ID:

dwi_224

 Coordinate:

scf2_1100000001079:14554-14704 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.8 -5.5 -5.1

Flybase annnotation

CDS [Dwil\GK23634-cds]; exon [dwil_GLEANR_7506:1]; intron [Dwil\GK23634-in]

No Repeatable elements found

mature
  1. scf2_1100000001575:218-244 +
  2. dwi_224  scf2_1100000001079:14600-14626 -
  3. scf2_1100000002478:100-126 -
star
  1. dwi_224  scf2_1100000001079:14644-14668 -
  2. scf2_1100000002478:144-168 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGGTACACAGTACGAAGCTAAAAACAATGCCCCAAAAGAACTCAACGAATGTATGTATAACAGCACACACAAAGGCCTCTACATCGTATACATAGACAAATTTGATACAAATGCAAGTGAGTCGAAAATGAGAATACCAATAAATTCCCTAGAGCTAAACGCGGTGTTACTTAAGCTTAAAATAAAAGACATCCTAACGGTCAATAAAATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
**************************************************************************************........(((..(((((.........)))))..)))................................************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
................................................................................................................................TGAGAATACCAATAAATTCCCTAGAGC................................................................................................ 27 0 3 1.33 4 3 1
..........TACGAAGCTAAAAACAATGCCCCAAA....................................................................................................................................................................................................................... 26 0 2 1.00 2 2 0
...................................................................................................................................................CCTAGAGCTAAACGCGGTGTTACT................................................................................ 24 0 5 0.80 4 2 2
...................................................................................................................AGTGAGTCGAAAATGAGAATACCA................................................................................................................ 24 0 4 0.75 3 2 1
............................................................................................................................................TAAATTCCCTAGAGCTAAACGCGGTG..................................................................................... 26 0 3 0.67 2 2 0
.............................CCCCAAAAGAACTCAACGAATGTATG.................................................................................................................................................................................................... 26 0 3 0.67 2 2 0
.....................................................................................................................................................TAGAGCTAAACGCGGTGTTACTTAAGCT.......................................................................... 28 0 3 0.67 2 2 0
.............GAAGCTAAAAACAATGCCCCAAAAGAAC.................................................................................................................................................................................................................. 28 0 2 0.50 1 1 0
......................................................................................TATACATAGACAAATTTGATACAAA............................................................................................................................................ 25 0 2 0.50 1 1 0
......................................................................................................................................TACCAATAAATTCCCTAGAGCTAAA............................................................................................ 25 0 3 0.33 1 1 0
.................................................................................................................................GAGAATACCAATAAATTCCCTAGAGC................................................................................................ 26 0 3 0.33 1 1 0
..................TAAAAACAATGCCCCAAAAGAACTCAAC............................................................................................................................................................................................................. 28 0 3 0.33 1 1 0
......................AACAATGCCCCAAAAGAACTCAACGAATG........................................................................................................................................................................................................ 29 0 3 0.33 1 1 0
......................................................................................................................................TACCAATAAATTCCCTAGAGCTAAACG.......................................................................................... 27 0 3 0.33 1 1 0
.....................................................................................................................................ATACCAATAAATTCCCTAGAGC................................................................................................ 22 0 3 0.33 1 1 0
.....................................................................................................TTGATACAAATGCAAGTGAGTCGA.............................................................................................................................. 24 0 3 0.33 1 1 0
....................................................ATGTATAACAGCACACACAAAGGCC.............................................................................................................................................................................. 25 0 3 0.33 1 1 0
...................................................................................................ATTTGATACAAATGCAAGTGAGTCG............................................................................................................................... 25 0 3 0.33 1 1 0
.............................CCCCAAAAGAACTCAACGAATGTA...................................................................................................................................................................................................... 24 0 3 0.33 1 1 0
....................................................ATGTATAACAGCACACACAAAGGCA.............................................................................................................................................................................. 25 1 3 0.33 1 1 0
...............................................................................................................................................ATTCCCTAGAGCTAAACGCGGTGTTA.................................................................................. 26 0 3 0.33 1 1 0
.........................................TCAACGAATGTATGTATAACAGCACACAC..................................................................................................................................................................................... 29 0 3 0.33 1 1 0
.....................................................................................................................................ATACCAATAAATTCCCTAGAGCT............................................................................................... 23 0 3 0.33 1 1 0
.........................................................................................................TACAAATGCAAGTGAGTCGAAAATGA........................................................................................................................ 26 0 3 0.33 1 1 0
......................................................................................................................................TACCAATAAATTCCCTAGAGCT............................................................................................... 22 0 3 0.33 1 1 0
......................................AACTCAACGAATGTATGTATAACAGCACA........................................................................................................................................................................................ 29 0 3 0.33 1 1 0
...........................................................................................................................................................................TAAGCTTAAAATAAAAGACATCC......................................................... 23 0 3 0.33 1 1 0
...............................................................................TACATCGTATACATAGACAAATTTGA.................................................................................................................................................. 26 0 4 0.25 1 1 0
..............................................................................................................ATGCAAGTGAGTCGAAAATGAGAA..................................................................................................................... 24 0 4 0.25 1 1 0
................................................................................ACATCGTATACATAGACAAATTTGA.................................................................................................................................................. 25 0 4 0.25 1 1 0
..................................AAAGAACTCAACGAATGTATGTAT................................................................................................................................................................................................. 24 0 4 0.25 1 1 0
......................................AACTCAACGAATGTATGTATAAC.............................................................................................................................................................................................. 23 0 4 0.25 1 1 0
.....................................................................................................................TGAGTCGAAAATGAGAATACCAATAAAT.......................................................................................................... 28 0 4 0.25 1 1 0
..............................................................................................................ATGCAAGTGGGTCGAAAATGAGAA..................................................................................................................... 24 1 4 0.25 1 1 0
......................................................................................................................................................AGAGCTAAACGCGGTGTTACT................................................................................ 21 0 5 0.20 1 1 0
...................................................................................................................................................CCTAGAGCTAAACGCGGTGTTATC................................................................................ 24 2 5 0.20 1 1 0
...................................................................................................................................................CCTAGAGCTAAACGCGGTGTTAC................................................................................. 23 0 5 0.20 1 1 0
....................................................................................................................................................CTAGAGCTAAACGCGGTGTTAC................................................................................. 22 0 5 0.20 1 1 0
...................................................................................................................................................CCTAGAGCTAAACGCGGTGATACT................................................................................ 24 1 5 0.20 1 1 0

Anti-sense strand reads

GCCATGTGTCATGCTTCGATTTTTGTTACGGGGTTTTCTTGAGTTGCTTACATACATATTGTCGTGTGTGTTTCCGGAGATGTAGCATATGTATCTGTTTAAACTATGTTTACGTTCACTCAGCTTTTACTCTTATGGTTATTTAAGGGATCTCGATTTGCGCCACAATGAATTCGAATTTTATTTTCTGTAGGATTGCCAGTTATTTTATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
************************************************************************************************........(((..(((((.........)))))..)))................................************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V119
head
 V117
male body		 M020
head
..................................................................................................................................................GGGATCTCGATTTGCGCCACAATGAAT.............................................................................. 27 0 5 5.20 26 17 9 0 0 0
...................................................................................................................................................GGATCTCGATTTGCGCCACAATGAAT.............................................................................. 26 0 5 4.80 24 17 7 0 0 0
...................................................................................................................................CTTATGGTTATTTAAGGGATCTCGAT.............................................................................................. 26 0 3 3.00 9 2 7 0 0 0
....................................................................................................................................................GATCTCGATTTGCGCCACAATGAAT.............................................................................. 25 0 5 1.80 9 8 1 0 0 0
...................................................................................................................TCACTCAGCTTTTACTCTTATGGTTAT............................................................................................................. 27 0 4 1.75 7 5 2 0 0 0
..........................TACGGGGTTTTCTTGAGTTGCTTACAT...................................................................................................................................................................................................... 27 0 3 1.67 5 5 0 0 0 0
........................................................................................................................................................................................TTTCTGTAGGATTGCCAGTTATTTTAT........................................ 27 0 5 1.40 7 6 1 0 0 0
..........................................................................................................................................................GATTTGCGCCACAATGAATTCGAAT........................................................................ 25 0 3 1.33 4 2 0 2 0 0
...........................ACGGGGTTTTCTTGAGTTGCTTACAT...................................................................................................................................................................................................... 26 0 3 1.33 4 2 2 0 0 0
...................................................................................................................TCACTCAGCTTTTACTCTTATGGT................................................................................................................ 24 0 4 1.25 5 5 0 0 0 0
.....................................CTTGAGTTGCTTACATACATATTGT............................................................................................................................................................................................. 25 0 4 1.25 5 5 0 0 0 0
.......................................................................................................................TCAGCTTTTACTCTTATGGTTATTT........................................................................................................... 25 0 4 1.25 5 5 0 0 0 0
........................................................................................................................................................................................TTTCTGTAGGATTGCCAGTTATTT........................................... 24 0 5 1.20 6 5 0 0 0 1
.......................................TGAGTTGCTTACATACATATTGT............................................................................................................................................................................................. 23 0 4 1.00 4 3 1 0 0 0
.............................GGGGTTTTCTTGAGTTGCTTACAT...................................................................................................................................................................................................... 24 0 3 1.00 3 2 1 0 0 0
............................CGGGGTTTTCTTGAGTTGCTTACAT...................................................................................................................................................................................................... 25 0 3 1.00 3 0 2 0 1 0
.........................................................................................................................................................CGATTTGCGCCACAATGAATTCGAAT........................................................................ 26 0 3 1.00 3 1 2 0 0 0
...................................................................................................................TCACTCAGCTTTTACTCTTATGGTTATTT........................................................................................................... 29 0 4 1.00 4 3 1 0 0 0
...................................................................................................................TCACTCAGCTTTTACTCTTATGGTTA.............................................................................................................. 26 0 4 1.00 4 4 0 0 0 0
...................................TTCTTGAGTTGCTTACATACATATTGT............................................................................................................................................................................................. 27 0 4 1.00 4 4 0 0 0 0
...................................................................................................................................CTTATGGTTATTTAAGGGATCTCGATT............................................................................................. 27 0 3 1.00 3 0 3 0 0 0
........................................................................................................................CAGCTTTTACTCTTATGGTTATTT........................................................................................................... 24 0 4 0.75 3 1 2 0 0 0
....................................................................................................................CACTCAGCTTTTACTCTTATGGTTAT............................................................................................................. 26 0 4 0.75 3 3 0 0 0 0
....................TTTTGTTACGGGGTTTTCTTGAGT............................................................................................................................................................................................................... 24 0 3 0.67 2 2 0 0 0 0
..................................................................................................................................TCTTATGGTTATTTAAGGGATCTCGAT.............................................................................................. 27 0 3 0.67 2 0 1 1 0 0
.......................................TGAGTTGCTTACATACATATTGTCGT.......................................................................................................................................................................................... 26 0 3 0.67 2 2 0 0 0 0
..............................GGGTTTTCTTGAGTTGCTTACATA..................................................................................................................................................................................................... 24 0 3 0.67 2 2 0 0 0 0
....................................................................................................AAACTATGTTTACGTTCACTCAGCTTT............................................................................................................................ 27 0 3 0.67 2 2 0 0 0 0
..............................................................................................................................................TTAAGGGATCTCGATTTGCGCCACAAT.................................................................................. 27 0 3 0.67 2 1 1 0 0 0
.............................................................................................................................................................TTGCGCCACAATGAATTCGAATTTTAT................................................................... 27 0 3 0.67 2 0 2 0 0 0
...................................................................................................TAAACTATGTTTACGTTCACTCAGCT.............................................................................................................................. 26 0 3 0.67 2 2 0 0 0 0
.................................................................................................................................................AGGGATCTCGATTTGCGCCACAATGAAT.............................................................................. 28 0 3 0.67 2 2 0 0 0 0
......................................................................................................................CTCAGCTTTTACTCTTATGGTTATTT........................................................................................................... 26 0 4 0.50 2 2 0 0 0 0
GCCATGTGTCATGCTTCGATTTTT................................................................................................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0
............GCTTCGATTTTTGTTACGGGGTTTTCT.................................................................................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0 0
..................................TTTCTTGAGTTGCTTACATACATAT................................................................................................................................................................................................ 25 0 4 0.50 2 2 0 0 0 0
GCCATGTGTCATGCTTCGATTTTTGT................................................................................................................................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0
..........................................................................................GTATCTGTTTAAGCTATGTTTACG......................................................................................................................................... 24 1 2 0.50 1 1 0 0 0 0
....................................................................................................................CACTCAGCTTTTACTCTTATGGTTATT............................................................................................................ 27 0 4 0.50 2 2 0 0 0 0
GCCATTTGTCATGCTTCGATTTTTGT................................................................................................................................................................................................................................. 26 1 2 0.50 1 1 0 0 0 0
...................................................................................................................TCACTCAGCTTTTACTCTTATGGTTATT............................................................................................................ 28 0 4 0.50 2 2 0 0 0 0
................CGATTTTTGTTACGGGGTTTTCTTGAGT............................................................................................................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0
........................................................................................ATGTATCTGTTTAGACTATGTTTACGT........................................................................................................................................ 27 1 2 0.50 1 0 1 0 0 0
...................................................................................................................................................GGATCTCGATTTGCGCCACAATGAA............................................................................... 25 0 5 0.40 2 2 0 0 0 0
....................................................................................................................................................GATCTCGATTTGCGCCACTATGAAT.............................................................................. 25 1 5 0.40 2 0 2 0 0 0
.............................................................................................................TTATGTTCACTCAGCTTTTACTCTTAT................................................................................................................... 27 1 3 0.33 1 1 0 0 0 0
...................................................................................................................................CTTATGTTTATTTAAGGGATCTCGATT............................................................................................. 27 1 3 0.33 1 0 1 0 0 0
..............................GGGTTTTCTTGAGTTGCTTACAT...................................................................................................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0
............................................................................................................................................................TTTGCGCCACAATGAATTCGAATTTTAT................................................................... 28 0 3 0.33 1 1 0 0 0 0
........................................GAGTTGCTTACATACATATTGTCGT.......................................................................................................................................................................................... 25 0 3 0.33 1 0 1 0 0 0
...................................................................................................................................................GGATCTCGATTTGCGCCACAATGAATT............................................................................. 27 0 3 0.33 1 0 1 0 0 0
.....................................................................................................................................................................................TATTTTCTGTAGGATTGCCAGTTATTT........................................... 27 0 3 0.33 1 1 0 0 0 0
...........................................................................................................................................................ATTTGCGCCACAATGAATTCGAAT........................................................................ 24 0 3 0.33 1 0 1 0 0 0
.................................................................................................................GTTCACTCAGCTTTTACTCTTATGGT................................................................................................................ 26 0 3 0.33 1 1 0 0 0 0
..............................................................................................................TACGTTCACTCAGCTTTTACTCTTATGGT................................................................................................................ 29 0 3 0.33 1 1 0 0 0 0
..................................................................................................................................TCTTATGGTTATTTAAGGGATCTCGA............................................................................................... 26 0 3 0.33 1 0 1 0 0 0
.............................................................................................................................................................TTGCGCCACAATGAATTCGAATTT...................................................................... 24 0 3 0.33 1 1 0 0 0 0
.............................GGGGTTTTCTTGAGTTGCTTACATACAT.................................................................................................................................................................................................. 28 0 3 0.33 1 1 0 0 0 0
...........................................................................................................................................TATTTAAGGGATCTCGATTTGCGC........................................................................................ 24 0 3 0.33 1 0 1 0 0 0
........................................................................................................................................GGTTATTTAAGGGATCTCGATTT............................................................................................ 23 0 3 0.33 1 1 0 0 0 0
...................TTTTTGTTACGGGGTTTTCTTGAGT............................................................................................................................................................................................................... 25 0 3 0.33 1 1 0 0 0 0
..................ATTTTTGTTACGGGGTTTTCTTGAGT............................................................................................................................................................................................................... 26 0 3 0.33 1 1 0 0 0 0
..................................................................................................................................TCTTATGGTTATTTAAGGGATCTCGATT............................................................................................. 28 0 3 0.33 1 0 1 0 0 0
..........................................................................................................................................................GATTTGCGCCACAATGAATTCGAATTT...................................................................... 27 0 3 0.33 1 0 1 0 0 0
..............................................................................................................................................TTAAGGGATCTCGATTTGCGCCACA.................................................................................... 25 0 3 0.33 1 1 0 0 0 0
.........................................................................................................ATGTTTACGTTCACTCAGCTTTTACTCTT..................................................................................................................... 29 0 3 0.33 1 1 0 0 0 0
......................................................................................................ACTATGTTTACGTTCACTCAGCTT............................................................................................................................. 24 0 3 0.33 1 1 0 0 0 0
.............................GGGGTTTTCTTGAGTTGCTTACA....................................................................................................................................................................................................... 23 0 3 0.33 1 1 0 0 0 0
..................................................................................................TTAAACTATGTTTACGTTCACTCAGCT.............................................................................................................................. 27 0 3 0.33 1 1 0 0 0 0
...................................................................................................................................................................................TTTATTTTCTGTAGGATTGCCAGTTAT............................................. 27 0 3 0.33 1 1 0 0 0 0
..............................................................................................................TATGTTCACTCAGCTTTTACTCTTAT................................................................................................................... 26 1 3 0.33 1 1 0 0 0 0
.............................................................................................................TTACGTTCACTCAGCTTTTACTCTTAT................................................................................................................... 27 0 3 0.33 1 1 0 0 0 0
....................................TCTTGAGTTGCTTACATACATATTGT............................................................................................................................................................................................. 26 0 4 0.25 1 1 0 0 0 0
...........................................................................................................GTTTACGTTCACTCAGCTTTTTCTCTT..................................................................................................................... 27 1 4 0.25 1 0 1 0 0 0
.......................................................................................................................TCAGCTTTTACTCTTATGGTTAT............................................................................................................. 23 0 4 0.25 1 1 0 0 0 0
.................................TTTTCTTGAGTTGCTTACATACATAT................................................................................................................................................................................................ 26 0 4 0.25 1 1 0 0 0 0
....................................................................................................................................CTTAGGTTATTTAAGGGATCTCGAT.............................................................................................. 25 3 4 0.25 1 0 0 1 0 0
....................................................................................................................CACTCAGCTTTTACTCTTATGGTTATTT........................................................................................................... 28 0 4 0.25 1 1 0 0 0 0
..................................TTTCTTGAGTTGCTTACATACAT.................................................................................................................................................................................................. 23 0 4 0.25 1 1 0 0 0 0
.....................................................................................................................................TAAGGTTATTTAAGGGATCTCGAT.............................................................................................. 24 1 4 0.25 1 1 0 0 0 0
......................................................................................................................CTCAGCTTTTACTCTTATGGTTATTTT.......................................................................................................... 27 1 4 0.25 1 1 0 0 0 0
...................................................................................................................TCACTCAGCTTTTACTCTTATGGTT............................................................................................................... 25 0 4 0.25 1 1 0 0 0 0
.............................................................................................................TTACGTTCACTCAGCTTTTACTCT...................................................................................................................... 24 0 4 0.25 1 1 0 0 0 0
.............................................................................................................TTACGTTCACCCAGCTTTTACTCTT..................................................................................................................... 25 1 4 0.25 1 1 0 0 0 0
..................................................................................................................................................AGGATCTCGATTTGCGCCACAATGAAT.............................................................................. 27 1 5 0.20 1 1 0 0 0 0
...................................................................................................................TCACTCAGCTTTTACTCTTA.................................................................................................................... 20 0 5 0.20 1 1 0 0 0 0
..........................................................................................................................................................................................TCTGTAGGATTGCCAGTTATTTTAT........................................ 25 0 5 0.20 1 1 0 0 0 0
..................................................................................................................................................GGGATCTCGATTTGCGCCACGATGAAT.............................................................................. 27 1 5 0.20 1 0 1 0 0 0
........................................................................................................................................................................................TTTCTGTAGGATTGCCAGTTAT............................................. 22 0 5 0.20 1 0 1 0 0 0
..................................................................................................................................................GGGATCTCGATTTGCGCCACAATGAA............................................................................... 26 0 5 0.20 1 1 0 0 0 0
........................................................................................................................................................................................TTTCTGTAGGATTGCCAGTTA.............................................. 21 0 5 0.20 1 1 0 0 0 0
..................................................................................................................TTCACTCAGCTTTTACTCTT..................................................................................................................... 20 0 5 0.20 1 1 0 0 0 0
.........................................................................................................................................................CGATTTGCGCCACAATGAAT.............................................................................. 20 0 5 0.20 1 1 0 0 0 0
...................................................................................................................................................GGATCTCGATTTACGCCACAATGAAT.............................................................................. 26 1 5 0.20 1 1 0 0 0 0
........................................................................................................................................................................................TTTCTGTAGGATTGCCAGTTATTTTA......................................... 26 0 5 0.20 1 1 0 0 0 0
..................................................................................................................................................ATGATCTCGATTTGCGCCACTATGAAT.............................................................................. 27 3 5 0.20 1 1 0 0 0 0
...........................................................................................................................................................................................CTGTAGGATTGCCAGTTAT............................................. 19 0 5 0.20 1 1 0 0 0 0
................................................................TGGATGGTTCCGGAGATGT........................................................................................................................................................................ 19 3 6 0.17 1 0 0 0 1 0
.........................................................................CCGGTGATGGAGCATACGT............................................................................................................................................................... 19 3 12 0.08 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000001079:14504-14754 - dwi_224 CGGTACA---C---------A--------------------GTACGAAGCTAAAAACAATGCCC---CAAAAGAACTCAACGAATGTAT------------------------GTATAACAGCACACACAAAGGCCTCTACATCGTATACATAGACAAATTTGATACA------AATGCAAGTGAGTC------GAAAATGAGAATACCAATAAATTCCCTAGAGCTAAACGCGG----TGTTACTTAAGCTTAAAATAAAAGACATCCTAACGGTCAATAAAATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
droVir3 scaffold_12855:10122585-10122738 + TACATCA---C---------A--------------------A----------------------------------------------------------------------------------TACGAGAAGAACTTTGTACTTGATGCATAAACTAACTTAATAAA------AATGCTTATAAATA------TAAAATAATTGCTTAGCTAAATTCCCGA--TATATGCCCGATTAATTGTAAGCA-ACTTAAAACTAACGACTCTA----ACTTAATAAAATAG---------------------------------------
dp5 Unknown_singleton_2303:66-227 + AAATCAT-------------------------------------------------------------------------CGTTAATAA------------------------GTATTATGAGGGGCATAAAGGCCCATACATTGTTTGTATCGACAAAATGAGTGCG------AATAATGC------------------CAGAATTGCTATTAATCAGTTTGATCTATCCGACC----TGCTGCTGAAACAGGACATTAGCGATATCGAGGAGGTTGCTAGAATGG---------------------------------------
droPer2 scaffold_132:76869-77001 - C------------------------------------------------------------------------------------------------------------------------------ATAAAGGCCCATACATTGTTTGTATCGACAAAATGAGTGCG------AATAATGC------------------CAGAATTGCTATAAACCAGTTTGATCTATCCGATC----TGCTGCTGAAACAGGGCATTAGCGATATCGAGGAGGTTGCTAGGATGG---------------------------------------
droAna3 scaffold_13228:265747-265976 + CCTGCTCCA-C--AGACCAATTTT-AACGACCCGGACTTTC--------ACATTGACAACGATATTTCCGA------------------TACTCCAAAGCAAGTACCGTTGACATATAATAAAAGTCATAAAAGGCCATACATCGTCTATATTGACAAACACCCTAATGAA---G------ACGA---GAA---------CCGAAAACCCACAAATGCTTTAGAACTGAATGCTT----CAATTTTTAAGCTTAAACTTAATGACATTGTTAAAGTAAATAAAAT-----------------------------------------
droBip1 scf7180000395631:11919-12124 + CGACGAT--------------------------------------------------------------GATAACGA---CAGTTCCTCCAAACCGCAGCAAGTACCTCTTAGCTATAAGAGCAATCACAAAGGACCTTATATTGTTTATATTGACAAACTCACTAACGGTGAAAGTAATAGAGA---AAACC---------GGGAACCTATTAATGCGCTTGAATTAAACGCAT----CCATTTTTAAGCTTAAAATCAAAGATATTTTAAAAGTCAATAAAATAG---------------------------------------
droKik1 scf7180000302660:215540-215646 - CAACACC---A---------A--------------------AA---ACAACAATAAAAACAAAAATGCTAAAAACAA---CA------------------------------------------------------------------------ACAATAGTACCAAA------AACAACAACAA---CAACAG-------------------------------------------------------------CAGTATCAAAAACAACAACAACACAAATTCAA---------------------------------------
droFic1 scf7180000452679:13792-14009 + CGAAGAG--GCAGTAA----G--------------------AA---ATGAGGATGTAAGCGAGAAAACTGAAAATAA---CGGGTTCCT------------------------ATACCACAGCTCCCACAAAGGTCCGTTTGTGGTATATATTGACAAAGCGATTGAA------ACAAACACAGA---CAACCGTCATAATAGAGTACCAATCAACCCACTGGAGTTGAATGCGG----TTTTGCTTAAGTTAAAAATCAAAGATATAATTTCTGTCAATAAAATAG---------------------------------------
droEle1 scf7180000490104:66076-66129 - TAATGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAACAG----TATTAACTGAGCTTAAAATAGAAG---------TAACTGAGCGATCAA---------------------------------------
droRho1 scf7180000775011:1342-1561 + TGGTAAA--ATAATAACGAACATT-ACTAACAA--------AGAGGAAAAGAAGGAAAATGGAAATTTCAATAACGG---CGAGTACTC------------------------ATACAGCA-------------GCCCTTTGTCGTCTATATAGACAAAATTGGCGAA------AACAATGGCGA---AAACCGACCTAATAGAGTACCAATAAATCTTCTAGAATTAAATGCGG----TTTTATTAA-AATAAAAATAAAAGACATTACCTCAGTGAATAAGAT-----------------------------------------
droBia1 scf7180000302377:6491-6703 - TGCTAGA---A---------A--------------------AGAAGAGAAGAGAAAAAGTGGAAATTTGGAAAACAA---CGGATACTC------------------------GTACAGCAGCGCTCACAAGGGACCCTTTGTGGTCTACATAGACAAAATTGGTGAA------ACCAATGGCGA---AAATCGACCTAGAAGAGTTCCTATAAATCCTCTTGAACTAAATGCTG----TCTTGCTAAAATTAAATATTAAAGATATAACTTCAGTAAATAAGAT-----------------------------------------
droTak1 scf7180000415800:4574-4780 + CAAAGAA--------------------------------------GAGAAGAGGGAAAACGGAAATTTGGAAAACAA---CGGTTACTC------------------------GTATAGCAGTACACACAAGGTACCTTTTGTGGTCTACATAGACAAAATTGGTGAA------AACTATGGCGA---GGATCGTCCTAAAAGAGTTCCTATAAACCCCCTTGAATTAAATGCTG----TTCTGTTAAAATTAAACATTAAAGATATTATTTCCGTAAAGAAGAT-----------------------------------------
droEug1 scf7180000409801:564543-564793 + CAGTAAAAG-C--CAACCAAAAGAAGGAGATCAAGTAAATG--------ACATTGCCAGCAA-----TAAGGGAAAGCAATTTATGCAG---GTATTTGAACCTATTTTTTACCCC-----CCAACCAAAAAGGACCGTTTATAGTGTATATTGACAAAATGACAGAA------AATGGTGATAACTACAACAGACATAATAGAGCACCAATAAATGCTTTAGAGCTTAATGTAG----TTCTGTTTAACCTCAAATTGAAAGACATAGTAAAAGTAAACAAAAT-----------------------------------------
droYak3 v2_chrUn_004:615086-615132 - G-----------------------------------------------------------------------------------------------------------------TATAATAAGAATCACAAAGGCCTATTCATTGTCGGCATAGACAAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CGGTACA---C---------A--------------------GTACGAAGCTAAAAACAATGCCC---CAAAAGAACTCAACGAATGTAT------------------------GTATAACAGCACACACAAAGGCCTCTACATCGTATACATAGACAAATTTGATACA------AATGCAAGTGAGTC------GAAAATGAGAATACCAATAAATTCCCTAGAGCTAAACGCGG----TGTTACTTAAGCTTAAAATAAAAGACATCCTAACGGTCAATAAAATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................TGAGAATACCAATAAATTCCCTAGAGC....................................................................................................2731.33403010
..........................................TACGAAGCTAAAAACAATGCCC---CAAA...............................................................................................................................................................................................................................................................2621.00202000
..........................................................................................................................................................................................................................CCTAGAGCTAAACGCGG----TGTTACT................................................................................2450.80402020
....................................................................................................................................................................................AGTGAGTC------GAAAATGAGAATACCA....................................................................................................................2440.75302010
...................................................................................................................................................................................................................TAAATTCCCTAGAGCTAAACGCGG----TG.....................................................................................2630.67202000
.............................................................CCC---CAAAAGAACTCAACGAATGTAT------------------------G....................................................................................................................................................................................................................2630.67202000
............................................................................................................................................................................................................................TAGAGCTAAACGCGG----TGTTACTTAAGCT..........................................................................2830.67202000
.............................................GAAGCTAAAAACAATGCCC---CAAAAGAAC..........................................................................................................................................................................................................................................................2820.50101000
.................................................................................................................................................TATACATAGACAAATTTGATACA------AA......................................................................................................................................................2520.50101000
.............................................................................................................................................................................................................TACCAATAAATTCCCTAGAGCTAAA................................................................................................2530.33101000
........................................................................................................................................................................................................GAGAATACCAATAAATTCCCTAGAGC....................................................................................................2630.33101000
..................................................TAAAAACAATGCCC---CAAAAGAACTCAAC.....................................................................................................................................................................................................................................................2830.33101000
......................................................AACAATGCCC---CAAAAGAACTCAACGAATG................................................................................................................................................................................................................................................2930.33101000
.............................................................................................................................................................................................................TACCAATAAATTCCCTAGAGCTAAACG..............................................................................................2730.33101000
............................................................................................................................................................................................................ATACCAATAAATTCCCTAGAGC....................................................................................................2230.33101000
................................................................................................................................................................TTGATACA------AATGCAAGTGAGTC------GA..................................................................................................................................2430.33101000
.......................................................................................AT------------------------GTATAACAGCACACACAAAGGCC..............................................................................................................................................................................................2530.33101000
..............................................................................................................................................................ATTTGATACA------AATGCAAGTGAGTC------G...................................................................................................................................2530.33101000
.............................................................CCC---CAAAAGAACTCAACGAATGTA..............................................................................................................................................................................................................................................2430.33101000
.......................................................................................AT------------------------GTATAACAGCACACACAAAGGCA..............................................................................................................................................................................................2530.33101000
......................................................................................................................................................................................................................ATTCCCTAGAGCTAAACGCGG----TGTTA..................................................................................2630.33101000
............................................................................TCAACGAATGTAT------------------------GTATAACAGCACACAC.....................................................................................................................................................................................................2930.33101000
............................................................................................................................................................................................................ATACCAATAAATTCCCTAGAGCT...................................................................................................2330.33101000
....................................................................................................................................................................TACA------AATGCAAGTGAGTC------GAAAATGA............................................................................................................................2630.33101000
.............................................................................................................................................................................................................TACCAATAAATTCCCTAGAGCT...................................................................................................2230.33101000
.........................................................................AACTCAACGAATGTAT------------------------GTATAACAGCACA........................................................................................................................................................................................................2930.33101000
......................................................................................................................................................................................................................................................TAAGCTTAAAATAAAAGACATCC.........................................................2330.33101000
..........................................................................................................................................TACATCGTATACATAGACAAATTTGA..................................................................................................................................................................2640.25101000
...............................................................................................................................................................................ATGCAAGTGAGTC------GAAAATGAGAA.........................................................................................................................2440.25101000
...........................................................................................................................................ACATCGTATACATAGACAAATTTGA..................................................................................................................................................................2540.25101000
.....................................................................AAAGAACTCAACGAATGTAT------------------------GTAT.................................................................................................................................................................................................................2440.25101000
.........................................................................AACTCAACGAATGTAT------------------------GTATAAC..............................................................................................................................................................................................................2340.25101000
......................................................................................................................................................................................TGAGTC------GAAAATGAGAATACCAATAAAT..............................................................................................................2840.25101000
.............................................................................................................................................................................................................................AGAGCTAAACGCGG----TGTTACT................................................................................2150.20101000
..........................................................................................................................................................................................................................CCTAGAGCTAAACGCGG----TGTTATC................................................................................2450.20101000
..........................................................................................................................................................................................................................CCTAGAGCTAAACGCGG----TGTTAC.................................................................................2350.20101000
...........................................................................................................................................................................................................................CTAGAGCTAAACGCGG----TGTTAC.................................................................................2250.20101000
droVir3
TACATCA---C---------A--------------------A----------------------------------------------------------------------------------TACGAGAAGAACTTTGTACTTGATGCATAAACTAACTTAATAAA------AATGCTTATAAATA------TAAAATAATTGCTTAGCTAAATTCCCGA--TATATGCCCGATTAATTGTAAGCA-ACTTAAAACTAACGACTCTA----ACTTAATAAAATAG---------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................ACGAGAAGAACTTTGTACTTGATG.................................................................................................................................................................................2412.002101000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................CTTAGCTAAATTCCCGA--TATATGCCCGAT..........................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TACGAGAAGAACTTTGTACTTGATGCA...............................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................ACGAGAAGAACTTTGTACTTG....................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TACGAGAAGAACTTTGTACTTGATGC................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................ACGAGAAGAACTTTGTACTTGA...................................................................................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................ACGAGAAGAACTTTGTACTTGATGC................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................CTTAGCTAAATTCCCGA--TATATGCC..............................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................ACGAGAAGAACTTTGTACTTGATGCA...............................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................ACTTGATGCATAAACTAACTTAATAA...............................................................................................................................................................2611.001000000000000000000000000000000100000000000000000000000000000000
..............................................................................................................................CGAGAAGAACTTTGTACTTGATGCATC.............................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................ACGAGAAGAACTTTGTACTTGATGCAA..............................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................TAAATTCCCGA--TATATGCCCGATTAATTG....................................................................................2930.331001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................TAAATTCCCGA--TATATGCCCGA...........................................................................................2230.331000000000100000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TAAA------AATGCTTATAAATA------TAAAATAA............................................................................................................................2670.141001000000000000000000000000000000000000000000000000000000000000
dp5
AAATCAT-------------------------------------------------------------------------CGTTAATAA------------------------GTATTATGAGGGGCATAAAGGCCCATACATTGTTTGTATCGACAAAATGAGTGCG------AATAATGC------------------CAGAATTGCTATTAATCAGTTTGATCTATCCGACC----TGCTGCTGAAACAGGACATTAGCGATATCGAGGAGGTTGCTAGAATGG---------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................TGAGTGCG------AATAATGC------------------CAGAATTGC.....................................................................................................................251110.821190911301200030
................................................................................................................................................................TGAGTGCG------AATAATGC------------------CAGAATTG......................................................................................................................24118.649509100202000
........................................................................................................................................................................................................................................................................TATCGAGGAGGTTGCTAGAATGG---------------------------------------2354.20210700210650
.............................................................................................................................................................AAATGAGTGCG------AATAATGC------------------CAGAAT........................................................................................................................25114.1846050000020210
................................................................................................................................................................TGAGTGCG------AATAATGC------------------CAGAATTGCTA...................................................................................................................27111.912101530102000
................................................................................................................................................................TGAGTGCG------AATAATGC------------------CAGAATT.......................................................................................................................23111.731901800100000
.................................................................................................................................................................GAGTGCG------AATAATGC------------------CAGAATTGC.....................................................................................................................24111.551701410200000
.................................................................................................................................................................GAGTGCG------AATAATGC------------------CAGAATTG......................................................................................................................23111.551701600100000
....................................................................................................................................................................................................................TAATCAGTTTGATCTATCCGACC----TGC....................................................................................2621.5030000000030
..........................................................................................................................................TACATTGTTTGTATCGACAAAATGAG..................................................................................................................................................................26121.42170100000790
................................................................................................................................................................TGAGTGCG------AATAATGC------------------CAGAATTGCT....................................................................................................................26111.361501210002000
...............................................................................................................................................TGTTTGTATCGACAAAATGAGTGC...............................................................................................................................................................24121.25150710003220
................................................................................................................................................................TGAGTGCG------AATAATGC------------------CAGAATTGCA....................................................................................................................26111.181301300000000
......................................................................................TAA------------------------GTATTATGAGGGGCATAAAG.................................................................................................................................................................................................2321.0020000000020
..........................................................................................................................................................................................................................................................CAGGACATTAGCGATATCGAGGAGGT..................................................2621.0020000000020
................................................................................................................................................................................................................................................................ATTAGCGATATCGAGGAGGTTGC...............................................2391.0090900000000
.........................................................................................................................................................................................................................................................................ATCGAGGAGGTTGCTAGAATGG---------------------------------------2250.8040200000020
..................................................................................................................................................................................................................................................................TAGCGATATCGAGGAGGTTGCTAGA...........................................2550.8040100001200
...............................................................................................................................................TGTTTGTATCGACAAAATGAGTGCG------AA......................................................................................................................................................27120.6780300004100
........................................................................................................................................................................................................................................................................TATCGAGGAGGTTGCTAGAATG........................................2250.6030300000000
.................................................................................................................................................................................................................................................................TTAGCGATATCGAGGAGGTTGCTAG............................................2570.5740100000030
..................................................................................................................................................................................................................................................................TAGCGATATCGAGGAGGTTGCTA.............................................2370.5740200000200
.........................................................................................................................................................GACAAAATGAGTGCG------AATAATGC------------------..............................................................................................................................23110.5560510000000
.......................................................................................................................................................................................................................TCAGTTTGATCTATCCGACC----TGCTGC.................................................................................2620.5010000000010
...................................................................................TAATAA------------------------GTATTATGAGGGGCATAAA..................................................................................................................................................................................................2520.5010000001000
.AATCAT-------------------------------------------------------------------------CGTTAATAA------------------------GTATTATGAGG..........................................................................................................................................................................................................2640.5020000000020
...................................................................................TAATAA------------------------GTATTATGAGGGGCATAA...................................................................................................................................................................................................2420.5010000000010
...................................................................................TAATAA------------------------GTATTATGAGGGGCATAAAA.................................................................................................................................................................................................2620.5010000000010
................................................................................................................................................................................................................................................................ATTAGCGATATCGAGGAGGTTG................................................22100.5050500000000
................................................................................................................................................................TGAGTGCG------AATAATGC------------------CAGAAT........................................................................................................................22110.4550500000000
.................................................................................................................................................................GAGTGCG------AATAATGC------------------CAGAATTGCTA...................................................................................................................26110.4550300001010
.................................................................................................................................................................................................................................................................TTAGCGATATCGAGGAGGTTGC...............................................2290.4440200002000
.............................................................................................................................................................AAATGAGTGCG------AATAATGC------------------CAGAA.........................................................................................................................24120.4250000000500
......................................................................................................................................................................................................................................................................GATATCGAGGAGGTTGCTAGAATG........................................2450.4020000000200
...........................................................................................................................................................CAAAATGAGTGCG------AATAATGC------------------CAGAAT........................................................................................................................27110.3640000000040
..................................................................................................................................................TTGTATCGACAAAATGAGTGCG------AATAA...................................................................................................................................................27110.3640000000130
..........................................................................................................................................................................................................................................................................TCGAGGAGGTTGCTAGAATGG---------------------------------------2160.3320200000000
...............................................................................................................................................TGTTTGTATCGACAAAATGAG..................................................................................................................................................................21120.3340000000220
..................................................................................................................TATTATGAGGGGCATAAAGGCC..............................................................................................................................................................................................2230.3310010000000
.....................................................................................................................................................................................................................................................................CGATATCGAGGAGGTTGCTAG............................................2170.2920000000200
..................................................................................................................................................TTGTATCGACAAAATGAGTGCG------AAT.....................................................................................................................................................25110.2730200000010
............................................................................................................................................................AAAATGAGTGCG------AATAATGC------------------CAGAAT........................................................................................................................26110.2730000000300
.................................................................................................................................................................GAGTGCG------AATAATGC------------------CAGAAT........................................................................................................................21110.2730000000300
.................................................................................................................................................................GAGTGCG------AATAATGC------------------CAGAATTGCT....................................................................................................................25110.2730300000000
.....................................................................................................................................................TATCGACAAAATGAGTGCG------AAT.....................................................................................................................................................22110.2730300000000
..................................................................................................................................................................AGTGCG------AATAATGC------------------CAGAATTGC.....................................................................................................................23110.2730300000000
................................................................................................................................................................TGAGTGCG------AATAATGC------------------CAGAATTGCTAT..................................................................................................................28110.2730200001000
..............................................................................................................................................TTGTTTGTATCGACAAAATGAGTGCG------........................................................................................................................................................26120.2530100101000
...............................................................................................................................................TGTTTGTATCGACAAAATGAGTGCG------A.......................................................................................................................................................26120.2530300000000
.......................................................................................AA------------------------GTATTATGAGGGGCATAAAGGC...............................................................................................................................................................................................2440.2510000001000
.......................................................................................AA------------------------GTATTATGAGGGGCATAAAA.................................................................................................................................................................................................2280.2520000000200
............................................................................................................................................................AAAATGAGTGCG------AATAATGC------------------CAGAA.........................................................................................................................25120.2530000000030
......T-------------------------------------------------------------------------CGTTAATAA------------------------GTATTATGAGGGG........................................................................................................................................................................................................2340.2510000001000
..................................................................................................................TATTATGAGGGGCATAAAGG................................................................................................................................................................................................2080.2520100010000
...................................................................................................................................................................................................................................................................AGCGATATCGAGGAGGTTGC...............................................2090.2220200000000
.................................................................................................................................................................................................................................................................TTAGCGATATCGAGGAGGTTGCT..............................................2390.2220200000000
.................................................................................................................................................................................................................................................................TTAGCGATATCGAGGAGGTTG................................................21100.2020200000000
................................................................................................................................................................................................................................................................ATTAGCGATATCGAGGAGG...................................................19100.2020200000000
.......................................................................................................................................................................................................................................................................ATATCGAGGAGGTTGCTAGAATGG---------------------------------------2450.2010000000100
.....................................................................................................................................................................................................................................................................CGATATCGAGGAGGTTGCTAGAA..........................................2350.2010000000010
...............................................................................................................................................................................................................................................................CATTAGCGATATCGAGGAGGTTG................................................23100.2020000110000
......................................................................................................................................................................................................................................................................GATATCGAGGAGGTTGCTAGAATGG---------------------------------------2550.2010000000010
.....................................................................................................................................................TATCGACAAAATGAGTGCG------AATAA...................................................................................................................................................24110.1820200000000
.....................................................................................................................................................TATCGACAAAATGAGTGCG------AATA....................................................................................................................................................23110.1820200000000
.........................................................................................................................................................GACAAAATGAGTGCG------AATAATGC------------------CA............................................................................................................................25110.1820200000000
...................................................................................................................................................................GTGCG------AATAATGC------------------CAGAATTG......................................................................................................................21110.1820200000000
.......................................................................................................................................................TCGACAAAATGAGTGCG------AATAATGC------------------C.............................................................................................................................26110.1820100000100
.........................................................................................................................................................GACAAAATGAGTGCG------AATAATGC------------------CAG...........................................................................................................................26110.1820200000000
........................................................................................................................................................................................................................................................................TATCGAGGAGGTTGCTAGAAT.........................................2160.1710100000000
............................................................................................................................................................................................................................................................................GAGGAGGTTGCTAGAATGG---------------------------------------1960.1710000000010
........................................................................................................................................................................................................................................................................TATCGAGGAGGTTGCTAGAAA.........................................2160.1710100000000
........................................................................................................................................................................................................................................................................TATCGAGGAGGTTGCTAGAA..........................................2060.1710000000100
...................................................................................................................................AGGCCCATACATTGTTTG.................................................................................................................................................................................1860.1710100000000
................................................................................................................................................GTTTGTATCGACAAAATGAGTGCG------AA......................................................................................................................................................26120.1720200000000
...............................................................................................................................................TGTTTGTATCGACAAAATGAGTGCG------........................................................................................................................................................25120.1720000000020
..........................................................................................................................................................................................................................................................................TCGAGGAGGTTGCTAGAATG........................................2060.1710100000000
..............................................................................................................................................TTGTTTGTATCGACAAAATGAGTGC...............................................................................................................................................................25120.1720100001000
.................................................................................................................................................................................................................................................................TTAGCGATATCGAGGAGGTTGCTAC............................................2570.1410100000000
...............................................................................................................................................................................................................................................................CATTAGCGATATCGAGGAGGTTGCTA.............................................2670.1410100000000
.......................................................................................AA------------------------GTATTATGAGGGGCATAAAGG................................................................................................................................................................................................2380.1310100000000
....................................................................................................................TTATGAGGGGCATAA...................................................................................................................................................................................................1580.1310000000010
..................................................................................................................TATTATGAGGGGCATAA...................................................................................................................................................................................................1780.1310000000100
..................................................................................................................................................................................................................................................................TAGCGATATCGAGGAGGTTGC...............................................2190.1110100000000
................................................................................................................................................................................................................................................................ATTAGCGATATCGAGGAGGTTGCT..............................................2490.1110100000000
..................................................................................................................................................................................................................................................................TAGCGATATCGAGGAGGTTG................................................20100.1010000000010
...................................................................................................................................................................................................................................................................AGCGATATCGAGGAGGTTG................................................19100.1010100000000
................................................................................................................................................................................................................................................................ATTAGCGATATCGAGGAGGTTT................................................22100.1010100000000
................................................................................................................................................................................................................................................................ATTAGCGATATCGAGGAGGTT.................................................21100.1010000001000
.................................................................................................................................................................................................................................................................TTAGCGATATCGAGGAGG...................................................18100.1010100000000
.....................................................................................................................................................................GCG------AATAATGC------------------CAGAATT.......................................................................................................................18110.0910100000000
.............................................................................................................................................................AAATGAGTGCG------AATAATGC------------------CAGAATA.......................................................................................................................26110.0910000000010
....................................................................................................................................................................TGCG------AATAATGC------------------CAGAATTG......................................................................................................................20110.0910100000000
......................................................................................................................................................ATCGACAAAATGAGTGCG------AATAATGC------------------..............................................................................................................................26110.0910100000000
......................................................................................................................................................................CG------AATAATGC------------------CAGAATTGCT....................................................................................................................20110.0910100000000
.........................................................................................................................................................GACAAAATGAGTGCG------AATAATGC------------------C.............................................................................................................................24110.0910100000000
.....................................................................................................................................................TATCGACAAAATGAGTGCG------AATAATG.................................................................................................................................................26110.0910100000000
.......................................................................................................................................................TCGACAAAATGAGTGCG------AATAATGC------------------CA............................................................................................................................27110.0910000001000
...................................................................................................................................................TGTATCGACAAAATGAGTGCG------AATAA...................................................................................................................................................26110.0910000000010
..................................................................................................................................................................AGTGCG------AATAATGC------------------CAGAATTGCTA...................................................................................................................25110.0910100000000
...............................................................................................................................................................ATGAGTGCG------AATAATGC------------------CAGAATTGC.....................................................................................................................26110.0910100000000
...................................................................................................................................................................GTGCG------AATAATGC------------------CAGAATTGCT....................................................................................................................23110.0910100000000
........................................................................................................................................................CGACAAAATGAGTGCG------AATAATGC------------------CA............................................................................................................................26110.0910000000100
.................................................................................................................................................TTTGTATCGACAAAATGAGTGCG------AATA....................................................................................................................................................27110.0910100000000
...............................................................................................................................................................ATGAGTGCG------AATAATGC------------------CAGAATTG......................................................................................................................25110.0910100000000
..................................................................................................................................................TTGTATCGACAAAATGAGTGCG------AATAAA..................................................................................................................................................28110.0910100000000
................................................................................................................................................................TGAGTGCG------AATAATGC------------------CAGAATTGCAC...................................................................................................................27110.0910100000000
.................................................................................................................................................................GAGTGCG------AATAATGC------------------CAGAATTGCA....................................................................................................................25110.0910100000000
.......................................................................................................................................................TCGACAAAATGAGTGCG------AATAATGC------------------CAGA..........................................................................................................................29110.0910000000010
.................................................................................................................................................TTTGTATCGACAAAATGAGTGCG------AATAA...................................................................................................................................................28110.0910000001000
...................................................................................................................................................TGTATCGACAAAATGAGTGCG------AATA....................................................................................................................................................25110.0910100000000
.........................................................................................................................................................GACAAAATGAGTGCG------AATAATGC------------------CAGA..........................................................................................................................27110.0910100000000
..............................................................................................................................................................AATGAGTGCG------AATAATGC------------------CAGAAT........................................................................................................................24110.0910000100000
................................................................................................................................................................TGAGTGCG------AATAATGC------------------CAGAATTGA.....................................................................................................................25110.0910100000000
.............................................................................................................................................................AAATGAGTGCG------AATAATGC------------------CAGAATTG......................................................................................................................27110.0910000000010
...................................................................................................................................................TGTATCGACAAAATGAGTG................................................................................................................................................................19120.0810100000000
.............................................................................................................................................................AAATGAGTGCG------AATAATGC------------------CAGA..........................................................................................................................23120.0810000000010
................................................................................................................................................GTTTGTATCGACAAAATGAGTGCG------........................................................................................................................................................24120.0810100000000
.....................................................................................................................................................TATCGACAAAATGAGTGCG------AA......................................................................................................................................................21120.0810100000000
...............................................................................................................................................TGTTTGTATCGACAAAATGAGT.................................................................................................................................................................22120.0810100000000
....................................................................................................................................................GTATCGACAAAATGAGTGCG------........................................................................................................................................................20120.0810100000000
...............................................................................................................................................TGTTTGTATCGACAAAATGAGTG................................................................................................................................................................23120.0810000001000
..........................................................................................................................................TACATTGTTTGTATCGACAAAATGAGAA................................................................................................................................................................28120.0810100000000
........................................................................................................................................CATACATTGTTTGTATCGACAAAA......................................................................................................................................................................24120.0810100000000
..........................................................................................................................................TACATTGTTTGTATCGACAAAATGA...................................................................................................................................................................25120.0810100000000
....................................................................................................................................................GTATCGACAAAATGAGTGCG------AA......................................................................................................................................................22120.0810100000000
..........................................................................................................................................TACATTGTTTGTATCGACAAAATGAA..................................................................................................................................................................26120.0810000000100
............................................................................................................................................................AAAATGAGTGCG------AATAATGC------------------CAGA..........................................................................................................................24120.0810000000010
.................................................................................................................................................TTTGTATCGACAAAATGAGTGC...............................................................................................................................................................22120.0810100000000
...................................................................................................................................................TGTATCGACAAAATGAGTGC...............................................................................................................................................................20120.0810100000000
................................................................................................................................................GTTTGTATCGACAAAATGAGTGC...............................................................................................................................................................23120.0810100000000
.............................................................................................................................................................AAATGAGTGCG------AATAATG.................................................................................................................................................18120.0810000000010
................................................................................................................................................................TGAGTGCG------AATAATGC------------------CAGAA.........................................................................................................................21120.0810100000000
..................................................................................................................................................TTGTATCGACAAAATGAGTGC...............................................................................................................................................................21120.0810010000000
............................................................................................................................................CATTGTTTGTATCGACAAAAT.....................................................................................................................................................................21120.0810000100000
droPer2
C------------------------------------------------------------------------------------------------------------------------------ATAAAGGCCCATACATTGTTTGTATCGACAAAATGAGTGCG------AATAATGC------------------CAGAATTGCTATAAACCAGTTTGATCTATCCGATC----TGCTGCTGAAACAGGGCATTAGCGATATCGAGGAGGTTGCTAGGATGG---------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................................ATTAGCGATATCGAGGAGGTTGC...............................................2391.2211060005
........................................................................................................................................................................................................................................................................TATCGAGGAGGTTGCTAGGATG........................................2221.002200000
................................................................................................................................................................................................................................................................ATTAGCGATATCGAGGAGGTTG................................................2290.565020003
.........................................................................................................................................................................................................................................TC----TGCTGCTGAAACAGGGC......................................................................19110.273300000
.................................................................................................................................................................................................................................................................TTAGCGATATCGAGGAGGTTGC...............................................2290.222010001
................................................................................................................................................................................................................................................................ATTAGCGATATCGAGGAGGTT.................................................2190.222010001
.................................................................................................................................................................................................................................CTATCCGATC----TGCTGCTGA..............................................................................19130.152200000
................................................................................................................................................................................................................................................................ATTAGCGATATCGAGGAGGTTGCC..............................................2490.111000001
...................................................................................................................................................................................................................................................................AGCGATATCGAGGAGGTTGC...............................................2090.111100000
................................................................................................................................................................................................................................................................ATTAGCGATATCGAGGAGGT..................................................2090.111010000
...............................................................................................................................................TGTTTGTATCGACAAAATGAGTGC...............................................................................................................................................................24110.091000001
...................................................................................................................................................TGTATCGACAAAATGAGTGCG------........................................................................................................................................................21110.091001000
...............................................................................................................................................TGTTTGTATCGACAAAATGAGTG................................................................................................................................................................23110.091010000
droAna3
CCTGCTCCA-C--AGACCAATTTT-AACGACCCGGACTTTC--------ACATTGACAACGATATTTCCGA------------------TACTCCAAAGCAAGTACCGTTGACATATAATAAAAGTCATAAAAGGCCATACATCGTCTATATTGACAAACACCCTAATGAA---G------ACGA---GAA---------CCGAAAACCCACAAATGCTTTAGAACTGAATGCTT----CAATTTTTAAGCTTAAACTTAATGACATTGTTAAAGTAAATAAAAT-----------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CGACGAT--------------------------------------------------------------GATAACGA---CAGTTCCTCCAAACCGCAGCAAGTACCTCTTAGCTATAAGAGCAATCACAAAGGACCTTATATTGTTTATATTGACAAACTCACTAACGGTGAAAGTAATAGAGA---AAACC---------GGGAACCTATTAATGCGCTTGAATTAAACGCAT----CCATTTTTAAGCTTAAAATCAAAGATATTTTAAAAGTCAATAAAATAG---------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CAACACC---A---------A--------------------AA---ACAACAATAAAAACAAAAATGCTAAAAACAA---CA------------------------------------------------------------------------ACAATAGTACCAAA------AACAACAACAA---CAACAG-------------------------------------------------------------CAGTATCAAAAACAACAACAACACAAATTCAA---------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CGAAGAG--GCAGTAA----G--------------------AA---ATGAGGATGTAAGCGAGAAAACTGAAAATAA---CGGGTTCCT------------------------ATACCACAGCTCCCACAAAGGTCCGTTTGTGGTATATATTGACAAAGCGATTGAA------ACAAACACAGA---CAACCGTCATAATAGAGTACCAATCAACCCACTGGAGTTGAATGCGG----TTTTGCTTAAGTTAAAAATCAAAGATATAATTTCTGTCAATAAAATAG---------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TAATGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAACAG----TATTAACTGAGCTTAAAATAGAAG---------TAACTGAGCGATCAA---------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TGGTAAA--ATAATAACGAACATT-ACTAACAA--------AGAGGAAAAGAAGGAAAATGGAAATTTCAATAACGG---CGAGTACTC------------------------ATACAGCA-------------GCCCTTTGTCGTCTATATAGACAAAATTGGCGAA------AACAATGGCGA---AAACCGACCTAATAGAGTACCAATAAATCTTCTAGAATTAAATGCGG----TTTTATTAA-AATAAAAATAAAAGACATTACCTCAGTGAATAAGAT-----------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TGCTAGA---A---------A--------------------AGAAGAGAAGAGAAAAAGTGGAAATTTGGAAAACAA---CGGATACTC------------------------GTACAGCAGCGCTCACAAGGGACCCTTTGTGGTCTACATAGACAAAATTGGTGAA------ACCAATGGCGA---AAATCGACCTAGAAGAGTTCCTATAAATCCTCTTGAACTAAATGCTG----TCTTGCTAAAATTAAATATTAAAGATATAACTTCAGTAAATAAGAT-----------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CAAAGAA--------------------------------------GAGAAGAGGGAAAACGGAAATTTGGAAAACAA---CGGTTACTC------------------------GTATAGCAGTACACACAAGGTACCTTTTGTGGTCTACATAGACAAAATTGGTGAA------AACTATGGCGA---GGATCGTCCTAAAAGAGTTCCTATAAACCCCCTTGAATTAAATGCTG----TTCTGTTAAAATTAAACATTAAAGATATTATTTCCGTAAAGAAGAT-----------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CAGTAAAAG-C--CAACCAAAAGAAGGAGATCAAGTAAATG--------ACATTGCCAGCAA-----TAAGGGAAAGCAATTTATGCAG---GTATTTGAACCTATTTTTTACCCC-----CCAACCAAAAAGGACCGTTTATAGTGTATATTGACAAAATGACAGAA------AATGGTGATAACTACAACAGACATAATAGAGCACCAATAAATGCTTTAGAGCTTAATGTAG----TTCTGTTTAACCTCAAATTGAAAGACATAGTAAAAGTAAACAAAAT-----------------------------------------SizeHit CountTotal NormTotal
No Reads
droYak3
G-----------------------------------------------------------------------------------------------------------------TATAATAAGAATCACAAAGGCCTATTCATTGTCGGCATAGACAAGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads

Generated: 05/17/2015 at 10:14 PM