................................................................2216481.006481000020010000000000000000010540000000000000000000000000003000000000000000000000001110340070125241500217125600001233032610223101111810300209140000000000120371000000005000000000000335102895202812175652995200000747060000109000000000000000001001000000015013000055540155740142840101010294201004501201549311001667170023006474202481082181802485012105022351530123135040333943665241477275103972913186432182641042041400
....................................................................................................TTCGTTGTCGACGAAACCTGCATC.....................................................................2415384.005384000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000033752008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TTCGTTGTCGACGAAACCT..........................................................................1913437.003437000000000000000000100000010018731603300000000000000000000000000000000000000000000007000000011037305341212201353100045144200030201422132101043698105000000000000000000000000000000000000383465022301146993518168114230000055000000000000000000000000000000000000000000000000002150000080000000400000000010100000000000000009413340010000000000000000000000000000800000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCC.......................................................................2211906.001906000000000000001000000000000000000000000000000000000000000000000000000000000000006601020030013511512311200032100011310010001728016622908422020711225174000000000000000000000000000000000000182740531011002060700000013000000000000000000000000000000000000000000000001003360000432020000210000202006120000000000000000100111100000000101000000000000000000100000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................................2311898.0018980000250000001002000500000000000000000000000000000000000000110000000000000000010002000010020068701398640281556200013046016100001411060972503312813000000000010000000000000000000000000112105051002632430331331000009000000000000000000000000000000000000000100017100000011702102910907000011600001010080100000000000000011418143400011000003020000000100000000006500100000000
....................................................................................................TTCGTTGTCGACGAAACCTGT........................................................................2111347.001347000016000000100010000000000000000000000000000000000000000000000000000000000000000390000000100540122110000820003110001000422150140641002511624000000000000000000000000000000000000384302400264415629206710000097300000000100000000000000000000000000000000000000001261000668080000011000011000311000020000000000048294791001000000030030000000000001010113100000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................................2211044.0010440000300000000000012000000000000000000000000000000000000000000000000000000000120010031300067111930537110103200100227530101140156020516016123900000000000000000000000000000000000080720420011511921703300000070000000100000000000000000000000000000000000110001012200041300000000000020000601000000000000000012240200000000100000000000000000000700000000000
..................................................CGGGTTTCGTTAGCAGCGGGC..........................................................................................................................211823.008230000000000000003000000000003100000000000000000000000000000000000000000000000000000000001000000000000000000000000000011000010000000000000000010800000000000000000000006202450153115000000002020000002000000000000001000000000000000071000024035710012501002044110167010064250001000000000220311417323901310000012023100003515180411703860212210021361200
....................................................................................................TTCGTTGTCGACGAAACCTGA........................................................................211692.00692000025000110200000010000000000000000000000000000000000000000000000000000000000000200000010003031301001054000220300000021521061017102509061000000000000000000000000000000000000021230120011260151440700000006100000000000000000000000000000000000000000000100000113000031803000009000000000000000000001000000016623160000000000200000000000000000000500000000000
.....................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................................211633.006330000400000010000000000000000000000000000000000000000000000000000000000000000000011000100730219085603002216100022710051200087010125012091400000000000000000000000000000000000043250150027270370801200000042000000000000000000000000000000000000000000000000000300001300000001000010000000000000000000000002220001000000100000000000000000000300000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCG.......................................................................221436.00436000010101010400200030000000000000000000000000000000000000000000000000000000000001161012002001300119031125850002610071110184010111040710000000000000000000000000000000000003030016005110801003410000023000000000000000000000000000000000000000000000000000200003302000001000000000003000000000000000025140000000000000000000000000000000100000000000
.....................................................................................................TCGTTGTCGACGAAACCTGC........................................................................201362.0036200002000000000000000000000001000000000000000000000000000000000000000000000000000200000030003002300001042000000100000323220707515070640000000000000000000000000000000000001631070019230221807000000220000000000000000000000000000000000000000000000000009000021101000003000000000000000000000000000042640000000000000000000000000000000500000000000
..................................................CGGGTTTCGTTAGCAGCGGG...........................................................................................................................201287.00287000000000000000000000000010000010110000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000000000140110012000701000000000000010000000000000000000000000000000110000000000010001601000000000019000030210000000000000000342121000160000010000000003300253171112811201010000
....................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................................231276.002760000200000010000001000000000000000000000000000000000000000000000000000000000000080000002000903150100019000001001600000204000105050613000000000000000000000000000000000000191501000250203060000006000000000000000000000000000000000000000000022000000000000300000000000001000001000000000000000010020000000000100000000000000000000000000000000
....................................................................................................TTCGTTGTCGACGAAACC...........................................................................181239.00239000000000000000000000000000031220300000000000000000000000100000000000000000000002000000000060029000000471000500000000030000000039820000000000000000000000000000000000001140210622231815160000036000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTT.........................................................................201229.0022900000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000310000000324128210000000000000000000000000000000000001080500000101010000003000000000000000000000000000000000000000000000000000100000200000000000000000000000000000000000000060000000000000000000000000000000000000000000
.....................................................................................................TCGTTGTCGACGAAACCTGCAA......................................................................221202.002020000200000000000000000000000000000000000000000000000000000000000000000000000000030000004003110142211207300001804040130010000000020100000000000000000000000000000000000001060500530704010000007100000000000000000000000000000000000000000000000000000000301000011000000000100000000000000000001100000000100000000000000000000000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGG........................................................................211195.00195000030000000001000000000000000000000000000000000000000000000000000000000000000001200000000007003000000700000000100000280100123000230000000000000000000000000000000000001260600750201902930000017000000000000000000000000000000000000000000000000000400002700000003000000000000000000000000000012220000000000000000000000000010000000000000000
.......................................................................................................GTTGTCGACGAAACCTGC........................................................................181169.0016900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000321060245010310000000000000000000000000000000000008130500970400010000003100100000000000000000000000000000000000000000000100050000040000000100000000000000000000000000000441100000000000000000000000000000100400000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCAAA.....................................................................241163.0016300001000000000000010000000000000000000000000000000000000000000000000000000000000200000000003011500010039100080102000002000000000040000000000000000000000000000000000000121305001408080120000005000000000000000000000000000000000000000000011000000000003101000002000000000000000000000000000010100100000000100000000000000000000100000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCCA......................................................................231140.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000400000020006011300000020000000000000122001000002322370000000000000000000000000000000000001570400000000000000000000000000000000000000000000000000000000000000000000200000500000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................TCGGGTTTCGTTAGCAGCGGGC..........................................................................................................................221137.00137000000000000000100000000000014011000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010000000000000000000000000000000000000000121016011110000000000000000000000000000000000000000000000001000000000030000020000001000000110000000000000000000001174401100000002010000000100000302025400010000000
....................................................................................................TTCGTTGTCGACGAAACCTGCAG......................................................................231113.0011300003000010000000000000000000000000000000000000000000000000000000000000000000000100000020101009010000240000110302010000300000002001000000000000000000000000000000000000690300200014080000002000000000100000000000000000000000000000000101000000000001101000000000000000200000000000000000000100000000000000000000000000000000300000000000
....................................................................................................TTCGTTGTCGACGAAACCTGTT.......................................................................221106.0010600000000000000000000000000000000000000000000000000000000000000000000000000000000240000000000600000000005000010000000000000000001021000000000000000000000000000000000000030100020300020000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGATC......................................................................231106.0010600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004660000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................TCGTTGTCGACGAAACCTG.........................................................................19198.009800000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000002000000120000000000000010000000031300000000000000000000000000000000000001570100411214040200000013000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000100000000000
.......................................................................................................GTTGTCGACGAAACCTGCA.......................................................................19187.008700000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000500001010100100000000000000000000000000000000000058061071307000000000013000000000000000000000000000000000000000000000000100001000000000000000000000200000130000000000002140100000000000000000000000000000000000000000
..................................................CGGGTTTCGTTAGCAGCG.............................................................................................................................18179.007900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000100000000000000000000000000000000000000000000000000001000000010000000100000000000000000000000000000000000000000000000000000000000000000000007000024010000000000000000221100204000000000000000020000000012200000000000
....................................................................................................TTCGTTGTCGACGAAACCTC.........................................................................20168.00680000100000000000000000000000000000000000000000000000000000000000000000000000000030000000000100100000000000000000000020000000021530000000000000000000000000000000000006803005302010420000014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTA.........................................................................20161.0061000030000000000000000000000000000000000000000000000000000000000000000000000000004000000000030000000005000000000000002010000000011000000000000000000000000000000000000540400040325030000008000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000001010000000000000000000000000000000000000000000
...................................................GGGTTTCGTTAGCAGCGGGCT.........................................................................................................................21158.00580000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002000000000000000000000000000000000000000000302001010000000000010000000000000000000000000000000000000000000000000000000000000000000000101001000000100000000000432125000000002021000100000001403001200000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCTA......................................................................23152.00520000000000000000000000000000000000000000000000000000000000000000000000000000000040000000100100130000019000110001000001000000101010000000000000000000000000000000000000360500000000000000001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCAAT.....................................................................24152.0052000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000030000001300002000000000110000000000100000000000000000000000000000000000010000000000100000000000000000000000000000000000000000000000000001213000000000001100000000000000000000000000000000000000000000000000000000000000000000000100000000000
......................................................................................................CGTTGTCGACGAAACCTGCA.......................................................................20148.0048000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020013204000000000000000000000000000000000000000000000000000000000000000320200330500010000006000000000000000000000000000000000000000000000002000000000000000000000000000011000030000000000000210000000000000000000000000000000000000000000
droSim2
A------------------------------------TCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCT------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
....................................................................................................TTCGTTGTCGACGAAACCTG.........................................................................20119993.001999319743574731410800200100000
....................................................................................................TTCGTTGTCGACGAAACCTGC........................................................................2119626.0096269295346554112001814012308002
....................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................................2217704.0077047016503825022010526505906001
....................................................................................................TTCGTTGTCGACGAAACCT..........................................................................1913350.00335029028481441100000000102
..................................................CGGGTTTCGTTAGCAGCGGGCT.........................................................................................................................2211660.001660113054080060000011001000
....................................................................................................TTCGTTGTCGACGAAACC...........................................................................1811162.0011629602130917800000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCAA......................................................................231893.0089384124520000020100000
....................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................................221429.004294192700000010000000
..................................................CGGGTTTCGTTAGCAGCGGGC..........................................................................................................................211328.0032827943500800000200000
....................................................................................................TTCGTTGTCGACGAAACCTGCG.......................................................................221286.0028625732600000000000000
..................................................CGGGTTTCGTTAGCAGCGGGCC.........................................................................................................................221226.0022617704900000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................................231172.001721670410000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGG........................................................................211154.001541500310000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCC.......................................................................221131.001311212700000000100000
....................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................................231100.00100940010400000100000
....................................................................................................TTCGTTGTCGACGAAACCTGT........................................................................211100.00100972010000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGA........................................................................21174.0074740000000000000000
.................................................TCGGGTTTCGTTAGCAGCGGGC..........................................................................................................................22173.0073710100000000100000
..................................................CGGGTTTCGTTAGCAGCGGGCG.........................................................................................................................22155.00553402100000000000000
........................................................................................................TTGTCGACGAAACCTGCA.......................................................................18136.0036321300000000000000
....................................................................................................TTCGTTGTCGACGAAACCG..........................................................................19132.0032320000000000000000
....................................................................................................TTCGTTGTCGACGAAACCC..........................................................................19232.0064640000000000000000
.....................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................................21129.0029210240200000000000
.....................................................................................................TCGTTGTCGACGAAACCTGC........................................................................20126.0026210040100000000000
.....................................................................................................TCGTTGTCGACGAAACCTG.........................................................................19123.0023221000000000000000
........................................................................................................TTGTCGACGAAACCTGCAA......................................................................19121.0021210000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCAG......................................................................23121.0021200100000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCAAA.....................................................................24119.0019160100000110000000
.......................................................................................................GTTGTCGACGAAACCTGCA.......................................................................19119.0019190000000000000000
.....................................................................................................TCGTTGTCGACGAAACCTGCAA......................................................................22117.0017160100000000000000
..................................................CGGGTTTCGTTAGCAGCG.............................................................................................................................18116.0016000021400000000000
......................................................................................................CGTTGTCGACGAAACCTG.........................................................................18113.0013130000000000000000
.......................................................................................................GTTGTCGACGAAACCTGC........................................................................18111.0011110000000000000000
..................................................CGGGTTTCGTTAGCAGCGG............................................................................................................................19110.0010000001000000000000
.....................................................................................................TCGTTGTCGACGAAACCT..........................................................................1819.00950000400000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCATT.....................................................................2419.00990000000000000000
..................................................CGGGTTTCGTTAGCAGCGGGCTT........................................................................................................................2318.00880000000000000000
......................................................................................................CGTTGTCGACGAAACCTGC........................................................................1917.00750000100000100000
......................................................................................................CGTTGTCGACGAAACCTGCA.......................................................................2017.00770000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTT.........................................................................2017.00760010000000000000
....................................................................................................TTCGTTGTCGACGAAACCTC.........................................................................2017.00770000000000000000
..................................................CGGGTTTCGTTAGCAGCGGGCTA........................................................................................................................2315.00511200000000100000
....................................................................................................TTCGTTGTCGACGAAACT...........................................................................1815.00550000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCACT.....................................................................2415.00550000000000000000
......................................................................................................CGTTGTCGACGAAACCTGCAA......................................................................2115.00550000000000000000
..................................................CGGGTTTCGTTAGCAGCGGG...........................................................................................................................2015.00520000300000000000
.....................................................................................................TCGTTGTCGACGAAACCTGCAC......................................................................2214.00440000000000000000
.......................................................................................................GTTGTCGACGAAACCTGCAA......................................................................2014.00430100000000000000
.................................................TCGGGTTTCGTTAGCAGC..............................................................................................................................1813.00310000200000000000
..................................................CGGGTTTCGTTAGCAGCGGGAC.........................................................................................................................2213.00330000000000000000
.................................................TCGGGTTTCGTTAGCAGCG.............................................................................................................................1913.00300000300000000000
....................................................................................................TTCGTTGTCGACGAAACCTA.........................................................................2013.00330000000000000000
..................................................CGGGTTTCGTTAGCAGCGGGG..........................................................................................................................2113.00330000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCAAAA....................................................................2512.00220000000000000000
...................................................GGGTTTCGTTAGCAGCGGGCT.........................................................................................................................2112.00200200000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCACA.....................................................................2412.00220000000000000000
.................................................TCGGGTTTCGTTAGCAGCGGGCC.........................................................................................................................2312.00220000000000000000
.................................................TCGGGTTTCGTTAGCAGCGGGCT.........................................................................................................................2312.00220000000000000000
..................................................CGGGTTTCGTTAGCAGCGGGGG.........................................................................................................................2212.00210100000000000000
.....................................................................................................TCGTTGTCGACGAAACCTGCT.......................................................................2112.00220000000000000000
.....................................................................................................TCGTTGTCGACGAAACCTGCC.......................................................................2112.00220000000000000000
..................................................CGGGTTTCGTTAGCAGCGGGGC.........................................................................................................................2212.00220000000000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCATC.....................................................................2411.00110000000000000000
droSec2
A------------------------------------TCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCT------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
....................................................................................................TTCGTTGTCGACGAAACCTGC........................................................................21113672.00136722452218713218
....................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................................2212713.00271340392762025
..................................................CGGGTTTCGTTAGCAGCGGGCT.........................................................................................................................2211028.001028312501512
....................................................................................................TTCGTTGTCGACGAAACCTG.........................................................................201551.0055115014396
....................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................................231372.003721364349
....................................................................................................TTCGTTGTCGACGAAACCTGCAA......................................................................231201.0020115310173
....................................................................................................TTCGTTGTCGACGAAACCTGT........................................................................211162.00162610155
....................................................................................................TTCGTTGTCGACGAAACCT..........................................................................19194.0094120082
....................................................................................................TTCGTTGTCGACGAAACCTGA........................................................................21180.008010079
..................................................CGGGTTTCGTTAGCAGCGGGC..........................................................................................................................21171.0071031751
.....................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................................21154.0054410112
.....................................................................................................TCGTTGTCGACGAAACCTGC........................................................................20150.0050240125
.......................................................................................................GTTGTCGACGAAACCTGC........................................................................18126.002600224
....................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................................22121.002110218
.....................................................................................................TCGTTGTCGACGAAACCTG.........................................................................19118.001816002
.................................................TCGGGTTTCGTTAGCAGCGGGC..........................................................................................................................22116.001601015
...................................................GGGTTTCGTTAGCAGCGGGCT.........................................................................................................................21115.001500510
..................................................CGGGTTTCGTTAGCAGCGGG...........................................................................................................................20111.00110047
....................................................................................................TTCGTTGTCGACGAAACCTGCAAA.....................................................................2419.0090018
....................................................................................................TTCGTTGTCGACGAAACCTGCAG......................................................................2319.0090018
....................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................................2319.0090009
....................................................................................................TTCGTTGTCGACGAAACCTGG........................................................................2118.0084004
....................................................................................................TTCGTTGTCGACGAAACCTC.........................................................................2018.0080026
....................................................................................................TTCGTTGTCGACGAAACCTGCG.......................................................................2218.0081016
......................................................................................................CGTTGTCGACGAAACCTGCA.......................................................................2017.0076001
....................................................................................................TTCGTTGTCGACGAAACCTGCC.......................................................................2216.0060006
.....................................................................................................TCGTTGTCGACGAAACCTGCAT......................................................................2215.0051004
.....................................................................................................TCGTTGTCGACGAAACCTGCAA......................................................................2215.0052003
....................................................................................................TTCGTTGTCGACGAAACCTGTT.......................................................................2214.0040004
..................................................CGGGTTTCGTTAGCAGCGGGCC.........................................................................................................................2213.0030012
....................................................................................................TTCGTTGTCGACGAAACCTGCATT.....................................................................2413.0031002
....................................................................................................TTCGTTGTCGACGAAACCTT.........................................................................2013.0031002
....................................................................................................TTCGTTGTCGACGAAACCTGCTA......................................................................2312.0020002
......................................................................................................CGTTGTCGACGAAACCTGC........................................................................1912.0021001
......................................................................................................CGTTGTCGACGAAACCTG.........................................................................1812.0022000
.................................................TCGGGTTTCGTTAGCAGCGGGCT.........................................................................................................................2312.0020002
.................................................TCGGGTTTCGTTAGCAGCGGG...........................................................................................................................2112.0020002
....................................................................................................TTCGTTGTCGACGAAACCTGACC......................................................................2321.5030003
....................................................................................................TTCGTTGTCGACGAAACCTGTC.......................................................................2211.0010001
........................................................................................................TTGTCGACGAAACCTGCA.......................................................................1811.0010001
..................................................CGGGTTTCGTTAGCAGCGG............................................................................................................................1911.0010001
....................................................................................................TTCGTTGTCGACGAAACCTGAC.......................................................................2211.0010001
..................................................CGGGTTTCGTTAGCAGCGGGCTT........................................................................................................................2311.0011000
....................................................................................................TTCGTTGTCGACGAAACCTGCATA.....................................................................2411.0010001
.......................................................................................................GTTGTCGACGAAACCTGCAA......................................................................2011.0010001
.....................................................................................................TCGTTGTCGACGAAACCT..........................................................................1811.0010001
..................................................CGGGTTTCGTTAGCAGCG.............................................................................................................................1811.0010001
..................................................CGGGTTTCGTTAGCAGCGGT...........................................................................................................................2011.0010001
....................................................................................................TTCGTTGTCGACGAAACCTGCATTT....................................................................2511.0010001
.......................................................................................................GTTGTCGACGAAACCTGCA.......................................................................1911.0010001
....................................................................................................TTCGTTGTCGACGAAACCGC.........................................................................2011.0010001
....................................................................................................TTCGTTGTCGACGAAACCTCA........................................................................2111.0010001
..................................................CGGGTTTCGTTAGCAGCGGGCTC........................................................................................................................2311.0010001
droYak3
A------------------------------------TCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAAAAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCT------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
....................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................................2215137.005137167248218996436964640010
....................................................................................................TTCGTTGTCGACGAAACCTGC........................................................................2114500.0045001798316543696691093120000
....................................................................................................TTCGTTGTCGACGAAACCTG.........................................................................2012374.00237420141191618913500000
..................................................CGGGTTTCGTTAGCAGCGGGCT.........................................................................................................................221823.008234961167117132630000
....................................................................................................TTCGTTGTCGACGAAACCTGCAA......................................................................231451.00451243161084285200000
....................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................................221225.00225189713051100000
....................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................................231176.0017614922102200000
....................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................................231153.00153436133315700000
....................................................................................................TTCGTTGTCGACGAAACCT..........................................................................191149.001491041410141600000
..................................................CGGGTTTCGTTAGCAGCGGGCC.........................................................................................................................221146.001469205400000000
....................................................................................................TTCGTTGTCGACGAAACC...........................................................................181121.001218803300000000
....................................................................................................TTCGTTGTCGACGAAACCTGCC.......................................................................221108.0010855016082900000
....................................................................................................TTCGTTGTCGACGAAACCTGT........................................................................21194.00945100276100000
..................................................CGGGTTTCGTTAGCAGCGGGC..........................................................................................................................21191.00915401892520010
....................................................................................................TTCGTTGTCGACGAAACCTGCG.......................................................................22171.0071621102500000
.....................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................................21158.0058446110600000
.....................................................................................................TCGTTGTCGACGAAACCTGC........................................................................20144.0044140000300000
....................................................................................................TTCGTTGTCGACGAAACCTGG........................................................................21131.0031290100100000
....................................................................................................TTCGTTGTCGACGAAACCTGCAG......................................................................23121.0021112103400000
..................................................CGGGTTTCGTTAGCAGCGGGCG.........................................................................................................................22117.0017170000000000
....................................................................................................TTCGTTGTCGACGAAACCTGA........................................................................21114.001480112200000
..................................................CGGGTTTCGTTAGCAGCGGGCTT........................................................................................................................2319.00980100000000
....................................................................................................TTCGTTGTCGACGAAACCC..........................................................................1918.00880000000000
.....................................................................................................TCGTTGTCGACGAAACCTG.........................................................................1918.00825001000000
.....................................................................................................TCGTTGTCGACGAAACCTGCAA......................................................................2218.00880000000000
......................................................................................................CGTTGTCGACGAAACCTGC........................................................................1917.00734000000000
.................................................TCGGGTTTCGTTAGCAGCGGGC..........................................................................................................................2217.00740002100000
....................................................................................................TTCGTTGTCGACGAAACCTT.........................................................................2016.00601101300000
....................................................................................................TTCGTTGTCGACGAAAC............................................................................1716.00600000600000
.......................................................................................................GTTGTCGACGAAACCTGC........................................................................1816.00620000400000
......................................................................................................CGTTGTCGACGAAACCTGCA.......................................................................2015.00503100100000
.....................................................................................................TCGTTGTCGACGAAACCT..........................................................................1815.00505000000000
........................................................................................................TTGTCGACGAAACCTGCA.......................................................................1815.00541000000000
..................................................CGGGTTTCGTTAGCAGCGGG...........................................................................................................................2014.00400010200010
....................................................................................................TTCGTTGTCGACGAAACCTGCACA.....................................................................2414.00440000000000
.....................................................................................................TCGTTGTCGACGAAACCTGCAT......................................................................2214.00402000200000
....................................................................................................TTCGTTGTCGACGAAACCTGCAAC.....................................................................2414.00410100200000
....................................................................................................TTCGTTGTCGACGAAACCTGCCA......................................................................2314.00410101100000
....................................................................................................TTCGTTGTCGACGAAACCTGCAAA.....................................................................2413.00310100100000
....................................................................................................TTCGTTGTCGACGAAACCG..........................................................................1913.00330000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCAAT.....................................................................2413.00300200100000
....................................................................................................TTCGTTGTCGACGAAACCTGAC.......................................................................2212.00220000000000
..................................................CGGGTTTCGTTAGCAGCGGGT..........................................................................................................................2112.00210010000000
.......................................................................................................GTTGTCGACGAAACCTGCAA......................................................................2012.00210001000000
....................................................................................................TTCGTTGTCGACGAAACCTGTT.......................................................................2212.00220000000000
....................................................................................................TTCGTTGTCGACGAAACCTGCATA.....................................................................2412.00220000000000
...................................................GGGTTTCGTTAGCAGCGGGCT.........................................................................................................................2112.00210010000000
....................................................................................................TTCGTTGTCGACGAAACCTA.........................................................................2012.00210001000000
..................................................CGGGTTTCGTTAGCAGCGGGAC.........................................................................................................................2212.00210100000000
....................................................................................................TTCGTTGTCGACGAAACCTGCATT.....................................................................2412.00210000100000
....................................................................................................TTCGTTGTCGACGAAACCTGCTC......................................................................2311.00110000000000
droEre2
A------------------------------------TCCTCACTGAAGTCGGGTTTCGTTAGCAGCGGGCTGTTTTAATAA--------ATTCAACAAGTTCGTTGTCGACGAAACCTGCATGCTGTGT-GGAAAATCAACGCTC-T---------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
....................................................................................................TTCGTTGTCGACGAAACCTGC........................................................................21121489.00214894587911479954196520
....................................................................................................TTCGTTGTCGACGAAACCTGCA.......................................................................2214377.004377978278584633124430
..................................................CGGGTTTCGTTAGCAGCGGGCT.........................................................................................................................2211148.00114821745621310090
....................................................................................................TTCGTTGTCGACGAAACCTG.........................................................................201730.00730235075024180
....................................................................................................TTCGTTGTCGACGAAACCTGCAA......................................................................231337.00337361051202380
....................................................................................................TTCGTTGTCGACGAAACCTGCAT......................................................................231235.0023522335011740
.....................................................................................................TCGTTGTCGACGAAACCTGCA.......................................................................211113.00113102030080
....................................................................................................TTCGTTGTCGACGAAACCTGT........................................................................211106.00106301901830
....................................................................................................TTCGTTGTCGACGAAACCTGA........................................................................21196.009610600890
.....................................................................................................TCGTTGTCGACGAAACCTGC........................................................................20195.0095460300460
..................................................CGGGTTTCGTTAGCAGCGGGC..........................................................................................................................21184.008413620720
....................................................................................................TTCGTTGTCGACGAAACCT..........................................................................19164.0064160300450
.......................................................................................................GTTGTCGACGAAACCTGC........................................................................18140.004010000390
....................................................................................................TTCGTTGTCGACGAAACCTGCC.......................................................................22133.0033021800130
....................................................................................................TTCGTTGTCGACGAAACCTGCT.......................................................................22128.002853320150
.....................................................................................................TCGTTGTCGACGAAACCTG.........................................................................19126.002624000020
......................................................................................................CGTTGTCGACGAAACCTGC........................................................................19119.001930100150
....................................................................................................TTCGTTGTCGACGAAACCTGCAC......................................................................23118.00182540070
.................................................TCGGGTTTCGTTAGCAGCGGGC..........................................................................................................................22117.001700100160
....................................................................................................TTCGTTGTCGACGAAACCTGCAG......................................................................23116.001630300100
...................................................GGGTTTCGTTAGCAGCGGGCT.........................................................................................................................21114.001400101120
....................................................................................................TTCGTTGTCGACGAAACCTGCG.......................................................................22112.001200100110
.......................................................................................................GTTGTCGACGAAACCTGCA.......................................................................19112.00121020090
......................................................................................................CGTTGTCGACGAAACCTGCA.......................................................................20110.00104010050
....................................................................................................TTCGTTGTCGACGAAACCTT.........................................................................2019.0090010080
....................................................................................................TTCGTTGTCGACGAAACCTGCAAA.....................................................................2418.0080010070
.....................................................................................................TCGTTGTCGACGAAACCTGCAA......................................................................2218.0081110050
....................................................................................................TTCGTTGTCGACGAAACC...........................................................................1818.0081500020
..................................................CGGGTTTCGTTAGCAGCGGGCC.........................................................................................................................2218.0080800000
....................................................................................................TTCGTTGTCGACGAAACCTC.........................................................................2016.0061000050
..................................................CGGGTTTCGTTAGCAGCGGG...........................................................................................................................2015.0050010040
........................................................................................................TTGTCGACGAAACCTGCA.......................................................................1815.0050000050
....................................................................................................TTCGTTGTCGACGAAACCTGCATT.....................................................................2414.0041010020
..................................................CGGGTTTCGTTAGCAGCGGGT..........................................................................................................................2113.0030010020
....................................................................................................TTCGTTGTCGACGAAACCTGCCA......................................................................2313.0030030000
....................................................................................................TTCGTTGTCGACGAAACCTGCAAT.....................................................................2413.0030000030
.....................................................................................................TCGTTGTCGACGAAACCTGCT.......................................................................2113.0031000020
....................................................................................................TTCGTTGTCGACGAAACCTCA........................................................................2112.0020000020
.....................................................................................................TCGTTGTCGACGAAACCT..........................................................................1812.0022000000
......................................................................................................CGTTGTCGACGAAACCTG.........................................................................1812.0021000010
..................................................CGGGTTTCGTTAGCAGCGGGA..........................................................................................................................2112.0020000020
.....................................................................................................TCGTTGTCGACGAAACCTGA........................................................................2012.0021000010
.....................................................................................................TCGTTGTCGACGAAACCTGCAG......................................................................2212.0021000010
....................................................................................................TTCGTTGTCGACGAAACCTGCAGT.....................................................................2412.0020010010
.......................................................................................................GTTGTCGACGAAACCTGCAA......................................................................2012.0020010010
......................................................................................................CGTTGTCGACGAAACCTGCAA......................................................................2112.0021000010
.................................................TCGGGTTTCGTTAGCAGC..............................................................................................................................1812.0020000020
....................................................................................................TTCGTTGTCGACGAAACTGC.........................................................................2061.3380000080
......................................................................................................CGTTGTCGACGAAACCTGCC.......................................................................2011.0010000010
.....................................................................................................TCGTTGTCGACGAAACCTGCATT.....................................................................2311.0011000000

Generated: 10/20/2015 at 06:58 PM