ID:

dwi_227

 Coordinate:

scf2_1100000001124:5997-6233 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.6 -9.6 -9.5

Flybase annnotation

exon [dwil_GLEANR_7093:1]; CDS [Dwil\GK23492-cds]; exon [dwil_GLEANR_7093:2]; CDS [Dwil\GK23492-cds]; intron [Dwil\GK23492-in]

Repeatable elements

NameClassFamilyStrand
Gypsy-24_DWil-I-intLTRGypsy+
(CTA)nSimple_repeatSimple_repeat+
mature
  1. scf2_1100000001124:1191-1216 +
  2. dwi_227  scf2_1100000001124:6119-6144 +
  3. scf2_1100000013120:359-384 +
  4. scf2_1100000008239:648-673 +
  5. scf2_1100000008463:548-573 +
  6. scf2_1100000011010:973-998 +
  7. scf2_1100000002232:691-716 -
  8. scf2_1100000002327:958-983 +
  9. scf2_1100000009445:686-711 -
  10. scf2_1100000014694:1052-1077 +
  11. scf2_1100000004595:88018-88043 +
  12. scf2_1100000004669:3164-3189 +
  13. scf2_1100000004782:4442-4467 -
  14. scf2_1100000014858:1485-1510 +
  15. scf2_1100000004887:590925-590950 -
  16. scf2_1100000004887:595484-595509 -
  17. scf2_1100000004954:3278048-3278073 -
  18. scf2_1100000004955:130533-130558 +
  19. scf2_1100000000638:1524-1549 -
  20. scf2_1100000000253:364-389 +
star
  1. scf2_1100000001124:1242-1266 +
  2. dwi_227  scf2_1100000001124:6192-6216 +
  3. scf2_1100000010933:418-442 +
  4. scf2_1100000008463:577-601 +
  5. scf2_1100000011010:1002-1026 +
  6. scf2_1100000003755:2076-2100 +
  7. scf2_1100000003755:2194-2218 +
  8. scf2_1100000002327:987-1011 +
  9. scf2_1100000009445:658-682 -
  10. scf2_1100000004595:88047-88071 +
  11. scf2_1100000014858:1514-1538 +
  12. scf2_1100000004856:1222-1246 -
  13. scf2_1100000004891:41204-41228 +
  14. scf2_1100000004932:53800-53824 -
  15. scf2_1100000004961:2404915-2404939 -
  16. scf2_1100000004962:441505-441529 -
  17. scf2_1100000004967:3623851-3623875 +
  18. scf2_1100000004968:2759960-2759984 -
  19. scf2_1100000004968:2764520-2764544 -
  20. scf2_1100000000638:1496-1520 -
  21. scf2_1100000004887:590897-590921 -
  22. scf2_1100000004887:595456-595480 -
  23. scf2_1100000004962:424065-424089 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TACCCGACTGTCCTGAATTGTCTGAACCGGCACCATTGTCCCCAGCTCCAGTGACTCCTCGCAGATCGAGTCGGAAAAGACAACCCCCGGAATTCTTTAACCCATCTGGGTGTTAAGGGGTGTTATGTATGTGACCCATCTCTTCGCTGCACTTCTCAGTCGTTCTACTAATTGCTTCGGAACAACATCGGACTCCCCTGCTACAACTACGAGGGACTATTACTACAACTACGAGGGACTATTACTACAACTACGAGGGACTTCTACTACTGCAACTACTACTACAGCTACAAGGGATTACTACTACAACTACGAGGGATTGCTACTACCGCGACTA
****************************************************************************************************************************************************************************..(((((.........(((......))).........)))))..................((((..((................))..))))......******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body		 V119
head
..........................................................................................................................................................................................................................................................................................................TACTACTACAACTACGAGGGATTGC.............. 25 0 15 1.13 17 1 16 0 0
............................................................................................................................................................................TGCTTCGGAACAACATCGGACTCCCC........................................................................................................................................... 26 0 20 0.85 17 17 0 0 0
.............................................................................................................................................................................................................................................................................................................TACTACAACTACGAGGGATTGCTAC........... 25 0 15 0.47 7 1 6 0 0
........................................................................................................................................................................................................................................................................................................ATTACTACTACAACTACGAGGGATTGC.............. 27 0 15 0.33 5 2 3 0 0
................................................................................................................................................................................................................................................................................................................TACAACTACGAGGGATTGCTACTACCG...... 27 0 15 0.33 5 0 5 0 0
..........................................................................................................................................................................................................................................................................................TACAGCTACAAGGGATTACTACTACAAC........................... 28 0 13 0.31 4 0 4 0 0
.....................................................................................................................................................................................................................................................TACAACTACGAGGGACTTCTACTAC................................................................... 25 0 20 0.20 4 2 2 0 0
..........................................................................................................................................................................................................................................................................................................TACTACTACAACTACGAGGGATTGCT............. 26 0 15 0.20 3 0 3 0 0
..........................................................................................................................................................................................................................................................................................................TACTACTACAACTACGAGGGATTG............... 24 0 15 0.20 3 2 1 0 0
...........................................................................................................................................................................................................................................................TACGAGGGACTTCTACTACTGCAAC............................................................. 25 0 11 0.18 2 1 1 0 0
......................................................................................................................................................................................................................................................ACAACTACGAGGGACTTCTACTACTGCAA.............................................................. 29 0 12 0.17 2 2 0 0 0
............................................................................................................................................................................TGCTTCGGAACAACATCGGACTCCCCTG......................................................................................................................................... 28 0 20 0.15 3 3 0 0 0
...............................................................................................................................................................................TTCGGAACAACATCGGACTCCCC........................................................................................................................................... 23 0 20 0.15 3 3 0 0 0
..............................................................................................................................................................................CTTCGGAACAACATCGGACTCCC............................................................................................................................................ 23 0 20 0.15 3 3 0 0 0
......................................................................................................................................................................................................................................................ACAACTACGAGGGACTTCTACTACTG................................................................. 26 0 20 0.15 3 3 0 0 0
.....................................................................................................................................................................................................................................................................................................................CTACGAGGGATTGCTACTACCG...... 22 0 15 0.13 2 1 1 0 0
.....................................................................................................................................................................................................................................................................................................................CTACGAGGGATTGCTACTACCGCG.... 24 0 15 0.13 2 2 0 0 0
.........................................................................................................................................................TCTCAGTCGTTCTACTAATTGCTTCGG............................................................................................................................................................. 27 0 20 0.10 2 0 2 0 0
...........................................................CGCAGATCGAGTCGGAAAAGA................................................................................................................................................................................................................................................................. 21 0 20 0.10 2 2 0 0 0
..............................................................................................................................................................................CTTCGGAACAACATCGGACTCCCC........................................................................................................................................... 24 0 20 0.10 2 2 0 0 0
................ATTGTCTGAACCGGCACCATTGT.......................................................................................................................................................................................................................................................................................................... 23 0 20 0.10 2 2 0 0 0
........................................................................................................................................................................TAATTGCTTCGGAACAACATCGGAC................................................................................................................................................ 25 0 20 0.10 2 0 2 0 0
..............................................................................................................................................................................CTTCGGAACAACATCGGACTCC............................................................................................................................................. 22 0 20 0.10 2 2 0 0 0
.......................................................................................................................................................................................................................................................CAACTACGAGGGACTTCTACTA.................................................................... 22 0 20 0.10 2 2 0 0 0
..............................................TCCAGTGACTCCTCGCAGATCGAG........................................................................................................................................................................................................................................................................... 24 0 20 0.10 2 2 0 0 0
........................................................................................................................................................TTCTCAGTCGTTCTACTAATTGCT................................................................................................................................................................. 24 0 20 0.10 2 2 0 0 0
................................................................................................................................................................................TCGGAACAACATCGGACTCCCCTGC........................................................................................................................................ 25 0 20 0.10 2 2 0 0 0
..............................................TCCAGTGACTCCTCGCAGATCGAGT.......................................................................................................................................................................................................................................................................... 25 0 20 0.10 2 0 2 0 0
..........................................................................................................................................................................................................................................................CTACGAGGGACTTCTACTACTGCAAC............................................................. 26 0 11 0.09 1 0 1 0 0
..............................................................................................................................................................................................................................................................GAGGGACTTCTACTACTGCAACTA........................................................... 24 0 11 0.09 1 1 0 0 0
.............................................................................................................................................................................................................................................................CGAGGGACTTCTACTACTGCAACT............................................................ 24 0 11 0.09 1 1 0 0 0
...........................................................................................................................................................................................................................................................TACGAGGGACTTCTACTACTGCAACTAC.......................................................... 28 0 11 0.09 1 1 0 0 0
...................................................................................................................................................................................................................................................................ACTTCTACTACTGCAACTACTACT...................................................... 24 0 12 0.08 1 1 0 0 0
............................................................................................................................................................................................................................................................ACGAGGGACTTCTACTACTGCA............................................................... 22 0 12 0.08 1 1 0 0 0
................................................................................................................................................................................................................................................................................................TACAAGGGATTACTACTACAACTACGAG..................... 28 0 13 0.08 1 1 0 0 0
................................................................................................................................................................................................................................................................................................TACAAGGGATTACTACTACAACTACGA...................... 27 0 13 0.08 1 1 0 0 0
.................................................................................................................................................................................................................................................................................................ACAAGGGATTACTACTACAACTACGAG..................... 27 0 13 0.08 1 0 1 0 0
............................................................................................................................................................................................................................................................................................CAGCTACAAGGGATTACTACT................................ 21 0 13 0.08 1 0 1 0 0
....................................................................................................................................................................................................................................................................................TACTACTACAGCTACAAGGGATTACTGC................................. 28 1 13 0.08 1 1 0 0 0
................................................................................................................................................................................................................................................................................................TACAAGGGATTACTACTACAACTACA....................... 26 1 13 0.08 1 0 1 0 0
..........................................................................................................................................................................................................................................................................................TACAGCTACAAGGGATTACTAC................................. 22 0 13 0.08 1 0 1 0 0
..................................................................................................................................................................................................................................................................................................CAAGGGATTACTACTACAACTACGA...................... 25 0 13 0.08 1 1 0 0 0
..................................................................................................................................................................................................................................................................GACTTCTACTACTGCAACT............................................................ 19 0 13 0.08 1 1 0 0 0
..................................................................................................................................................................................................................................................................................................CAAGGGATTACTACTACAACTACGAG..................... 26 0 13 0.08 1 0 1 0 0
................................................................................................................................................................................................................................................................................................................TACAACTACGAGGGATTGCTACTAC........ 25 0 15 0.07 1 1 0 0 0
.................................................................................................................................................................................................................................................................................................................ACAACTACGAGGGATTGCTACTAC........ 24 0 15 0.07 1 1 0 0 0
..........................................................................................................................................................................................................................................................................................................TACTACTACAACTACGAGGGATTGCTA............ 27 0 15 0.07 1 1 0 0 0
................................................................................................................................................................................................................................................................................................................TACAACTACGAGGGATTGCTACTACCGCG.... 29 0 15 0.07 1 0 0 1 0
........................................................................................................................................................................................................................................................................................................ATTACTACTACAACTACGAGGGATTG............... 26 0 15 0.07 1 0 1 0 0
................................................................................................................................................................................................................................................................................................................TACAACTTCGAGGGATTGCTACTACCG...... 27 1 15 0.07 1 0 1 0 0
.................................................................................................................................................................................................................................................................................................................ACAACTACGAGGGATTGCTACTA......... 23 0 15 0.07 1 1 0 0 0
................................................................................................................................................................................................................................................................................................................TACAACTACGAGGGATTGCTACTACC....... 26 0 15 0.07 1 0 1 0 0
......................................................................................................................................................................................................................................................................................................................TACGAGGGATTGCTACTACC....... 20 0 15 0.07 1 0 1 0 0
...........................................................................................................................................................................................................................................................................................................ACTACTACAACTACGAGGGATTGCTA............ 26 0 15 0.07 1 1 0 0 0
......................................................................................................................................................................................................................................................................................................................TACGAGGGATTGCTACTACCGCGAC.. 25 0 15 0.07 1 1 0 0 0
...........................................................................................................................................................................................................................................................................................................ACTACTACAACTACGAGGGATTGCTAC........... 27 0 15 0.07 1 1 0 0 0
................................................................................................................................................................................................................................................................................................................TACAACTACGAGGGATTGCTACTACCGC..... 28 0 15 0.07 1 1 0 0 0
..............................................................................................................................................................................................................................................................................................................ACTACAACTACGAGGGATTGCTA............ 23 0 15 0.07 1 1 0 0 0
......................................................................................................................................................................................................................................................................................................................TACGAGGGATTGCTACTACCGC..... 22 0 15 0.07 1 1 0 0 0
..............................................................................................................................................................................................................................................................................................................ACTACAACTACGAGGGATTGCT............. 22 0 15 0.07 1 1 0 0 0
..........................................................................................................................................................................................................................................................................................................TACTACTACAAGTACGAGGGATTGC.............. 25 1 15 0.07 1 1 0 0 0
.....................................................................................................................................................................................................................................................................................................................CTACGAGGGATTGCTACTACCGCGAC.. 26 0 15 0.07 1 0 1 0 0
.........................................................................................................................................................................................................................................................................................................TTACTACTACAACTACGAGGGATTGC.............. 26 0 15 0.07 1 0 1 0 0
...............................................................................................................................................................................................................................................................................................................CTACAACTACGAGGGATTGCTA............ 22 0 15 0.07 1 1 0 0 0
..........................................................................................................................................................................................................................................................................................................TACTACTACAACTATGAGGGATTGCT............. 26 1 16 0.06 1 0 1 0 0
.....................................................................................................................................................................................................................................................................TTCTACTACTGCAACTACTACTACAGC................................................. 27 0 17 0.06 1 1 0 0 0
........................................................................................................................................................................................................................................................................TACTACTGCAACTACTACTACAGC................................................. 24 0 18 0.06 1 1 0 0 0
..............................................................................................................................................................................................................................................................................................GCTACAATGGATTACAAC................................. 18 2 18 0.06 1 1 0 0 0
.....................................................................................................................................................................................................................................................................................................GGGATTACTACTACAACTACGAGGGATT................ 28 0 18 0.06 1 1 0 0 0
........TGTCCTGAATTGTCTGAACCGGCACCAT............................................................................................................................................................................................................................................................................................................. 28 0 18 0.06 1 1 0 0 0
..................................................................CGAGTCGGAAAAGACAACCCCCGGAAT.................................................................................................................................................................................................................................................... 27 0 19 0.05 1 1 0 0 0
..........TCCTGAATTGTCTGAACCGGCACCA.............................................................................................................................................................................................................................................................................................................. 25 0 19 0.05 1 1 0 0 0
..................TGTCTGAACCGGCACCATTGTCCCCAG.................................................................................................................................................................................................................................................................................................... 27 0 19 0.05 1 1 0 0 0
......................TGAACCGGCACCATTGTCCCCAGC................................................................................................................................................................................................................................................................................................... 24 0 19 0.05 1 1 0 0 0
..................TGTCTGAACCGGCACCATTGTCCCCAGC................................................................................................................................................................................................................................................................................................... 28 0 19 0.05 1 1 0 0 0
.......CTGTCCTGAATTGTCTGAACCGG................................................................................................................................................................................................................................................................................................................... 23 0 19 0.05 1 1 0 0 0
..................................................................CGAGTCGGAAAAGACAACCCCCGGAA..................................................................................................................................................................................................................................................... 26 0 19 0.05 1 1 0 0 0
...........CCTGAATTGTCTGAACCGGCACCA.............................................................................................................................................................................................................................................................................................................. 24 0 19 0.05 1 1 0 0 0
.........................................................................................................................................................................AATTGCTTCGGAACAACATCGGAC................................................................................................................................................ 24 0 20 0.05 1 1 0 0 0
...........................................................................................................................................................................TTGCTTCGGAACAACATCGGACTCCCC........................................................................................................................................... 27 0 20 0.05 1 1 0 0 0
...................................................................................................................AGGGGTGTTATGTATGTGA........................................................................................................................................................................................................... 19 0 20 0.05 1 0 0 1 0
.............................................................................................................................................................................................................................................................................................................TACTACAGCTACGAGGGATTGCTAC........... 25 1 20 0.05 1 0 1 0 0
................................CCATTGTCCCCAGCTCCAGTGACT......................................................................................................................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0
....................................................................................................................................................................................................................................................CTACAACTACGAGGGACTTCTA....................................................................... 22 0 20 0.05 1 1 0 0 0
......................................................................................................................................................................................................................................................ACAACTACGAGGGACTTCTACTA.................................................................... 23 0 20 0.05 1 1 0 0 0
..............................................................................................................TGTTAAGGGGTGTTATGTATGTGAC.......................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
......................................................................................................................................................................................................................................................ACAACTACGAGGGACTTCTACT..................................................................... 22 0 20 0.05 1 0 1 0 0
...........................................................................................................................................................................................TCGGACTCCCCTGCTACAACTAC............................................................................................................................... 23 0 20 0.05 1 1 0 0 0
.......................................................................................................................................................CTTCTCAGTCGTTCTACTAATTGCT................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0
........................................................................................................................................................................................ACATCGGACTCCCCTGCTAC..................................................................................................................................... 20 0 20 0.05 1 1 0 0 0
.....................................................................................................................................................................TACTAATTGCTTCGGAACAACATCGGAC................................................................................................................................................ 28 0 20 0.05 1 1 0 0 0
......................................................................................................................................................................................CAACATCGGACTCCCCTGCTA...................................................................................................................................... 21 0 20 0.05 1 1 0 0 0
....................................................................................................................................................GCACTTCTCAGTCGTTCTACTAATTG................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0
...........................................................CGCAGATCGAGTCGGAAAAGACAACC............................................................................................................................................................................................................................................................ 26 0 20 0.05 1 1 0 0 0
...................................................................................................................................................................TCTACTAATTGCTTCGGAACAACATCGGA................................................................................................................................................. 29 0 20 0.05 1 1 0 0 0
...........................................................CGCAGATCGAGTCGGAAAAGACAAC............................................................................................................................................................................................................................................................. 25 0 20 0.05 1 0 1 0 0
....................................................................................................................................................GCACTTCTCAGTCGTTCTACTAAT..................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0
....................................................................................................................................................GCACTTCTCAGTCGTTCTACTAATTGC.................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0
...................................................................................................................................................TGCACTTCTCACTCGTTCTACTAATTGC.................................................................................................................................................................. 28 1 20 0.05 1 1 0 0 0
.............................................................................................................................................................AGTCGTTCTACTAATTGCTTCGGA............................................................................................................................................................ 24 0 20 0.05 1 0 1 0 0
................................................................................................................................................................................................................................................ATGACGAAAACTACGAGGG.............................................................................. 19 3 20 0.05 1 1 0 0 0
.................................................................................................................................................................GTTCTACTAATTGCTTCGGAA........................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0
.....................................................................................................................................................................TACTAATTGCTTCGGAACAACATCGG.................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0
............................................................................................................................................................................TGCTTCGGAGCGACATCGGACTCCCC........................................................................................................................................... 26 2 20 0.05 1 1 0 0 0
......................................................................................................................................................................................CAACATCGGACTCCCCTGCTACAAC.................................................................................................................................. 25 0 20 0.05 1 0 1 0 0
..............................................................................................................................................................GTCGTTCTACTAATTGCTTCGGAAC.......................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
.......................................................................................................................................................................................AACATCGGACTCCCCTGCTACAACT................................................................................................................................. 25 0 20 0.05 1 1 0 0 0
.............AGAACTGTTTGAACCGGCA................................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 1 0 0 0
.........................................................................................GAATTCTTTAACCCATCTGGGTG................................................................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0
...........................................................................................................................................................TCAGTCGTTCTACTAATTGCTTCGGAA........................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0
....................................................................................................................................................................................................CCTGCTACAACTACGAGGGA......................................................................................................................... 20 0 20 0.05 1 0 0 1 0
....................................TGTCCCCAGCTCCAGTGACTCCTCGCAGA................................................................................................................................................................................................................................................................................ 29 0 20 0.05 1 1 0 0 0
................................................................................................................TTAAGGGGTGTTATGTATGTG............................................................................................................................................................................................................ 21 0 20 0.05 1 0 1 0 0
..............................................TCCAGTGACTCCTCGCAGATCGAGTCG........................................................................................................................................................................................................................................................................ 27 0 20 0.05 1 1 0 0 0
.................................................................................................................TAAGGGGTGTTATGTATGTGACC......................................................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0
................ATTGTCTGAACCGGCACCATTGTCC........................................................................................................................................................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0
.....................................................................................................................................................................TACTAATTGCTTCGGAACAACATCG................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
.........................................................................................................................................................................AATTGCTTCGGAACAACATCGGA................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0
......................................................................................................................................................................................CAACATCGGACTCCCCTGCTACAA................................................................................................................................... 24 0 20 0.05 1 0 1 0 0
..........................................................................................................................................................................................................................ATGACGAAAACTACGAGGG.................................................................................................... 19 3 20 0.05 1 1 0 0 0
....................................................GACTCCTCGCAGATCGAGTC......................................................................................................................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0
..........................................................................................................................................................CTCAGTCGTTCTACTAATTGCT................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0
..............GAATTGTCTGAACCGGCACCATTG........................................................................................................................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0
.............................................................................................................................................................................GCTTCGGAACAACATCGGACTCCCC........................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
............................GGCACCAGTCTCCTCAGCT.................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0
..........................................................................................................................................................CTCAGTCGTTCTACTAATTGCTTCGGAA........................................................................................................................................................... 28 0 20 0.05 1 1 0 0 0
......................................................................................................CATCTGGGTGTTAAGGGGT........................................................................................................................................................................................................................ 19 0 20 0.05 1 0 0 1 0
................................................................................................................................................................................TCGGAACAACATCGGACTCCC............................................................................................................................................ 21 0 20 0.05 1 1 0 0 0
......................................................................................................................................................................ACTAATTGCTTCGGAACAACATCGG.................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0
.............TGAATTGTCTGAACCGGCACCATTGT.......................................................................................................................................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0
.........................................................................................................................................................................AATTGCTTCGGAACAACATCGGACTCCC............................................................................................................................................ 28 0 20 0.05 1 1 0 0 0
..........................................................................................................................................................................................................................................................CTACGAGGGACTTCTACTACTGC................................................................ 23 0 20 0.05 1 1 0 0 0
................ATTGTCTGAACCGGCACCATTG........................................................................................................................................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0
..................................................................................................................AAGCGGTGTTATGTATGTGA........................................................................................................................................................................................................... 20 1 20 0.05 1 1 0 0 0
....................................TGTCCCCAGCTCCAGTGACTCCTCGCAG................................................................................................................................................................................................................................................................................. 28 0 20 0.05 1 1 0 0 0
............................................................................................................................................................................TGCTTCGGAACAACATCGGACTCCCCT.......................................................................................................................................... 27 0 20 0.05 1 1 0 0 0
...................................................................................................................................................TGCACTTCTCAGTCGTTCTACTA....................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0
......................................................................................................................................................................................CAACATCGGACTCCCCTGCTAC..................................................................................................................................... 22 0 20 0.05 1 1 0 0 0
.....................................................................................................................................................................................................................................................TACAACTACGAGGGACTTCTACTACTG................................................................. 27 0 20 0.05 1 0 1 0 0
.........................................................................................................................................................................................................................................................ACTACGAGGGACTTCTACTACTGC................................................................ 24 0 20 0.05 1 0 1 0 0
.........................................................................................................................................................................................................................................................................................................................GGGGCATCGCTACTACCG...... 18 3 20 0.05 1 0 1 0 0
......................................................................................................................................................................................AAACATCGGACTCCCCTGCTACAAC.................................................................................................................................. 25 1 20 0.05 1 0 1 0 0
.................................................................................................................TAAGGGGTGTTATGTATGTGA........................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 1
..................................................................................................................................................................TTCTACTAATTGCTTCGGAA........................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0
.....................................................................................................................................................................................................................................................................................................GGGATTACTACTACAACTACGAGG.................... 24 0 20 0.05 1 1 0 0 0
.........................................................................GAAAAGACAACCCCCGGAATTCTT................................................................................................................................................................................................................................................ 24 0 20 0.05 1 0 1 0 0
............................................................................................................................................................................TGCTTCGGAACAACATCGGACTCCCCTGC........................................................................................................................................ 29 0 20 0.05 1 1 0 0 0
...CCGACTGTCCTGAATTGTC........................................................................................................................................................................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0
.........................................................................................................CTGGGCGTAAAGGGGTGT...................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 1 0

Anti-sense strand reads

ATGGGCTGACAGGACTTAACAGACTTGGCCGTGGTAACAGGGGTCGAGGTCACTGAGGAGCGTCTAGCTCAGCCTTTTCTGTTGGGGGCCTTAAGAAATTGGGTAGACCCACAATTCCCCACAATACATACACTGGGTAGAGAAGCGACGTGAAGAGTCAGCAAGATGATTAACGAAGCCTTGTTGTAGCCTGAGGGGACGATGTTGATGCTCCCTGATAATGATGTTGATGCTCCCTGATAATGATGTTGATGCTCCCTGAAGATGATGACGTTGATGATGATGTCGATGTTCCCTAATGATGATGTTGATGCTCCCTAACGATGATGGCGCTGAT
*******************************************************************..(((((.........(((......))).........)))))..................((((..((................))..))))......**************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
 V117
male body		 V119
head
............................................................................................................................................................................................................................................................................................GTCGATGTTCCCTAATGATGATGT............................. 24 0 13 3.85 50 30 20 0 0 0
.............................................................................................................................................................................................................................................................GCTCCCTGAAGATGATGACGTTGAT........................................................... 25 0 11 3.27 36 21 15 0 0 0
.......................................................................................................................................................................................................................................................GTTGATGCTCCCTGAAGATGATGACGT............................................................... 27 0 12 3.08 37 11 26 0 0 0
............................................................................................................................................................................................................................................................................................GTCGATGTTCCCTAATGATGATGTT............................ 25 0 13 2.00 26 19 7 0 0 0
.........................................................................................................................................................................................................................................................TGATGCTCCCTGAAGATGATGACGT............................................................... 25 0 12 2.00 24 12 12 0 0 0
..................................................................................................................................................................................................................................................................................................GTTCCCTAATGATGATGTTGATGCT...................... 25 0 13 1.46 19 19 0 0 0 0
..........................................................................................................................................................................................................................................................GATGCTCCCTGAAGATGATGACGT............................................................... 24 0 12 1.33 16 4 12 0 0 0
............................................................................................................................................................GTCAGCAAGATGATTAACGAAGCCTT........................................................................................................................................................... 26 0 20 1.15 23 23 0 0 0 0
...........................................................................................................................................................AGTCAGCAAGATGATTAACGAAGCCTT........................................................................................................................................................... 27 0 20 1.00 20 12 8 0 0 0
........................................................................................................................................................................................................................................................................................................................GCTCCCTAACGATGATGGCGCTGAT 25 0 15 0.80 12 10 2 0 0 0
...............................................................................................................................................................................................................................................................................................................GATGTTGATGCTCCCTAACGATGAT......... 25 0 15 0.80 12 9 3 0 0 0
...........................................................................................................................................................................................................................................................................................TGTCGATGTTCCCTAATGATGATGT............................. 25 0 13 0.77 10 5 5 0 0 0
................................................................................................................................................................................................................................................................................................................ATGTTGATGCTCCCTAACGATGAT......... 24 0 15 0.67 10 3 7 0 0 0
.................AACAGACTTGGCCGTGGTAACAGGGGT..................................................................................................................................................................................................................................................................................................... 27 0 19 0.63 12 0 12 0 0 0
.................................................................................................................................................CGACGTGAAGAGTCAGCAAGATGAT....................................................................................................................................................................... 25 0 20 0.60 12 11 0 1 0 0
.............................................................................................................................................................TCAGCAAGATGATTAACGAAGCCTT........................................................................................................................................................... 25 0 20 0.55 11 11 0 0 0 0
.TGGGCTGACAGGACTTAACAGACTT....................................................................................................................................................................................................................................................................................................................... 25 0 19 0.47 9 7 2 0 0 0
..............................................................................................................................................................................................................................................................................................CGATGTTCCCTAATGATGATGTTGAT......................... 26 0 13 0.46 6 5 1 0 0 0
........................................................................................................................................................................................................................................................TTGATGCTCCCTGAAGATGATGACGT............................................................... 26 0 12 0.42 5 0 5 0 0 0
...........................................................................................................................................................................................................................................................ATGCTCCCTGAAGATGATGACGT............................................................... 23 0 12 0.42 5 2 3 0 0 0
............................................................................................................................................................................................................................................................................................................GATGATGTTGATGCTCCCTAACGAT............ 25 0 15 0.40 6 6 0 0 0 0
............................................................................................................................................................................................GCCTGAGGGGACGATGTTGATGCT............................................................................................................................. 24 0 20 0.40 8 8 0 0 0 0
........................................................GGAGCGTCTAGCTCAGCCTTTTCTGT............................................................................................................................................................................................................................................................... 26 0 20 0.40 8 7 1 0 0 0
...........................................................................................................................................................................................................................................................ATGCTCCCTGAAGATGATGACGTTGAT........................................................... 27 0 11 0.36 4 2 2 0 0 0
........................................................................................................AGACCCACAATTCCCCACAATACAT................................................................................................................................................................................................................ 25 0 20 0.35 7 5 2 0 0 0
...................................................................................................TGGGTAGACCCACAATTCCCCACAAT.................................................................................................................................................................................................................... 26 0 18 0.33 6 3 3 0 0 0
..................................................................................................................................................................................................................................................................................................................GTTGATGCTCCCTAACGATGAT......... 22 0 15 0.33 5 0 5 0 0 0
ATGGGCTGACAGGACTTAACAGACTT....................................................................................................................................................................................................................................................................................................................... 26 0 19 0.32 6 5 0 1 0 0
......TGACAGGACTTAACAGACTTGGCCGT................................................................................................................................................................................................................................................................................................................. 26 0 16 0.31 5 3 2 0 0 0
.................................................................................................................................................................................................................................................................................................TGTTCCCTAATGATGATGTTGATGCT...................... 26 0 13 0.31 4 2 1 0 1 0
..............................GTGGTAACAGGGGTCGAGGTCACT........................................................................................................................................................................................................................................................................................... 24 0 20 0.30 6 2 4 0 0 0
............................................CGAGGTCACTGAGGAGCGTCTAGC............................................................................................................................................................................................................................................................................. 24 0 20 0.30 6 4 2 0 0 0
...........................................TCGAGGTCACTGAGGAGCGTCTAGCT............................................................................................................................................................................................................................................................................ 26 0 20 0.30 6 5 1 0 0 0
....................................................................................................................................................................................................................................................GATGTTGATGCTCCCTGAAGATGAT.................................................................... 25 0 20 0.30 6 5 1 0 0 0
............................................................................................................................................................................................................................................................TGCTCCCTGAAGATGATGACGTTGAT........................................................... 26 0 11 0.27 3 1 2 0 0 0
..................................................................................................................................................................................................................................................................................................................GTTGATGCTCCCTAACGATGATGG....... 24 0 15 0.27 4 3 1 0 0 0
ATGGGCTGACAGGACTTAACAGACT........................................................................................................................................................................................................................................................................................................................ 25 0 19 0.26 5 4 1 0 0 0
.............................................................................................................................................................................................................................................................GCTCCCTGAAGATGATGACGT............................................................... 21 0 12 0.25 3 1 2 0 0 0
........................................GGGTCGAGGTCACTGAGGAGCGTCT................................................................................................................................................................................................................................................................................ 25 0 20 0.25 5 4 1 0 0 0
.............................CGTGGTAACAGGGGTCGAGGTCACT........................................................................................................................................................................................................................................................................................... 25 0 20 0.25 5 2 3 0 0 0
.......................................................................................................................................................................................................................................................ATTGATGCTCCCTGAAGATGATGACGT............................................................... 27 1 12 0.25 3 0 3 0 0 0
............................................CGAGGTCACTGAGGAGCGTCTAGCT............................................................................................................................................................................................................................................................................ 25 0 20 0.25 5 5 0 0 0 0
.........................................................................................................................................................................................................................................................................................GATGTCGATGTTCCCTAATGATGAT............................... 25 0 12 0.25 3 2 1 0 0 0
.........................................................GAGCGTCTAGCTCAGCCTTTTCTGT............................................................................................................................................................................................................................................................... 25 0 20 0.25 5 4 1 0 0 0
..............................................................................................................................................................................................................................................................................................CGATGTTCCCTAATGATGATGT............................. 22 0 13 0.23 3 2 1 0 0 0
........................................................................................................AGACCCACAATTCCCCACAATACATACAC............................................................................................................................................................................................................ 29 0 18 0.22 4 3 1 0 0 0
....................................................................................................GGGTAGACCCACAATTCCCCACAATACAT................................................................................................................................................................................................................ 29 0 18 0.22 4 3 1 0 0 0
.....................................................................................................................................................................................................................................................................................................................GATGCTCCCTAACGATGATGGCGCTGAT 28 0 15 0.20 3 3 0 0 0 0
.........................................................................................................................................................................................GTAGCCTGAGGGGACGATGTTGATGCT............................................................................................................................. 27 0 20 0.20 4 4 0 0 0 0
.........................................GGTCGAGGTCACTGAGGAGCGT.................................................................................................................................................................................................................................................................................. 22 0 20 0.20 4 0 4 0 0 0
.....................................................................................................................................................................................................................................................................................................................GATGCTCCCTAACGATGATGGCGCT... 25 0 15 0.20 3 3 0 0 0 0
....................................................................................................................................................................................................................................................................................................TCCCTAATGATGATGTTGATGCTCCCT.................. 27 0 20 0.20 4 2 2 0 0 0
....................................................................................................................................................................................................................................................................................................................TGATGCTCCCTAACGATGATGGCGC.... 25 0 15 0.20 3 1 2 0 0 0
.......................................GGGGTCGAGGTCACTGAGGAGCGT.................................................................................................................................................................................................................................................................................. 24 0 20 0.20 4 3 1 0 0 0
.........................................................................................................................................................................TTAACGAAGCCTTGTTGTAGCCTG................................................................................................................................................ 24 0 20 0.20 4 0 4 0 0 0
......................................................................................................................................................................................................................................................................................................CCTAATGATGATGTTGATGCTCCCT.................. 25 0 20 0.20 4 4 0 0 0 0
..............................................................................................................................................................................................................................................................CTCCCTGAAGATGATGACGTTGAT........................................................... 24 0 11 0.18 2 2 0 0 0 0
............................................................................................................................................................................................................................................................TGCTCCCTGAAGATGATGACGT............................................................... 22 0 12 0.17 2 2 0 0 0 0
.....................................................................................................GGTAGACCCACAATTCCCCACAATACAT................................................................................................................................................................................................................ 28 0 18 0.17 3 3 0 0 0 0
.TGGGCTGACAGGACTTAACAGACT........................................................................................................................................................................................................................................................................................................................ 24 0 19 0.16 3 2 1 0 0 0
..........AGGACTTAACAGACTTGGCCGTGGTAAC........................................................................................................................................................................................................................................................................................................... 28 0 19 0.16 3 3 0 0 0 0
...................CAGACTTGGCCGTGGTAACAGGGGT..................................................................................................................................................................................................................................................................................................... 25 0 19 0.16 3 0 3 0 0 0
..........................................................................................................................................................................................................................................................................................ATGTCGATGTTCCCTAATGATGAT............................... 24 0 13 0.15 2 1 1 0 0 0
............................................................................................................................................................................................................................................................................................GTCGATGTTCCCTAATGATGATGTTGAT......................... 28 0 13 0.15 2 2 0 0 0 0
..............................................................................................................................................................................................................................................................................................CGATGTTCCCTAATGATGATGTT............................ 23 0 13 0.15 2 2 0 0 0 0
.............................................................................................................................................................................................................................................................................................TCGATGTTCCCTAATGATGATGT............................. 23 0 13 0.15 2 1 1 0 0 0
...................................................................................................................................................................................................................................................................................................TTCCCTAATGATGATGTTGATGCT...................... 24 0 13 0.15 2 2 0 0 0 0
...............................................................................................................................................................................................................................................................................................GATGTTCCCTAATGATGATGTTGAT......................... 25 0 13 0.15 2 0 2 0 0 0
..........................................................................................................................................................................................................................................................................................ATGTCGATGTTCCCTAATGATGATGT............................. 26 0 13 0.15 2 1 1 0 0 0
........................................................................................................................................................................................................................................................................................AAATGTCGATGTTCCCTAATGAT.................................. 23 2 13 0.15 2 2 0 0 0 0
......................................................GAGGAGCGTCTAGCTCAGCCTTTTCTGT............................................................................................................................................................................................................................................................... 28 0 20 0.15 3 3 0 0 0 0
..........................................GTCGAGGTCACTGAGGAGCGTCTAGC............................................................................................................................................................................................................................................................................. 26 0 20 0.15 3 3 0 0 0 0
..............................GTGGTAACAGGGGTCGAGGTCAC............................................................................................................................................................................................................................................................................................ 23 0 20 0.15 3 1 2 0 0 0
...............................TGGTAACAGGGGTCGAGGTCAC............................................................................................................................................................................................................................................................................................ 22 0 20 0.15 3 0 3 0 0 0
................................GGTAACAGGGGTCGAGGTCACT........................................................................................................................................................................................................................................................................................... 22 0 20 0.15 3 1 2 0 0 0
.............................CGTGGTAACAGGGGTCGAGGTCAC............................................................................................................................................................................................................................................................................................ 24 0 20 0.15 3 0 3 0 0 0
...............................TGGTAACAGGGGTCGAGGTCACT........................................................................................................................................................................................................................................................................................... 23 0 20 0.15 3 0 3 0 0 0
........................................................GGAGCGTCTAGCTCAGCCTTTTCTG................................................................................................................................................................................................................................................................ 25 0 20 0.15 3 3 0 0 0 0
........................................................GGAGCGTCTAGCTCAGCCTTTTCTGTT.............................................................................................................................................................................................................................................................. 27 0 20 0.15 3 2 1 0 0 0
..................................................................................................................................................................................................................................................................................................................GTTGATGCTCCCTAACGATGATGGCGC.... 27 0 15 0.13 2 2 0 0 0 0
....................................................................................................................................................................................................................................................................................................................TGATGCTCCCTAACGATGATGGC...... 23 0 15 0.13 2 0 0 2 0 0
...................................................................................................................................................................................................................................................................................................................TTGATGCTCCCTAACGATGATGGCGCT... 27 0 15 0.13 2 1 1 0 0 0
.....................................................................................................................................TGGGTAGAGGAGCGTCGTAA........................................................................................................................................................................................ 20 3 9 0.11 1 0 1 0 0 0
.......GACAGGACTTAACAGACTTGGCCGTGGT.............................................................................................................................................................................................................................................................................................................. 28 0 18 0.11 2 2 0 0 0 0
.....................GACTTGGCCGTGGTAACAGGGGT..................................................................................................................................................................................................................................................................................................... 23 0 19 0.11 2 0 2 0 0 0
....................................................................TCAGCCTTTTCTGTTGGGGGCCTTAAG.................................................................................................................................................................................................................................................. 27 0 19 0.11 2 1 1 0 0 0
...........GGACTTAACAGACTTGGCCGTGGTAAC........................................................................................................................................................................................................................................................................................................... 27 0 19 0.11 2 2 0 0 0 0
....................AGACTTGGCCGTGGTAACAGGGGT..................................................................................................................................................................................................................................................................................................... 24 0 19 0.11 2 0 2 0 0 0
ATGGGCTGACAGGACTTAACAGAC......................................................................................................................................................................................................................................................................................................................... 24 0 19 0.11 2 1 1 0 0 0
.......................................................................................................................................................................................................................................................GTTGATGCTCCCTGAAGATGATGACG................................................................ 26 0 20 0.10 2 2 0 0 0 0
..........................................GTCGAGGTCACTGAGGAGCGTCTAGCT............................................................................................................................................................................................................................................................................ 27 0 20 0.10 2 2 0 0 0 0
....................................................................................................................................................CGTGAAGAGTCAGCAAGATGAT....................................................................................................................................................................... 22 0 20 0.10 2 1 1 0 0 0
....................................................................................................................................................................................................................................................................................................TCCCTAATGATGATGTTGATGCTCCC................... 26 0 20 0.10 2 2 0 0 0 0
...............................................................................................................................................ATCGACGTGAAGAGTCAGCAAGATGAT....................................................................................................................................................................... 27 1 20 0.10 2 0 2 0 0 0
.................................................................................................................................................................................GCCTTGTTGTAGCCTGAGGGGACGAT...................................................................................................................................... 26 0 20 0.10 2 2 0 0 0 0
.......................................................................................................................................................................................................................................................GTTGATGCTCCCTGAAGATGATG................................................................... 23 0 20 0.10 2 2 0 0 0 0
.......................................................................................................................................................................................................................................................................................................CTAATGATGATGTTGATGCTCCCT.................. 24 0 20 0.10 2 2 0 0 0 0
.............................................................................TCTGTTGGGGGCCTTAAGAAAT.............................................................................................................................................................................................................................................. 22 0 20 0.10 2 0 2 0 0 0
.....................................................................................................................................................................................................................................................ATGTTGATGCTCCCTGAAGATGAT.................................................................... 24 0 20 0.10 2 0 2 0 0 0
.......................................................................................................................................................................GATTAACGAAGCCTTGTTGTAGCCT................................................................................................................................................. 25 0 20 0.10 2 2 0 0 0 0
.............................................GAGGTCACTGAGGAGCGTCTAGC............................................................................................................................................................................................................................................................................. 23 0 20 0.10 2 1 1 0 0 0
.............................................................................................................................................................TCAGCAAGATGATTAACGAAGCCT............................................................................................................................................................ 24 0 20 0.10 2 0 2 0 0 0
.......................................................................................GCCTTAAGAAATTGGGTAGACCCACAA............................................................................................................................................................................................................................... 27 0 20 0.10 2 1 1 0 0 0
........................TTGGCCGTGGTAACAGGGGTCGAGGT............................................................................................................................................................................................................................................................................................... 26 0 20 0.10 2 0 1 0 0 1
..................................................................................................................................................................................CCTTGTTGTAGCCTGAGGGGACGAT...................................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0
.......................................................................................................................................................................................................................................................GTTGATGCTCCCTGAAGATGATGA.................................................................. 24 0 20 0.10 2 2 0 0 0 0
...................................................................................................................................................................................CTTGTTGTAGCCTGAGGGGACGATGT.................................................................................................................................... 26 0 20 0.10 2 2 0 0 0 0
......................................................................................................................................................................................GTTGTAGCCTGAGGGGACGATGT.................................................................................................................................... 23 0 20 0.10 2 2 0 0 0 0
...............................................................................................................................................................................................................................................................TTCCTGAAGATGATGACGTTGATGAT........................................................ 26 1 11 0.09 1 1 0 0 0 0
...............................................................................................................................................................................................................................................................TCCCTGAAGATGATGACGTTGAT........................................................... 23 0 11 0.09 1 1 0 0 0 0
.............................................................................................................................................................................................................................................................GCTACCTGAAGATGATGACGTTGAT........................................................... 25 1 11 0.09 1 0 1 0 0 0
.......................................................................................................................................................................................................................................................GTTGATGCTCCCTGAAGATGAGGACGT............................................................... 27 1 12 0.08 1 1 0 0 0 0
..........................................................................................................................................................................................................................................................GATGCTCCCTGCAGATGATGACGT............................................................... 24 1 12 0.08 1 0 1 0 0 0
........................................................................................................................................................................................................................................................ATGATGCTCCCTGAAGATGATGACGT............................................................... 26 1 12 0.08 1 0 1 0 0 0
.......................................................................................................................................................................................................................................................GTTGATGCTCCCTGAAGATGATGACGTT.............................................................. 28 0 12 0.08 1 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................GATGTCGATGTTCCCTAATGATGATGT............................. 27 0 12 0.08 1 1 0 0 0 0
..........................................................................................................................................................................................................................................................GATGCTCCCTGAAGATGATGACGTT.............................................................. 25 0 12 0.08 1 1 0 0 0 0
......................................................................................................................................................................................................................................................AGTTGATGCTCCCTGAAGATGATGACGT............................................................... 28 1 12 0.08 1 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................GATGTCGATGTTCCCTAATGA................................... 21 0 12 0.08 1 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................ATGTCGATGTCCCCTAATGATGAT............................... 24 1 13 0.08 1 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................GTTCCCTAATGATGATGTTGATGCTT..................... 26 1 13 0.08 1 1 0 0 0 0
................................................................................................................................................................................................................................................................................................ATGTTCCCTAATGATGATGTTGAT......................... 24 0 13 0.08 1 1 0 0 0 0
............................................................................................................................................................................................................................................................................................GTCGATGTTCCCTAATGATGATTT............................. 24 1 13 0.08 1 0 1 0 0 0
..................................................................................................................................................................................................................................................................................................GTTCCCTAATGATGATGTTGATGC....................... 24 0 13 0.08 1 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................GTTCCCTAATGATGATGTTGATGCTCCCT.................. 29 0 13 0.08 1 1 0 0 0 0
...................................................................................................................................................................................................................................................................................................TTCCCTAATGATGATGTTGATGCTCCCT.................. 28 0 13 0.08 1 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................TGTTCCCTAATGATGATGTTG........................... 21 0 13 0.08 1 1 0 0 0 0
.............................................................................................................................................................................................................................................................................................TCGATGTTCCCTAATGATGATGTTGA.......................... 26 0 13 0.08 1 0 1 0 0 0
........................................................................................................................................................................................................................................................................................AATTGTCGATGTTCCCTAATGATGATGT............................. 28 3 13 0.08 1 1 0 0 0 0
...............................................................................................................................................................................................................................................................................................GATGTTCCCTAATGATGATGT............................. 21 0 13 0.08 1 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................TTCCCTAATGATGATGTTGATGCTCC.................... 26 0 13 0.08 1 1 0 0 0 0
.............................................................................................................................................................................................................................................................................................TCGATGTTCCCTAATGATGATGTT............................ 24 0 13 0.08 1 1 0 0 0 0
..............................................................................................................................................................................................................................................................................................CGATGTTCCCTAATGATGATGTTGA.......................... 25 0 13 0.08 1 0 1 0 0 0
..............................................................................................................................................................................................................................................................................................CGATGTTCCCTAATGATGATGTTGATGCT...................... 29 0 13 0.08 1 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................TGTCGATGTTCCCTAATGATGAT............................... 23 0 13 0.08 1 0 1 0 0 0
..............................................................................................................................................................................................................................................................................................CGATGTTCCCTAATGATGATGTTG........................... 24 0 13 0.08 1 0 1 0 0 0
............................................................................................................................................................................................................................................................................................GTCTATGTTCCCTAATGATGATGT............................. 24 1 13 0.08 1 0 1 0 0 0
............................................................................................................................................................................................................................................................................................GTCGATGTTCCCTAATGATTATGTT............................ 25 1 13 0.08 1 0 1 0 0 0
............................................................................................................................................................................................................................................................................................GTCGATGTTCCCTAATGACGATGTT............................ 25 1 14 0.07 1 0 1 0 0 0
..................................................................................................................................................................................................................................................................CCGAAGATGATGACGTTGATGAT........................................................ 23 1 14 0.07 1 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................CCCTAACGATGATGTCGCTGAT 22 1 15 0.07 1 0 1 0 0 0
..............................................................................................................................................................................................................................................................................................................TGATGTTGATGCTCCCTAACGAT............ 23 0 15 0.07 1 0 1 0 0 0
........................................................................................................................................................................................................................................................................................................................GCTCCCTAACGATGATGGCGCTGA. 24 0 15 0.07 1 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................GTTGATGCTCCCTAACGAT............ 19 0 15 0.07 1 0 1 0 0 0
....................................................................................................................................................................................................................................................................................................................TGATGCTCCCTAACGATGATGGCGCT... 26 0 15 0.07 1 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................GTTGATGCTCCCTAACGATGATG........ 23 0 15 0.07 1 1 0 0 0 0
...............................................................................................................................................................................................................................................................................................................GATGTTGATGCTCCCTAACGATGATG........ 26 0 15 0.07 1 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................................................ATTGCTCCCTAACGATGATGGCGCTGA. 27 2 15 0.07 1 0 1 0 0 0
....................................................................................................................................................................................................................................................................................................................GGATGCTCCCTAACGATGATGGCGCTGAT 29 1 15 0.07 1 1 0 0 0 0
........................................................................................................................................................................................................................................................................................................................GCTCCCTAACGATGATGGCGCT... 22 0 15 0.07 1 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TCCCTAACGATGATGGAGAAGAT 23 3 15 0.07 1 0 0 1 0 0
.......................................................................................................................................................................................................................................................................................................................CGCTCCCTAACGATGATGGCGCTGAT 26 1 15 0.07 1 0 1 0 0 0
.............................................................................................................................................................................................................................................................................................................ATGATGTTGATGCTCCCTAACGAT............ 24 0 15 0.07 1 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................................TGATGCTCCCTAACGATGAT......... 20 0 15 0.07 1 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................GTTGATGCTCCCTAACGATGATGGC...... 25 0 15 0.07 1 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................................ATGCTCCCTAACGATGATGGCGCTGAT 27 0 15 0.07 1 0 1 0 0 0
....................................................................................................................................................................................................................................................................................................................TGATGCTCCCTAACGATGATGGCGCTGA. 28 0 15 0.07 1 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................TTTGATGCTCCCTAACGATGA.......... 21 1 15 0.07 1 0 1 0 0 0
...............................................................................................................................................................................................................................................................................................................GATGTTGATGCTCTCTAACGATGAT......... 25 1 15 0.07 1 0 1 0 0 0
....GCTGACAGGACTTAACAGACTTGGCCGT................................................................................................................................................................................................................................................................................................................. 28 0 16 0.06 1 1 0 0 0 0
......TGACAGGACTTAACAGACTAGGCCGT................................................................................................................................................................................................................................................................................................................. 26 1 16 0.06 1 1 0 0 0 0
...............................................................CTAGCTCAGCCTTTTCTGTTGGGGGCCT...................................................................................................................................................................................................................................................... 28 0 18 0.06 1 1 0 0 0 0
.......GACAGGACTTAACAGACTTGGCCGT................................................................................................................................................................................................................................................................................................................. 25 0 18 0.06 1 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................CCTAATGATGATGTTGATGCTCCCTAA................ 27 0 18 0.06 1 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................................CCCTAATGATGATGTTGATGCTCCCTA................. 27 0 18 0.06 1 1 0 0 0 0
............................................................................................................CCACAATTCCCCACAATACATACAC............................................................................................................................................................................................................ 25 0 18 0.06 1 1 0 0 0 0
.........................................................................................................GACCCACAATTCCCCACAATACATAC.............................................................................................................................................................................................................. 26 0 18 0.06 1 1 0 0 0 0
......................................................................................................GTAGACCCACAATTCCCCACAATACAT................................................................................................................................................................................................................ 27 0 19 0.05 1 1 0 0 0 0
......................................................................AGCCTTTTCTGTTGGGGGCCTTAAG.................................................................................................................................................................................................................................................. 25 0 19 0.05 1 1 0 0 0 0
...................AAGACTTGGCCGTGGTAACAGGGGT..................................................................................................................................................................................................................................................................................................... 25 1 19 0.05 1 1 0 0 0 0
.....................................................................................GGGCCTTAAGAAATTGGGTAGACCCACAA............................................................................................................................................................................................................................... 29 0 19 0.05 1 0 1 0 0 0
..GGGCTGACAGGACTTAACAGACTT....................................................................................................................................................................................................................................................................................................................... 24 0 19 0.05 1 1 0 0 0 0
.......................................................................GCCTTTTCTGTTGGGGGCCTTAAGAAAT.............................................................................................................................................................................................................................................. 28 0 19 0.05 1 1 0 0 0 0
TTGGGCTGACAGGACTTAACAGACTT....................................................................................................................................................................................................................................................................................................................... 26 1 19 0.05 1 1 0 0 0 0
...............................................................ATAGCTCAGCCTTTTCTGTTGGGGGCCT...................................................................................................................................................................................................................................................... 28 1 19 0.05 1 1 0 0 0 0
..................ACAGACTTGGCCGTGGTAACAGGGGT..................................................................................................................................................................................................................................................................................................... 26 0 19 0.05 1 0 1 0 0 0
ATGGGCTGACAGGACTTAACAGACTTG...................................................................................................................................................................................................................................................................................................................... 27 0 19 0.05 1 1 0 0 0 0
..GGGCTGACAGGACTTAACAGACT........................................................................................................................................................................................................................................................................................................................ 23 0 19 0.05 1 0 1 0 0 0
ATGGGCTGACAGGGCTTAACAGACTT....................................................................................................................................................................................................................................................................................................................... 26 1 19 0.05 1 0 1 0 0 0
.....................................................................CAGCCTTTTCTGTTGGGGGCCTTAAGA................................................................................................................................................................................................................................................. 27 0 19 0.05 1 1 0 0 0 0
.............ACTTAACAGACTTGGCCGTGGTAAC........................................................................................................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
.......................................................AGGAGCGTCTAGCTCAGCCTTTTCT................................................................................................................................................................................................................................................................. 25 0 20 0.05 1 0 0 0 1 0
.............................................................................................................................................................TCAGCAAGATGATTAACGAAGCCTTGTT........................................................................................................................................................ 28 0 20 0.05 1 0 0 1 0 0
..........................................................................................................................................................TTGTCAGCAAGATGATTAACGAAGCCT............................................................................................................................................................ 27 2 20 0.05 1 1 0 0 0 0
......................................ATGGGTCGAGGTCACTGAGGAGCGTCT................................................................................................................................................................................................................................................................................ 27 1 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................................CTTGTTGTAGCCTGAGGGGACGAT...................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................................................................................GATGTTGATGCTCCCTGAAGATGA..................................................................... 24 0 20 0.05 1 1 0 0 0 0
........................................TGGTCGAGGTCACTGAGGAGCGTCT................................................................................................................................................................................................................................................................................ 25 1 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................................................AAGCCTGAGGGGACGATGTTGATGCT............................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................TTGTTGTAGCCTGAGGGGACGATGTT................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................................TGTAGCCTGAGGGGACGATGTTGATGC.............................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................................................................................................TGTTGATGCTCCCTGAAGATGAT.................................................................... 23 0 20 0.05 1 0 1 0 0 0
.................................................TCACTGAGGAGCGTCTAGCTCAGCCTT..................................................................................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
..........................GGCCGTGGTAACAGGGGTCGAGG................................................................................................................................................................................................................................................................................................ 23 0 20 0.05 1 1 0 0 0 0
............................CCGTGGTAACAGGGGTCGAGGTC.............................................................................................................................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
...................................................................CTCAGCCTTTTCTGTTGGGGCCT....................................................................................................................................................................................................................................................... 23 2 20 0.05 1 1 0 0 0 0
..............................GTGGTACCAGGGGTCGAGGTCACT........................................................................................................................................................................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................................................................................................................................................CCTAATGATGATGTTGATGCTCCC................... 24 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................................................................................................................................CCCTAATGATGATGTTGATGCTCC.................... 24 0 20 0.05 1 1 0 0 0 0
.....................................................TGAGGAGCGTCTAGCTCAGCCTTTTCT................................................................................................................................................................................................................................................................. 27 0 20 0.05 1 0 1 0 0 0
....................................TTAGGGGTCGAGGTCACTGAGGAGCGT.................................................................................................................................................................................................................................................................................. 27 2 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................TCCCTAATGATGATGTTGATGC....................... 22 0 20 0.05 1 1 0 0 0 0
..........................ATCCGTGGTAACAGGGGTCGAGGTCACT........................................................................................................................................................................................................................................................................................... 28 2 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................................................................................TTTGATGCTCCCTGAAGATGATGAC................................................................. 25 1 20 0.05 1 0 1 0 0 0
..........................................................................................................................................................GAGTCAGCAAGATGATTAACGAAGCCT............................................................................................................................................................ 27 0 20 0.05 1 0 1 0 0 0
...........................................................................................TAAGAAATTGGGTAGACCCACAAT.............................................................................................................................................................................................................................. 24 0 20 0.05 1 0 1 0 0 0
..............................................................................................................................................................................................CTGAGGGGACGATGTTTATGC.............................................................................................................................. 21 1 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................................................................................................GATTGATGCTCCCTGAAGATGAT.................................................................... 23 2 20 0.05 1 1 0 0 0 0
.............................................................................TCTGTTGGGGGCCTTAAGAAATTGGGT......................................................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
...................TAGACTTGGCCGTGGTAACAGGGGT..................................................................................................................................................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0 0
.................................................TCACTGAGGAGCGTCTAGCTCAGCCT...................................................................................................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
...................................................ACTGAGGAGCGTCTAGCTCAGCC....................................................................................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
...................................................ACTGAGGAGCGTCTAGCTCAGCCTTT.................................................................................................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
.........................................GGTCGATGTCACTGAGGAGCGT.................................................................................................................................................................................................................................................................................. 22 1 20 0.05 1 0 1 0 0 0
..........................................GTCGAAGTCACTGAGGAGCGTCTAGCT............................................................................................................................................................................................................................................................................ 27 1 20 0.05 1 1 0 0 0 0
...........................................................................TTTCTGTGGGGGGCCTTAAGAAAT.............................................................................................................................................................................................................................................. 24 1 20 0.05 1 1 0 0 0 0
.................AACAGACTTGGCCGTGGTAAC........................................................................................................................................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
.................AACAGACTTGTCCGTGGTAACAGGGGT..................................................................................................................................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0
.....................................................................................................................................................................................TGTTGTAGCCTGAGGGGACGATGTT................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
..................................................................................................................................................GACGTGAAGAGTCAGCAAGATGAT....................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0
......................................................GAGGAGCGTCTAGCTCAGCCTTTTCT................................................................................................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................TCTTGTTGTAGCCTGAGGGGACGATGT.................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0
...........................................................................TTTCTGTTGGGGGCCTTAAGAAAT.............................................................................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................AGCAAGATGATTAACGAAGCC............................................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0
........................................................................................................AGACCCACAATTCCCCACAATACA................................................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
........................TTGGCCGTGGTAACAGGGGTCGAGG................................................................................................................................................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................AGTCAGCAAGATGATTAACGAAGCCT............................................................................................................................................................ 26 0 20 0.05 1 0 0 0 1 0
..........................................GTCGAGGTCACTGAGGAGCGTCT................................................................................................................................................................................................................................................................................ 23 0 20 0.05 1 1 0 0 0 0
.......................................GGGGTCGAGGTCACTGAGGAGCG................................................................................................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................................................................................................................TGATGCTCCCTGAAGATGATGAC................................................................. 23 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................GAGTCAGCAAGATGATTAACGAAGG.............................................................................................................................................................. 25 1 20 0.05 1 0 1 0 0 0
..............................................................................CTGTTGGGGGCCTTAAGAAATTGGGT......................................................................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0
...........................................................................................................................................................................................AGCCTGAGGGGACGATGTTGAT................................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0
................................................................................GTTGGGGGCCTTAAGAAATTGGGT......................................................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................TTCTTGTTGTAGCCTGAGGGGACGATGT.................................................................................................................................... 28 2 20 0.05 1 1 0 0 0 0
................................................................................................................................................................................TGCCTTGTTGTAGCCTGAGGGGACGAT...................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................ATCTTGTTGTAGCCTGAGGGGACGATGT.................................................................................................................................... 28 2 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................AGAGTCAGCAAGATGATTAACGAAGCCT............................................................................................................................................................ 28 0 20 0.05 1 0 0 1 0 0
........................................GGGTCGAGGTCACCGAGGAGCGTCT................................................................................................................................................................................................................................................................................ 25 1 20 0.05 1 1 0 0 0 0
.................................................................................................................................................TGACGTGAAGAGTCAGCAAGATGAT....................................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0
............................................................................................AAGAAATTGGGTAGACCCACAATT............................................................................................................................................................................................................................. 24 0 20 0.05 1 0 1 0 0 0
......................................................................................................................................................TGAAGAGTCAGCAAGATGATTAACG.................................................................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0
.......................................................................................................................................................................................TTGTAGCCTGAGGGGACGATGTTGA................................................................................................................................. 25 0 20 0.05 1 0 1 0 0 0
....................................................................................................................................................................................................................................................GATGTTGATGCTCCCTGAAGAT....................................................................... 22 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................................................................................ATGTTGATGCTCCCTGAAGAT....................................................................... 21 0 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000001124:5947-6283 + dwi_227 TACC----------------CGACTGT--CCTGAATTGTCTGAACCGGCACCATTGTC---------CCCAGCTCCA-----------------------------------GTGACTCCTCGCAGATCGAGTCGGAAAAGACAACCCCCGGAATTCTTTAAC---CCATCTGGGTGTTAAGGGGTGTTATGTATGTGACC--CATCTCTTCGCTGCACT-----------------TCTCAGTCGTTC--TACTAATTGCTTCGGAACAACATCGGACTCCCCTGCTACAACTACGA-----GGGACT---------ATTACTACAACTACGA---GGG---------ACTATTACTACAACTACGAGGGACTTCTACTACTGCAACTACTACTA------------------------------C------AGCTACAAG--GGATTACTACT-------------ACAACTACGAGGG-------ATTGCTACTACCGCGACT------------A
droVir3 scaffold_8179:858-981 + CTAC----------------AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---ACAACTACAACTACA---------------ACTACAACTA----------C---------AACTACAACTAC------AAC----TACAA------------CTACAACTACAACTA---CAACTA------C------AACTA------CGACTACAACT-------------ACAGCTACAAGCT-------ACAACTACAACTACGACT------------A
droMoj3 scaffold_6500:24097370-24097512 - ATAG----------------TACTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACTACTATTATTATTACT---------------ACTACTACTA---C-TACTACTA---------------------GTATTAC----TACTG------------CTACTACTACTACTA---CTACTA------CTACTACTATTATTATTTTTACTACTACT-ACTACTACTACT--------------------ACTACTATTACTACTACT------------A
droGri2 scaffold_15110:598669-598818 + CTAC----------------TAATTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTGA-------------------CTACTACTACTA-----TTAACT---------------ACTACAACTATTGTTG---------AC---TACTACAACTAGTAACTACTT---------------------CTGCTACTACTACTACTACAA---------T------TGCTAATTA--CGATTACTACTAAA------T---ACTACTACTA----------ACTACTACTACTAACACT-----------AT
droPer2 scaffold_21:1029193-1029297 - ACTA----------------CTTCTGAAACTACTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------------------GTGTTTCCCACTACTGCAACTACTACTA------------------------------C------TTCTACTGT--CTACTTCTACT-------------ACTACTA-----------------CTACTTCTACTACTATCCTCAAAACAA
droAna3 scaffold_13248:1230805-1230941 + CTAC----------------TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---ACTA---TAGGTACT---------ACTACTACTACTACTA----------TAGGTACTACTACTACTACTACTCGGTACTA---------------------------CTA---------CTACTACTACTAC------TACTACTCG--GTACTACTACT-------------ACTACTT-TAGGTTCC----ACTACTAATATAGCGACT------------G
droBip1 scf7180000391421:11343-11539 - ACCC----------------CATCTCAAGCGGTAGCTGGCG------------------GATCCACAACTCCAGCTGGGCCACAGCGTTCGCCTGAGCCAAACGGGACTGGGGGACCGCCACGCAGATCGGCCCGTGACCGTCGCCGCCCACAGTTCTACGAC---CCGTCTGGGTGTTAAGGGGTGTTATGTATGCGAC--------------TGCATTCTCTCGCGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATCTCGTTCGACTG------------A
droKik1 scf7180000302684:891189-891270 - CTAC----------------AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---AC-------------------------------------------------TT---------------------GCGCTTCTTGCAACTGCAACTACAACTA------------------CAACTACAACTAC-------------------------------AACTACAACT--------------------ACAACTACAACTACAACT------------A
droFic1 scf7180000453344:2124-2241 + CCGC----------------GC------------------------------------------------------------------------------------------------------AGATCGGCCGTTGACCGTCGCCGCCCGCAGTTCTACGAT---CCATCTGGGTGTTAAGGGGTGTTATGTATGCGAC--------------TGCATTATCTCGCGAAGTGATCTCGTCAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCACTA------------A
droEle1 scf7180000490309:6074-6212 + TCGC----------------CGACAGTGAGCAGCGCTGTAA------------------GCACAGGCGTTATCTTTGG--A------------------------------AGAAAAACAAGACAGATCCAGGCGACAGCAACAACCCGCACAAAACTATTAC---GCATCTTTGTGTTAAGAGGTGTGGTGCATGCGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGTCTC------------T
droRho1 scf7180000774661:6130-6217 + TCGT----------------AGG--------------------------------------------------------------------------------------------------------TCACATCGACACAGGAAGCCTACGGAATTCTATAGTTCCTCAACTGGGTGTTAAGGGGTGTTATGTATTTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGACCC------------A
droBia1 scf7180000302136:2051265-2051419 - ACAACATGCGCCCCAGCCACTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---ACT---ACAACAACCACTGAGGCTCCAACCACGACTACAA---C-A---------ACATGTACGCCAACTACAA-------------------------------------CGACTACCACAACTACGACTAC------CACAACTAA--CGACTACTACA-------------ACAACTA-------CGACAACGTGCG-CCCCAGCAACT------------A
droTak1 scf7180000415239:30334-30539 + CTGA----------------CCTACGCGA--------------ACCACCACCGTCATCTGCTCTGGCCTTAAATTCA-----------------------------------CCGGATCTACGCCGATCAAGTCGTCATAGAGTGGCGACACAATTTTACCAA---TCATCCGGGTGTTAAGGGGTGTTGTGTATGCCAGCAGCATATACACACTGCATT-----------------CGCCAGTCACACGTCAGCAGTCAACGGAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAC--------------------GTCGATCTCACAAGTCAC------------A
droEug1 scf7180000408744:128105-128236 + TAC-----------------TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACTACTA-----CATACT---------TTTACTACTACTACTA---CAT---------ACTTTTACTACTACTACTACATACTT---------------------------TTA---------CTACTACTACTACCACTACTACTACTACTCTTATTACTACT-------------T-------------CTACTACATA---CTTTTACTACT------------A
dm3 chrX:5194108-5194204 - ACTA----------------CTACTACTACTACTACTACTA------------------CTACTACTACTACTACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTACTACTACTAC-------------------------------TACTACTACT--------------------ACTACTACTACTACTACT------------A
droYak3 v2_chr2L_random_001:169553-169625 + CGTA----------------GA---------------------------------------------------------------------------------------------------------TCTCAGCGTAGCAGATGACGTCCGGAAATATACAAC---CCATCCGTGTGTTAAGGAGTTTTGTATGTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TACC----------------CGACTGT--CCTGAATTGTCTGAACCGGCACCATTGTC---------CCCAGCTCCA-----------------------------------GTGACTCCTCGCAGATCGAGTCGGAAAAGACAACCCCCGGAATTCTTTAAC---CCATCTGGGTGTTAAGGGGTGTTATGTATGTGACC--CATCTCTTCGCTGCACT-----------------TCTCAGTCGTTC--TACTAATTGCTTCGGAACAACATCGGACTCCCCTGCTACAACTACGA-----GGGACT---------ATTACTACAACTACGA---GGG---------ACTATTACTACAACTACGAGGGACTTCTACTACTGCAACTACTACTA------------------------------C------AGCTACAAG--GGATTACTACT-------------ACAACTACGAGGG-------ATTGCTACTACCGCGACT------------ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTACT-------------ACAACTACGAGGG-------ATTGC..........................25151.1317010160
..................................................................................................................................................................................................................................................................TGCTTCGGAACAACATCGGACTCCCC...........................................................................................................................................................................................................................................26200.8517017000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACT-------------ACAACTACGAGGG-------ATTGCTAC.......................25150.47701060
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACTACT-------------ACAACTACGAGGG-------ATTGC..........................27150.33502030
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------ACAACTACGAGGG-------ATTGCTACTACCG..................27150.33500050
..........................................................................................................................................................................................................................................................................................................................................................................................................TA------------------------------C------AGCTACAAG--GGATTACTACT-------------ACAAC..............................................28130.31400040
.....................................................................................................................................................................................................................................................................................................................................................................TACAACTACGAGGGACTTCTACTAC.........................................................................................................................................25200.20402020
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTACT-------------ACAACTACGAGGG-------ATTGCT.........................26150.20300030
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTACT-------------ACAACTACGAGGG-------ATTG...........................24150.20302010
...........................................................................................................................................................................................................................................................................................................................................................................TACGAGGGACTTCTACTACTGCAAC...................................................................................................................................25110.18201010
......................................................................................................................................................................................................................................................................................................................................................................ACAACTACGAGGGACTTCTACTACTGCAA....................................................................................................................................29120.17202000
..................................................................................................................................................................................................................................................................TGCTTCGGAACAACATCGGACTCCCCTG.........................................................................................................................................................................................................................................28200.15303000
.....................................................................................................................................................................................................................................................................TTCGGAACAACATCGGACTCCCC...........................................................................................................................................................................................................................................23200.15303000
....................................................................................................................................................................................................................................................................CTTCGGAACAACATCGGACTCCC............................................................................................................................................................................................................................................23200.15303000
......................................................................................................................................................................................................................................................................................................................................................................ACAACTACGAGGGACTTCTACTACTG.......................................................................................................................................26200.15303000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGAGGG-------ATTGCTACTACCG..................22150.13201010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGAGGG-------ATTGCTACTACCGCG................24150.13202000
.............................................................................................................................................................................................................................................TCTCAGTCGTTC--TACTAATTGCTTCGG.............................................................................................................................................................................................................................................................27200.10200020
.........................................................................................................................CGCAGATCGAGTCGGAAAAGA.........................................................................................................................................................................................................................................................................................................................................................................................21200.10202000
....................................................................................................................................................................................................................................................................CTTCGGAACAACATCGGACTCCCC...........................................................................................................................................................................................................................................24200.10202000
..................................ATTGTCTGAACCGGCACCATTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10202000
..............................................................................................................................................................................................................................................................TAATTGCTTCGGAACAACATCGGAC................................................................................................................................................................................................................................................25200.10200020
....................................................................................................................................................................................................................................................................CTTCGGAACAACATCGGACTCC.............................................................................................................................................................................................................................................22200.10202000
.......................................................................................................................................................................................................................................................................................................................................................................CAACTACGAGGGACTTCTACTA..........................................................................................................................................22200.10202000
.........................................................................TCCA-----------------------------------GTGACTCCTCGCAGATCGAG...................................................................................................................................................................................................................................................................................................................................................................................................24200.10202000
...........................................................................................................................................................................................................................T-----------------TCTCAGTCGTTC--TACTAATTGCT.................................................................................................................................................................................................................................................................24200.10202000
......................................................................................................................................................................................................................................................................TCGGAACAACATCGGACTCCCCTGC........................................................................................................................................................................................................................................25200.10202000
.........................................................................TCCA-----------------------------------GTGACTCCTCGCAGATCGAGT..................................................................................................................................................................................................................................................................................................................................................................................................25200.10200020
..........................................................................................................................................................................................................................................................................................................................................................................CTACGAGGGACTTCTACTACTGCAAC...................................................................................................................................26110.09100010
..............................................................................................................................................................................................................................................................................................................................................................................GAGGGACTTCTACTACTGCAACTA.................................................................................................................................24110.09101000
.............................................................................................................................................................................................................................................................................................................................................................................CGAGGGACTTCTACTACTGCAACT..................................................................................................................................24110.09101000
...........................................................................................................................................................................................................................................................................................................................................................................TACGAGGGACTTCTACTACTGCAACTAC................................................................................................................................28110.09101000
...................................................................................................................................................................................................................................................................................................................................................................................ACTTCTACTACTGCAACTACTACT............................................................................................................................24120.08101000
............................................................................................................................................................................................................................................................................................................................................................................ACGAGGGACTTCTACTACTGCA.....................................................................................................................................22120.08101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAG--GGATTACTACT-------------ACAACTACGAG........................................28130.08101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAG--GGATTACTACT-------------ACAACTACGA.........................................27130.08101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAG--GGATTACTACT-------------ACAACTACGAG........................................27130.08100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................C------AGCTACAAG--GGATTACTACT-------------...................................................21130.08100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAG--GGATTACTACT-------------ACAACTACA..........................................26130.08100010
..........................................................................................................................................................................................................................................................................................................................................................................................................TA------------------------------C------AGCTACAAG--GGATTACTAC.................................................................22130.08100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAG--GGATTACTACT-------------ACAACTACGA.........................................25130.08101000
..................................................................................................................................................................................................................................................................................................................................................................................GACTTCTACTACTGCAACT..................................................................................................................................19130.08101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAG--GGATTACTACT-------------ACAACTACGAG........................................26130.08100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------ACAACTACGAGGG-------ATTGCTACTAC....................25150.07101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACTACGAGGG-------ATTGCTACTAC....................24150.07101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTACT-------------ACAACTACGAGGG-------ATTGCTA........................27150.07101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------ACAACTACGAGGG-------ATTGCTACTACCGCG................29150.07100100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACTACT-------------ACAACTACGAGGG-------ATTG...........................26150.07100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACTACGAGGG-------ATTGCTACTA.....................23150.07101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------ACAACTACGAGGG-------ATTGCTACTACC...................26150.07100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGGG-------ATTGCTACTACC...................20150.07100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACT-------------ACAACTACGAGGG-------ATTGCTA........................26150.07101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGGG-------ATTGCTACTACCGCGAC..............25150.07101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTACT-------------ACAACTACGAGGG-------ATTGCTAC.......................27150.07101000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------ACAACTACGAGGG-------ATTGCTACTACCGC.................28150.07101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT-------------ACAACTACGAGGG-------ATTGCTA........................23150.07101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGGG-------ATTGCTACTACCGC.................22150.07101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT-------------ACAACTACGAGGG-------ATTGCT.........................22150.07101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGAGGG-------ATTGCTACTACCGCGAC..............26150.07100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTACT-------------ACAACTACGAGGG-------ATTGC..........................26150.07100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-------------ACAACTACGAGGG-------ATTGCTA........................22150.07101000
.....................................................................................................................................................................................................................................................................................................................................................................................TTCTACTACTGCAACTACTACTA------------------------------C------AGC...................................................................................27170.06101000
........................................................................................................................................................................................................................................................................................................................................................................................TACTACTGCAACTACTACTA------------------------------C------AGC...................................................................................24180.06101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................G--GGATTACTACT-------------ACAACTACGAGGG-------ATT............................28180.06101000
........................TGT--CCTGAATTGTCTGAACCGGCACCAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28180.06101000
................................................................................................................................CGAGTCGGAAAAGACAACCCCCGGAAT............................................................................................................................................................................................................................................................................................................................................................................27190.05101000
..........................T--CCTGAATTGTCTGAACCGGCACCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25190.05101000
....................................TGTCTGAACCGGCACCATTGTC---------CCCAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................27190.05101000
........................................TGAACCGGCACCATTGTC---------CCCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................24190.05101000
....................................TGTCTGAACCGGCACCATTGTC---------CCCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................28190.05101000
.......................CTGT--CCTGAATTGTCTGAACCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23190.05101000
................................................................................................................................CGAGTCGGAAAAGACAACCCCCGGAA.............................................................................................................................................................................................................................................................................................................................................................................26190.05101000
.............................CCTGAATTGTCTGAACCGGCACCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24190.05101000
...............................................................................................................................................................................................................................................................AATTGCTTCGGAACAACATCGGAC................................................................................................................................................................................................................................................24200.05101000
.................................................................................................................................................................................................................................................................TTGCTTCGGAACAACATCGGACTCCCC...........................................................................................................................................................................................................................................27200.05101000
....................................................................................................................................................................................AGGGGTGTTATGTATGTGA................................................................................................................................................................................................................................................................................................................................19200.05100100
..................................................CCATTGTC---------CCCAGCTCCA-----------------------------------GTGACT.................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
....................................................................................................................................................................................................................................................................................................................................................................CTACAACTACGAGGGACTTCTA.............................................................................................................................................22200.05101000
......................................................................................................................................................................................................................................................................................................................................................................ACAACTACGAGGGACTTCTACTA..........................................................................................................................................23200.05101000
...............................................................................................................................................................................TGTTAAGGGGTGTTATGTATGTGAC...............................................................................................................................................................................................................................................................................................................................25200.05101000
......................................................................................................................................................................................................................................................................................................................................................................ACAACTACGAGGGACTTCTACT...........................................................................................................................................22200.05100010
.................................................................................................................................................................................................................................................................................TCGGACTCCCCTGCTACAACTAC...............................................................................................................................................................................................................................23200.05101000
..........................................................................................................................................................................................................................CT-----------------TCTCAGTCGTTC--TACTAATTGCT.................................................................................................................................................................................................................................................................25200.05101000
..............................................................................................................................................................................................................................................................................ACATCGGACTCCCCTGCTAC.....................................................................................................................................................................................................................................20200.05101000
...........................................................................................................................................................................................................................................................TACTAATTGCTTCGGAACAACATCGGAC................................................................................................................................................................................................................................................28200.05101000
............................................................................................................................................................................................................................................................................CAACATCGGACTCCCCTGCTA......................................................................................................................................................................................................................................21200.05101000
.......................................................................................................................................................................................................................GCACT-----------------TCTCAGTCGTTC--TACTAATTG...................................................................................................................................................................................................................................................................26200.05101000
.........................................................................................................................CGCAGATCGAGTCGGAAAAGACAACC....................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
.......................................................................................................................................................................................................................................................TC--TACTAATTGCTTCGGAACAACATCGGA.................................................................................................................................................................................................................................................29200.05101000
.........................................................................................................................CGCAGATCGAGTCGGAAAAGACAAC.....................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
.......................................................................................................................................................................................................................GCACT-----------------TCTCAGTCGTTC--TACTAAT.....................................................................................................................................................................................................................................................................24200.05101000
.......................................................................................................................................................................................................................GCACT-----------------TCTCAGTCGTTC--TACTAATTGC..................................................................................................................................................................................................................................................................27200.05101000
.................................................................................................................................................................................................................................................AGTCGTTC--TACTAATTGCTTCGGA............................................................................................................................................................................................................................................................24200.05100010
.....................................................................................................................................................................................................................................................GTTC--TACTAATTGCTTCGGAA...........................................................................................................................................................................................................................................................21200.05100010
...........................................................................................................................................................................................................................................................TACTAATTGCTTCGGAACAACATCGG..................................................................................................................................................................................................................................................26200.05101000
............................................................................................................................................................................................................................................................................CAACATCGGACTCCCCTGCTACAAC..................................................................................................................................................................................................................................25200.05100010
..................................................................................................................................................................................................................................................GTCGTTC--TACTAATTGCTTCGGAAC..........................................................................................................................................................................................................................................................25200.05101000
.............................................................................................................................................................................................................................................................................AACATCGGACTCCCCTGCTACAACT.................................................................................................................................................................................................................................25200.05101000
.......................................................................................................................................................GAATTCTTTAAC---CCATCTGGGTG......................................................................................................................................................................................................................................................................................................................................................23200.05101000
...............................................................................................................................................................................................................................................TCAGTCGTTC--TACTAATTGCTTCGGAA...........................................................................................................................................................................................................................................................27200.05101000
..........................................................................................................................................................................................................................................................................................CCTGCTACAACTACGA-----GGGA....................................................................................................................................................................................................................20200.05100100
......................................................TGTC---------CCCAGCTCCA-----------------------------------GTGACTCCTCGCAGA........................................................................................................................................................................................................................................................................................................................................................................................................29200.05101000
.................................................................................................................................................................................TTAAGGGGTGTTATGTATGTG.................................................................................................................................................................................................................................................................................................................................21200.05100010
.........................................................................TCCA-----------------------------------GTGACTCCTCGCAGATCGAGTCG................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
..................................................................................................................................................................................TAAGGGGTGTTATGTATGTGACC--............................................................................................................................................................................................................................................................................................................................23200.05100010
..................................ATTGTCTGAACCGGCACCATTGTC---------C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
...........................................................................................................................................................................................................................................................TACTAATTGCTTCGGAACAACATCG...................................................................................................................................................................................................................................................25200.05101000
...............................................................................................................................................................................................................................................................AATTGCTTCGGAACAACATCGGA.................................................................................................................................................................................................................................................23200.05101000
............................................................................................................................................................................................................................................................................CAACATCGGACTCCCCTGCTACAA...................................................................................................................................................................................................................................24200.05100010
..................................................................................................................GACTCCTCGCAGATCGAGTC.................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
..............................................................................................................................................................................................................................................CTCAGTCGTTC--TACTAATTGCT.................................................................................................................................................................................................................................................................22200.05101000
................................GAATTGTCTGAACCGGCACCATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
...................................................................................................................................................................................................................................................................GCTTCGGAACAACATCGGACTCCCC...........................................................................................................................................................................................................................................25200.05101000
..............................................................................................................................................................................................................................................CTCAGTCGTTC--TACTAATTGCTTCGGAA...........................................................................................................................................................................................................................................................28200.05101000
.......................................................................................................................................................................CATCTGGGTGTTAAGGGGT.............................................................................................................................................................................................................................................................................................................................................19200.05100100
......................................................................................................................................................................................................................................................................TCGGAACAACATCGGACTCCC............................................................................................................................................................................................................................................21200.05101000
............................................................................................................................................................................................................................................................ACTAATTGCTTCGGAACAACATCGG..................................................................................................................................................................................................................................................25200.05101000
...............................TGAATTGTCTGAACCGGCACCATTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
...............................................................................................................................................................................................................................................................AATTGCTTCGGAACAACATCGGACTCCC............................................................................................................................................................................................................................................28200.05101000
..........................................................................................................................................................................................................................................................................................................................................................................CTACGAGGGACTTCTACTACTGC......................................................................................................................................23200.05101000
..................................ATTGTCTGAACCGGCACCATTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
......................................................TGTC---------CCCAGCTCCA-----------------------------------GTGACTCCTCGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................28200.05101000
..................................................................................................................................................................................................................................................................TGCTTCGGAACAACATCGGACTCCCCT..........................................................................................................................................................................................................................................27200.05101000
......................................................................................................................................................................................................................TGCACT-----------------TCTCAGTCGTTC--TACTA.......................................................................................................................................................................................................................................................................23200.05101000
............................................................................................................................................................................................................................................................................CAACATCGGACTCCCCTGCTAC.....................................................................................................................................................................................................................................22200.05101000
.....................................................................................................................................................................................................................................................................................................................................................................TACAACTACGAGGGACTTCTACTACTG.......................................................................................................................................27200.05100010
.........................................................................................................................................................................................................................................................................................................................................................................ACTACGAGGGACTTCTACTACTGC......................................................................................................................................24200.05100010
..................................................................................................................................................................................TAAGGGGTGTTATGTATGTGA................................................................................................................................................................................................................................................................................................................................21200.05100001
......................................................................................................................................................................................................................................................TTC--TACTAATTGCTTCGGAA...........................................................................................................................................................................................................................................................20200.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................G--GGATTACTACT-------------ACAACTACGAGG.......................................24200.05101000
.......................................................................................................................................GAAAAGACAACCCCCGGAATTCTT........................................................................................................................................................................................................................................................................................................................................................................24200.05100010
..................................................................................................................................................................................................................................................................TGCTTCGGAACAACATCGGACTCCCCTGC........................................................................................................................................................................................................................................29200.05101000
...C----------------CGACTGT--CCTGAATTGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000
droVir3
CTAC----------------AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---ACAACTACAACTACA---------------ACTACAACTA----------C---------AACTACAACTAC------AAC----TACAA------------CTACAACTACAACTA---CAACTA------C------AACTA------CGACTACAACT-------------ACAGCTACAAGCT-------ACAACTACAACTACGACT------------ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
ATAG----------------TACTCTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACTACTATTATTATTACT---------------ACTACTACTA---C-TACTACTA---------------------GTATTAC----TACTG------------CTACTACTACTACTA---CTACTA------CTACTACTATTATTATTTTTACTACTACT-ACTACTACTACT--------------------ACTACTATTACTACTACT------------ASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CTAC----------------TAATTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTGA-------------------CTACTACTACTA-----TTAACT---------------ACTACAACTATTGTTG---------AC---TACTACAACTAGTAACTACTT---------------------CTGCTACTACTACTACTACAA---------T------TGCTAATTA--CGATTACTACTAAA------T---ACTACTACTA----------ACTACTACTACTAACACT-----------ATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droPer2
ACTA----------------CTTCTGAAACTACTTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT---------------------GTGTTTCCCACTACTGCAACTACTACTA------------------------------C------TTCTACTGT--CTACTTCTACT-------------ACTACTA-----------------CTACTTCTACTACTATCCTCAAAACAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CTAC----------------TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---ACTA---TAGGTACT---------ACTACTACTACTACTA----------TAGGTACTACTACTACTACTACTCGGTACTA---------------------------CTA---------CTACTACTACTAC------TACTACTCG--GTACTACTACT-------------ACTACTT-TAGGTTCC----ACTACTAATATAGCGACT------------GSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
ACCC----------------CATCTCAAGCGGTAGCTGGCG------------------GATCCACAACTCCAGCTGGGCCACAGCGTTCGCCTGAGCCAAACGGGACTGGGGGACCGCCACGCAGATCGGCCCGTGACCGTCGCCGCCCACAGTTCTACGAC---CCGTCTGGGTGTTAAGGGGTGTTATGTATGCGAC--------------TGCATTCTCTCGCGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGATCTCGTTCGACTG------------ASizeHit CountTotal NormTotal
No Reads
droKik1
CTAC----------------AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---AC-------------------------------------------------TT---------------------GCGCTTCTTGCAACTGCAACTACAACTA------------------CAACTACAACTAC-------------------------------AACTACAACT--------------------ACAACTACAACTACAACT------------ASizeHit CountTotal NormTotal
No Reads
droFic1
CCGC----------------GC------------------------------------------------------------------------------------------------------AGATCGGCCGTTGACCGTCGCCGCCCGCAGTTCTACGAT---CCATCTGGGTGTTAAGGGGTGTTATGTATGCGAC--------------TGCATTATCTCGCGAAGTGATCTCGTCAGTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCACTA------------ASizeHit CountTotal NormTotal
No Reads
droEle1
TCGC----------------CGACAGTGAGCAGCGCTGTAA------------------GCACAGGCGTTATCTTTGG--A------------------------------AGAAAAACAAGACAGATCCAGGCGACAGCAACAACCCGCACAAAACTATTAC---GCATCTTTGTGTTAAGAGGTGTGGTGCATGCGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAGTCTC------------TSizeHit CountTotal NormTotal
No Reads
droRho1
TCGT----------------AGG--------------------------------------------------------------------------------------------------------TCACATCGACACAGGAAGCCTACGGAATTCTATAGTTCCTCAACTGGGTGTTAAGGGGTGTTATGTATTTGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGACCC------------ASizeHit CountTotal NormTotal
No Reads
droBia1
ACAACATGCGCCCCAGCCACTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT---ACT---ACAACAACCACTGAGGCTCCAACCACGACTACAA---C-A---------ACATGTACGCCAACTACAA-------------------------------------CGACTACCACAACTACGACTAC------CACAACTAA--CGACTACTACA-------------ACAACTA-------CGACAACGTGCG-CCCCAGCAACT------------ASizeHit CountTotal NormTotal
No Reads
droTak1
CTGA----------------CCTACGCGA--------------ACCACCACCGTCATCTGCTCTGGCCTTAAATTCA-----------------------------------CCGGATCTACGCCGATCAAGTCGTCATAGAGTGGCGACACAATTTTACCAA---TCATCCGGGTGTTAAGGGGTGTTGTGTATGCCAGCAGCATATACACACTGCATT-----------------CGCCAGTCACACGTCAGCAGTCAACGGAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAC--------------------GTCGATCTCACAAGTCAC------------ASizeHit CountTotal NormTotal
No Reads
droEug1
TAC-----------------TA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTACTACTA-----CATACT---------TTTACTACTACTACTA---CAT---------ACTTTTACTACTACTACTACATACTT---------------------------TTA---------CTACTACTACTACCACTACTACTACTACTCTTATTACTACT-------------T-------------CTACTACATA---CTTTTACTACT------------ASizeHit CountTotal NormTotal
No Reads
dm3
ACTA----------------CTACTACTACTACTACTACTA------------------CTACTACTACTACTACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTACTACTACTAC-------------------------------TACTACTACT--------------------ACTACTACTACTACTACT------------ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTACTACT--------------------ACTACTACTACTACTAC..............27202.9559000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003602300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TACTACTACTACTACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC.............................................................................................................................27202.4549000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003600011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TACTACTACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTAC.....................................................................................................27202.3547000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003600011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................TACTACTACTACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------C........................................................................................................27202.3547000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003600011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TA----------------CTACTACTACTACTACTACTA------------------CT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................25201.953900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTACTACTAC...............................................................................................27201.803600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTACTACTACTAC-------------------------------TAC..........................................................27201.803600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAC-------------------------------TACTACTACT--------------------ACTACTACTAC....................27201.803600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TACTA------------------CTACTACTACTAC-------------------------------TACTACTAC....................................................27201.803600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TACTACTACTAC-------------------------------TACTACTACT--------------------ACTAC..........................27201.803600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TAC-------------------------------TACTACTACT--------------------ACTACTACTACTAC.................27201.803600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTACTACTACTAC-------------------------------.............................................................27201.803600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TACTACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTACTAC..................................................................................................27201.803600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TA------------------CTACTACTACTAC-------------------------------TACTACTACT--------------------AC.............................27201.803600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TACTACTAC-------------------------------TACTACTACT--------------------ACTACTAC.......................27201.803600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................TAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTACTACTACTAC-------------------------------TACTAC.......................................................27201.803600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTACTACTACTAC-------------------------------T............................................................25201.603200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................TACTACTACTACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACT............................................................................................................................25201.603200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................TAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTACTACTACTAC-------------------------------TACT.........................................................25201.603200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TACTA------------------CTACTACTACTAC-------------------------------TACTACT......................................................25201.603200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................TACTACTACTACTACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T...............................................................................................................................25201.603200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TACTACTACTACTACTA------------------CTACTACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................25201.603200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TACTACTACTACTA------------------CTACTACTACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................25201.603200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TA------------------CTACTACTACTACTACTAC--T------------------------------ACT.....................................................................................................................................................................................................................................................................................................................................................................................................................25201.603200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TA------------------CTACTACTACTAC-------------------------------TACTACTACT--------------------...............................25201.603200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTACTACTACT..............................................................................................25201.603200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTACTACT.................................................................................................25201.603200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................TACTACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTACT....................................................................................................25201.603200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TACTACTA------------------CTACTACTACTACTACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................25201.603200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TACTACTACTACTACTACTA------------------CTACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................25201.603200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TACTA------------------CTACTACTACTACTACTAC--T------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................25201.603200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TACTACTACTA------------------CTACTACTACTACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................25201.603200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TACTACTACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CT.......................................................................................................25201.603200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TA----------------CTACTACTACTACTACTACTA------------------CTAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................27201.202400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACTA----------------CTACTACTACTACTACTACTA------------------C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................26201.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...A----------------CTACTACTACTACTACTACTA------------------CTAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................26201.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ACTACTACTACTACTA------------------CTACTACTAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................26201.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ACTACTACTACTACTACTA------------------CTACTAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................26201.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TACTACTACTACTACTACTA------------------CTAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.951900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TACTACTACTACTACTA------------------CTACTAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.951900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TA----------------CTACTACTACTACTACTACTA------------------C...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.951900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................AC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTACTACTACTAC-------------------------------TACTAC.......................................................26200.801600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................ACTACTACTACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------C........................................................................................................26200.701400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................ACTACTACTACTACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAC.............................................................................................................................26200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................ACTA------------------CTACTACTACTAC-------------------------------TACTACT......................................................24200.65130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060300040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTACTACTACTAC-------------------------------T............................................................24200.65130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060300040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................ACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTACTACT.................................................................................................24200.65130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060300040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................ACTA------------------CTACTACTACTACTACTAC--T------------------------------AC......................................................................................................................................................................................................................................................................................................................................................................................................................26200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................ACTACTACTA------------------CTACTACTACTACTAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................ACTACTACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CT.......................................................................................................24200.65130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060300040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................ACTACTACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTAC.....................................................................................................26200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTACTACTACTAC-------------------------------TAC..........................................................26200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................ACTACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTACTAC..................................................................................................26200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................ACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTACTACTAC...............................................................................................26200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................ACTACTA------------------CTACTACTACTACTACTAC--.......................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................ACTACTACTACTA------------------CTACTACTACTAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................AC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTACTACTACT..............................................................................................24200.65130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060300040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TA------------------CTACTACTACTACTACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------................................................................................................................................27200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................ACTACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTACT....................................................................................................24200.65130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060300040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................A------------------CTACTACTACTACTACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------................................................................................................................................26200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................AC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTACTACTACTAC-------------------------------TACT.........................................................24200.65130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060300040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................AC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACTA------------------CTACTACTACTAC-------------------------------.............................................................26200.651300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................ACTACTACTACTA------------------CTACTACTACT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................ACTACTA------------------CTACTACTACTACTACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................ACTA------------------CTACTACTACTACTACTAC--T------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................24200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................ACTACTACTA------------------CTACTACTACTACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...A----------------CTACTACTACTACTACTACTA------------------CT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TA------------------CTACTACTACTACTACTAC--T------------------------------ACTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T...............................................................................................................................28200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ACTACTACTACTACTACTA------------------CTACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ACTACTACTACTACTA------------------CTACTACT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................A------------------CTACTACTACTACTACTAC--T------------------------------ACT.....................................................................................................................................................................................................................................................................................................................................................................................................................24200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droYak3
CGTA----------------GA---------------------------------------------------------------------------------------------------------TCTCAGCGTAGCAGATGACGTCCGGAAATATACAAC---CCATCCGTGTGTTAAGGAGTTTTGTATGTGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
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Generated: 05/17/2015 at 10:14 PM