ID:

dwi_226

 Coordinate:

scf2_1100000001088:3796-3946 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-35.3 -35.1 -35.1 -35.1

Flybase annnotation

exon [dwil_GLEANR_12640:1]; CDS [Dwil\GK12421-cds]; intron [Dwil\GK12421-in]

Repeatable elements

NameClassFamilyStrand
AY1_DHUnknownUnknown-
mature
  1. scf2_1100000001458:535-562 -
  2. scf2_1100000010675:619-646 -
  3. scf2_1100000003150:6877-6904 -
  4. scf2_1100000008461:608-635 -
  5. dwi_302  scf2_1100000003862:1246-1273 -
  6. scf2_1100000011554:207-234 -
  7. scf2_1100000004521:3028292-3028319 -
  8. scf2_1100000004521:6871886-6871913 -
  9. scf2_1100000004521:8594164-8594191 +
  10. scf2_1100000004577:3869209-3869236 -
  11. scf2_1100000004585:663665-663692 -
  12. scf2_1100000004834:21000-21027 +
  13. scf2_1100000004864:13325-13352 -
  14. scf2_1100000004902:12311844-12311871 -
  15. scf2_1100000004949:1039607-1039634 -
  16. scf2_1100000004961:229852-229879 -
  17. scf2_1100000004963:995397-995424 -
  18. scf2_1100000004963:4166401-4166428 -
  19. dwi_226  scf2_1100000001088:3801-3828 -
  20. scf2_1100000000509:2791-2818 -
  21. scf2_1100000001467:5001-5028 +
  22. scf2_1100000003150:5966-5993 +
  23. scf2_1100000006678:982-1009 +
  24. scf2_1100000004521:3027544-3027571 +
  25. scf2_1100000004521:6870836-6870863 +
  26. scf2_1100000004577:3868146-3868173 +
  27. scf2_1100000004585:659938-659965 +
  28. scf2_1100000004590:1877272-1877299 +
  29. scf2_1100000004748:22991-23018 +
  30. scf2_1100000004949:1038605-1038632 +
  31. scf2_1100000004958:1412093-1412120 +
  32. scf2_1100000004963:994357-994384 +
  33. scf2_1100000004963:1533443-1533470 +
  34. scf2_1100000012694:621-648 +
  35. scf2_1100000009992:963-990 +
  36. scf2_1100000000509:1728-1755 +
star
  1. scf2_1100000001248:12655-12677 -
  2. scf2_1100000013666:810-832 -
  3. scf2_1100000001871:4077-4099 +
  4. dwi_302  scf2_1100000003862:1367-1389 -
  5. scf2_1100000011795:422-444 -
  6. scf2_1100000004586:39636-39658 +
  7. scf2_1100000004655:19675-19697 -
  8. scf2_1100000004869:7081-7103 -
  9. scf2_1100000004952:472271-472293 -
  10. dwi_226  scf2_1100000001088:3922-3944 -
  11. scf2_1100000010229:1253-1275 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCATTAGAGGGCAAGTTACTGCTTTAAGGATAGAGACCCCACAGGTTGAGGTATATCAGAGAGTGACAATTGACCCTAGCGTGAAGTGTGAAGTTAAGTTAGACATTGTAAAGCAGTGTTTGCATTTGCTGCTACATAGCAGCAATTTCAATAAAAATATTGCTCTGCTCCCGCTACTGCTCTGATTTCGAACGGCTACGTAGCATAGCAGAGAGCACAAACGGAAAACGATTGCTCATCTGCTCTGCTCC
****************************************************..........................((.........(((((((((((((.....(((.(((((((((((...((((((((....))))))))...))).....)))))))).))).....)))..))).))))))).....))******************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body		 V119
head
 M020
head
........................TAAGGATAGAGACCCCACAGGTT............................................................................................................................................................................................................ 23 0 12 0.17 2 1 1 0 0 0
.......................................................................................................................................................................................................................CACAAACGGAAAACGATTGCTCATC........... 25 0 19 0.16 3 3 0 0 0 0
.....................................................................................................................................................................................CTGATTTCGAACGGCTACGTAGCAT............................................. 25 0 20 0.15 3 3 0 0 0 0
.......................................................................................................................................................................................................................CACAAACGGAAAACGATTGCTCATCTG......... 27 0 19 0.11 2 2 0 0 0 0
.....................................................................................................................................................................................CTGATTTCGAACGGCTACGTA................................................. 21 0 20 0.10 2 2 0 0 0 0
.................................AGACCCCACAGGTTGAGGTATATCAGAG.............................................................................................................................................................................................. 28 0 10 0.10 1 1 0 0 0 0
........................................................................................................................................................................TCCCGCTACTGCTCTGATTTCGAACGGC....................................................... 28 0 20 0.10 2 0 1 0 0 1
.............................................................................................................................................................................................................TAGCAGAGAGCACAAACGGAAAACGAT................... 27 0 20 0.10 2 2 0 0 0 0
................................................................GACCGTTGACCCTAGCGTT........................................................................................................................................................................ 19 3 10 0.10 1 0 0 0 1 0
...............................................................AGACCGTTGACCCTAGCGT......................................................................................................................................................................... 19 3 10 0.10 1 1 0 0 0 0
....................................................ATATCAGAGAGTGACAATTGACC................................................................................................................................................................................ 23 0 11 0.09 1 0 1 0 0 0
..........................AGGATAGAGACCCCACAGGTTGAGG........................................................................................................................................................................................................ 25 0 11 0.09 1 1 0 0 0 0
................................................AGGTATATCAGAGAGTGACAATTG................................................................................................................................................................................... 24 0 11 0.09 1 1 0 0 0 0
................TACTGCTTTAAGGATAGAGACCCCA.................................................................................................................................................................................................................. 25 0 11 0.09 1 1 0 0 0 0
....................GCTTTAAGGATAGAGACCCCACAGGT............................................................................................................................................................................................................. 26 0 11 0.09 1 0 0 1 0 0
....................GCTTTAAGGATAGAGACCCCACAGG.............................................................................................................................................................................................................. 25 0 11 0.09 1 1 0 0 0 0
................................................AGGTATATCAGAGAGTGACAATTGA.................................................................................................................................................................................. 25 0 11 0.09 1 0 0 1 0 0
................TACTGCTTTAAGGATAGAGACCCC................................................................................................................................................................................................................... 24 0 11 0.09 1 0 0 1 0 0
......................TTTAAGGATAGAGACCCCACAGGT............................................................................................................................................................................................................. 24 0 12 0.08 1 1 0 0 0 0
.....................................................................................GTGTGAAGTTAAGTTAGACATTGTAA............................................................................................................................................ 26 0 12 0.08 1 1 0 0 0 0
........................TAAGGATAGAGACCCCACAGGTTGA.......................................................................................................................................................................................................... 25 0 12 0.08 1 0 1 0 0 0
........................TAAGGATAGAGAGCCCACAGGT............................................................................................................................................................................................................. 22 1 12 0.08 1 0 0 1 0 0
......................TTTAAGGATAGAGACCCCACAGG.............................................................................................................................................................................................................. 23 0 12 0.08 1 1 0 0 0 0
.................................................................................TGAAGTGTGAAGTTAAGTTAGACATT................................................................................................................................................ 26 0 12 0.08 1 1 0 0 0 0
......................TTTAAGGATAGAGACCCCACAGGTTG........................................................................................................................................................................................................... 26 0 12 0.08 1 1 0 0 0 0
.........................................................AGAGAGTGACAATTGACCCTAG............................................................................................................................................................................ 22 0 13 0.08 1 1 0 0 0 0
...TTAGAGGGCAAGTTACTGCTTTAA................................................................................................................................................................................................................................ 24 0 14 0.07 1 1 0 0 0 0
................................................................................................AGTTTGACATTGTGAAGC......................................................................................................................................... 18 2 15 0.07 1 0 1 0 0 0
..........................................................................................................................................................................................................................AAACGGAAAACGATTGCTCATCTGC........ 25 0 19 0.05 1 1 0 0 0 0
........................................................................................................................................................................................................................ACAAACGGAAAACGATTGCTCATCT.......... 25 0 19 0.05 1 1 0 0 0 0
..........................................................................................................................................................................................................................AAACGGAAAACGATTGCTCATCTG......... 24 0 19 0.05 1 1 0 0 0 0
.............................................................................................................................................................................................................................CGGAAAACGATTGCTCATCTGCTC...... 24 0 19 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................................................GGAAAACGATTGCTCATCTGC........ 21 0 19 0.05 1 0 0 0 0 1
.........................................................................................................................................................................................................................CAAACGGAAAACGATTGCTCATCTGC........ 26 0 19 0.05 1 1 0 0 0 0
........................................................................................................................................................................................................................ACAAACGGAAAACGATTGCTCATC........... 24 0 19 0.05 1 1 0 0 0 0
..........................................................................GATAGCGTGCAGTGTGAAG.............................................................................................................................................................. 19 3 19 0.05 1 0 0 1 0 0
.................ACGGCTTTAAGGATACAG........................................................................................................................................................................................................................ 18 2 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................CTGATTTCGAACGGCTACGTAGCA.............................................. 24 0 20 0.05 1 0 1 0 0 0
.............................................................................................................................................................................CTACTGCTCTGATTTCTAACGG........................................................ 22 1 20 0.05 1 0 0 0 1 0
......................................................................................................................................................................................................CGTAGCATAGCAGAGAGCATT................................ 21 2 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................TCGGATGTGGAACGGCTAC.................................................... 19 3 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................................................CACAAACGGAAAACGATTGCTCATCTTA........ 28 2 20 0.05 1 0 1 0 0 0
.......................................................................................................................TTGCATTTGCTGCTACATAGCAGCAA.......................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................................CTCTGATTTCGAACGGCTACGTAGCA.............................................. 26 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................ACTGCTCTGATTTCGAACGGCTACGT.................................................. 26 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................TCGAACGGATACGTAGCATAGCAGAG...................................... 26 1 20 0.05 1 0 1 0 0 0
....................................................................................................................................................................................TCTGATTTCGAACGGCTACGT.................................................. 21 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................TACATAGCAGCAATTCCAATAAAAATAT........................................................................................... 28 1 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................................................................................AAACGGAAAACGACTGCTCATCTGCTC...... 27 1 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................................................................TAGCAGAGAGCACAAACGGAAA........................ 22 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................CTACATAGCAGCAATTCCAATAAAAATAT........................................................................................... 29 1 20 0.05 1 1 0 0 0 0
....................................................................................................................................TACATAGCAGCAATTTCAATAAAAATAT........................................................................................... 28 0 20 0.05 1 0 1 0 0 0
.....................................................................................................................................................................................CTGATTTCGAGCGGCTGCGTGGC............................................... 23 3 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................AAACATTGCTCTGCTACCA.............................................................................. 19 3 20 0.05 1 0 0 0 1 0
........................................................................................................................................................................................ATTTCGAACGGCTACGTAGCA.............................................. 21 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................CTACATAGCAGCAATTTCAATAAAAAA............................................................................................. 27 1 20 0.05 1 0 1 0 0 0
................................................................................................................................................................TGCTCTGCTCCCGCTACTGCTCTGAT................................................................. 26 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................................TGCTCTGCTCCCGCTACTGCTCTGA.................................................................. 25 0 20 0.05 1 0 1 0 0 0
..............................................................................................................................................................................TACTGCTCTGATTTCGAACGGCTACG................................................... 26 0 20 0.05 1 0 0 1 0 0
...................................................................................................................................................................................................................................ACGATTGCTCATCTGCTCTGCTCC 24 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................................CTACTGCTCTGATTTCTCACGG........................................................ 22 2 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

GGTAATCTCCCGTTCAATGACGAAATTCCTATCTCTGGGGTGTCCAACTCCATATAGTCTCTCACTGTTAACTGGGATCGCACTTCACACTTCAATTCAATCTGTAACATTTCGTCACAAACGTAAACGACGATGTATCGTCGTTAAAGTTATTTTTATAACGAGACGAGGGCGATGACGAGACTAAAGCTTGCCGATGCATCGTATCGTCTCTCGTGTTTGCCTTTTGCTAACGAGTAGACGAGACGAGG
*******************************************************..........................((.........(((((((((((((.....(((.(((((((((((...((((((((....))))))))...))).....)))))))).))).....)))..))).))))))).....))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V119
head
 V117
male body		 M020
head
..........................................................................................................................................................................................................CGTATCGTCTCTCGTGTTTGCCTT......................... 24 0 20 10.40 208 208 0 0 0 0
.........................................GTCCAACTCCATATAGTCTCTCACTGT....................................................................................................................................................................................... 27 0 11 3.73 41 41 0 0 0 0
......................................................................................................................................................................................................GCATCGTATCGTCTCTCGTGTTTGCC........................... 26 0 20 1.80 36 35 0 0 0 1
....................................................................................TCACACTTCAATTCAATCTGTAACAT............................................................................................................................................. 26 0 12 1.42 17 16 1 0 0 0
........................................................................................................................................................................................................ATCGTATCGTCTCTCGTGTTTGCCT.......................... 25 0 20 1.30 26 26 0 0 0 0
.....................................................ATAGTCTCTCACTGTTAACTGGGAT............................................................................................................................................................................. 25 0 11 0.82 9 4 5 0 0 0
................................................................................................................................................................................GACGAGACTAAAGCTTGCCGATGCAT................................................. 26 0 20 0.80 16 5 11 0 0 0
....................................GGGGTGTCCAACTCCATATAGTCTCT............................................................................................................................................................................................. 26 0 10 0.80 8 8 0 0 0 0
.......................................................................................................................................................................GAGGGCGATGACGAGACTAAAGCTT........................................................... 25 0 20 0.75 15 0 15 0 0 0
......................................................................................................................................................................................................GCATCGTATCGTCTCTCGTGTTTGCCT.......................... 27 0 20 0.75 15 0 15 0 0 0
.....................................................................................................................................................................ACGAGGGCGATGACGAGACTAAAGCT............................................................ 26 0 20 0.70 14 0 14 0 0 0
...........................................................................................................................................................................................................GTATCGTCTCTCGTGTTTGCCTT......................... 23 0 20 0.65 13 13 0 0 0 0
......................................................................................................................................................................CGAGGGCGATGACGAGACTAAAGCT............................................................ 25 0 20 0.65 13 0 13 0 0 0
................................................TCCATATAGTCTCTCACTGTTAACT.................................................................................................................................................................................. 25 0 11 0.64 7 7 0 0 0 0
.......................................................................................................................................................................................................CATCGTATCGTCTCTCGTGTTTGCCTT......................... 27 0 20 0.55 11 11 0 0 0 0
...........................................CCAACTCCATATAGTCTCTCACTGT....................................................................................................................................................................................... 25 0 11 0.55 6 6 0 0 0 0
........CCCGTTCAATGACGAAATTCCTATCTCT....................................................................................................................................................................................................................... 28 0 14 0.50 7 7 0 0 0 0
...........................................CCAACTCCATATAGTCTCTCACTGTTAAC................................................................................................................................................................................... 29 0 11 0.45 5 5 0 0 0 0
..........................................TCCAACTCCATATAGTCTCTCACTGT....................................................................................................................................................................................... 26 0 11 0.45 5 5 0 0 0 0
.......................................................................................................................................................................................................CATCGTATCGTCTCTCGTGTTTGCCT.......................... 26 0 20 0.45 9 0 9 0 0 0
....................................................................................................................................................................GACGAGGGCGATGACGAGACTAAAGCT............................................................ 27 0 20 0.40 8 8 0 0 0 0
......................................................................................................................................GTATCGTCGTTAAAGTTATTTTTAT............................................................................................ 25 0 20 0.40 8 0 8 0 0 0
.........................................GTCCAACTCCATATAGTCTCTCACT......................................................................................................................................................................................... 25 0 11 0.36 4 4 0 0 0 0
...AATCTCCCGTTCAATGACGAAATTCCT............................................................................................................................................................................................................................. 27 0 14 0.36 5 5 0 0 0 0
........................................................................................................................................................................................................ATCGTATCGTCTCTCGTGTTTGCCTT......................... 26 0 20 0.35 7 0 0 0 0 7
..................................................................................................................................................................................CGTGACTAAAGCTTACCGAT..................................................... 20 2 20 0.35 7 0 0 7 0 0
...................................................................................TTCACACTTCAATTCAATCTGTAACAT............................................................................................................................................. 27 0 12 0.33 4 4 0 0 0 0
...........................................................................GGCCGCACTTCACACGTCAA............................................................................................................................................................ 20 3 3 0.33 1 0 1 0 0 0
......................................................................................................................................................................CGAGGGCGATGACGAGACTAAAGCTT........................................................... 26 0 20 0.30 6 0 6 0 0 0
..................................................................................................................................................................GAGACGAGGGCGATGACGAGACT.................................................................. 23 0 20 0.30 6 1 5 0 0 0
..........................................................................................................................................................................................................CGTATCGTCTCTCGTGTTTGCCT.......................... 23 0 20 0.30 6 0 6 0 0 0
...........................................................................................................................................................................................................GTATCGTCTCTCGTGTTTGCCTTTT....................... 25 0 20 0.30 6 6 0 0 0 0
......CTCCCGTTCAATGACGAAATTCCTAT........................................................................................................................................................................................................................... 26 0 14 0.29 4 4 0 0 0 0
......CTCCCGTTCAATGACGAAATTCCTATCT......................................................................................................................................................................................................................... 28 0 14 0.29 4 4 0 0 0 0
..........................TCCTATCTCTGGGGTGTCCAACTCCAT...................................................................................................................................................................................................... 27 0 11 0.27 3 3 0 0 0 0
.............TCAATGACGAAATTCCTATCTCTGGGGT.................................................................................................................................................................................................................. 28 0 11 0.27 3 3 0 0 0 0
..............................................................................................................................................................................................................TCGTCTCTCGTGTTTGCCTTTTGCT.................... 25 0 20 0.25 5 5 0 0 0 0
...................................................................................................................................................................................GTGACTAAAGCTTACCGAT..................................................... 19 2 20 0.25 5 0 0 5 0 0
.......TCCCGTTCAATGACGAAATTCCTATCT......................................................................................................................................................................................................................... 27 0 14 0.21 3 3 0 0 0 0
...............................................................................................................................................................................................................CGTCTCTCGTGTTTGCCTTTTGCTAAC................. 27 0 20 0.20 4 4 0 0 0 0
...................................TGGGGTGTCCAACTCCATATAGTCTC.............................................................................................................................................................................................. 26 0 10 0.20 2 0 2 0 0 0
........................................................................................................................................................................................................ATCGTATCGTCTCTCGTGTTTGCC........................... 24 0 20 0.20 4 4 0 0 0 0
.............................................................................................................................................................................GATGACGAGACTAAAGCTTGCCGAT..................................................... 25 0 20 0.20 4 4 0 0 0 0
..................................CTGGGGTGTCCAACTCCATATAGTCTCT............................................................................................................................................................................................. 28 0 10 0.20 2 2 0 0 0 0
....................................GGGGTGTCCAACTCCATATAGTCTC.............................................................................................................................................................................................. 25 0 10 0.20 2 2 0 0 0 0
.................................................CCATATAGTCTCTCACTGTTAACT.................................................................................................................................................................................. 24 0 11 0.18 2 2 0 0 0 0
..................GACGAAATTCCTATCTCTGGGGTGT................................................................................................................................................................................................................ 25 0 11 0.18 2 2 0 0 0 0
.........................................GTCCAACTCCATATAGTCTCTCACTG........................................................................................................................................................................................ 26 0 11 0.18 2 2 0 0 0 0
......................................GGTGTCCAACTCCATATAGTCTCTCACT......................................................................................................................................................................................... 28 0 11 0.18 2 2 0 0 0 0
....................................................................................TCACACTTCAATTCAATCTGTAACATTT........................................................................................................................................... 28 0 11 0.18 2 2 0 0 0 0
...............................................CTCCATATAGTCTCTCACTGT....................................................................................................................................................................................... 21 0 11 0.18 2 2 0 0 0 0
....................................................................................TCACACTTCAATTCAATCTGTAACA.............................................................................................................................................. 25 0 12 0.17 2 2 0 0 0 0
...................................................................................TTCACACTTCAATTCAATCTGTAACATT............................................................................................................................................ 28 0 12 0.17 2 2 0 0 0 0
........................ATTCCTATCTCTGGGGTGTCCAACT.......................................................................................................................................................................................................... 25 0 12 0.17 2 2 0 0 0 0
.................................................................................................................................................................CGAGACGAGGGCGATGACGAGACT.................................................................. 24 0 20 0.15 3 1 2 0 0 0
...................................................................................................................................................................AGACGAGGGCGATGACGAGACT.................................................................. 22 0 20 0.15 3 3 0 0 0 0
.................................................CCATATAGTCTCTCACTGTTAACTGGGAT............................................................................................................................................................................. 29 0 9 0.11 1 1 0 0 0 0
.........................................................................................................................................................................................................................GTTTGCCTTTTGCTAACGAGT............. 21 0 19 0.11 2 0 0 0 0 2
.........................................................................................................................................................................................................................GTTTGCCTTTTGCTAACGAGTAGA.......... 24 0 19 0.11 2 0 2 0 0 0
............................................................................................................................................................................................................TATCGTCTCTCGTGTTTGCCTTTTGC..................... 26 0 20 0.10 2 0 2 0 0 0
..................................................................................................................................................................................................................CTCTCGTGTTTGCCTTTTGCT.................... 21 0 20 0.10 2 2 0 0 0 0
................................................................................................................................................TAAAGTTATTTTTATAACGAGACGA.................................................................................. 25 0 20 0.10 2 0 1 1 0 0
....................................GGGGTGTCCAACTCCATATAGTCT............................................................................................................................................................................................... 24 0 10 0.10 1 1 0 0 0 0
.......................................................................................................................................................................GAGGGCGATGACGAGACTAAAGCT............................................................ 24 0 20 0.10 2 0 0 0 2 0
.................................................................................................................................................................................................................................TTTGCTAACGAGTAGACGAGACGAG. 25 0 20 0.10 2 2 0 0 0 0
...................................................................................................................................................................................................................................TGCTAACGAGTAGACGAGACGAG. 23 0 20 0.10 2 0 2 0 0 0
................................CTCTGGGGTGTCCAACTCCATATAGTCTT.............................................................................................................................................................................................. 29 1 10 0.10 1 1 0 0 0 0
................................................................................................................................................................ACGAGACGAGGGCGATGACGAGACT.................................................................. 25 0 20 0.10 2 0 2 0 0 0
...................................................................................................................................................................AGACGAGGGCGATGACGAGAC................................................................... 21 0 20 0.10 2 2 0 0 0 0
................................................................................................................................................................................................................GTCTCTCGTGTTTGCCTTTTGCTAAC................. 26 0 20 0.10 2 0 2 0 0 0
....................................GGGGTGTCCAACTCCATATAGTCTCTC............................................................................................................................................................................................ 27 0 10 0.10 1 1 0 0 0 0
...............................................................................................................................................................................................TGCCGATGCATCGTATCGTCTCTCGTGT................................ 28 0 20 0.10 2 0 1 0 1 0
...................................................................................................................................................................ATACGAGGGCGATGACGAGACTAAAGCT............................................................ 28 1 20 0.10 2 2 0 0 0 0
..........................................................................................................................................................................GGCGATGACGAGACTAAAGCTTGCCGAT..................................................... 28 0 20 0.10 2 0 2 0 0 0
.......................................................................................................................................................GTTTTTATAACGAGACGAGGGCGAT........................................................................... 25 1 20 0.10 2 0 2 0 0 0
..........................................................................................................................................................................GGCGATGACGAGACTAAAGCTTGCCGA...................................................... 27 0 20 0.10 2 2 0 0 0 0
...................................TGGGGTGTCCAACTCCATATAGTCTCT............................................................................................................................................................................................. 27 0 10 0.10 1 1 0 0 0 0
......................................................................................................................................................................CGAGGGCGATGACGAGGCTGAA............................................................... 22 2 20 0.10 2 0 0 0 2 0
....................................................................................................................................................................GACGAGGGCGATGACGAGACTAAAGC............................................................. 26 0 20 0.10 2 2 0 0 0 0
........................................................................................................................ACGTAAACGACGATGTATCGT.............................................................................................................. 21 0 20 0.10 2 2 0 0 0 0
........................................................................................................................................................................AGGGCGATGACGAGACTAAAGCTTGC......................................................... 26 0 20 0.10 2 1 1 0 0 0
.....................................GGGTGTCCAACTCCATATAGT................................................................................................................................................................................................. 21 0 11 0.09 1 1 0 0 0 0
..............................ATCTCTGGGGTGTCCAACTCCATATA................................................................................................................................................................................................... 26 0 11 0.09 1 1 0 0 0 0
...................ACGAAATTCCTATATCTGGGGTGT................................................................................................................................................................................................................ 24 1 11 0.09 1 0 1 0 0 0
.........................TTCCTATCTCTGGGGTGTCCAACTCCAT...................................................................................................................................................................................................... 28 0 11 0.09 1 1 0 0 0 0
..........................TCCTATCTCTGGGGTGTCCAACTCCATAT.................................................................................................................................................................................................... 29 0 11 0.09 1 1 0 0 0 0
.................................................CCATATAGTCTCTCACTGTTAAC................................................................................................................................................................................... 23 0 11 0.09 1 1 0 0 0 0
..........................TCCTATCTCTGGGGTGTCCAACTCC........................................................................................................................................................................................................ 25 0 11 0.09 1 1 0 0 0 0
.......................................GTGTCCAACTCCACATAGTCTCTCACTGT....................................................................................................................................................................................... 29 1 11 0.09 1 1 0 0 0 0
.....................................................ATAGTATCTCACTGTTAACTGGG............................................................................................................................................................................... 23 1 11 0.09 1 0 1 0 0 0
........................................TGTCCAACTCCATATAGTCTCTCACTGT....................................................................................................................................................................................... 28 0 11 0.09 1 1 0 0 0 0
.....................................................ATAGTCTCTCACTGTTAACTGGGA.............................................................................................................................................................................. 24 0 11 0.09 1 1 0 0 0 0
........................................TGTCCAACTCCATATAGTCTCTCACT......................................................................................................................................................................................... 26 0 11 0.09 1 1 0 0 0 0
..............................................ACTCCATATAGTCTCTCACTGTTAACT.................................................................................................................................................................................. 27 0 11 0.09 1 1 0 0 0 0
.........................................GTCCAACTCCATATAGTCTCTCACTCT....................................................................................................................................................................................... 27 1 11 0.09 1 1 0 0 0 0
.............TCAATGACGAAATTCCTATCTCTGGGG................................................................................................................................................................................................................... 27 0 11 0.09 1 1 0 0 0 0
............................................CAACTCCATATAGTCTCTCACTGTT...................................................................................................................................................................................... 25 0 11 0.09 1 1 0 0 0 0
...............................TCTCTGGGGTGTCCAACTCCATAT.................................................................................................................................................................................................... 24 0 11 0.09 1 1 0 0 0 0
...........................CCTATCTCTGGGGTGTCCAACTCCAT...................................................................................................................................................................................................... 26 0 11 0.09 1 1 0 0 0 0
.........................................GTCCAACTCCATATAGTCTCTCACTGTT...................................................................................................................................................................................... 28 0 11 0.09 1 1 0 0 0 0
..............................ATCTCTGGGGTGTCCAACTCCATA..................................................................................................................................................................................................... 24 0 11 0.09 1 1 0 0 0 0
..................................................................GTTAACTGGGATCTCACTTCACACTT............................................................................................................................................................... 26 1 12 0.08 1 1 0 0 0 0
..........................TCCTATCTCTGGGGTGTCCAAC........................................................................................................................................................................................................... 22 0 12 0.08 1 1 0 0 0 0
....................................................................................TCACACTTCAATTCAATCTGTAACATT............................................................................................................................................ 27 0 12 0.08 1 1 0 0 0 0
.....................................................................................CACACTTCAATTCAATCTGTAACAT............................................................................................................................................. 25 0 12 0.08 1 1 0 0 0 0
...................................................................................TTCACACTTCAATCCAATCTGTAACATT............................................................................................................................................ 28 1 12 0.08 1 1 0 0 0 0
..........................TCCTATCTCTGGTGTGTCCAACTC......................................................................................................................................................................................................... 24 1 12 0.08 1 1 0 0 0 0
............................CTATCTCTGGGGTGTCCAACT.......................................................................................................................................................................................................... 21 0 12 0.08 1 1 0 0 0 0
................................................................................CACTTCACACTTCAATTCAATCTGT.................................................................................................................................................. 25 0 12 0.08 1 1 0 0 0 0
GGTAATCTCCCGTTCAATGACGAAA.................................................................................................................................................................................................................................. 25 0 14 0.07 1 1 0 0 0 0
......CTCCCGTTCAATGACGAAATTCCTATC.......................................................................................................................................................................................................................... 27 0 14 0.07 1 1 0 0 0 0
.........CCGTTCAATGACGAAATTC............................................................................................................................................................................................................................... 19 0 14 0.07 1 1 0 0 0 0
....ATCTCCCGTTCAATGACGAAATTCCTAT........................................................................................................................................................................................................................... 28 0 14 0.07 1 1 0 0 0 0
........CCCGTTCAATGACGAAATTCCTATCTC........................................................................................................................................................................................................................ 27 0 14 0.07 1 1 0 0 0 0
GGTAATCTCCCGTTCAATGACGAAAT................................................................................................................................................................................................................................. 26 0 14 0.07 1 1 0 0 0 0
........CCCGTTCAATGACGAAATTCCTATCT......................................................................................................................................................................................................................... 26 0 14 0.07 1 1 0 0 0 0
.......TCCCGTTCAATGACGAAATTCCTATCTC........................................................................................................................................................................................................................ 28 0 14 0.07 1 1 0 0 0 0
...AATCTCCCGTTCAATGACGAAATTCC.............................................................................................................................................................................................................................. 26 0 14 0.07 1 1 0 0 0 0
.......TCCCGTTCAATGACGAAATTCCTATCTCT....................................................................................................................................................................................................................... 29 0 14 0.07 1 1 0 0 0 0
.............TCAATGACGAAATTCCTATCTCT....................................................................................................................................................................................................................... 23 0 16 0.06 1 1 0 0 0 0
..............................................................................................................................................................................................................................CCTTTTGCTAACGAGTAGACGAGAC.... 25 0 19 0.05 1 1 0 0 0 0
............................................................................................................................................................................................................................TGCCTTTTGCTAACGAGTAGACGAGAC.... 27 0 19 0.05 1 1 0 0 0 0
......................................................................................................................................................................................................................CGTGTTTGCCTTTTGCTAACGAGTAG........... 26 0 19 0.05 1 0 1 0 0 0
..........................................................................................................................................................................................................CGTATCGGCTCTCGTGTTTGCCTT......................... 24 1 20 0.05 1 1 0 0 0 0
......................................................................................................................................................TATTTTTATAACGAGACGAGGGCGA............................................................................ 25 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................ACGAGGGCGATGACGAGACTA................................................................. 21 0 20 0.05 1 0 0 0 1 0
................................................................................................................................................................................................GCCGATGCATCGTATCGTCTCTCGTGT................................ 27 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................................................................CGTATCGTCTCTCGTGTTTGCCTTT........................ 25 0 20 0.05 1 0 0 0 1 0
....................................................................................................................ACAAACGTAAACGACGATGTATCGT.............................................................................................................. 25 0 20 0.05 1 0 1 0 0 0
........................................................................................................................................................................AGGGCGATGACGCGACTAAAGCTT........................................................... 24 1 20 0.05 1 1 0 0 0 0
...................................................................................................................................GATGTATCGTCGTTAAAGTTATTT................................................................................................ 24 0 20 0.05 1 0 1 0 0 0
..............................................................................................................................................................................................TTGCCGGTGCGTCGTGTCGTC........................................ 21 3 20 0.05 1 0 0 1 0 0
..........................................................................................................................................................................GGCGATGACGAGACTAAAGCTTGCCG....................................................... 26 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................AACGTAAACGACGATGTATCGTCGT........................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................................ACGAGACGAGGGCGATGACGA...................................................................... 21 0 20 0.05 1 0 0 0 1 0
..................................................................................................................................................................................CGTGACTAAAGCTTGCCGAT..................................................... 20 1 20 0.05 1 0 0 1 0 0
...................................................................................................................................................................................GAGACTAAAGCTTGCCGATGCATCGTA............................................. 27 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................GAGGGCGATGACGGGACTAAAGCTT........................................................... 25 1 20 0.05 1 0 1 0 0 0
.........................................................................................................................................................................................GAAGCTTGCCGGTGCGTCGTAT............................................ 22 3 20 0.05 1 0 0 0 1 0
......................................................................................................................................................................................................GCATCGTATCGTCTCACGTGTTTGCCT.......................... 27 1 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................GAGGGCGATGACGAGACTAAA............................................................... 21 0 20 0.05 1 0 1 0 0 0
......................................................................................................................................................................ATAGGGCGATGACGAGACTAAAGCT............................................................ 25 2 20 0.05 1 0 1 0 0 0
.....................................................................................................................................................................................................GGCATCGTATCGTCTCTCGTGTTTGCCT.......................... 28 1 20 0.05 1 1 0 0 0 0
........................................................................................................................................ATCGTCGTTAAAGTTATTTTTATAAC......................................................................................... 26 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................................................................TTGCTAACGAGTAGACGAGAC.... 21 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................GCGATGACGAGACTAAAGC............................................................. 19 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................................................................................GTCTCTCGTGTTTGCCTTTTGCTAA.................. 25 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................................................................................TGCTAACGAGTAGACGAGA..... 19 0 20 0.05 1 0 1 0 0 0
.............................................................................................................................................................................................................ATCGTCTCTCGTGTTTGCCTTTTG...................... 24 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................GACTAAAGCTTGCCTATGCATCGTAT............................................ 26 1 20 0.05 1 1 0 0 0 0
..........................................................................................................................................CGTCGTTAAAGTTATTTTTATAACT........................................................................................ 25 1 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................................................................CGTATCGTCTCTCGTGTTTGCCCT......................... 24 1 20 0.05 1 0 1 0 0 0
................................................................................................................................................................................................................................TTTTGCTAACGAGTAGACGAGAC.... 23 0 20 0.05 1 0 1 0 0 0
......................................................................................................................................................................................................GCGTCGTATCGTCTCTCGTGTTTGCCT.......................... 27 1 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................................................CGTCTCTCGTGTTTGCCTTTT....................... 21 0 20 0.05 1 0 0 1 0 0
............................................................................................................................................................................................................TATCGTCTCTCGTGTTTGCCTTTT....................... 24 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................................TGCCGATGCATCGTATGGTCTCTCGT.................................. 26 1 20 0.05 1 0 1 0 0 0
..................................................................................................................................................................................CGAGACTAAAGCTTGCCGAT..................................................... 20 0 20 0.05 1 0 1 0 0 0
.........................................................................................................................CGTAAACGACGATGTATC................................................................................................................ 18 0 20 0.05 1 0 1 0 0 0
.......................................................................................................................................................................................................CATCGCATCGTCTCTCGTGTTTGCCTT......................... 27 1 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................................................TCTCTCGTGTTTGCCTTTTGCTAA.................. 24 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................GCGATGACGAGACTAAAGCT............................................................ 20 0 20 0.05 1 0 1 0 0 0
.......................................................................................................................................................................................CTAAAGCTTGCCGATGCAT................................................. 19 0 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................CGAGGGCGATGACGAGGCTGGAGC............................................................. 24 3 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................AGACGAGGGCGATGACGAGACTAAAGCT............................................................ 28 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................TGTATCGTCGTTAAAGTTATTTTTAT............................................................................................ 26 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................................AGCCGATGCATCGTATCGTCTCTCGTGT................................ 28 1 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................................GGGCGATGACGAGACTAAAGCTTGCCG....................................................... 27 0 20 0.05 1 0 1 0 0 0
..........................................................................................................................................................................GGCGATGACGAGACTAAAGCT............................................................ 21 0 20 0.05 1 0 1 0 0 0
..................................................................................................................................................................TAGACGAGGGCGATGACGAGACT.................................................................. 23 1 20 0.05 1 0 1 0 0 0
...................................................................................................................................................................................GAGACTAAAGCTTGCCGATGCATCGTAT............................................ 28 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................................TGCATCGTATCGTCTCTCGTGTT............................... 23 0 20 0.05 1 0 1 0 0 0
......................................................................................................................................................................................................GCATCGTATCGTCTCTCGTGTTTGACT.......................... 27 1 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................................................................TTGCTAACGAGTAGACGAGGC.... 21 1 20 0.05 1 0 0 0 1 0
..........................................................................................................................................................................................................CGTATCGTCTCTGGTGTTTGCCTTT........................ 25 1 20 0.05 1 0 0 0 0 1
..........................................................................................................................................................................................................CGTATCGTCTCTCGTGTTTG............................. 20 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................................................................CGTATCGTCTCTCGTGTTTGC............................ 21 0 20 0.05 1 1 0 0 0 0
................................................................................................................................................................ACGAGACGAGGGCGATGACGAGAC................................................................... 24 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................GACTAAAGCTTGCCGATGCATCGTAT............................................ 26 0 20 0.05 1 0 1 0 0 0
....................................................................................................................................................................CACGAGGGCGATGACGAGACTAAAGCTT........................................................... 28 1 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................................GGCGATGACGAGTCTAAAGCTTGCCTAT..................................................... 28 2 20 0.05 1 0 1 0 0 0
.........................................................................................................................................................................................................TCGTATCGTCTCTCGTGTTTGCCTTT........................ 26 0 20 0.05 1 0 0 0 0 1
.......................................................................................................................................TATCGTCGTTAAGGTTATTTTTATAA.......................................................................................... 26 1 20 0.05 1 0 1 0 0 0
...................................................................................................................................GATGTATCGTCGTTAAAGTTATTTTTA............................................................................................. 27 0 20 0.05 1 0 0 0 1 0
....................................................................................................................................................................................AGACTAAAGCTTGCCGATGCAT................................................. 22 0 20 0.05 1 0 1 0 0 0
.......................................................................................................................................................................ATGGGCGATGACGAGACTAAAGCTT........................................................... 25 2 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................AGGGCGATGACGAGACTAAAGCTTG.......................................................... 25 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................................TGCCGATGCATCGTATCGTCTCTCGTGTT............................... 29 0 20 0.05 1 0 0 0 1 0
.....................................................................................................................................................................................................................TCGTGTTTGCCTTTTGCTAA.................. 20 0 20 0.05 1 0 0 1 0 0
........................................................................................................................................................................AGGGCGATGACGAGACTAAAGCTT........................................................... 24 0 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000001088:3746-3996 - dwi_226 CCATTAGAGGG------CAAGTTACTGCTTTAAGGATAGAGACCCCACAGGTTGAGGTATATCAGAGAGTGACAATTGACCCTAGCGTGAAGTGTGAAGTTAAGTTAGACATTGTAAAGCAGTGTTTGCATTTGCTG--CTACATAGCAGCAATTTCAATA-AAAATATTGCTCTGCTCCCGCTACTGCTCTGATTTCGAACGGCTACGTAGCATAGCAGAGAGCACAAACGGAAAACGATTGCTCATCTGCTCTGCTCC
droVir3 scaffold_12723:389277-389404 + AAG--------------------------------------------------------------------------------------------------------------------CAGCATTTGAATATGCTACGCTATTCCGTAGT--------------ATTTCGTTTTGCTCTCGATATCACTATCTCTTTCAACAGAGGCGTAGCAAAGCCAGAGCCAAAAAATGAAAAAGTATTTGC-TGTGCTCTGCTT-
droMoj3 scaffold_6500:32086565-32086715 - AAAAATT----------------TTAT------------------------------------------------------------------------------------------AACAGTGTTTGCATTTGCTG--CTACATAGCAGCAATTTCAATC-AAGATATTGCTCTGCTCTCGCTATTGCTCTGATTTCGAACGGCTACGTAGCATAGCAGAGAGCACAAAAACAAAACGAATGCTATTCTGCTCTGCTCC
droGri2 scaffold_14853:9686490-9686618 + CA-----------------------------------------------------------------------------------------------------------------------GTGATTGAATTTACTA--CTCCGTAGCACCAAGAACAATA-GAAACATTGCTCTGCTATTGCTACCACTATGAATTTGTACAGAGCAATAACAGAGCA-------CAAAA-CTGAAAGATTGCTC-ATTCGCTTGCTCA
dp5 Unknown_singleton_1454:6338-6427 - TTTG----------------------------CAGGTCGAAGCGCCGCAAATTGTCACATACGTGAAAATATCCGTCGATCCTAACGCCAAATGCGACGTTCCCTTAGACATTATTAA----------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_81:96373-96474 + AGAT----------------ATTCGAAGACTGCACGTAAAAGCACCTCAGGTCGAGTCATATCAGAGGATTAGCATAAATCCAGCCATCCCGTGTGATTTAAAATTAGACATTATAAA----------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_12911:238214-238334 + CTGTTAGATCG------CAGGTTAGTGCGCTGACAGTATAAGCGCCGCAAGTTCAGGTTTATCAAATGGCAGTACCGAACCCTGAAAAAAAATGCGATGTTAAATTAGACATTGTAAA------------------------------------------------------------------------------------------------------------------------A-------------TCTTTGCA
droBip1 scf7180000395413:10228-10369 + TATAT------------------------------------------------------------------------------------------------------------------CAGCGTTTGCATTTGCTG--CTACATAGCAGCAATTTAAGTA-AAAATATTACTCTGCTCCCGCTATTGCTCTGTTTTCGATCGGCTCTGTAGCATAGCAGAGAGCACAAAATCAAAACGGCTGCTC-TCTGCTCTGCTCT
droKik1 scf7180000298560:11289-11436 - ACACTGCACA-------------------------------------------------------------------------------------------------------------CAGGGTTTGCATTTACTG--CTCCATAGCAGCAAAATTCATAAAAAATATTGCTATGCTATTGCTACCGCTCTCACTTTGATGAGAGCCGTAGCAGAGCCGTAGCAGCAGAACGGCAAAGCCTATGC-TCTGCTCTGCTCG
droFic1 scf7180000451467:370-527 + TAGTTTCGATG------TTGTTTAGCC--------------------------------------------------------------------------------------------CAGCGTTTGCATTTGCTG--CTACATAGCAGCAATTTATGTA-AAAATATTGCTCTGCTCCCGCTATTGCTCTGTTTTCGATTGGCTCTGTAGCATAGCAGAGGGCACAAAATCAAAACGGCTGCTC-TCTGCTCTGCTCT
droEle1 scf7180000490557:19796-19941 + GACATTGTTCC------T---------------------------------------------------------------------------------------------------ATCAGGGTTTGCATTTGTTA--CTCCCAAGAAGCGAGGCTTATA-AATATATTGTTATGCTATTGTTACCGCTCTCACTTTGACGAGAGCCGGATCAGAGAATTAGCAGAACAACGAAAATGTA------TTTGCTCTGCTCT
droRho1 scf7180000777018:1328-1468 + AAT--------------------------------------------------------------------------------------------------------------------CAGTGTTTGCATTTGCTG--CTACATAGCAGCAATTTCAATA-AAAATATTGCTCTGCTCTCGCTATTGCTCTGATTTCGTTCGGCTCTGTAGCATAGCAGAGGCCACAAAAGCAAAACGGTTGCTCTTCTGCTCTGCTCT
droBia1 scf7180000301749:42070-42181 + CGGTTAGAACA------CAGGTTAGCGCGCTGTCAGTGCAAGCGCCGCAAGTGGAGGTCTATGAAAGAGTAGTACCAGACCCTGCAGTAAGATGCGATGTCAAGTTAGACATAGTAAA----------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415750:75512-75674 + GGAGATGAGTTAGTAAGTAGT-----------AGTA---------------------------------------------------------------------------------AGCAGTGTTTGCAATTACTA--CTCCGTAGTAGCGAGATGAATA-CAAATATTGCTATGCTATTGCTATCGCTCTCTTTTTGACGAGAGCCGTAGCAGAGCCATAGCAAAATAACGAGAAAGTTTGTGC-TCTGCTCTGCTC-
droEug1 scf7180000407053:2172-2337 - GTATGA--ATT------TAAATTTTTTAATGTATAAT---------------------------------------------------------------------------------GCAGAGTTTGCATTTATTA--CTCCGTAGCAGCGAGATTCTTT-AAAATATTGCTTTGCTATTGTTACCACTCTCACTTTTACGAGAGCTAGAGCAGAGCTATAGCAGAACATTGAAAAATGATGTGC-TCTGGTCTGCTC-
dm3 chrU:4896799-4896926 - AAGTTAAACAC------CAGATGCAAAACTTGCGTGTGGAAACACCACAAGTAGAGGCATACCAGAAAATAATCGTTGACCTTAACATACCGTGCGGGGTAAAACTGGACATTGTCAA------------------------------------------------------------------------------------------------------------------------G-----AC-ATTGCCAGAATTT
droSim2 node_44820:201-312 + CAGTTAGAAAC------CAGGTCAGCTCGTTAACTGTGCAGGCACCCCAAGTAGAAGTTTATGAAAGGGTAACGCCGGACCCCAGCATAAAGTGTGACGTCAAGTTAGATATTGTGAA----------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_582:8688-8799 - CAGTTAGAAAC------CAGGTCAGCTCGTTAACTGTGCAGGCACCCCAAGTAGAAGTTTATGAAAGGGTAACGCCGGACCCCAGCATAAAGTGTGATGTCAAGTTAGATATTGTGAA----------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2L:21842388-21842499 + CAGTTAGAAAC------CAGGTCAGCTCGTTAACTGTGCAGGCACCCCAAGTAGAAGTTTATGAAAGGGTAACGCCGGACCCCAGCATAAAGTGTGATGTCAAGTTAGATATTGTGAA----------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4845:7386658-7386789 - AGGTCAGGCAA------ATAGTGAAAGACCTGCAGGTGGAAACACCGTAAGTAGAGGCATATCAAAGGATCACTATAGATCCGAGCATTAGGTGCGAAGTGAAGCTGGACATAGTAAT------------------------------------------------------------------------------------------------------------------------GTCCATGC-CTGAGTTTACTG-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CCATTAGAGGG------CAAGTTACTGCTTTAAGGATAGAGACCCCACAGGTTGAGGTATATCAGAGAGTGACAATTGACCCTAGCGTGAAGTGTGAAGTTAAGTTAGACATTGTAAAGCAGTGTTTGCATTTGCTG--CTACATAGCAGCAATTTCAATA-AAAATATTGCTCTGCTCCCGCTACTGCTCTGATTTCGAACGGCTACGTAGCATAGCAGAGAGCACAAACGGAAAACGATTGCTCATCTGCTCTGCTCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................TAAGGATAGAGACCCCACAGGTT...............................................................................................................................................................................................................23120.17201010
................................................................................................................................................................................................................................CACAAACGGAAAACGATTGCTCATC...........25190.16303000
..............................................................................................................................................................................................CTGATTTCGAACGGCTACGTAGCAT.............................................25200.15303000
................................................................................................................................................................................................................................CACAAACGGAAAACGATTGCTCATCTG.........27190.11202000
..............................................................................................................................................................................................CTGATTTCGAACGGCTACGTA.................................................21200.10202000
.......................................AGACCCCACAGGTTGAGGTATATCAGAG.................................................................................................................................................................................................28100.10101000
.................................................................................................................................................................................TCCCGCTACTGCTCTGATTTCGAACGGC.......................................................28200.10210010
......................................................................................................................................................................................................................TAGCAGAGAGCACAAACGGAAAACGAT...................27200.10202000
..........................................................ATATCAGAGAGTGACAATTGACC...................................................................................................................................................................................23110.09100010
................................AGGATAGAGACCCCACAGGTTGAGG...........................................................................................................................................................................................................25110.09101000
......................................................AGGTATATCAGAGAGTGACAATTG......................................................................................................................................................................................24110.09101000
......................TACTGCTTTAAGGATAGAGACCCCA.....................................................................................................................................................................................................................25110.09101000
..........................GCTTTAAGGATAGAGACCCCACAGGT................................................................................................................................................................................................................26110.09100100
..........................GCTTTAAGGATAGAGACCCCACAGG.................................................................................................................................................................................................................25110.09101000
......................................................AGGTATATCAGAGAGTGACAATTGA.....................................................................................................................................................................................25110.09100100
......................TACTGCTTTAAGGATAGAGACCCC......................................................................................................................................................................................................................24110.09100100
............................TTTAAGGATAGAGACCCCACAGGT................................................................................................................................................................................................................24120.08101000
...........................................................................................GTGTGAAGTTAAGTTAGACATTGTAA...............................................................................................................................................26120.08101000
..............................TAAGGATAGAGACCCCACAGGTTGA.............................................................................................................................................................................................................25120.08100010
............................TTTAAGGATAGAGACCCCACAGG.................................................................................................................................................................................................................23120.08101000
.......................................................................................TGAAGTGTGAAGTTAAGTTAGACATT...................................................................................................................................................26120.08101000
............................TTTAAGGATAGAGACCCCACAGGTTG..............................................................................................................................................................................................................26120.08101000
...............................................................AGAGAGTGACAATTGACCCTAG...............................................................................................................................................................................22130.08101000
...TTAGAGGG------CAAGTTACTGCTTTAA...................................................................................................................................................................................................................................24140.07101000
...................................................................................................................................................................................................................................AAACGGAAAACGATTGCTCATCTGC........25190.05101000
.................................................................................................................................................................................................................................ACAAACGGAAAACGATTGCTCATCT..........25190.05101000
...................................................................................................................................................................................................................................AAACGGAAAACGATTGCTCATCTG.........24190.05101000
......................................................................................................................................................................................................................................CGGAAAACGATTGCTCATCTGCTC......24190.05101000
.......................................................................................................................................................................................................................................GGAAAACGATTGCTCATCTGC........21190.05110000
..................................................................................................................................................................................................................................CAAACGGAAAACGATTGCTCATCTGC........26190.05101000
.................................................................................................................................................................................................................................ACAAACGGAAAACGATTGCTCATC...........24190.05101000
..............................................................................................................................................................................................CTGATTTCGAACGGCTACGTAGCA..............................................24200.05100010
...............................................................................................................................................................................................................CGTAGCATAGCAGAGAGCATT................................21200.05101000
................................................................................................................................................................................................................................CACAAACGGAAAACGATTGCTCATCTTA........28200.05100010
.............................................................................................................................TTGCATTTGCTG--CTACATAGCAGCAA...........................................................................................................26200.05101000
............................................................................................................................................................................................CTCTGATTTCGAACGGCTACGTAGCA..............................................26200.05101000
........................................................................................................................................................................................ACTGCTCTGATTTCGAACGGCTACGT..................................................26200.05101000
.............................................................................................................................................................................................TCTGATTTCGAACGGCTACGT..................................................21200.05101000
......................................................................................................................................................................................................................TAGCAGAGAGCACAAACGGAAA........................22200.05101000
............................................................................................................................................TACATAGCAGCAATTTCAATA-AAAATAT...........................................................................................28200.05100010
.................................................................................................................................................................................................ATTTCGAACGGCTACGTAGCA..............................................21200.05101000
...........................................................................................................................................CTACATAGCAGCAATTTCAATA-AAAAA.............................................................................................27200.05100010
.........................................................................................................................................................................TGCTCTGCTCCCGCTACTGCTCTGAT.................................................................26200.05101000
.........................................................................................................................................................................TGCTCTGCTCCCGCTACTGCTCTGA..................................................................25200.05100010
.......................................................................................................................................................................................TACTGCTCTGATTTCGAACGGCTACG...................................................26200.05100100
............................................................................................................................................................................................................................................ACGATTGCTCATCTGCTCTGCTCC24200.05101000
droVir3
AAG--------------------------------------------------------------------------------------------------------------------CAGCATTTGAATATGCTACGCTATTCCGTAGT--------------ATTTCGTTTTGCTCTCGATATCACTATCTCTTTCAACAGAGGCGTAGCAAAGCCAGAGCCAAAAAATGAAAAAGTATTTGC-TGTGCTCTGCTT-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
AAAAATT----------------TTAT------------------------------------------------------------------------------------------AACAGTGTTTGCATTTGCTG--CTACATAGCAGCAATTTCAATC-AAGATATTGCTCTGCTCTCGCTATTGCTCTGATTTCGAACGGCTACGTAGCATAGCAGAGAGCACAAAAACAAAACGAATGCTATTCTGCTCTGCTCCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CA-----------------------------------------------------------------------------------------------------------------------GTGATTGAATTTACTA--CTCCGTAGCACCAAGAACAATA-GAAACATTGCTCTGCTATTGCTACCACTATGAATTTGTACAGAGCAATAACAGAGCA-------CAAAA-CTGAAAGATTGCTC-ATTCGCTTGCTCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
TTTG----------------------------CAGGTCGAAGCGCCGCAAATTGTCACATACGTGAAAATATCCGTCGATCCTAACGCCAAATGCGACGTTCCCTTAGACATTATTAA----------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..TG----------------------------CAGGTCGAAGCGCCGCAAATTG..............................................................................................................................................................................................................2470.1410100000000
droPer2
AGAT----------------ATTCGAAGACTGCACGTAAAAGCACCTCAGGTCGAGTCATATCAGAGGATTAGCATAAATCCAGCCATCCCGTGTGATTTAAAATTAGACATTATAAA----------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
CTGTTAGATCG------CAGGTTAGTGCGCTGACAGTATAAGCGCCGCAAGTTCAGGTTTATCAAATGGCAGTACCGAACCCTGAAAAAAAATGCGATGTTAAATTAGACATTGTAAA------------------------------------------------------------------------------------------------------------------------A-------------TCTTTGCASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TATAT------------------------------------------------------------------------------------------------------------------CAGCGTTTGCATTTGCTG--CTACATAGCAGCAATTTAAGTA-AAAATATTACTCTGCTCCCGCTATTGCTCTGTTTTCGATCGGCTCTGTAGCATAGCAGAGAGCACAAAATCAAAACGGCTGCTC-TCTGCTCTGCTCTSizeHit CountTotal NormTotal
No Reads
droKik1
ACACTGCACA-------------------------------------------------------------------------------------------------------------CAGGGTTTGCATTTACTG--CTCCATAGCAGCAAAATTCATAAAAAATATTGCTATGCTATTGCTACCGCTCTCACTTTGATGAGAGCCGTAGCAGAGCCGTAGCAGCAGAACGGCAAAGCCTATGC-TCTGCTCTGCTCGSizeHit CountTotal NormTotal
No Reads
droFic1
TAGTTTCGATG------TTGTTTAGCC--------------------------------------------------------------------------------------------CAGCGTTTGCATTTGCTG--CTACATAGCAGCAATTTATGTA-AAAATATTGCTCTGCTCCCGCTATTGCTCTGTTTTCGATTGGCTCTGTAGCATAGCAGAGGGCACAAAATCAAAACGGCTGCTC-TCTGCTCTGCTCTSizeHit CountTotal NormTotal
No Reads
droEle1
GACATTGTTCC------T---------------------------------------------------------------------------------------------------ATCAGGGTTTGCATTTGTTA--CTCCCAAGAAGCGAGGCTTATA-AATATATTGTTATGCTATTGTTACCGCTCTCACTTTGACGAGAGCCGGATCAGAGAATTAGCAGAACAACGAAAATGTA------TTTGCTCTGCTCTSizeHit CountTotal NormTotal
No Reads
droRho1
AAT--------------------------------------------------------------------------------------------------------------------CAGTGTTTGCATTTGCTG--CTACATAGCAGCAATTTCAATA-AAAATATTGCTCTGCTCTCGCTATTGCTCTGATTTCGTTCGGCTCTGTAGCATAGCAGAGGCCACAAAAGCAAAACGGTTGCTCTTCTGCTCTGCTCTSizeHit CountTotal NormTotal
No Reads
droBia1
CGGTTAGAACA------CAGGTTAGCGCGCTGTCAGTGCAAGCGCCGCAAGTGGAGGTCTATGAAAGAGTAGTACCAGACCCTGCAGTAAGATGCGATGTCAAGTTAGACATAGTAAA----------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GGAGATGAGTTAGTAAGTAGT-----------AGTA---------------------------------------------------------------------------------AGCAGTGTTTGCAATTACTA--CTCCGTAGTAGCGAGATGAATA-CAAATATTGCTATGCTATTGCTATCGCTCTCTTTTTGACGAGAGCCGTAGCAGAGCCATAGCAAAATAACGAGAAAGTTTGTGC-TCTGCTCTGCTC-SizeHit CountTotal NormTotal
No Reads
droEug1
GTATGA--ATT------TAAATTTTTTAATGTATAAT---------------------------------------------------------------------------------GCAGAGTTTGCATTTATTA--CTCCGTAGCAGCGAGATTCTTT-AAAATATTGCTTTGCTATTGTTACCACTCTCACTTTTACGAGAGCTAGAGCAGAGCTATAGCAGAACATTGAAAAATGATGTGC-TCTGGTCTGCTC-SizeHit CountTotal NormTotal
No Reads
dm3
AAGTTAAACAC------CAGATGCAAAACTTGCGTGTGGAAACACCACAAGTAGAGGCATACCAGAAAATAATCGTTGACCTTAACATACCGTGCGGGGTAAAACTGGACATTGTCAA------------------------------------------------------------------------------------------------------------------------G-----AC-ATTGCCAGAATTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................TACCAGAAAATAATCGTTGA.....................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TGGAAACACCACAAGTAG..............................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
droSim2
CAGTTAGAAAC------CAGGTCAGCTCGTTAACTGTGCAGGCACCCCAAGTAGAAGTTTATGAAAGGGTAACGCCGGACCCCAGCATAAAGTGTGACGTCAAGTTAGATATTGTGAA----------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................TAACTGTGCAGGCACCCCAAGTAGAAGT..........................................................................................................................................................................................................2829.5019000000110800000000
..................................TGTGCAGGCACCCCAAGTAGAAGTTTA.......................................................................................................................................................................................................2728.0016000000204000100000
...............................AACTGTGCAGGCACCCCAAGTAGAAGT..........................................................................................................................................................................................................2725.501100000040510010000
.....................................GCAGGCACCCCAAGTAGAAGTTTATGA....................................................................................................................................................................................................2725.001000000000300070000
..................................TGTGCAGGCACCCCAAGTAGAAGT..........................................................................................................................................................................................................2424.50900000060200010000
......................................................AAGTTTATGAAAGGGTAACGCCGGA.....................................................................................................................................................................................2524.00800000050300000000
...................................................................................AGCATAAAGTGTGACGTCAAGTTAGA.......................................................................................................................................................2613.00300000030000000000
..................................TGTGCAGGCACCCCAAGTAGAAGTT.........................................................................................................................................................................................................2523.00600000000000042000
.............................TTAACTGTGCAGGCACCCCAAGTAGA.............................................................................................................................................................................................................2622.50500000010310000000
..............................TAACTGTGCAGGCACCCCAAGTAGA.............................................................................................................................................................................................................2522.50500000020300000000
........................................GGCACCCCAAGTAGAAGTTTATGAA...................................................................................................................................................................................................2522.00400000000300010000
.............................TTAACTGTGCAGGCACCCCAAGTAGAAGT..........................................................................................................................................................................................................2922.00400000010300000000
.....................................GCAGGCACCCCAAGTAGAAGTTTA.......................................................................................................................................................................................................2422.00400000010000030000
..............................TAACTGTGCAGGCACCCCAAGTAGAAG...........................................................................................................................................................................................................2722.00400000020200000000
...........................................................................CGGACCCCAGCATAAAGTGTGACGT................................................................................................................................................................2512.00200000010000010000
..........................TCGTTAACTGTGCAGGCACCCCAAGTA...............................................................................................................................................................................................................2722.00400000000100030000
....................................TGCAGGCACCCCAAGTAGAAGTTTAA......................................................................................................................................................................................................2621.50300000000000030000
....................................TGCAGGCACCCCAAGTAGAAGTTTA.......................................................................................................................................................................................................2521.50300000010000020000
........AAC------CAGGTCAGCTCGTTAACTGT...............................................................................................................................................................................................................................2321.50300000000000030000
...............................................CAAGTAGAAGTTTATGAAAGGGTAA............................................................................................................................................................................................2521.50300000000000030000
...............................................CAAGTAGAAGTTTATGAAAGGGTAACGC.........................................................................................................................................................................................2821.50300000000000030000
......................................................AAGTTTATGAAAGGGTAACGCCGGAC....................................................................................................................................................................................2621.50300000020000010000
.....................................................................TAACGCCGGACCCCAGCATAAAGTG......................................................................................................................................................................2521.50300000000100020000
..................................TGTGCAGGCACCCCAAGTAGAAGTTT........................................................................................................................................................................................................2621.50300000000000030000
..............................................................................ACCCCAGCATAAAGTGTGACGTCAAGT...........................................................................................................................................................2711.00100000000100000000
....................................TGCAGGCACCCCAAGTAGAAGTTTATGA....................................................................................................................................................................................................2821.00200000010000010000
....................................TGCAGGCACCCCAAGTAGAAGTTTAT......................................................................................................................................................................................................2621.00200000000000020000
........................................................................CGCCGGACCCCAGCATAAAGTGTGA...................................................................................................................................................................2521.00200000020000000000
............................................................................................TGTGACGTCAAGTTAGATATTGTGA...............................................................................................................................................2511.00100000000100000000
....................................TGCAGGCACCCCAAGTAGAAGTTT........................................................................................................................................................................................................2421.00200000000000020000
..................................TGTGCAGGCACCCCAAGTAGAAGTTTAT......................................................................................................................................................................................................2821.00200000000000020000
....TAGAAAC------CAGGTCAGCTCGTTAAC..................................................................................................................................................................................................................................2421.00200000020000000000
...................................................................................AGCATAAAGTGTGACGTCAAGTTAGATA.....................................................................................................................................................2811.00100000000100000000
..........................TCGTTAACTGTGCAGGCACCCCAA..................................................................................................................................................................................................................2421.00200000000000020000
CAGTTAGAAAC------CAGGTCAGCTCGTT.....................................................................................................................................................................................................................................2521.00200000000200000000
.......................................................................................TAAAGTGTGACGTCAAGTTA.........................................................................................................................................................2011.00100000000100000000
...................................................................................AGCATAAAGTGTGACGTCAAG............................................................................................................................................................2111.00100000000010000000
...............................................CAAGTAGAAGTTTATGAAAGGGTAAA...........................................................................................................................................................................................2621.00200000010000010000
............................................................................................TGTGACGTCAAGTTAGATATTGTGAA----------------------------------------------------------------------------------------------------------------------------------------------2611.00100000010000000000
.....................................GCAGGCACCCCAAGTAGAAGTTTATGAA...................................................................................................................................................................................................2821.00200000000000020000
....TAGAAAC------CAGGTCAGCTCGTTAACTGTGC.............................................................................................................................................................................................................................2920.50100000010000000000
..................................TGTGCAGGCACCCCAAGTAGAAGTTA........................................................................................................................................................................................................2620.50100000000000010000
....................................................................GTAACGCCGGACCCCAGCATAAAGTG......................................................................................................................................................................2620.50100000000000010000
..................................TGTGCAGGCACCCCAAGTAGAAGTA.........................................................................................................................................................................................................2520.50100000000000010000
...TTAGAAAC------CAGGTCAGCTCGTTAACTG................................................................................................................................................................................................................................2720.50100000001000000000
................................ACTGTGCAGGCACCCCAAGTAGAAGTT.........................................................................................................................................................................................................2720.50100000000000010000
.......................AGCTCGTTAACTGTGCAGGCACCCCA...................................................................................................................................................................................................................2620.50100000000000010000
....TAGAAAC------CAGGTCAGCTCGTTAACTGT...............................................................................................................................................................................................................................2720.50100000000001000000
................................ACTGTGCAGGCACCCCAAGTAGAAGT..........................................................................................................................................................................................................2620.50100000000100000000
...TTAGAAAC------CAGGTCAGCTCGTTAAC..................................................................................................................................................................................................................................2520.50100000000001000000
..............................................CCAAGTAGAAGTTTATGAAAGGGT..............................................................................................................................................................................................2420.50100000000000010000
..................................................GTAGAAGTTTATGAAAGGGTAACGCC........................................................................................................................................................................................2620.50100000000100000000
.................................................AGTAGAAGTTTATGAAAGGGTAAC...........................................................................................................................................................................................2420.50100000010000000000
..........................................................................CCGGACCCCAGCATAAAGTGTGA...................................................................................................................................................................2320.50100000000100000000
............................GTTAACTGTGCAGGCACCCCAAG.................................................................................................................................................................................................................2320.50100000010000000000
......................................................AAGTTTATGAAAGGGTAACGCCGGT.....................................................................................................................................................................................2520.50100000000100000000
.......................................AGGCACCCCAAGTAGAAGTTT........................................................................................................................................................................................................2120.50100000000000001000
.................................................................AGGGTAACGCCGGACCCCAGCATAAAG........................................................................................................................................................................2720.50100000010000000000
...........................................................................CGGACCCCAGCATAAAGTGTGAA..................................................................................................................................................................2320.50100000000000010000
...................................................TAGAAGTTTATGAAAGGGTAACGCCGGA.....................................................................................................................................................................................2820.50100000000100000000
.....................TCAGCTCGTTAACTGTGCAGGCACCCC....................................................................................................................................................................................................................2720.50100000000100000000
..................................TGTGCAGGCACCCCAAGTAGAA............................................................................................................................................................................................................2220.50100000000100000000
................................................AAGTAGAAGTTTATGAAAGGGTAACGC.........................................................................................................................................................................................2720.50100000000000010000
........................GCTCGTTAACTGTGCAGGCAC.......................................................................................................................................................................................................................2120.50100000000000010000
.............................TTAACTGTGCAGGCACCCCAAGTA...............................................................................................................................................................................................................2420.50100000010000000000
..........................................................TTATGAAAGGGTAACGCCGGACCCC.................................................................................................................................................................................2520.50100000000010000000
......................................CAGGCACCCCAAGTAGAAGTTTATGA....................................................................................................................................................................................................2620.50100000010000000000
........................................GGCACCCCAAGTAGAAGTTTATGA....................................................................................................................................................................................................2420.50100000000100000000
..........................TCGTTAACTGTGCAGGCACCCCAAG.................................................................................................................................................................................................................2520.50100000000000010000
.................................................AGTAGAAGTTTATGAAAGGGTAACGCC........................................................................................................................................................................................2720.50100000000100000000
..........................TCGTTAACTGTGCAGGCACCCCAAGT................................................................................................................................................................................................................2620.50100000010000000000
......................................................AAGTTTATGAAAGGGTAACGCCGGAT....................................................................................................................................................................................2620.50100000010000000000
......................................CAGGCACCCCAAGTAGAAGTTTATGAA...................................................................................................................................................................................................2720.50100000000000010000
droSec2
CAGTTAGAAAC------CAGGTCAGCTCGTTAACTGTGCAGGCACCCCAAGTAGAAGTTTATGAAAGGGTAACGCCGGACCCCAGCATAAAGTGTGATGTCAAGTTAGATATTGTGAA----------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CAGTTAGAAAC------CAGGTCAGCTCGTTAACTGTGCAGGCACCCCAAGTAGAAGTTTATGAAAGGGTAACGCCGGACCCCAGCATAAAGTGTGATGTCAAGTTAGATATTGTGAA----------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AGGTCAGGCAA------ATAGTGAAAGACCTGCAGGTGGAAACACCGTAAGTAGAGGCATATCAAAGGATCACTATAGATCCGAGCATTAGGTGCGAAGTGAAGCTGGACATAGTAAT------------------------------------------------------------------------------------------------------------------------GTCCATGC-CTGAGTTTACTG-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................ATTAGGTGCGAAGTGAAGCTG.........................................................................................................................................................2132.0061000500
....................................................AGAGGCATATCAAAGGATCAC...........................................................................................................................................................................................2130.6721000010
.................ATAGTGAAAGACCTGCAGGTG..............................................................................................................................................................................................................................2130.6721000010
..........................................................................ATAGATCCGAGCATTAGGTGC.....................................................................................................................................................................2130.6721000010
.......................AAAGACCTGCAGGTGGAAACA........................................................................................................................................................................................................................2130.6722000000
........................................................................CTATAGATCCGAGCATTAGGT.......................................................................................................................................................................2130.6720000110
......................................................................................ATTAGGTGCGAAGTGAAGC...........................................................................................................................................................1930.6720000110
..........A------ATAGTGAAAGACCTGCAGGTGGAAACAC.......................................................................................................................................................................................................................2930.3310100000
...TCAGGCAA------ATAGTGAAAGACC......................................................................................................................................................................................................................................2130.3311000000
....CAGGCAA------ATAGTGAAAGACCTGCA..................................................................................................................................................................................................................................2430.3311000000
.....................................................................TCACTATAGATCCGAGCATT...........................................................................................................................................................................2030.3310000100
........................................................GCATATCAAAGGATCACTATAGATC...................................................................................................................................................................................2530.3310000100
...........................................................................TAGATCCGAGCATTAGGTGCG....................................................................................................................................................................2130.3310000010
..............................................................................................................ATAGTAAT------------------------------------------------------------------------------------------------------------------------GTCCATGC-CTGAG........2130.3310000100
......................................................AGGCATATCAAAGGATCACT..........................................................................................................................................................................................2030.3310001000
..........A------ATAGTGAAAGACCTGCAGGT...............................................................................................................................................................................................................................2130.3310000010
........................................................................................TAGGTGCGAAGTGAAGCTGGACATAG..................................................................................................................................................2630.3310000100
.....................TGAAAGACCTGCAGGTGGAAA..........................................................................................................................................................................................................................2130.3311000000
....................................................................................................................AT------------------------------------------------------------------------------------------------------------------------GTCCATGC-CTGAGTTTACT..2130.3310000010
............................................................................................TGCGAAGTGAAGCTGGACATAGTAAT------------------------------------------------------------------------------------------------------------------------G.....................2730.3311000000
...................................................................GATCACTATAGATCCGAGCATTAGG........................................................................................................................................................................2530.3311000000
...............................................TAAGTAGAGGCATATCAAAGGAA..............................................................................................................................................................................................2330.3311000000
......................................................................................ATTAGGTGCGAAGTGAAGCTGGA.......................................................................................................................................................2330.3310000100
...................AGTGAAAGACCTGCAGGTGG.............................................................................................................................................................................................................................2030.3311000000
..................................................................................................................TAAT------------------------------------------------------------------------------------------------------------------------GTCCATGC-CTGAGTT......1930.3311000000
.......................................................................ACTATAGATCCGAGCATTAGG........................................................................................................................................................................2130.3310000100
....................................TGGAAACACCGTAAGTAGAGGCATA.......................................................................................................................................................................................................2530.3310100000

Generated: 05/17/2015 at 10:15 PM