ID:

dwi_223

 Coordinate:

scf2_1100000001059:670-790 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.1 -13.1 -12.9

Flybase annnotation

exon [dwil_GLEANR_16266:1]; exon [dwil_GLEANR_16266:2]; CDS [Dwil\GK16001-cds]; CDS [Dwil\GK16001-cds]; intron [Dwil\GK16001-in]

No Repeatable elements found

mature
  1. scf2_1100000012847:217-240 +
  2. scf2_1100000008758:137-160 -
  3. scf2_1100000006398:248-271 +
  4. dwi_4143  scf2_1100000011608:386-409 -
  5. scf2_1100000003970:379-402 +
  6. scf2_1100000006846:1078-1101 +
  7. scf2_1100000004585:432239-432262 -
  8. scf2_1100000004762:5911292-5911315 -
  9. dwi_223  scf2_1100000001059:684-707 -
star

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------##################################################
GTTTTACCGAGAATACGGAGAGTTCTGTTGCAGAACCCAATACGAATAATGTATGCTCGGACACATCTGAAAAAATTATACCAGCAACTACATTCATTAAGAAGCAAGGTATTTTGCAATTATAATCAGAAATTTTCGAAATATTTAAGTACATTTTACTTTTCGTTTCAGGGTGAAGCTAACTTGAACGCCAACAGTCCTGATACAGAAGCATCAAATTC
**************************************************((((..(((((....(((((.....(((((...((((((...(((.....)))....)))....)))...))))))))))....))))).))))..(((((.....)))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 V118
embryo
...........................................................................................ATACATTATGAAGCAAGGAATT............................................................................................................ 22 3 1 1.00 1 1 0 0
......CCGAGAATACGGAGAGTTCTGTTG............................................................................................................................................................................................... 24 0 5 0.20 1 1 0 0
.....................................................................................................................................TTTCGAAATATTTAAGTACATTTT................................................................ 24 0 9 0.11 1 1 0 0
............................................................................................................GTATTTTGCAATTATAATCAGAAATT....................................................................................... 26 0 11 0.09 1 1 0 0
.............TACGGAGAGTTCTGTTGCAGAACCC....................................................................................................................................................................................... 25 0 13 0.08 1 0 0 1
.............TACGGAGAGTTCTGTTGCAGAA.......................................................................................................................................................................................... 22 0 13 0.08 1 0 1 0
............ATACGGAGAGTTCTGTTGCAGAACC........................................................................................................................................................................................ 25 0 13 0.08 1 1 0 0
.............TACGGAGAGTTCTGTTGCAGA........................................................................................................................................................................................... 21 0 13 0.08 1 1 0 0
...........................................................................................ATACATTATGAAGCAAGGAA.............................................................................................................. 20 3 20 0.05 1 1 0 0

Anti-sense strand reads

CAAAATGGCTCTTATGCCTCTCAAGACAACGTCTTGGGTTATGCTTATTACATACGAGCCTGTGTAGACTTTTTTAATATGGTCGTTGATGTAAGTAATTCTTCGTTCCATAAAACGTTAATATTAGTCTTTAAAAGCTTTATAAATTCATGTAAAATGAAAAGCAAAGTCCCACTTCGATTGAACTTGCGGTTGTCAGGACTATGTCTTCGTAGTTTAAG
**************************************************((((..(((((....(((((.....(((((...((((((...(((.....)))....)))....)))...))))))))))....))))).))))..(((((.....)))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
 V117
male body		 V119
head
.....................CAAGACAACGTCTTGGGTTATGCTTAT............................................................................................................................................................................. 27 0 15 4.93 74 23 51 0 0 0
.....................CAAGACAACGTCTTGGGTTATGCTT............................................................................................................................................................................... 25 0 15 2.27 34 14 19 0 0 1
......................AAGACAACGTCTTGGGTTATGCTTAT............................................................................................................................................................................. 26 0 15 1.80 27 9 17 0 1 0
.....................CAAGACAACGTCTTGGGTTATGCT................................................................................................................................................................................ 24 0 15 1.33 20 18 2 0 0 0
....................TCAAGACAACGTCTTGGGTTATGCT................................................................................................................................................................................ 25 0 15 1.27 19 13 6 0 0 0
...................CTCAAGACAACGTCTTGGGTTATGCT................................................................................................................................................................................ 26 0 15 1.00 15 15 0 0 0 0
......................................................................................................TCGTTCCATAAAACGTTAATATTAGT............................................................................................. 26 0 9 0.67 6 4 2 0 0 0
.....................CAAGACAACGTCTTGGGTTATGCTAAT............................................................................................................................................................................. 27 1 15 0.53 8 0 8 0 0 0
.............................CGTCTTGGGTTATGCTTATTACAT........................................................................................................................................................................ 24 0 12 0.50 6 1 5 0 0 0
....................TCAAGACAACGTCTTGGGTTATGCTT............................................................................................................................................................................... 26 0 15 0.47 7 0 7 0 0 0
.......................AGACAACGTCTTGGGTTATGCTTAT............................................................................................................................................................................. 25 0 15 0.47 7 6 1 0 0 0
......GGCTCTTATGCCTCTCAAGACAACGTCT........................................................................................................................................................................................... 28 0 5 0.40 2 2 0 0 0 0
......GGCTCTTATGCCTCTCAAGACAACGT............................................................................................................................................................................................. 26 0 5 0.40 2 2 0 0 0 0
...................CTCAAGACAACGTCTTGGGTTATGCTT............................................................................................................................................................................... 27 0 15 0.33 5 5 0 0 0 0
..........................................................................................................TCCATAAAACGTTAATATTAGTCT........................................................................................... 24 0 9 0.33 3 1 0 2 0 0
......................AAGACAACGTCTTGGGTTATGCT................................................................................................................................................................................ 23 0 15 0.27 4 4 0 0 0 0
.....................CAAGACAACGTCTTGGGTTATGCTTA.............................................................................................................................................................................. 26 0 15 0.27 4 3 1 0 0 0
..........................CAACGTCTTGGGTTATGCTTATTACAT........................................................................................................................................................................ 27 0 12 0.25 3 2 1 0 0 0
..........................................................................................................TCCATAAAACGTTAATATTAGTCTTT......................................................................................... 26 0 9 0.22 2 2 0 0 0 0
....................TCAAGACAACGTCTTGGGTTATGCTTAT............................................................................................................................................................................. 28 0 15 0.20 3 3 0 0 0 0
.......GCTCTTATGCCTCTCAAGACAACGTCT........................................................................................................................................................................................... 27 0 5 0.20 1 1 0 0 0 0
......TGCTCTTATGCCTCTCAAGACAACGTCTT.......................................................................................................................................................................................... 29 1 5 0.20 1 1 0 0 0 0
.......GCTCTTATGCCTCTCAAGACAACGT............................................................................................................................................................................................. 25 0 5 0.20 1 1 0 0 0 0
.....................CAAGACAACGTCTTGGGTTATGC................................................................................................................................................................................. 23 0 15 0.20 3 3 0 0 0 0
......GGCTCTTATGCCTCTCAAGACAACG.............................................................................................................................................................................................. 25 0 5 0.20 1 1 0 0 0 0
......GGCTCTTATGCCTCTCAAGACAACGTC............................................................................................................................................................................................ 27 0 5 0.20 1 1 0 0 0 0
.............................CGTCTTGGGTTATGCTAATTACAT........................................................................................................................................................................ 24 1 12 0.17 2 0 2 0 0 0
.....................CAAGACAACGTCTTGGGTTATGCTTATC............................................................................................................................................................................ 28 1 15 0.13 2 0 2 0 0 0
...................CTCAAGACAACGTCTTGGGTTATGC................................................................................................................................................................................. 25 0 15 0.13 2 2 0 0 0 0
......................AAGACAACGTCTTGGGTTATGCTAAT............................................................................................................................................................................. 26 1 15 0.13 2 0 2 0 0 0
.......................AGACAACGTCTTGGGTTATGCTT............................................................................................................................................................................... 23 0 15 0.13 2 2 0 0 0 0
......................AAGACAACGTCTTGGGTTATGCTT............................................................................................................................................................................... 24 0 15 0.13 2 0 2 0 0 0
.......................AGACAACGTCTTGGGTTATGCT................................................................................................................................................................................ 22 0 15 0.13 2 0 2 0 0 0
.........................................................................................................TTCCATAAAACGTTAATATTAGTCTTT......................................................................................... 27 0 9 0.11 1 1 0 0 0 0
.................................................................................................................................TTTAAAAGCTTTATAAATTCATGT.................................................................... 24 0 9 0.11 1 1 0 0 0 0
......................................................................................................................TAATATTAGTCTTTAAAAGCTTTAT.............................................................................. 25 0 9 0.11 1 1 0 0 0 0
.......................................................................................................CGTTCCATAAAACGTTAATATTAGT............................................................................................. 25 0 9 0.11 1 1 0 0 0 0
..........................................................................................................TCCATAAAACGTTAATATTAGTCTTTAA....................................................................................... 28 0 9 0.11 1 1 0 0 0 0
....................................................................................................................GTTAATATTAGTCTTTAAAAGCTTTAT.............................................................................. 27 0 9 0.11 1 1 0 0 0 0
.............................................................................................................................................................TGAACAGCAAAGTCGCACT............................................. 19 2 10 0.10 1 1 0 0 0 0
..........................................................................................................TCCATAAGAGGTTAATATTA............................................................................................... 20 2 11 0.09 1 0 1 0 0 0
................................................................................................................AAACGTTAATATTAGTCTTTAAAAGCTT................................................................................. 28 0 11 0.09 1 1 0 0 0 0
........................................................................TTTAATATGGTCGTTGATGTAAG.............................................................................................................................. 23 0 11 0.09 1 1 0 0 0 0
...............................................................................................................AAAACGTTAATATTAGTCTTTAAAAGCTT................................................................................. 29 0 11 0.09 1 1 0 0 0 0
.............................CGTCTTGGGTTATGCTTATAACAT........................................................................................................................................................................ 24 1 12 0.08 1 0 1 0 0 0
............................ACGTCTTGGGTTATGCTTATTACAT........................................................................................................................................................................ 25 0 12 0.08 1 1 0 0 0 0
.........................ACAACGTCTTGGGTTATGCTTATTACAT........................................................................................................................................................................ 28 0 12 0.08 1 1 0 0 0 0
..........................CAACGTCTTGGGTTATGCTAATTACAT........................................................................................................................................................................ 27 1 12 0.08 1 1 0 0 0 0
.............................CGTCTTGGGTTATGCTTATTACATAC...................................................................................................................................................................... 26 0 12 0.08 1 0 1 0 0 0
..................................TGGGTTATGCTTATTACATA....................................................................................................................................................................... 20 0 12 0.08 1 0 1 0 0 0
.........TCTTATGCCTCTCAGGACAACGTCTT.......................................................................................................................................................................................... 26 1 13 0.08 1 1 0 0 0 0
............TATGACTCTCAAGACAACGTCTT.......................................................................................................................................................................................... 23 1 13 0.08 1 1 0 0 0 0
..........CTTATGCCTCTCAAGACAACGTCTT.......................................................................................................................................................................................... 25 0 13 0.08 1 1 0 0 0 0
........CTCTTATGCCTCTCAAGACAACGT............................................................................................................................................................................................. 24 0 13 0.08 1 1 0 0 0 0
.........TCTTATGCCTCTCAAGACAACGTCT........................................................................................................................................................................................... 25 0 13 0.08 1 1 0 0 0 0
..............TGCCTCTCAAGACAACGTCT........................................................................................................................................................................................... 20 0 13 0.08 1 1 0 0 0 0
.........TCTTATGCCTCTCAAGACAACGTC............................................................................................................................................................................................ 24 0 13 0.08 1 1 0 0 0 0
...................CTCAAGACAACGTCGCGGGTTATGCT................................................................................................................................................................................ 26 2 15 0.07 1 1 0 0 0 0
......................AAGACAACGTCTTGGGTTATG.................................................................................................................................................................................. 21 0 15 0.07 1 0 1 0 0 0
.....................CAAGACAACGTCTTGGGTTATGCTAATT............................................................................................................................................................................ 28 1 15 0.07 1 0 1 0 0 0
......................AAGACAACGTCTTGGGTTATGCTCAT............................................................................................................................................................................. 26 1 15 0.07 1 0 1 0 0 0
.........................ACAACGTCTTGGGTTATGCTTAT............................................................................................................................................................................. 23 0 15 0.07 1 1 0 0 0 0
.....................CAAGACAACGTCTTTGGTTATGCTTAT............................................................................................................................................................................. 27 1 15 0.07 1 0 0 1 0 0
...................ATCAAGACAACGTCTTGGGTTATGCT................................................................................................................................................................................ 26 1 15 0.07 1 1 0 0 0 0
.............................CGTCTTGGGTTATGCTTA.............................................................................................................................................................................. 18 0 15 0.07 1 1 0 0 0 0
.......................AGACAACGTCTTGGGTTATGCTTATT............................................................................................................................................................................ 26 0 15 0.07 1 0 1 0 0 0
....................TCAAGACAACGTCTTGGGTTATGC................................................................................................................................................................................. 24 0 15 0.07 1 1 0 0 0 0
......................AAGACAACGTCTTGGGTTATGCTTA.............................................................................................................................................................................. 25 0 15 0.07 1 1 0 0 0 0
..........................CAACGTCTTGGGTTATGCTTAT............................................................................................................................................................................. 22 0 15 0.07 1 1 0 0 0 0
....................TCAAGACAACGTCTTGGGTTATGCTAAT............................................................................................................................................................................. 28 1 15 0.07 1 1 0 0 0 0
....................ACAAGACAACGTCTTGGGTTATGCT................................................................................................................................................................................ 25 1 15 0.07 1 1 0 0 0 0
...................TTCAAGACAACGTCTTGGGTTATGCTTA.............................................................................................................................................................................. 28 1 15 0.07 1 1 0 0 0 0
..................GCTCAAGACAACGTCTTGGGTTATGCT................................................................................................................................................................................ 27 1 15 0.07 1 1 0 0 0 0
...................AACAAGACAACGTCTTGGGTTATGCT................................................................................................................................................................................ 26 2 15 0.07 1 1 0 0 0 0
.....................CAAGACAACGTCTTGGGTTA.................................................................................................................................................................................... 20 0 15 0.07 1 1 0 0 0 0
.........................ACAACGTCTTGGGTTATGCTT............................................................................................................................................................................... 21 0 15 0.07 1 1 0 0 0 0
.....................CAAGACAACGTCTTGGGTTATGCTA............................................................................................................................................................................... 25 1 15 0.07 1 0 1 0 0 0
....................TCAAGACAATGTCTTGGGTTATGCT................................................................................................................................................................................ 25 1 15 0.07 1 0 1 0 0 0
......................AAGACAACGTCTTGGGTTATGCTAA.............................................................................................................................................................................. 25 1 15 0.07 1 0 1 0 0 0
.......................AGACAACGTCTTGGGTTATGCTTAG............................................................................................................................................................................. 25 1 15 0.07 1 1 0 0 0 0
.....................CAAGACAACGTCTTGGGTCATGCTTAT............................................................................................................................................................................. 27 1 15 0.07 1 0 1 0 0 0
.................................................................................GTAGTTGTTGTAGGTAATTC........................................................................................................................ 20 3 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000001059:620-840 - dwi_223 GTTTTACCGA--------------------------GAATACGGAGAGTTCTGTTGCA-------------GAACCCAATACGAATAATGTA--------TGCTCGGACACATCTGAAAAAATTATACCAGCAACTACATTCATTAAGAAGCAAGGTATTTTGCAATTATAATCAGAAATT----TTCGAAATATTTAAGTACATT-TTAC----------TTTTCGTTTCAGGGTGAAGCTAA-----------CTTGAACGCCAACAGTCCTGATACAG------AAGCATCA--------AAT------------TC
droMoj3 scaffold_6473:16913287-16913452 + AAACGAAATT---------------------------------------TACTATTTCTATGTCGTCAAACGAGGTCAAGAAAGCGTGCGTG--------CAATTGGTGACAGATGAAAAAGTG-----------------------------TCATTCTCTCTTTTTG--------------------------------------ATTCTGCACCTTTCAAAGCGCTG----ACAGACCAAATTTTTAATGGGT----------------TGCAGATGAGCCCCATCACATCACGGAA--------------------
dp5 XL_group1a:1213760-1213925 + AAAAGAAGTT---------------------------------------TTCGGGGGTAATGGGGCAAGATGATGTCAAGAATGCCTGAATT--------GACCTGGTGACTGCCGCAAAAGTT-----------------------------CCGTTTGCTGTACTAG--------------------------------------ACTCAAAGGGCTTTAAGGCGTTA----ACAGCTCACATATTTAGCGGCT----------------TGGATATGCCCACTGTAACTTCCAGAAA--------------------
droPer2 scaffold_90:149234-149417 - TTCATG---------------------------------------------------------CAGCTATTTAATTTGAAAGAACCCGTAAGTATTTATATAATTTAT----------------ATACATATAACATAACATATTAAAAATTAATATTTCAGACAAGTGCAATAGCACAGCCTTGCTCAAGCAGCTCAAGCGCGATAACTT-----CGTTCGGTACATCGCAAAACT---CAAACACCTGCTCGCT-----------------------------------ATTG--------AAC------------GA
droAna3 scaffold_13339:532399-532434 + TAAATTATTT---------------------------------------AAAAATATAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-------------------------------------------------------------TACAATACAT---------A
droBip1 scf7180000393225:2810-2976 + AAATAAAATT---------------------------------------TGCAATAACGATGGGCAAAAATTAAGTGAAGGATGCGTGCATC--------GATTTGGTGACGCTGGAAAAGCTT-----------------------------CCGTTGGCTATTTTTG--------------------------------------ATTCGAAGTGCTTCAAAACGCTA----ACGTCTCAAATATTTTCTGCAC----------------TGGATATGCCGGCTGTTTCATCCAGAAA-------------------A
droKik1 scf7180000301632:2341-2512 + AGTGAGCC------------------TGTGGAAAAG-CAA--AAAAAATTGTCATAAAGATGTCGGCCAGTCAAGTGAAAGAGGCTTGCGTG--------CAATTTGTGACAGACGAAAAATTG-----------------------------CCATTTCAAATGTTTG--------------------------------------ATTT-----CTTTTAAGACATTGCAAGACGGAGCAAA-----------T----------------TGGACATGACTCCCATAACAGCGCGGAA--------------------
droFic1 scf7180000452197:9065-9259 + CAGTGAGCC-----------------TGTGGAAAAG-CAAAAAAAAAATTGTCATAAAAATGTCGGCCAGTGAAGTGAAAGAGGCTTGCGTG--------CAATTTGTGACAGACGAAAAATTG-----------------------------CCATTTCAAATGTTTG--------------------------------------ATTCTACACCTTTTAAGACATTG----ACGGAGCAAATTTTTAAGGGCT----------------TGAACATGACTCCCATAACAGCGCGGAATGTGAT------------GC
droEle1 scf7180000488772:8614-8781 + AGAAAAAGTT---------------------------------------CTCGGTCGTAATGGGGCAATAAGAAGTTAAAAAAGCCTGCATT--------GTCCTGGTGACCGTTGCAAAGGTT-----------------------------CCTTTGGCAGTATTAC--------------------------------------ACTACGAAGGTTTCAAGACGTTA----ACAGCTCAAATATTTAGTGGCT----------------CGGATATGACATCTATAACATCGAGAAAT------------------G
droRho1 scf7180000778586:4717-4756 + AAATAAAATA-------------------------------------------------------AAAAATAAAATAAGAAACGCGTTCGTA--------AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droBia1 scf7180000300604:4276-4310 + AAAACAATTG--------------------------------------------------------------ATA-------------------------TAATAAAT----------------AAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATAAAT---------AA
droTak1 scf7180000411242:11752-11976 + AATATTTCGAACGGCGACATTGGACTTTCAGACCAAAAAAGCAGAAAATTGTCTTGCATATGGACGAACAAGAAATAAAAAAGGCTTGCGTG--------CAATTGGTAACAGTTGAAAAAGTT-----------------------------TCATTCTCGTTTTTTG--------------------------------------ACTCGGAATCCTTTAAAATATTA----ACCGGACAGATCTTCAGGGGTC----------------TGAATATGCTTCCAATAACGTCGACCAATATAATGCATCTTATAACAG
droEug1 scf7180000409791:33114-33281 + AAGCCAG-------------------------------------AAAATTGTCATAAAGATGTCGGCCAGTCAAGTGAAAGAGGCTTGCGTG--------CAATTTGTGACAGACGAAAAATTG-----------------------------TCATTTCAAATGTTTG--------------------------------------ATTCTGCACCTTTTAAGACATTG----ACGGACCAAATTTATAAGGGCT----------------TGCACATGACTCCCGTAACAGCGCGGAA--------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
GTTTTACCGA--------------------------GAATACGGAGAGTTCTGTTGCA-------------GAACCCAATACGAATAATGTA--------TGCTCGGACACATCTGAAAAAATTATACCAGCAACTACATTCATTAAGAAGCAAGGTATTTTGCAATTATAATCAGAAATT----TTCGAAATATTTAAGTACATT-TTAC----------TTTTCGTTTCAGGGTGAAGCTAA-----------CTTGAACGCCAACAGTCCTGATACAG------AAGCATCA--------AAT------------TCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......CCGA--------------------------GAATACGGAGAGTTCTGTTG........................................................................................................................................................................................................................................................................2450.20101000
....................................................................................................................................................................................T----TTCGAAATATTTAAGTACATT-TT...............................................................................................................2490.11101000
...........................................................................................................................................................GTATTTTGCAATTATAATCAGAAATT----.......................................................................................................................................26110.09101000
.......................................TACGGAGAGTTCTGTTGCA-------------GAACCC...................................................................................................................................................................................................................................................25130.08100010
.......................................TACGGAGAGTTCTGTTGCA-------------GAA......................................................................................................................................................................................................................................................22130.08100100
......................................ATACGGAGAGTTCTGTTGCA-------------GAACC....................................................................................................................................................................................................................................................25130.08101000
.......................................TACGGAGAGTTCTGTTGCA-------------GA.......................................................................................................................................................................................................................................................21130.08101000
droMoj3
AAACGAAATT---------------------------------------TACTATTTCTATGTCGTCAAACGAGGTCAAGAAAGCGTGCGTG--------CAATTGGTGACAGATGAAAAAGTG-----------------------------TCATTCTCTCTTTTTG--------------------------------------ATTCTGCACCTTTCAAAGCGCTG----ACAGACCAAATTTTTAATGGGT----------------TGCAGATGAGCCCCATCACATCACGGAA--------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................CAATTGGTGACAGATGAAAAAGTG-----------------------------TC.....................................................................................................................................................................2615.005120020
....................................................................................................CAATTGGTGACAGATGAAAAAGTG-----------------------------TCA....................................................................................................................................................................2714.004400000
.....................................................................................................................................................................TTTG--------------------------------------ATTCTGCACCTTTCAAAGCGC............................................................................................2514.004200020
.................................................................TCAAACGAGGTCAAGAAAGCGTGCGTG--------............................................................................................................................................................................................................................2713.003100020
.................................................................TCAAACGAGGTCAAGAAAGCGTGCG......................................................................................................................................................................................................................................2513.003200010
............................................................TGTCGTCAAACGAGGTCAAGAAAGCGT.........................................................................................................................................................................................................................................2713.003200010
....................................................................................................CAATTGGTGACAGATGAAAAAGTG-----------------------------T......................................................................................................................................................................2513.003100011
....................................................................................................................................................................TTTTG--------------------------------------ATTCTGCACCTTTCAAAGCGC............................................................................................2613.003200010
....................................................................................................CAATTGGTGACAGATGAAAAAGT.....................................................................................................................................................................................................2332.678700010
....................................................................................................CAATTGGTGACAGATGAAAAAGTG-----------------------------.......................................................................................................................................................................2432.678800000
............................................................................................................GACAGATGAAAAAGTG-----------------------------TCATTCTCTCT............................................................................................................................................................2712.002200000
.....................................................................................................................................................................................................................................G----ACAGACCAAATTTTTAATGGGT----------------................................................2312.002200000
............................................................................................................GACAGATGAAAAAGTG-----------------------------TCATTCTC...............................................................................................................................................................2412.002100001
...................................................................................................................................................................TTTTTG--------------------------------------ATTCTGCACCTTTCAAAGCGC............................................................................................2712.002100010
............................................................TGTCGTCAAACGAGGTCAAGAAAGCGTG........................................................................................................................................................................................................................................2812.002200000
.................................................................................................................................................................TCTTTTTG--------------------------------------ATTCTGCACCTTTCAAAGCGC............................................................................................2911.001100000
.........................................................................................................................................................TCATTCTCTCTTTTTG--------------------------------------ATTCTGCACC.......................................................................................................2611.001000010
...................................................................................................................................................................TTTTTG--------------------------------------ATTCTGCACCTTTCAAAGC..............................................................................................2511.001100000
......................................................................................................................................................................TTG--------------------------------------ATTCTGCACCTTTCAAAGCGC............................................................................................2411.001000010
..........................................................................................................................................................CATTCTCTCTTTTTG--------------------------------------ATTCTGCACCTT.....................................................................................................2711.001100000
................................................................................................................................................................................................................................................................................TGCAGATGAGCCCCATCACATCA.........................2311.001100000
.................................................................TCAAACGAGGTCAAGAAAGCGTGCGT.....................................................................................................................................................................................................................................2611.001000010
.................................................................................................................................................................TCTTTTTG--------------------------------------ATTCTGCACCTTTCAAA................................................................................................2511.001100000
....................................................................................................................................................................................................................GCACCTTTCAAAGCGCTG----ACAGACCAA.............................................................................2711.001100000
....................................................................................................................................................................................................................GCACCTTTCAAAGCGCTG----ACAG..................................................................................2211.001100000
..............................................................TCGTCAAACGAGGTCAAGAAAGCGTGCG......................................................................................................................................................................................................................................2811.001100000
.......................................................................................................................................................................TG--------------------------------------ATTCTGCACCTTTCAAAGCGCT...........................................................................................2411.001100000
......................................................................................................................................................................TTG--------------------------------------ATTCTGCACCTTTCAAAGCGCT...........................................................................................2511.001000010
.......................................................................................................................................................................................................................................................TTAATGGGT----------------TGCAGATGAGCC....................................2111.001000010
.....................................................................................................................................................................................................................................G----ACAGACCAAATTTTTAATGGGT----------------TGCA............................................2711.001100000
.......................................................................................................................................................................TG--------------------------------------ATTCTGCACCTTTCAAAGCGCTG----A.....................................................................................2611.001100000
............................................................................................................................................................TTCTCTCTTTTTG--------------------------------------ATTCTGCACCTT.....................................................................................................2511.001100000
.......................................................................................................................................................................TG--------------------------------------ATTCTGCACCTTTCAAAGCGC............................................................................................2311.001100000
.................................................................................................................................................................................................................................................................................GCAGATGAGCCCCATCACATCACG.......................2411.001100000
.......................................................................GAGGTCAAGAAAGCGTGCG......................................................................................................................................................................................................................................1911.001100000
...................................................................................................................................................................TTTTTG--------------------------------------ATTCTGCACCTTTCA..................................................................................................2111.001000010
.....................................................................................................................................................................................................................CACCTTTCAAAGCGCTG----ACAGACCA..............................................................................2511.001100000
.....................................................................................................................................................................................................................................................................................ATGAGCCCCATCACATCACGGA.....................2211.001000010
.......................................................................................................................................................................TG--------------------------------------ATTCTGCACCTTTCAAAGCGCTG----AC....................................................................................2711.001000010
..............................................................TCGTCAAACGAGGTCAAGAAAGCGT.........................................................................................................................................................................................................................................2511.001100000
.....................................................................................................................................................................................................................................G----ACAGACCAAATTTTTAATGGGT----------------T...............................................2411.001100000
....................................................................................................................................................................TTTTG--------------------------------------ATTCTGCACCTTTCAAAGCGCTG----......................................................................................2811.001000010
....................................................................................CGTGCGTG--------CAATTGGTGACAGATGAAA.........................................................................................................................................................................................................2720.501100000
....................................................................................................CAATTGGTGACAGATGAAAAAG......................................................................................................................................................................................................2230.331100000
....................................................................................................CAATTGGTGACAGATGAAAAAGTA-----------------------------.......................................................................................................................................................................2430.331100000
..................................................................................................................................................................CTTTTTG--------------------------------------ATTCTGCACCT......................................................................................................1840.251100000
.....................................................................................................AATTGGTGACAGATGAAAAAGT.....................................................................................................................................................................................................2240.251100000
dp5
AAAAGAAGTT---------------------------------------TTCGGGGGTAATGGGGCAAGATGATGTCAAGAATGCCTGAATT--------GACCTGGTGACTGCCGCAAAAGTT-----------------------------CCGTTTGCTGTACTAG--------------------------------------ACTCAAAGGGCTTTAAGGCGTTA----ACAGCTCACATATTTAGCGGCT----------------TGGATATGCCCACTGTAACTTCCAGAAA--------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................CTAG--------------------------------------ACTCAAAGGGCTTTAAGGC..............................................................................................23181.0081048101003100
.....................................................................................................................................................................CTAG--------------------------------------ACTCAAAGGGCTTTAAGG...............................................................................................22156.0056046000001000
.....................................................................................................................................................................CTAG--------------------------------------ACTCAAAGGGCTTTAAGGCG.............................................................................................24134.0034019000001500
........................................................................ATGTCAAGAATGCCTGAATT--------GAC.........................................................................................................................................................................................................................23117.001701430000000
.....................................................................................................................................................................CTAG--------------------------------------ACTCAAAGGGCTTTAAGGCGT............................................................................................25116.00160800000800
....................................................................................................................................................................ACTAG--------------------------------------ACTCAAAGGGCTTTAAGG...............................................................................................23115.00150700000800
......................................................................................................................................................................TAG--------------------------------------ACTCAAAGGGCTTTAAGGCG.............................................................................................23115.001505000001000
......................................................................................................................................................................TAG--------------------------------------ACTCAAAGGGCTTTAAGGC..............................................................................................22114.00140610000700
........................................................................ATGTCAAGAATGCCTGAATT--------GACC........................................................................................................................................................................................................................24112.001201110000000
....................................................................GATGATGTCAAGAATGCCTGAAT.....................................................................................................................................................................................................................................23111.00110210010700
....................................................................................................................................................................ACTAG--------------------------------------ACTCAAAGGGCTTTAAGGC..............................................................................................24111.00110600000500
........................................................................ATGTCAAGAATGCCTGAATT--------GA..........................................................................................................................................................................................................................2219.0090900000000
........................................................................ATGTCAAGAATGCCTGAATT--------GACCTGG.....................................................................................................................................................................................................................2717.0070700000000
...........................................................................TCAAGAATGCCTGAATT--------GACCTGG.....................................................................................................................................................................................................................2417.0070700000000
....................................................................GATGATGTCAAGAATGCCTGAAAA--------A...........................................................................................................................................................................................................................2515.0050000000500
.....................................................................................................................................................................CTAG--------------------------------------ACTCAAAGGGCTTTAAG................................................................................................2114.0040200000200
......................................................................................................................................................................TAG--------------------------------------ACTCAAAGGGCTTTAAGGCGT............................................................................................2414.0040300000100
.........................................................................TGTCAAGAATGCCTGAATT--------GACC........................................................................................................................................................................................................................2314.0040400000000
......................................................................................................................................................................TAG--------------------------------------ACTCAAAGGGCTTTAAGG...............................................................................................2113.0030300000000
....................................................................GATGATGTCAAGAATGCCTGAATT--------G...........................................................................................................................................................................................................................2513.0030000000300
....................................................................GATGATGTCAAGAATGCCTGAATT--------GACC........................................................................................................................................................................................................................2813.0030000000300
..................................................................................TGCCTGAATT--------GACCTGGTGACTGCC.............................................................................................................................................................................................................2512.0020110000000
..............................................................................................................................................................TGCTGTACTAG--------------------------------------ACTCAAAGGG.......................................................................................................2112.0020200000000
........................................................................ATGTCAAGAATGCCTGAATT--------GACCTG......................................................................................................................................................................................................................2612.0020200000000
........................................................................ATGTCAAGAATGCCTGAATT--------GACCT.......................................................................................................................................................................................................................2512.0020200000000
....................................................................GATGATGTCAAGAATGCCTGAA......................................................................................................................................................................................................................................2212.0020000000200
.....................................................................................................................................................................CTAG--------------------------------------ACTCAAAGGGCTTTAAGGCGTTA----......................................................................................2712.0020200000000
....................................................................................................................................................................................................................................TA----ACAGCTCACATATTTAGCGGCT----------------................................................2461.5090710000100
....................................................................GATGATGTCAAGAATGCCTG........................................................................................................................................................................................................................................2051.2060200000400
.....................................................................................................................AAAAGTT-----------------------------CCGTTTGCTGTA...........................................................................................................................................................1911.0010100000000
.....................................................................................................................................................................CTAG--------------------------------------ACTCAAAGGGCT.....................................................................................................1611.0010000000100
..............................................................................................................................................................TGCTGTACTAG--------------------------------------ACTCAAAGGGCTTT...................................................................................................2511.0010100000000
.....................................................................................................................................................................CTAG--------------------------------------ACTCAAAGGGCTTTAAGGCGTT...........................................................................................2611.0010100000000
........................................................................ATGTCAAGAATGCCTGAATT--------G...........................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................TTGCTGTACTAG--------------------------------------ACTCAAAGGGCTT....................................................................................................2511.0010100000000
..............................................................................AGAATGCCTGAATT--------GACCTGC.....................................................................................................................................................................................................................2111.0010010000000
............................................................................CAAGAATGCCTGAATT--------GACCTGG.....................................................................................................................................................................................................................2311.0010100000000
....................................................................................................................................................................ACTAG--------------------------------------ACTCAAAGGGCTTTAAGGCG.............................................................................................2511.0010100000000
............................................................................................................GACTGCCGCAAAAGTT-----------------------------CCGTTT.................................................................................................................................................................2211.0010100000000
.....................................................................ATGATGTCAAGAATGCCTGAATT--------G...........................................................................................................................................................................................................................2411.0010000000100
.........................................................................TGTCAAGAATGCCTGAATT--------GACCTGG.....................................................................................................................................................................................................................2611.0010100000000
....................................................................................................................................................................ACTAG--------------------------------------ACTCAAAGGGCTTTAAGGCGT............................................................................................2611.0010100000000
...........................................................................................................TGACTGCCGCAAAAGTT-----------------------------CCGTTTGA...............................................................................................................................................................2511.0010010000000
.........................................................................TGTCAAGAATGCCTGAATT--------GA..........................................................................................................................................................................................................................2111.0010100000000
.........................................................................TGTCAAGAATGCCTGAATT--------GACCT.......................................................................................................................................................................................................................2411.0010100000000
.........................................................................TGTCAAGAATGCCTGAATT--------GAAA........................................................................................................................................................................................................................2311.0010100000000
..............................................................................................................................................................TGCTGTACTAG--------------------------------------ACTCAAAGGGC......................................................................................................2211.0010100000000
....................................................................GATGATGTCAAGAATGCCTGA.......................................................................................................................................................................................................................................2111.0010100000000
..........................................................................GTCAAGAATGCCTGAATT--------GAC.........................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................TGACTGCCGCAAAAGTT-----------------------------CCGTTTGCA..............................................................................................................................................................2611.0010100000000
......................................................................................................................AAAGTT-----------------------------CCGTTTGCTGTACTAG--------------------------------------AC...............................................................................................................2411.0010100000000
....................................................................................................................................................................ACTAG--------------------------------------ACTCAAAGGGCTTTAAA................................................................................................2211.0010000000100
...........................................................................................................TGACTGCCGCAAAAGTT-----------------------------CCG....................................................................................................................................................................2011.0010100000000
...............................................................................................................TGCCGCAAAAGTT-----------------------------CCGTTTGCTGT............................................................................................................................................................2411.0010100000000
.........................................................................TGTCAAGAATGCCTGAATT--------GAC.........................................................................................................................................................................................................................2211.0010100000000
............................................................................................................................................................................................................................................AGCTCACATATTTAGCGGCT----------------TG..............................................2260.6740400000000
............................................................................................................................................................................................................................................AGCTCACATATTTAGCGGCT----------------TGGA............................................2460.6740400000000
...............................................................................................................................................................................................................................................TCACATATTTAGCGGCT----------------TGGA............................................2160.6740400000000
............................................................................................................................................................................................................................................AGCTCACATATTTAGCGGCT----------------TGG.............................................2360.6740400000000
.........................................................TAATGGGGCAAGATGATGTCAAG................................................................................................................................................................................................................................................2350.4020000200000
......................................................GGGTAATGGGGCAAGATG........................................................................................................................................................................................................................................................1850.4020200000000
....................................................................................................................................................................................................................................................TATTTAGCGGCT----------------TGGATATGC.......................................2160.3320100001000
...............................................................................................................................................................................................................................................TCACATATTTAGCGGCT----------------TGGATAT.........................................2460.3320200000000
....................................................................................................................................................................................................................................................TATTTAGCGGCT----------------TGGATATGCCCACT..................................2660.3320200000000
........................................................................................................................................................................................................................................................TAGCGGCT----------------TGGATATGCCCACTG.................................2360.3320200000000
...........................................................................................................................................................................................................................................CAGCTCACATATTTAGCGGCT----------------TGGA............................................2560.3320200000000
....................................................................................................................................................................................................................................................TATTTAGCGGCT----------------TGGATATG........................................2060.3320200000000
...............................................................................................................................................................................................................................................TCACATATTTAGCGGCT----------------TGGATATG........................................2560.3320110000000
...............................................................................................................................................................................................................................................TCACATATTTAGCGGCT----------------TGGATA..........................................2360.3320200000000
................................................................................................................................................................................................................................................................................TGGATATGCCCACTGTAAC.............................1970.2920200000000
........TT---------------------------------------TTCGGGGGTAATGGGGC..............................................................................................................................................................................................................................................................1950.2010000000100
....................................................................GATGATGTCAAGAATGCCT.........................................................................................................................................................................................................................................1950.2010100000000
..........................................................................................TT--------GACCTGGTGACTGCCGCA..........................................................................................................................................................................................................2050.2010100000000
....GAAGTT---------------------------------------TTCGGGGGTAATGGGG...............................................................................................................................................................................................................................................................2250.2010000000100
.AAAGAAGTT---------------------------------------TTCGGGGGTAATGGGG...............................................................................................................................................................................................................................................................2550.2010100000000
..............................................................................................................................................................................................................................................CTCACATATTTAGCGGCT----------------TGG.............................................2160.1710100000000
..........................................................................................................................................................................................................................................ACAGCTCACATATTTAGCGGCT----------------TG..............................................2460.1710100000000
.................................................................................................................................................................................................................................................................................GGATATGCCCACTGTAACT............................1960.1710100000000
.............................................................................................................................................................................................................................................GCTCACATATTTAGCGGCT----------------TGG.............................................2260.1710100000000
.......................................................................................................................................................................................................................................................TTAGCGGCT----------------TGGATATGCCC.....................................2060.1710100000000
....................................................................................................................................................................................................................................................TATTTAGCGGCT----------------TGGATATGCCCACTG.................................2760.1710100000000
..........................................................................................................................................................................................................................................ACAGCTCACATATTTAGCGGCT----------------TGGA............................................2660.1710100000000
................................................................................................................................................................................................................................................................................TGGATATGCCCACTGTAACTTCCAGA......................2660.1710100000000
...............................................................................................................................................................................................................................................TCACATATTTAGCGGCT----------------TGGATATGT.......................................2660.1710100000000
............................................................................................................................................................................................................................................AGCTCACATATTTAGCGGCT----------------................................................2060.1710100000000
.......................................................................................................................................................................................................................................................TTAGCGGCT----------------TGGATATGCCCACTG.................................2460.1710100000000
....................................................................................................................................................................................................................................................TATTTAGCGGCT----------------TGGATATGT.......................................2160.1710100000000
...............................................................................................................................................................................................................................................TCACATATTTAGCGGCT----------------TGGATATGC.......................................2660.1710100000000
..........................................................................................................................................................................................................................................ACAGCTCACATATTTAGCGGCT----------------................................................2260.1710000100000
....................................................................................................................................................................................................................................................TATTTAGCGGCT----------------TGGATATGAA......................................2260.1710100000000
....................................................................................................................................................................................................................................................................................TATGCCCACTGTAACTTCCAGA......................2260.1710100000000
....................................................................................................................................................................................................................................................................................TATGCCCACTGTAACTTCCAG.......................2160.1710100000000
........................................................................................................................................................................................................................................................TAGCGGCT----------------TGGATATGCCCACTGT................................2460.1710100000000
..............................................................................................................................................................................................................................................................CT----------------TGGATATGCCCACTGTA...............................1970.1410000000010
droPer2
TTCATG---------------------------------------------------------CAGCTATTTAATTTGAAAGAACCCGTAAGTATTTATATAATTTAT----------------ATACATATAACATAACATATTAAAAATTAATATTTCAGACAAGTGCAATAGCACAGCCTTGCTCAAGCAGCTCAAGCGCGATAACTT-----CGTTCGGTACATCGCAAAACT---CAAACACCTGCTCGCT-----------------------------------ATTG--------AAC------------GASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................AACT---CAAACACCTGCTCGCT-----------------------------------ATT..........................2341.757070000
.........................................................................................................................................................................................................................................AACT---CAAACACCTGCTCGCT-----------------------------------ATTG--------.................2431.003030000
....TG---------------------------------------------------------CAGCTATTTAATTTGAAAGAACCCGT.......................................................................................................................................................................................................................................2820.501010000
..........................................................................................................................................................................................................................................ACT---CAAACACCTGCTCGCT-----------------------------------ATTG--------.................2330.331010000
......................................................................................................................................................................................TTGCTCAAGCAGCTCAAGCGCG....................................................................................................................2230.331000001
.........................................................................................................................................................................................................................................AACT---CAAACACCTGCTCGCT-----------------------------------ATTG--------AAA------------..2730.331010000
.........................................................................................................................................................................................................................................AACT---CAAACACCTGCTCGCT-----------------------------------ATTG--------AA...............2630.331010000
........................................................................................................................................................................................................................................AAACT---CAAACACCTGCTCGCT-----------------------------------ATT..........................2440.251010000
droAna3
TAAATTATTT---------------------------------------AAAAATATAAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-------------------------------------------------------------TACAATACAT---------ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AAATAAAATT---------------------------------------TGCAATAACGATGGGCAAAAATTAAGTGAAGGATGCGTGCATC--------GATTTGGTGACGCTGGAAAAGCTT-----------------------------CCGTTGGCTATTTTTG--------------------------------------ATTCGAAGTGCTTCAAAACGCTA----ACGTCTCAAATATTTTCTGCAC----------------TGGATATGCCGGCTGTTTCATCCAGAAA-------------------ASizeHit CountTotal NormTotal
No Reads
droKik1
AGTGAGCC------------------TGTGGAAAAG-CAA--AAAAAATTGTCATAAAGATGTCGGCCAGTCAAGTGAAAGAGGCTTGCGTG--------CAATTTGTGACAGACGAAAAATTG-----------------------------CCATTTCAAATGTTTG--------------------------------------ATTT-----CTTTTAAGACATTGCAAGACGGAGCAAA-----------T----------------TGGACATGACTCCCATAACAGCGCGGAA--------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CAGTGAGCC-----------------TGTGGAAAAG-CAAAAAAAAAATTGTCATAAAAATGTCGGCCAGTGAAGTGAAAGAGGCTTGCGTG--------CAATTTGTGACAGACGAAAAATTG-----------------------------CCATTTCAAATGTTTG--------------------------------------ATTCTACACCTTTTAAGACATTG----ACGGAGCAAATTTTTAAGGGCT----------------TGAACATGACTCCCATAACAGCGCGGAATGTGAT------------GCSizeHit CountTotal NormTotal
No Reads
droEle1
AGAAAAAGTT---------------------------------------CTCGGTCGTAATGGGGCAATAAGAAGTTAAAAAAGCCTGCATT--------GTCCTGGTGACCGTTGCAAAGGTT-----------------------------CCTTTGGCAGTATTAC--------------------------------------ACTACGAAGGTTTCAAGACGTTA----ACAGCTCAAATATTTAGTGGCT----------------CGGATATGACATCTATAACATCGAGAAAT------------------GSizeHit CountTotal NormTotal
No Reads
droRho1
AAATAAAATA-------------------------------------------------------AAAAATAAAATAAGAAACGCGTTCGTA--------AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droBia1
AAAACAATTG--------------------------------------------------------------ATA-------------------------TAATAAAT----------------AAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATAAAT---------AASizeHit CountTotal NormTotal
No Reads
droTak1
AATATTTCGAACGGCGACATTGGACTTTCAGACCAAAAAAGCAGAAAATTGTCTTGCATATGGACGAACAAGAAATAAAAAAGGCTTGCGTG--------CAATTGGTAACAGTTGAAAAAGTT-----------------------------TCATTCTCGTTTTTTG--------------------------------------ACTCGGAATCCTTTAAAATATTA----ACCGGACAGATCTTCAGGGGTC----------------TGAATATGCTTCCAATAACGTCGACCAATATAATGCATCTTATAACAGSizeHit CountTotal NormTotal
No Reads
droEug1
AAGCCAG-------------------------------------AAAATTGTCATAAAGATGTCGGCCAGTCAAGTGAAAGAGGCTTGCGTG--------CAATTTGTGACAGACGAAAAATTG-----------------------------TCATTTCAAATGTTTG--------------------------------------ATTCTGCACCTTTTAAGACATTG----ACGGACCAAATTTATAAGGGCT----------------TGCACATGACTCCCGTAACAGCGCGGAA--------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/17/2015 at 10:08 PM