ID:

dwi_2248

 Coordinate:

scf2_1100000004830:657592-657742 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-14.1 -14.1 -13.5

Flybase annnotation

exon [dwil_GLEANR_12505:2]; CDS [Dwil\GK12354-cds]; intron [Dwil\GK12354-in]

No Repeatable elements found

mature
  1. scf2_1100000011193:1012-1036 +
  2. scf2_1100000004837:1469685-1469709 +
  3. dwi_2248  scf2_1100000004830:657709-657733 +
star
  1. scf2_1100000011193:950-976 +
  2. scf2_1100000004837:1469627-1469653 +
  3. dwi_2248  scf2_1100000004830:657647-657673 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGTCCAGAAAATTTTGTATCTGGCAATTCCATTTGACTTCCCCTTGAGCTCCATCCAACTCATCCTTATCGATGACGTCGAAATTGTTTTTAAGAGCCTCCTTTATACCGTTTATGAAGGCCCAGAAGAGAGCCAGCGTACATACATATGTATGTACATATTTTGCATTTCAAGATTATATATCATTATGCTTCATTGCAGCTGATCAATTCTGATGAAGTTGCTGACAGCATTCTGACGATCTTAATGCA
*********************************************************************************************************............((........((((((....((((((((....)))))))).......)).))))...................))*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body		 V119
head
....................................................................................................................................................................................................TGCAGCTGATCAATTCTGATGAAGT.............................. 25 0 1 11.00 11 0 11 0 0
.............................................................................................................................................................................................................................TGCTGACAGCATTCTGACGATCTTA..... 25 0 4 1.75 7 4 3 0 0
.............................................................................................................................................................................................................................TGCTGACAGCATTCTGACGATCTTAA.... 26 0 4 1.50 6 4 2 0 0
................................................................................................................................................................................................................................TGACAGCATTCTGACGATCTTAATG.. 25 0 4 1.50 6 6 0 0 0
..........................TTCCATTTGACTTCCCCTTGAGCTCCA...................................................................................................................................................................................................... 27 0 2 1.50 3 2 1 0 0
.......................................................................................................................................................................TTTCAAGATTATATATCATTATGCT........................................................... 25 0 3 1.33 4 2 2 0 0
.............................................................................................................................................................................................................................TGCTGACAGCATTCTGACGATCTTAATG.. 28 0 4 1.25 5 5 0 0 0
...................................................................................................................................................................................................TTGCAGCTGATCAATTCTGATGAAGT.............................. 26 0 1 1.00 1 0 1 0 0
................................................................................................................................................................................................................................TGACAGCATTCTGACGATCTTAAT... 24 0 4 1.00 4 3 1 0 0
.................ATCTGGCAATTCCATTTGACTTCCCCT............................................................................................................................................................................................................... 27 0 2 1.00 2 2 0 0 0
................................................................................................................................................................................................................ATTCTGATGAAGTTGCTGACAGCA................... 24 0 2 1.00 2 2 0 0 0
.............................................................................................................................................................................................................TCAATTCTGATGAAGTTGCTGACAGCA................... 27 0 1 1.00 1 0 1 0 0
............................................TGAGCTCCATCCAACTCATCCTTAT...................................................................................................................................................................................... 25 0 2 1.00 2 2 0 0 0
...................................................................................................................................................................................................TTGCAGCTGATCAATTCTGGTGAAGT.............................. 26 1 1 1.00 1 0 1 0 0
................................................................................................................................................................................................................................TGACAGCATTCTGACGATC........ 19 0 4 0.75 3 1 2 0 0
.........................................................................................................TACCGTTTATGAAGGCCCAGAAGAGAG....................................................................................................................... 27 0 3 0.67 2 2 0 0 0
.......................................................................................................................................................................TTTCAAGATTATATATCATTATGCTT.......................................................... 26 0 3 0.67 2 2 0 0 0
................................................................................................................................................................................................................ATTCTGATGAAGTTGCTGACAGC.................... 23 0 3 0.67 2 2 0 0 0
..............................................................................................................................AGAGAGCCAGCGTACATACATATGT.................................................................................................... 25 0 3 0.67 2 1 1 0 0
...................................................................................TTGTTTTTAAGAGCCTCCTTTATACC.............................................................................................................................................. 26 0 2 0.50 1 1 0 0 0
.............................................................................................................................................................................................................................TGCTGACAGCATTCTGACGATCTT...... 24 0 4 0.50 2 2 0 0 0
...........................TCCATTTGACTTCCCCTTGAGCTCCA...................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0
........................AATTCCATTTGACTTCCCCTTGAGC.......................................................................................................................................................................................................... 25 0 2 0.50 1 0 1 0 0
................................................................................................................................................................................................................................TGACAGCATTCTGACGATCTTAATGC. 26 0 4 0.50 2 2 0 0 0
.................................TGACTTCCCCTTGAGCTCCATCCAT................................................................................................................................................................................................. 25 1 2 0.50 1 1 0 0 0
...............................................................................................................................GAGAGCCAGCGTACATACATATGTATGT................................................................................................ 28 0 2 0.50 1 0 1 0 0
............................................TGAGCTCCATCCAACTCATCCTTATC..................................................................................................................................................................................... 26 0 2 0.50 1 0 1 0 0
................TATCTGGCAATTCCATTTGACTTCCCC................................................................................................................................................................................................................ 27 0 2 0.50 1 1 0 0 0
....................TGGCAATTCCATTTGACTTCCCCT............................................................................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0
.....................GGCAATTCCATTTGACTTCCCCTTGAGC.......................................................................................................................................................................................................... 28 0 2 0.50 1 1 0 0 0
.......................CAATTCCATTTGACTTCCCCTTGAGC.......................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0
..........................TTCCATTTGACTTCCCCTTGAGC.......................................................................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0
..........................TTCCATTTGACTTCCCCTTGAGCTC........................................................................................................................................................................................................ 25 0 2 0.50 1 1 0 0 0
........................................................................TGACGTCGAAATTGTTTTTAAGAGCC......................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0
................................................................................................................................................................................................................................TGACAGCATTCTGACGATCTTAA.... 23 0 4 0.50 2 2 0 0 0
........................................................................TGACGTCGAAATTGTTTTTAAGAGC.......................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0
.............................................................................................................................................................................................................................TGCTGACAGCATTCTGACGATCT....... 23 0 4 0.50 2 0 2 0 0
.................................................................................................................................................................................................................TTCTGATGAAGTTGCTGACAGCA................... 23 0 2 0.50 1 1 0 0 0
...........TTTTGTATCTGGCAATTCCATTT......................................................................................................................................................................................................................... 23 0 2 0.50 1 0 1 0 0
................................................................................................................................................................................................................................TGACAGCATTCTGACGATCTTAATGCA 27 0 4 0.50 2 2 0 0 0
...........................TCCATTTGACTTCCCCTTGAGCTCCATC.................................................................................................................................................................................................... 28 0 2 0.50 1 1 0 0 0
....................TGGCAATTCCATTTGACTTCCCCTTG............................................................................................................................................................................................................. 26 0 2 0.50 1 1 0 0 0
...............................TTTGACTTCCCCTTGAGCTCCATCCA.................................................................................................................................................................................................. 26 0 2 0.50 1 0 1 0 0
............TTTGTATCTGGCAATTCCATTTGACT..................................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0
..........................TTCCATTTGACTTCCCCTTGAGCTCCAT..................................................................................................................................................................................................... 28 0 2 0.50 1 1 0 0 0
..............................................................................CGAAATTGTTTTTAAGAGCCTCCT..................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0
........................................................................................................................................................TGTACATATTTTGCATTTCAAGAT........................................................................... 24 0 5 0.40 2 1 1 0 0
...........................................................................................................................AGAAGAGAGCCAGCGTACATACATATT..................................................................................................... 27 1 3 0.33 1 0 1 0 0
.......................................................................................................................................................................TTTCAAGATTATATATCATTATGC............................................................ 24 0 3 0.33 1 1 0 0 0
.................................TGACTTCCCCTTGAGCTCCATC.................................................................................................................................................................................................... 22 0 3 0.33 1 1 0 0 0
..............................................................................................................................AGAGAGCCAGTGTACATACATATG..................................................................................................... 24 1 3 0.33 1 0 1 0 0
..........................................................................................TAAGAGCCTCCTTTATACCGTTTATGA...................................................................................................................................... 27 0 3 0.33 1 1 0 0 0
.........................................................................................................TACCGTTTATGAAGGCCCAGAAGAGAGC...................................................................................................................... 28 0 3 0.33 1 1 0 0 0
...............................................................................................................................GAGAGCCAGCGTACATACATATGT.................................................................................................... 24 0 3 0.33 1 0 1 0 0
..........................................................................................................................CAGAAGAGAGCCAGCGTACATACATA....................................................................................................... 26 0 3 0.33 1 1 0 0 0
..................................................................................................TCCTTTATACCGTTTATGAAGGCCC................................................................................................................................ 25 0 3 0.33 1 1 0 0 0
.......................................................................................................TATACCGTTTATGAAGGCCCAGAAGA.......................................................................................................................... 26 0 3 0.33 1 0 1 0 0
.......................................................................................................................................................................TTTCAAGATTATATATCATTATGAT........................................................... 25 1 3 0.33 1 0 1 0 0
.......................................................................................................TATACCGTTTATGAAGGCCCAGAAG........................................................................................................................... 25 0 3 0.33 1 1 0 0 0
..................................................................................................................................AGCCAGCGTACATACATATGT.................................................................................................... 21 0 3 0.33 1 0 1 0 0
.........................................................................................................TACCGTTTATGAAGGCCCAGAAGA.......................................................................................................................... 24 0 3 0.33 1 1 0 0 0
.....................................................................................................TTTATACCGTTTATGAAGGCCCAGAA............................................................................................................................ 26 0 3 0.33 1 1 0 0 0
............................................................................................................................GAAGAGAGCCAGCGTACATACATATG..................................................................................................... 26 0 3 0.33 1 0 0 0 1
..............................................................................................................................AGAGAGCCAGCGTACATACATATGTA................................................................................................... 26 0 3 0.33 1 0 1 0 0
................................................................................................................................................................................................................................TGACAGCATTCTGACGATCTTAAA... 24 1 4 0.25 1 1 0 0 0
...............................................................................................................................................................................................................................CTGACAGCATTCTGACGATCT....... 21 0 4 0.25 1 1 0 0 0
............................................................CATCCTTATCGATGACGTCGA.......................................................................................................................................................................... 21 0 4 0.25 1 0 0 1 0
...........................................................TCATCCTTATCGATGACGTCGAAA........................................................................................................................................................................ 24 0 4 0.25 1 1 0 0 0
.............................................................................................................................................................................................................................TGCTGACAGCATTCTGACGATCTTAT.... 26 1 4 0.25 1 1 0 0 0
.............................................................................................................................................................................................................................ATCTGACAGCATTCTGACGATCTTA..... 25 2 4 0.25 1 0 1 0 0
.....................................................................................................................................................................................................................................GCATTCTGACGATCTTAATGC. 21 0 4 0.25 1 1 0 0 0
.............................................................................................................................................................................................................................TGCTGACAGCATTCTGACAATC........ 22 1 4 0.25 1 0 1 0 0
................................................................................................................................................................................................................................TGACAGCATTCTGACGATCTT...... 21 0 4 0.25 1 1 0 0 0
..............................................................TCCTTATCGATGACGTCGAAA........................................................................................................................................................................ 21 0 4 0.25 1 1 0 0 0
.................................................................................................................................................................................................................................GACAGCATTCTGACGATCT....... 19 0 4 0.25 1 1 0 0 0
................................................................................................................................................................................................................................TGACAGCATTCTGACGATCT....... 20 0 4 0.25 1 1 0 0 0
.................................................................................................................................................................................................................................GACAGCATTCTGACGATCTTAATGC. 25 0 4 0.25 1 1 0 0 0
................................................................................................................................................................................................................................TGACAGCATTCTGACGATCTTA..... 22 0 4 0.25 1 1 0 0 0
.................................................................................................................................................................................................................................GACAGCATTCTGACGATCTTAATGCA 26 0 4 0.25 1 1 0 0 0
......................................................................................................................................................TATGTACATATTTTGCATTTCAAGAT........................................................................... 26 0 5 0.20 1 1 0 0 0
......................................................................................................................................................TATGTACATATTTTGCATTTCAAGATTA......................................................................... 28 0 5 0.20 1 1 0 0 0
........................................................................................................................................................TGTACATATTTTGCATTTCAAGATTA......................................................................... 26 0 5 0.20 1 0 1 0 0
................................................................................................................................................................................TATATTTCATTATGCTTCATTGCAGC................................................. 26 1 6 0.17 1 1 0 0 0
...............................................................................................................TTATGAAGGCCCAGAAGAGAGCC..................................................................................................................... 23 0 7 0.14 1 0 1 0 0
...............................................................................................................TTATGAAGGCGCAGAAGAGAGCC..................................................................................................................... 23 1 7 0.14 1 1 0 0 0
................................................................................................................TATGAAGGCCCAGAAGAGAGCCAG................................................................................................................... 24 0 7 0.14 1 0 0 1 0
...............................................................................................................TTATGAAGGCCCAGAAGAGAGC...................................................................................................................... 22 0 7 0.14 1 0 1 0 0
................................................................................................................TATGAAGGCCCAGAAGAGAGCCG.................................................................................................................... 23 1 7 0.14 1 1 0 0 0
....................................................................................................................................................................................................................................AGCAGTCCGACGATCTTAT.... 19 3 14 0.07 1 1 0 0 0
.......................................................................................................................................................................................................................................AGTCCGACGATCTTAATG.. 18 2 20 0.05 1 1 0 0 0

Anti-sense strand reads

GCAGGTCTTTTAAAACATAGACCGTTAAGGTAAACTGAAGGGGAACTCGAGGTAGGTTGAGTAGGAATAGCTACTGCAGCTTTAACAAAAATTCTCGGAGGAAATATGGCAAATACTTCCGGGTCTTCTCTCGGTCGCATGTATGTATACATACATGTATAAAACGTAAAGTTCTAATATATAGTAATACGAAGTAACGTCGACTAGTTAAGACTACTTCAACGACTGTCGTAAGACTGCTAGAATTACGT
***********************************************************............((........((((((....((((((((....)))))))).......)).))))...................))********************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body		 M020
head
.............................................................................................................................................................................................................................ACGACTGTCGTAAGACTGCTAGAA...... 24 0 4 3.50 14 14 0 0 0
..............................................................................................................................................................................................................................CGACTGTCGTAAGACTGCTAGAA...... 23 0 4 3.00 12 12 0 0 0
...........................................................................................................................................................................................................................CAACGACTGTCGTAAGACTGCTAGAA...... 26 0 4 2.50 10 8 2 0 0
..........................................................................................................................................................................................................................TCAACGACTGTCGTAAGACTGCTAGAA...... 27 0 4 2.00 8 6 1 1 0
..........................................................................................................................................................................................................................TCAACGACTGTCGTAAGACTGCTA......... 24 0 4 1.75 7 7 0 0 0
...........................................................................................................................................................................................................................CAACGACTGTCGTAAGACTGCTAGAAT..... 27 0 4 1.00 4 4 0 0 0
.........................................................TGAGTAGGAATAGCTACTGCAGCTT......................................................................................................................................................................... 25 0 4 1.00 4 0 3 1 0
.........................................................................................................................................................................................................GACTAGTTAAGACTACTTCAACGACT........................ 26 0 1 1.00 1 0 1 0 0
........................................................................................................................................................ACATGTATAAAACGTAAAGTTCTAA.......................................................................... 25 0 5 1.00 5 5 0 0 0
....................................................................................................................................................ACATACATGTATAAAACGTAAAGTTCTAA.......................................................................... 29 0 2 1.00 2 2 0 0 0
...........................................................................................................................................................................................................................CAACGACTGTCGTAAGACTGCTA......... 23 0 4 0.75 3 3 0 0 0
...........................................................................................................................................................................................................................CAACGACTGTCGTAAGACTGCTAGAATTA... 29 0 4 0.75 3 0 0 0 3
..........................................................................................................................................................................................................................TCAACGACTGTCGTAAGACTGCTAGAAT..... 28 0 4 0.75 3 1 0 2 0
.............................................................................................................................................................................................................................ACGACTGTCGTAAGACTGCTAGAAT..... 25 0 4 0.75 3 2 1 0 0
......................................................................................................................CCGGGTCTTCTCTCGGTCGCATGT............................................................................................................. 24 0 3 0.67 2 2 0 0 0
.....................................................................................................................................................................................................................CTACTTCAACGACTGTCGTAAGACT............. 25 0 2 0.50 1 1 0 0 0
..................................................GGTGGGTTGAGTAGGAATAGCTACT................................................................................................................................................................................ 25 1 2 0.50 1 0 1 0 0
................................................................................................................................................GTATACATACATGTATAAAACGTA................................................................................... 24 0 2 0.50 1 1 0 0 0
.................................................................................................................................................................................................................AAGACTACTTCAACGACTGTCGTAA................. 25 0 2 0.50 1 1 0 0 0
..........TAAAACATAGACCGTTAAGGTAAACT....................................................................................................................................................................................................................... 26 0 2 0.50 1 0 1 0 0
................................AACTGAAGGGGAACTCGAGGTAGGT.................................................................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0
...................GACCGTTAAGGTAAACTGAAGGG................................................................................................................................................................................................................. 23 0 2 0.50 1 1 0 0 0
...............................................................................................................................................................................................................................GACTGTCGTAAGACTGCTAGAA...... 22 0 4 0.50 2 2 0 0 0
.................................................AGGTAGGTTGAGTAGGAATAGCTAC................................................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0
.......................................................................................................................................................................................................................ACTTCAACGACTGTCGTAAGACTGCTA......... 27 0 2 0.50 1 1 0 0 0
.......................................................................................................................................................................................................................ACTTCAACGACTGTCGTAAGACTGC........... 25 0 2 0.50 1 1 0 0 0
..................................................GGTAGGTTGAGTGGGAATAGCTACT................................................................................................................................................................................ 25 1 2 0.50 1 1 0 0 0
..................................................GGTAGGTTGAGTAGGAATAGCTACTG............................................................................................................................................................................... 26 0 2 0.50 1 0 0 1 0
................................................................................................................................................................................................................TAAGACTACTTCAACGACTGTCGTA.................. 25 0 2 0.50 1 1 0 0 0
..................................................GGTAGGTTGAGTAGGAATAGCTACT................................................................................................................................................................................ 25 0 2 0.50 1 1 0 0 0
............................................................................................................................................................................................................................AACGACTGTCGTAAGACTGCTAGAA...... 25 0 4 0.50 2 2 0 0 0
...............................................CGAGGTAGGTTGAGTAGGAATAGCT................................................................................................................................................................................... 25 0 2 0.50 1 0 1 0 0
.........................................................................................................................................................................................................................TTCAACGACTGTCGTAAGACTGCTAGAA...... 28 0 2 0.50 1 1 0 0 0
.........................................................................................................................................................................................................................TTCAACGACTGTCGTAAGACTGCTA......... 25 0 2 0.50 1 0 1 0 0
.........................................................................................................................................................CATGTATAAAACGTAAAGTTCTAA.......................................................................... 24 0 5 0.40 2 2 0 0 0
..................................CTGAAGGGGAACTCGAGGTA..................................................................................................................................................................................................... 20 0 3 0.33 1 1 0 0 0
........................................................................................................................GGGTCTTCTCTCGGTCGCATGTAT........................................................................................................... 24 0 3 0.33 1 0 1 0 0
........................................................................................................................ATTTCTTCTCTCGGTCGCATGTATGTAT....................................................................................................... 28 3 3 0.33 1 1 0 0 0
............................................................................................................................CTTCTCTCGGTCGCATGTATGTATACAT................................................................................................... 28 0 3 0.33 1 1 0 0 0
.........................................................................................................ATGGCAAATACTTCCGGGTCTTCTCTC....................................................................................................................... 27 0 3 0.33 1 1 0 0 0
............................................................................................TCTCGGAGGAAATATGGCAAATA........................................................................................................................................ 23 0 3 0.33 1 0 1 0 0
..............................................................................................................................TCTCTCGGTCGCATGTATGTAT....................................................................................................... 22 0 3 0.33 1 1 0 0 0
........................................................................................AAATTCTCGGAGGAAATATGGCAAAT......................................................................................................................................... 26 0 3 0.33 1 1 0 0 0
.....................................................................................................................TCCGGGTCTTCTCTCGGTCGCATGTAT........................................................................................................... 27 0 3 0.33 1 1 0 0 0
..........................................................................................................................AGCTTCTCTCGGTCGCATGTATGTAT....................................................................................................... 26 2 3 0.33 1 0 1 0 0
.......................................................................................AAAATTCTCGGAGGGAATATG............................................................................................................................................... 21 1 3 0.33 1 0 1 0 0
.......................................................................................................................CGGGTCTTCTCTCGGTCGCATG.............................................................................................................. 22 0 3 0.33 1 1 0 0 0
.........................................................................................................................GGTCTTCTCTCGGTCGCATGTATGT......................................................................................................... 25 0 3 0.33 1 1 0 0 0
........................................................................................................................GGGTCTTCTCTCGGTCGCATTTATGT......................................................................................................... 26 1 3 0.33 1 0 1 0 0
..........................................................................................................................................................................................................................TCAACGACTGTCGTAAGACTGCTAGAATT.... 29 0 4 0.25 1 0 1 0 0
.............................................................................................................................................................................................................................ACGACTGTCGTAAGACTGCTT......... 21 1 4 0.25 1 1 0 0 0
..........................................................................................................................................................................................................................TCAACGACTGTCGTAAGACTGCTAGA....... 26 0 4 0.25 1 1 0 0 0
.............................................................................................................................................................................................................................ACGACTGTCGTAAGACTGCTAG........ 22 0 4 0.25 1 1 0 0 0
.........................................................TGAGTAGGAATAGCTACTGCAGCT.......................................................................................................................................................................... 24 0 4 0.25 1 0 1 0 0
...................................................................................................................................................................................................................................GTCGTAAGACTGCTAGAATTAC.. 22 0 4 0.25 1 1 0 0 0
........................................................................................AAAGTCTCGGAGGAAATATGGCAAAT......................................................................................................................................... 26 1 4 0.25 1 0 1 0 0
................................................................................................................................................................................................................................ACTGTCGTAAGACTGCTAGAAT..... 22 0 4 0.25 1 1 0 0 0
.........................................................TGAGTAGGAATAGCTACTGCAGCTTT........................................................................................................................................................................ 26 0 4 0.25 1 0 1 0 0
.............................................................................................................................................................................................................................ACGACTGTCGTAAGACTGCTAGA....... 23 0 4 0.25 1 1 0 0 0
...................................................................................................................................................................................................................................GTCGTAAGACTGCTAGAATTACGT 24 0 4 0.25 1 1 0 0 0
................................................................................................................................................................................................................................ACTGTCGTAAGACTGCTAGAA...... 21 0 4 0.25 1 1 0 0 0
............................................................................................................................................................................................................................AACGACTGTCGTAAGACTGCTA......... 22 0 4 0.25 1 0 1 0 0
.....TCTTTTAAAACATAGACCGTT................................................................................................................................................................................................................................. 21 0 4 0.25 1 1 0 0 0
..............................................................................................................................................................................................................................CGACTGTCGTAGGACTGCTAGAA...... 23 1 4 0.25 1 1 0 0 0
..........................................................................................................................................................................................................................TCAACGACTGTCGTAATACTGCTAG........ 25 1 4 0.25 1 0 1 0 0
..............................................................................................................................................................................................................................CGACTGTCGTAAGACTGCTAGAAT..... 24 0 4 0.25 1 1 0 0 0
................................................................................................................................................................................................................................ACTGTCGTAAGACTGCTAGAATTACGT 27 0 4 0.25 1 1 0 0 0
..............................................................AGGAATAGCTACTGCAGCTTT........................................................................................................................................................................ 21 0 4 0.25 1 1 0 0 0
..................................................................................................................................................................................................................................TGTCGTAAGACTGCTAGAATTAC.. 23 0 4 0.25 1 1 0 0 0
.........................................................TGATTAGGAATAGCTACTGCAGCTT......................................................................................................................................................................... 25 1 4 0.25 1 0 1 0 0
.........................................................TGAGTAGGAATAGCTACT................................................................................................................................................................................ 18 0 5 0.20 1 1 0 0 0
........................................................TTGAGTAGGAATAGCTACT................................................................................................................................................................................ 19 0 5 0.20 1 1 0 0 0
......................................................................................................................................................ATACATGTATAAAACGTAAAGTTCTA........................................................................... 26 0 5 0.20 1 1 0 0 0
......................................................................................................................................................ATACATGTATAAAACGTAAAGTTCTAA.......................................................................... 27 0 5 0.20 1 1 0 0 0
............................................................................................................................................................GTATAAAACGTAAAGTTCTAA.......................................................................... 21 0 7 0.14 1 1 0 0 0
..........................................................................................................................................................ATGTATAAAACGTAAAGTTCTAA.......................................................................... 23 0 7 0.14 1 1 0 0 0
............................................................................................................GCGCGTACTTCCGGGTCTTCT.......................................................................................................................... 21 3 8 0.13 1 1 0 0 0
.......................................GGCGAACTCGCGGTAGGT.................................................................................................................................................................................................. 18 2 9 0.11 1 1 0 0 0
.....................................................................................................................TCCCGGTGTTGTCTCGGTCG.................................................................................................................. 20 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004830:657542-657792 + dwi_2248 CGTCCAGAAAATTTTGTATCTGGCAATTCCATTTGACTTCCCCTTGAGCTCCATCCAACTCATCCTTATCGATGACGTCGAAATTGTTTTTAAGAGCCTCCTTTATACCGTTTATGAAGGCCCAGAAGAGAGCCAGCGTACATACATATGTATGTACATATTTTGCATTTCAAGATTATATATCATTATGCTTCATTGCAGCTGATCAATTCTGATGAAGTTGCTGACAGCATTCTGACGATCTTAATGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CGTCCAGAAAATTTTGTATCTGGCAATTCCATTTGACTTCCCCTTGAGCTCCATCCAACTCATCCTTATCGATGACGTCGAAATTGTTTTTAAGAGCCTCCTTTATACCGTTTATGAAGGCCCAGAAGAGAGCCAGCGTACATACATATGTATGTACATATTTTGCATTTCAAGATTATATATCATTATGCTTCATTGCAGCTGATCAATTCTGATGAAGTTGCTGACAGCATTCTGACGATCTTAATGCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................TGCAGCTGATCAATTCTGATGAAGT..............................25111.0011000110
.............................................................................................................................................................................................................................TGCTGACAGCATTCTGACGATCTTA.....2541.75704030
.............................................................................................................................................................................................................................TGCTGACAGCATTCTGACGATCTTAA....2641.50604020
................................................................................................................................................................................................................................TGACAGCATTCTGACGATCTTAATG..2541.50606000
..........................TTCCATTTGACTTCCCCTTGAGCTCCA......................................................................................................................................................................................................2721.50302010
.......................................................................................................................................................................TTTCAAGATTATATATCATTATGCT...........................................................2531.33402020
.............................................................................................................................................................................................................................TGCTGACAGCATTCTGACGATCTTAATG..2841.25505000
...................................................................................................................................................................................................TTGCAGCTGATCAATTCTGATGAAGT..............................2611.00100010
................................................................................................................................................................................................................................TGACAGCATTCTGACGATCTTAAT...2441.00403010
.................ATCTGGCAATTCCATTTGACTTCCCCT...............................................................................................................................................................................................................2721.00202000
................................................................................................................................................................................................................ATTCTGATGAAGTTGCTGACAGCA...................2421.00202000
.............................................................................................................................................................................................................TCAATTCTGATGAAGTTGCTGACAGCA...................2711.00100010
............................................TGAGCTCCATCCAACTCATCCTTAT......................................................................................................................................................................................2521.00202000
................................................................................................................................................................................................................................TGACAGCATTCTGACGATC........1940.75301020
.........................................................................................................TACCGTTTATGAAGGCCCAGAAGAGAG.......................................................................................................................2730.67202000
.......................................................................................................................................................................TTTCAAGATTATATATCATTATGCTT..........................................................2630.67202000
................................................................................................................................................................................................................ATTCTGATGAAGTTGCTGACAGC....................2330.67202000
..............................................................................................................................AGAGAGCCAGCGTACATACATATGT....................................................................................................2530.67201010
...................................................................................TTGTTTTTAAGAGCCTCCTTTATACC..............................................................................................................................................2620.50101000
.............................................................................................................................................................................................................................TGCTGACAGCATTCTGACGATCTT......2440.50202000
...........................TCCATTTGACTTCCCCTTGAGCTCCA......................................................................................................................................................................................................2620.50101000
........................AATTCCATTTGACTTCCCCTTGAGC..........................................................................................................................................................................................................2520.50100010
................................................................................................................................................................................................................................TGACAGCATTCTGACGATCTTAATGC.2640.50202000
.................................TGACTTCCCCTTGAGCTCCATCCAT.................................................................................................................................................................................................2520.50101000
...............................................................................................................................GAGAGCCAGCGTACATACATATGTATGT................................................................................................2820.50100010
............................................TGAGCTCCATCCAACTCATCCTTATC.....................................................................................................................................................................................2620.50100010
................TATCTGGCAATTCCATTTGACTTCCCC................................................................................................................................................................................................................2720.50101000
....................TGGCAATTCCATTTGACTTCCCCT...............................................................................................................................................................................................................2420.50101000
.....................GGCAATTCCATTTGACTTCCCCTTGAGC..........................................................................................................................................................................................................2820.50101000
.......................CAATTCCATTTGACTTCCCCTTGAGC..........................................................................................................................................................................................................2620.50101000
..........................TTCCATTTGACTTCCCCTTGAGC..........................................................................................................................................................................................................2320.50101000
..........................TTCCATTTGACTTCCCCTTGAGCTC........................................................................................................................................................................................................2520.50101000
........................................................................TGACGTCGAAATTGTTTTTAAGAGCC.........................................................................................................................................................2620.50101000
................................................................................................................................................................................................................................TGACAGCATTCTGACGATCTTAA....2340.50202000
........................................................................TGACGTCGAAATTGTTTTTAAGAGC..........................................................................................................................................................2520.50101000
.............................................................................................................................................................................................................................TGCTGACAGCATTCTGACGATCT.......2340.50200020
.................................................................................................................................................................................................................TTCTGATGAAGTTGCTGACAGCA...................2320.50101000
...........TTTTGTATCTGGCAATTCCATTT.........................................................................................................................................................................................................................2320.50100010
................................................................................................................................................................................................................................TGACAGCATTCTGACGATCTTAATGCA2740.50202000
...........................TCCATTTGACTTCCCCTTGAGCTCCATC....................................................................................................................................................................................................2820.50101000
....................TGGCAATTCCATTTGACTTCCCCTTG.............................................................................................................................................................................................................2620.50101000
...............................TTTGACTTCCCCTTGAGCTCCATCCA..................................................................................................................................................................................................2620.50100010
............TTTGTATCTGGCAATTCCATTTGACT.....................................................................................................................................................................................................................2620.50101000
..........................TTCCATTTGACTTCCCCTTGAGCTCCAT.....................................................................................................................................................................................................2820.50101000
..............................................................................CGAAATTGTTTTTAAGAGCCTCCT.....................................................................................................................................................2420.50101000
........................................................................................................................................................TGTACATATTTTGCATTTCAAGAT...........................................................................2450.40201010
...........................................................................................................................AGAAGAGAGCCAGCGTACATACATATT.....................................................................................................2730.33100010
.......................................................................................................................................................................TTTCAAGATTATATATCATTATGC............................................................2430.33101000
.................................TGACTTCCCCTTGAGCTCCATC....................................................................................................................................................................................................2230.33101000
..........................................................................................TAAGAGCCTCCTTTATACCGTTTATGA......................................................................................................................................2730.33101000
.........................................................................................................TACCGTTTATGAAGGCCCAGAAGAGAGC......................................................................................................................2830.33101000
...............................................................................................................................GAGAGCCAGCGTACATACATATGT....................................................................................................2430.33100010
..........................................................................................................................CAGAAGAGAGCCAGCGTACATACATA.......................................................................................................2630.33101000
..................................................................................................TCCTTTATACCGTTTATGAAGGCCC................................................................................................................................2530.33101000
.......................................................................................................TATACCGTTTATGAAGGCCCAGAAGA..........................................................................................................................2630.33100010
.......................................................................................................TATACCGTTTATGAAGGCCCAGAAG...........................................................................................................................2530.33101000
..................................................................................................................................AGCCAGCGTACATACATATGT....................................................................................................2130.33100010
.........................................................................................................TACCGTTTATGAAGGCCCAGAAGA..........................................................................................................................2430.33101000
.....................................................................................................TTTATACCGTTTATGAAGGCCCAGAA............................................................................................................................2630.33101000
............................................................................................................................GAAGAGAGCCAGCGTACATACATATG.....................................................................................................2630.33100001
..............................................................................................................................AGAGAGCCAGCGTACATACATATGTA...................................................................................................2630.33100010
................................................................................................................................................................................................................................TGACAGCATTCTGACGATCTTAAA...2440.25101000
...............................................................................................................................................................................................................................CTGACAGCATTCTGACGATCT.......2140.25101000
............................................................CATCCTTATCGATGACGTCGA..........................................................................................................................................................................2140.25100100
...........................................................TCATCCTTATCGATGACGTCGAAA........................................................................................................................................................................2440.25101000
.............................................................................................................................................................................................................................TGCTGACAGCATTCTGACGATCTTAT....2640.25101000
.....................................................................................................................................................................................................................................GCATTCTGACGATCTTAATGC.2140.25101000
................................................................................................................................................................................................................................TGACAGCATTCTGACGATCTT......2140.25101000
..............................................................TCCTTATCGATGACGTCGAAA........................................................................................................................................................................2140.25101000
.................................................................................................................................................................................................................................GACAGCATTCTGACGATCT.......1940.25101000
................................................................................................................................................................................................................................TGACAGCATTCTGACGATCT.......2040.25101000
.................................................................................................................................................................................................................................GACAGCATTCTGACGATCTTAATGC.2540.25101000
................................................................................................................................................................................................................................TGACAGCATTCTGACGATCTTA.....2240.25101000
.................................................................................................................................................................................................................................GACAGCATTCTGACGATCTTAATGCA2640.25101000
......................................................................................................................................................TATGTACATATTTTGCATTTCAAGAT...........................................................................2650.20101000
......................................................................................................................................................TATGTACATATTTTGCATTTCAAGATTA.........................................................................2850.20101000
........................................................................................................................................................TGTACATATTTTGCATTTCAAGATTA.........................................................................2650.20100010
...............................................................................................................TTATGAAGGCCCAGAAGAGAGCC.....................................................................................................................2370.14100010
................................................................................................................TATGAAGGCCCAGAAGAGAGCCAG...................................................................................................................2470.14100100
...............................................................................................................TTATGAAGGCCCAGAAGAGAGC......................................................................................................................2270.14100010
................................................................................................................TATGAAGGCCCAGAAGAGAGCCG....................................................................................................................2370.14101000

Generated: 05/18/2015 at 03:44 AM