dwi_2177

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GAAACGTGACTTGGACGCCTTTTTGTGCCAAGAAAATGAGAAACAAAGACTTGACTCCCAATACCGTCTCAGTCGTCACGTGTTGCATAATCGACCACCACCCTAATTTCAATTGAACTAACTTTATCCTCACTAATCCACCGTCCATTGTCTTTTATTTTGTTTATGTGAAATTCTTATATGGGTTTATTTTTCTTTTAGCTCAATTGACGACGAAATCGACGGGAATTGCATTGTGCGAGCTCGTGGTT ************************************************((((.....((..((((...((...(((((((..((((((..(((......................................................)))..)))...))).)))))))....))...))))..)).........))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V117 male body	V118 embryo	M045 female body
......................TTGTGCCAAGAAAATGAGAAAC...............................................................................................................................................................................................................	22	0	1	1.00	1	0	1	0
.................................................................................................................................................................GTTTATGTGAAATTCTTATATGGGT.................................................................	25	0	1	1.00	1	0	1	0
................................................................................................................................................................................................................GACGACGAAATCGACGGGAATTG....................	23	0	1	1.00	1	1	0	0
............................................................................................................................................................................................................................GACGGGAATTGCATTGTGC............	19	0	1	1.00	1	1	0	0
.............................................................................................................................................................................................................ATTGACGACGAAATCGACGGGAA.......................	23	0	1	1.00	1	1	0	0
.......................................................................................................................................................................................................................................CATTGTGCGAGCTCGTGGT.	19	0	1	1.00	1	0	1	0
......................................................................................................................................................................................................................GAAATCGACGGGAATTGC...................	18	0	1	1.00	1	1	0	0
.............................................................................................................................................................................................................ATTGACGACGAAATCGACGGGAATTG....................	26	0	1	1.00	1	0	1	0
...................................................................................................................................................................................................................................ATTGCATTGTGCGAGCTCGTGGTT	24	0	1	1.00	1	1	0	0
............................................................................................................................................................................................................................GACGGGAATTTCATTGTGCGAGC........	23	1	1	1.00	1	0	1	0
........................................................................................AATCGACCATCACCCGAAT................................................................................................................................................	19	2	3	0.33	1	0	0	1

CTTTGCACTGAACCTGCGGAAAAACACGGTTCTTTTACTCTTTGTTTCTGAACTGAGGGTTATGGCAGAGTCAGCAGTGCACAACGTATTAGCTGGTGGTGGGATTAAAGTTAACTTGATTGAAATAGGAGTGATTAGGTGGCAGGTAACAGAAAATAAAACAAATACACTTTAAGAATATACCCAAATAAAAAGAAAATCGAGTTAACTGCTGCTTTAGCTGCCCTTAACGTAACACGCTCGAGCACCAA ************************************************((((.....((..((((...((...(((((((..((((((..(((......................................................)))..)))...))).)))))))....))...))))..)).........))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V119 head	V117 male body	M045 female body	V118 embryo
..............................................................................................GGTGGTGGGATTAAAGTTAAC........................................................................................................................................	21	0	1	1.00	1	1	0	0	0
.....................................................................................GAATTAGCTGGTTGTGGGAA..................................................................................................................................................	20	3	5	0.60	3	0	2	1	0
.....................................................................................GAATTAGCTGGTTGTGGGA...................................................................................................................................................	19	2	2	0.50	1	0	1	0	0
......................................................................................AATTAGCTGGTTGTGGGA...................................................................................................................................................	18	2	7	0.43	3	0	0	2	1
..........................................................................................AGGTGGTCGTGGGATTAA...............................................................................................................................................	18	2	5	0.20	1	1	0	0	0
......................................................................................TATTAGTTGGTGTTGGGA...................................................................................................................................................	18	2	13	0.08	1	0	1	0	0
................CGGAAAAAGACGGGTCTTG........................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	1	0

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004822:1545166-1545416 +	dwi_2177	GAAACGTGACTTGGACGCCTTTTT--GTG------------------CCAAGAAAA-------T--GAGAAACAA----------AGACTTGACTC-----------------CCAATACCGTCTCAGTCGTC-ACGTGTTGCATAATC-------GACCAC--CAC------------CCTAA------------T-------------------------------------------TTCAATTGAACTAACTTTATCCTCACTAATCCAC---------------------CGTCCATTGTCTTTTATTTT-----GTTTATG-TGAAATTCTTA-----TATGGGTT-----T------------ATT------TTTCTTTTAGCTCAATTGACGACGAAATCGACGGGAATTGCATTGTGCGAGCTCGTGGTT
droVir3	scaffold_12875:6416716-6417021 +	dvi_5499	GAAACGTGACTTGAG--------------------------------ACAAGAAACTTAAA--C--GAAAAACAAAACAACAAAAAGAACTAAATAAC-----------AAGTCCAAAGACGCCCAAGTCTAG-CCCCGTTGCATAACTAAGGCGCAGCTTT--AGGGT-CTAAGCAGGGTCTGGTAAATAGAG-CT-------------------------------------------CTCAG-----------CTCCCCTTACTATTCTACGAAATCGAATGAAATTGTAATTGTAAACTGTAATCAAATTT-----TTTT-CC-TGGAATTTTTC-TTTTTTCGCTTTGTCTT-------------ACC------TCTTTTACAGCTCAATTGACGACGAGGTGGACGGCAATTGCATTGTGCGTGCCCGTGGTT
droMoj3	scaffold_6496:23600028-23600317 -		GAAACGTGACTTCAG--------------------------------AGAAGAAACTTAAA---------AA-----------------CTATATACCTCGGTATACAAAATTCCACAGACGCCCAAGTCTATTACAGG-------------GCACAGCT-T-TGGAA------------TTTGTCAAATGTAG-CTTCTATATACAAGCAAACACATTTATAAATATGTATGCATATGGCTTAG-----------CTCCTCTTACTTTACAACGAATTTCACTGAAATT------GTAAACTGAAACTGAACTTTGCATTCTT-TC-TGG--------------------------T------------ATT------TTTCTTACAGCTCAATTGACGACGAGGTGGACGGCAATTGCATCGTGCGTGCTCGTGGTT
droGri2	scaffold_15112:1304259-1304324 +		TTAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTACAGTTCAATTGACGACGAGGTGGACGGCAATTGCATTGTTCGTGCCCGTGGTT
dp5	3:19633030-19633085 +		T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGCTCAATCGACGACGAGGTCGACGGCAACTGCATCGTGCGCGCCCGCGGAC
droPer2	scaffold_37:634376-634431 +		T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGCTCAATCGACGACGAGGTCGACGGCAACTGCATCGTGCGCGCCCGCGGAC
droAna3	scaffold_13266:12634275-12634348 +		A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTA------------TTTTACT--TCTCATCCAGCTCAATTGACGACGAGATCGACGGCAACTGCATTGTGCGGGCCAGAGGCT
droBip1	scf7180000396372:132131-132294 +		AGAACGTGACTGCGACGCCGTTTT--GTG-----------------------------------------CCC--------------------------------------------------------CATC-ACGTGTTGCATAACA--------GCTCCTTGGG------------GAGGAG-------AGCTTT--------------------------------------------------------------------------------------------------------------------------------------------------TAAAGATTTTCCTAACCGATTCCACATTTAACT--CCACTTGCAGCTCAATTGACGACGAGATCGACGGCAACTGCATTGTTCGTGCCAGAGGCT
droKik1	scf7180000302682:1707264-1707331 -		GGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT------------CTT------TTACCCGCAGCTCAATTGACGACGAGATCGACGGCAACTGCATAGTGCGGGCCAGAGGAT
droFic1	scf7180000453809:41748-41808 -		------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------TTCTTTACAGCTCCATTGACGACGAGGTCGACGGGAATTGCATTGTGCGGGCCAGAGGAC
droEle1	scf7180000491107:519794-519970 -		GGAACGTGACTGCGACGCCTTTTT--CTCCT------------TA-TCCAC----------GAA--GAGGTCC--------------------------------------------------------CATT-ACGAGTTGCATAACA-------CGCCTT--TGA------------AAAC---------GG-TTTT------------------------------------------------------------------------------------------------------------------------------CA--AGAAGCCAGA-AACTAATGTATATTTCAA------------TATC------CCACCACAGCTCCATTGACGACGAGGTCGACGGTAATTGCATAGTACGGGCTAGAGGAT
droRho1	scf7180000779911:573353-573528 +		GGAACGTGACTGCGACGCCTTTTT--CTCCT------------TA-CCCAC----------GAA--GAGGTCC--------------------------------------------------------CATT-ACGAGTTGCATAAGT-------CGCTTT--AGT------------AAAA---------GG-TTCT------------------------------------------------------------------------------------------------------------------------------GC---CAAACTAGA-AACTTACAGAATTTCTTA------------AAT------CTCATCACAGCTCCATTGACGACGAGATCGACGGTAACTGCATAGTGCGGGCCAGAGGAT
droBia1	scf7180000302292:4111999-4112077 +		---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGATTTTCCCA------------TCCTTT---CCCCCCACAGCTCCATCGACGACGAGGTCGACGGCAACTGCATCGTGAGGGCCAGAGGAT
droTak1	scf7180000415241:139441-139626 +		GGAACGTGACTGCGACGCCTTTTCTCCTCCT------------GG-AAAAA----------GAGAAGAGGTCC--------------------------------------------------------------CAAGTTGCATAACC-------CGATGG--CGG------------GCTAGG--------G-TTTT------------------------------------------------------------------------------------------------------------------------------CCCAAGAAGCTCAAGAACTAACGGATTTTTCTA------------TTTTCTATATATTCCACAGCTCCATTGACGACGAGGTCGACGGCAACTGTATAGTGAGGGCCAGAGGAT
droEug1	scf7180000409672:438995-439191 -		GGAACGTGACTGCGACGCCTTTTT--CTCCTACTTCTCCTACTTACCCCAA----------GAAAAGAGGTCC-------------------------------------------------------CCACC-ACATGTTGCATAACC-------TGCTTT--TTG------------GATATG-------GG-TTTT------------------------------------------------------------------------------------------------------------------------------CC--AATAGCTCAA-AACTAATGGATTTTCTTGAT----------TAT------TTCTCCACAGCTCCATAGACGACGAAATCGACGGTAATTGTATAGTAAGGGCCAGAGGAT
dm3	chr2R:11551890-11552072 -		GGAACGTGACTGCGACGCCTTTTT--CTCCT------------TG-CCCAA----------GAG--CTGGGCC--------------------------------------------------------CATT-ACGTGTTGCATAACC-------CCCTGATTCGG------------GATAGGT------GG-TTTT------------------------------------------------------------------------------------------------------------------------------TC--AAAAACACCA-TGCTTACGGATTTTCCCC-----------ATTTT------CCTCCACAGCTCCATAGACGACGAAGTCGACGGTAACTGCATCGTAAGGGCCAGAGGAT
droSim2	2r:12217424-12217612 -		GGAACGTGACTGCGACGCCTTTTT--CTCCT------------TG-CCCAA----------GAG--GAGGGCC--------------------------------------------------------AAAC-ACGTGTTGCATAACC-------CCCTCATTCGGGA-C------GGGATAGGT------GG-TTTT------------------------------------------------------------------------------------------------------------------------------CCAAAAAAACATCA-TACTTACGGATTTTACCA------------TTTT------CCTCCACAGCTCCATAGACGACGAAGTCGACGGTAACTGCATCGTGAGGGCCAGAGGAT
droSec2	scaffold_1:9044980-9045162 -		GGAACGTGACTGTGACGCCTTTTT--CTCCT------------TG-CCCAA----------GAG--GAGGGCC--------------------------------------------------------AAAC-ACGTGTTGCATAACC-------CCCTGATTCGG------------GATAGGT------GG-TTTT------------------------------------------------------------------------------------------------------------------------------CC-AAAAAACACCA-TACTTACGGATTTTCCCA------------TTTT------CCTCCACAGCTCCATAGACGACGAAGTCGACGGTAACTGCATCGTGAGGGCCAGAGGAT
droYak3	2R:17438496-17438683 +		GGAACGTGACTGCGACGCCTTTTT--CTCCT------------TG-CCCAA----------GAAAAGGG-GTC--------------------------------------------------------CAAC-ACGTGTTGCATAACC-------CGCTTT--CGGTATC------CCGATAGGAA-----AG-TTTT------------------------------------------------------------------------------------------------------------------------------CC--ACCAGCACCG-TACTTACAGCCTTTCCCA------------TCTT------TTCCCACAGCTCCATTGACGACGAAGTCGACGGCAACTGCATTGTGAGGGCCAGAGGAT
droEre2	scaffold_4845:14311516-14311698 +		GGAACGTGACTGCGACGCCTTTTT--CTCCT------------TG-CCCAA----------GAA--GAGGGCC----------------------------------------------------CA-GCAAC-ACGTGTTGCATAAGC-------CGCATT--CGG------------GATAGGT------AG-TTTC------------------------------------------------------------------------------------------------------------------------------CC--AGAAGCACCA-TACTTACGGATTTTCCCA------------TCTT------TCTGCACAGCTCCATTGACGACGAGGTCGACGGCAACTGCATAGTGAGGGCCAGAGGAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

GAAACGTGACTTGGACGCCTTTTT--GTG------------------CCAAGAAAA-------T--GAGAAACAA----------AGACTTGACTC-----------------CCAATACCGTCTCAGTCGTC-ACGTGTTGCATAATC-------GACCAC--CAC------------CCTAA------------T-------------------------------------------TTCAATTGAACTAACTTTATCCTCACTAATCCAC---------------------CGTCCATTGTCTTTTATTTT-----GTTTATG-TGAAATTCTTA-----TATGGGTT-----T------------ATT------TTTCTTTTAGCTCAATTGACGACGAAATCGACGGGAATTGCATTGTGCGAGCTCGTGGTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................TT--GTG------------------CCAAGAAAA-------T--GAGAAAC..............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................GTTTATG-TGAAATTCTTA-----TATGGGT........................................................................................	25	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................GACGACGAAATCGACGGGAATTG....................	23	1	1.00	1	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................GACGGGAATTGCATTGTGC............	19	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................ATTGACGACGAAATCGACGGGAA.......................	23	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGTGCGAGCTCGTGGT.	19	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................GAAATCGACGGGAATTGC...................	18	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................ATTGACGACGAAATCGACGGGAATTG....................	26	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCATTGTGCGAGCTCGTGGTT	24	1	1.00	1	0	0	1	0	0

droVir3

GAAACGTGACTTGAG--------------------------------ACAAGAAACTTAAA--C--GAAAAACAAAACAACAAAAAGAACTAAATAAC-----------AAGTCCAAAGACGCCCAAGTCTAG-CCCCGTTGCATAACTAAGGCGCAGCTTT--AGGGT-CTAAGCAGGGTCTGGTAAATAGAG-CT-------------------------------------------CTCAG-----------CTCCCCTTACTATTCTACGAAATCGAATGAAATTGTAATTGTAAACTGTAATCAAATTT-----TTTT-CC-TGGAATTTTTC-TTTTTTCGCTTTGTCTT-------------ACC------TCTTTTACAGCTCAATTGACGACGAGGTGGACGGCAATTGCATTGTGCGTGCCCGTGGTT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................GACGACGAGGTGGACGGCAATTGC...................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CT-------------------------------------------CTCAG-----------CTCCCCTTACTA...........................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................GAACTAAATAAC-----------AAGTCCAAAGACGCC...........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................CTAAGCAGGGTCTGGTAAATA........................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................CTAAGCAGGGTCTGGTAAATAGAG-CT-------------------------------------------.......................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCATTGTGCGTGCCCGTG...	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TCAATTGACGACGAGGTG...............................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................TACGAAATCGAATGAAATTG....................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................CGACGAGGTGGACGGCAATTGC...................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GAAACGTGACTTCAG--------------------------------AGAAGAAACTTAAA---------AA-----------------CTATATACCTCGGTATACAAAATTCCACAGACGCCCAAGTCTATTACAGG-------------GCACAGCT-T-TGGAA------------TTTGTCAAATGTAG-CTTCTATATACAAGCAAACACATTTATAAATATGTATGCATATGGCTTAG-----------CTCCTCTTACTTTACAACGAATTTCACTGAAATT------GTAAACTGAAACTGAACTTTGCATTCTT-TC-TGG--------------------------T------------ATT------TTTCTTACAGCTCAATTGACGACGAGGTGGACGGCAATTGCATCGTGCGTGCTCGTGGTT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................CGACGAGGTGGACGGCAAT......................	19	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................CAATTGACGACGAGGTGGAC............................	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................TATGCATATGGCTTAG-----------CTCCT..................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGACGGCAATTGCATCGTGCGTG.........	26	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................CAATTGACGACGAGGTGGACG...........................	21	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................AA------------TTTGTCAAATGTAG-CTTCTC..............................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................TATGTATGCATATGGCTTAG-----------C......................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................TGGACGGCAATTGCATCGTGC............	21	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGTGCGTGCTCGTGGTT	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................ATACAAAATTCCACAGACGCC...........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0

droGri2

TTAATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTTACAGTTCAATTGACGACGAGGTGGACGGCAATTGCATTGTTCGTGCCCGTGGTT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................ATTGACGACGAGGTGGACG...........................	19	1	1.00	1	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................CAATTGACGACGAGGTGGACG...........................	21	1	1.00	1	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................ACGACGAGGTGGACGGCA........................	18	1	1.00	1	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................GTTCAATTGACGACGAGGTGGACG...........................	24	1	1.00	1	0	1

dp5

T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGCTCAATCGACGACGAGGTCGACGGCAACTGCATCGTGCGCGCCCGCGGAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................ATCGACGACGAGGTCGACGGC.........................	21	1	3.00	3	0	0	0	0	0	0	0	3	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCGTGCGCGCCCGCGGAC	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................CAATCGACGACGAGGTCGACGGC.........................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCGTGCGCGCCCGCGG..	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGCGCGCCCGCGGAC	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCATCGTGCGCGCCCGCGGAC	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAGCTCAATCGACGACGAGGTCGACGGCAACTGCATCGTGCGCGCCCGCGGAC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................CGACGAGGTCGACGGCAACTG....................	21	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GACGAGGTCGACGGCAACT.....................	19	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................CTCAATCGACGACGAGGTCGACGGC.........................	25	1	1.00	1	1	0	0	0	0	0

droAna3

A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCCTA------------TTTTACT--TCTCATCCAGCTCAATTGACGACGAGATCGACGGCAACTGCATTGTGCGGGCCAGAGGCT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................................................................................................................................................................................................................................................AATTGACGACGAGATCGACGGC.........................	22	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................ACGACGAGATCGACGGCAACT.....................	21	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGATCGACGGCAACTGC...................	20	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................CTCAATTGACGACGAGATCGACGGC.........................	25	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCATTGTGCGGGCCAG.....	20	1	1.00	1	1	0	0	0	0	0

droBip1

AGAACGTGACTGCGACGCCGTTTT--GTG-----------------------------------------CCC--------------------------------------------------------CATC-ACGTGTTGCATAACA--------GCTCCTTGGG------------GAGGAG-------AGCTTT--------------------------------------------------------------------------------------------------------------------------------------------------TAAAGATTTTCCTAACCGATTCCACATTTAACT--CCACTTGCAGCTCAATTGACGACGAGATCGACGGCAACTGCATTGTTCGTGCCAGAGGCT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT------------CTT------TTACCCGCAGCTCAATTGACGACGAGATCGACGGCAACTGCATAGTGCGGGCCAGAGGAT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------TTCTTTACAGCTCCATTGACGACGAGGTCGACGGGAATTGCATTGTGCGGGCCAGAGGAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGAACGTGACTGCGACGCCTTTTT--CTCCT------------TA-TCCAC----------GAA--GAGGTCC--------------------------------------------------------CATT-ACGAGTTGCATAACA-------CGCCTT--TGA------------AAAC---------GG-TTTT------------------------------------------------------------------------------------------------------------------------------CA--AGAAGCCAGA-AACTAATGTATATTTCAA------------TATC------CCACCACAGCTCCATTGACGACGAGGTCGACGGTAATTGCATAGTACGGGCTAGAGGAT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGAACGTGACTGCGACGCCTTTTT--CTCCT------------TA-CCCAC----------GAA--GAGGTCC--------------------------------------------------------CATT-ACGAGTTGCATAAGT-------CGCTTT--AGT------------AAAA---------GG-TTCT------------------------------------------------------------------------------------------------------------------------------GC---CAAACTAGA-AACTTACAGAATTTCTTA------------AAT------CTCATCACAGCTCCATTGACGACGAGATCGACGGTAACTGCATAGTGCGGGCCAGAGGAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGATTTTCCCA------------TCCTTT---CCCCCCACAGCTCCATCGACGACGAGGTCGACGGCAACTGCATCGTGAGGGCCAGAGGAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGAACGTGACTGCGACGCCTTTTCTCCTCCT------------GG-AAAAA----------GAGAAGAGGTCC--------------------------------------------------------------CAAGTTGCATAACC-------CGATGG--CGG------------GCTAGG--------G-TTTT------------------------------------------------------------------------------------------------------------------------------CCCAAGAAGCTCAAGAACTAACGGATTTTTCTA------------TTTTCTATATATTCCACAGCTCCATTGACGACGAGGTCGACGGCAACTGTATAGTGAGGGCCAGAGGAT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GGAACGTGACTGCGACGCCTTTTT--CTCCTACTTCTCCTACTTACCCCAA----------GAAAAGAGGTCC-------------------------------------------------------CCACC-ACATGTTGCATAACC-------TGCTTT--TTG------------GATATG-------GG-TTTT------------------------------------------------------------------------------------------------------------------------------CC--AATAGCTCAA-AACTAATGGATTTTCTTGAT----------TAT------TTCTCCACAGCTCCATAGACGACGAAATCGACGGTAATTGTATAGTAAGGGCCAGAGGAT	Size	Hit Count	Total Norm	Total
No Reads

dm3

GGAACGTGACTGCGACGCCTTTTT--CTCCT------------TG-CCCAA----------GAG--CTGGGCC--------------------------------------------------------CATT-ACGTGTTGCATAACC-------CCCTGATTCGG------------GATAGGT------GG-TTTT------------------------------------------------------------------------------------------------------------------------------TC--AAAAACACCA-TGCTTACGGATTTTCCCC-----------ATTTT------CCTCCACAGCTCCATAGACGACGAAGTCGACGGTAACTGCATCGTAAGGGCCAGAGGAT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................CGGTAACTGCATCGTAAGGGC........	21	1	30.00	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	5	3	2	4	2	2	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGACGGTAACTGCATCGT..............	21	1	15.00	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	9	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CGACGGTAACTGCATCGTAAG...........	21	1	15.00	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................CGACGAAGTCGACGGTAACTG....................	21	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACTGCATCGTAAGGGCC.......	21	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGTAAGGGCCAGAGGA.	19	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	0	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................CGACGAAGTCGACGGTAACTGCA..................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCATCGTAAGGGCCAGAGG..	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TAGACGACGAAGTCGACGGTAACTGCAT.................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACTGCATCGTAAGGGCCAGT....	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................CGGTAACTGCATCGTAAGGGG........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTAACTGCATCGTAAGGGCCAGA....	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGTCGACGGTAACTGCAC.................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCATCGTAAGGGCCAGAGGA.	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TAGACGACGAAGTCGACGGTAACTGC...................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CACAGCTCCATAGACGACGAA..................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droSim2

GGAACGTGACTGCGACGCCTTTTT--CTCCT------------TG-CCCAA----------GAG--GAGGGCC--------------------------------------------------------AAAC-ACGTGTTGCATAACC-------CCCTCATTCGGGA-C------GGGATAGGT------GG-TTTT------------------------------------------------------------------------------------------------------------------------------CCAAAAAAACATCA-TACTTACGGATTTTACCA------------TTTT------CCTCCACAGCTCCATAGACGACGAAGTCGACGGTAACTGCATCGTGAGGGCCAGAGGAT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGACGGTAACTGCATCGT..............	21	1	55.00	55	42	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACTGCATCGTGAGGGCC.......	21	1	26.00	26	18	7	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................CGGTAACTGCATCGTGAGGGC........	21	1	11.00	11	8	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCATCGTGAGGGCCAGAGG..	21	1	10.00	10	6	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTGCATCGTGAGGGCC.......	20	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................CGGTAACTGCATCGTGAGGGCC.......	22	1	6.00	6	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGACGGTAACTGCATCGG..............	21	1	6.00	6	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAACTGCATCGTGAGGGCC.......	19	1	6.00	6	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TCCATAGACGACGAAGTCGACG...........................	22	1	5.00	5	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTGCATCGTGAGGGC........	19	1	4.00	4	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTGCATCGTGAGGGCCT......	21	1	4.00	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAACTGCATCGTGAGGGCCAGT....	22	1	3.00	3	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAACTGCATCGTGAGGGC........	18	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACTGCATCGTGAGGGC........	20	1	3.00	3	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................CGACGAAGTCGACGGTAACTGC...................	22	1	3.00	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCATCGTGAGGGCCT......	19	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAACTGCATCGTGAGGGCCT......	20	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGACGGTAACTGCATCGC..............	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CGACGGTAACTGCATCGTG.............	19	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCATCGTGAGGGCCAGAGG..	22	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........ACTGCGACGCCTTTTT--CTCCT------------............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAGTCGACGGTAACTGC...................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACTGCATCGTGAGGGCCT......	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................ACATCA-TACTTACGGATTTTAC...................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CA-TACTTACGGATTTTACCA------------TT...................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCGACGGTAACTGCA..................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
GGAACGTGACTGCGACGCCTT..................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GACGAAGTCGACGGTAAC......................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................CGGATTTTACCA------------TTTT------CCTCC......................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCATCGTGAGGGCCAGA....	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTGCATCGTGAGGGCCC......	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................AAAAAACATCA-TACTTACGGAT........................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................CAAAAAAACATCA-TACTTACGG..........................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGTGAGGGCCAGAGGA.	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................ACGGTAACTGCATCGTGAGGG.........	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................CGGGA-C------GGGATAGGT------GG-T...................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................C-ACGTGTTGCATAACC-------CCCTC......................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCATCGTGAGGGCCG......	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GACGCCTTTTT--CTCCT------------TG-C........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................ATTCGGGA-C------GGGATAGGT------GC-....................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................GAGGGCC--------------------------------------------------------AAAC-ACGTGTTGCAT......................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.GAACGTGACTGCGACGCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TTTTACCA------------TTTT------CCTCCACAGC.................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGTCGACGGTAACTGCAT.................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCATCGTGAGGGCCAGT....	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................CATTCGGGA-C------GGGATAGGT------G......................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCATCGTGAGGGCCAGAGGA.	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGACGGTAACTGCATCGTGA............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................ACATCA-TACTTACGGATTTTA....................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................CTCCATAGACGACGAAGTCGAC............................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCATCGTGAGGGCCAGAGTT.	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTGCATCGTGAGGGCCA......	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................AA----------GAG--GAGGGCC--------------------------------------------------------AAA...................................................................................................................................................................................................................................................................................................................	15	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCATCGTGAGGGCT.......	18	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GGAACGTGACTGTGACGCCTTTTT--CTCCT------------TG-CCCAA----------GAG--GAGGGCC--------------------------------------------------------AAAC-ACGTGTTGCATAACC-------CCCTGATTCGG------------GATAGGT------GG-TTTT------------------------------------------------------------------------------------------------------------------------------CC-AAAAAACACCA-TACTTACGGATTTTCCCA------------TTTT------CCTCCACAGCTCCATAGACGACGAAGTCGACGGTAACTGCATCGTGAGGGCCAGAGGAT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGACGGTAACTGCATCGT..............	21	1	6.00	6	0	4	0	2
...................................................................AGGGCC--------------------------------------------------------AAAC-ACGTGTTGCAT......................................................................................................................................................................................................................................................................................................	21	1	6.00	6	0	2	0	4
............................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTGCATCGTGAGGGCCA......	21	1	5.00	5	1	0	0	4
GGAACGTGACTGTGACGCCTT..................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	4	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................CGACGAAGTCGACGGTAACTG....................	21	1	3.00	3	3	0	0	0
..................................................A----------GAG--GAGGGCC--------------------------------------------------------AAAC-ACGTGT...........................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	3
.........................................................................................................................................................................................................................................................................................................................................................................................................ATAGACGACGAAGTCGACGGT.........................	21	1	3.00	3	0	2	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTGCATCGTGAGGGC........	19	1	2.00	2	0	0	0	2
............................................................................................................................................................................................................................................................................................................................................................................................................................GTAACTGCATCGTGAGGGCC.......	20	1	2.00	2	2	0	0	0
............TGACGCCTTTTT--CTCCT------------TG-CC.......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAACTGCATCGTGAGGGCCAGT....	22	1	2.00	2	1	1	0	0
........................................................................C--------------------------------------------------------AAAC-ACGTGTTGCATAACC-------C..........................................................................................................................................................................................................................................................................................	21	1	2.00	2	1	1	0	0
..............................................................................................................................................................CTGATTCGG------------GATAGGT------GG-TTT.................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCGTGAGGGCCAGAGGAT	21	1	2.00	2	0	0	0	2
...............................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCATCGTGAGGGCCAGA....	20	1	1.00	1	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................C-AAAAAACACCA-TACTTACGG..........................................................................................	21	1	1.00	1	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................GACGGTAACTGCATCGTGAGG..........	21	1	1.00	1	1	0	0	0
....................................................................................................................................C-ACGTGTTGCATAACC-------CCCTG......................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATCGTGAGGGCCAGAGG..	20	1	1.00	1	1	0	0	0
............................................................................................................................................................CCCTGATTCGG------------GATAGGT------GG-TT..................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1
................................................CAA----------GAG--GAGGGCC--------------------------------------------------------AAAC-ACGT.............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
.........CTGTGACGCCTTTTT--CTCCT------------............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................ATAGACGACGAAGTCGACGGTA........................	22	1	1.00	1	1	0	0	0
..............................................................................................................................................................CTGATTCGG------------GATAGGT------GG-T...................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0
............................................................................................................................................................CCCTGATTCGG------------GATAGGT------GG-T...................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................GACGAAGTCGACGGTAACTGC...................	21	1	1.00	1	1	0	0	0
........................................................................C--------------------------------------------------------AAAC-ACGTGTTGCATAACC-------...........................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................CTCCATAGACGACGAAGTCG..............................	20	1	1.00	1	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................TCCACAGCTCCATAGACGACG....................................	21	1	1.00	1	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................TT------CCTCCACAGCTCCATAGAC........................................	21	1	1.00	1	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CGACGGTAACTGCATCGTGAGGGC........	24	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................TACTTACGGATTTTCCCA------------TT...................................................................	20	1	1.00	1	1	0	0	0
................................................CAA----------GAG--GAGGGCC--------------------------------------------------------AAAC-ACG..............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
...................................................................................................................................................................TCGG------------GATAGGT------GG-TTTT------------------------------------------------------------------------------------------------------------------------------CC-A..............................................................................................................	20	1	1.00	1	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................A-TACTTACGGATTTTCCCA------------TT...................................................................	21	1	1.00	1	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................TTTTCCCA------------TTTT------CCTCCACAGC.................................................	22	1	1.00	1	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCATCGTGAGGGCCAGA....	21	1	1.00	1	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TCCATAGACGACGAAGTCGACG...........................	22	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAACTGCATCGTGAGGGCCT......	20	1	1.00	1	0	0	0	1
..............................................................................................................................................CATAACC-------CCCTGATTCGG------------GAT.................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAACTGCATCGTGAGGGC........	18	1	1.00	1	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAGTCGACGGTAACTGCAT.................	22	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................GGTAACTGCATCGTGAGGGCC.......	21	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAACTGCATCGTGAGGGCCAG.....	21	1	1.00	1	1	0	0	0
........................................................................................................................................GTGTTGCATAACC-------CCCTGATT...................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
.......................................................................................................................................CGTGTTGCATAACC-------CCCTGAT....................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
.............................................................GAG--GAGGGCC--------------------------------------------------------AAAC-ACGTGTTGC........................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1
......TGACTGTGACGCCTTTTT--CTCC.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
.........................................................................................................................................TGTTGCATAACC-------CCCTGATTCG.................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCATCGTGAGGGCCAGAGG..	21	1	1.00	1	1	0	0	0
....................................................................................................................................................C-------CCCTGATTCGG------------GATAGGT------GG-T...................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1
...................................................................AGGGCC--------------------------------------------------------AAAC-ACGTGTTGCATT.....................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................CGACGGTAACTGCATCGTGAG...........	21	1	1.00	1	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TAGACGACGAAGTCGACGGT.........................	20	1	1.00	1	0	0	0	1
.................................................................................................................................................................ATTCGG------------GATAGGT------GG-TTTT------------------------------------------------------------------------------------------------------------------------------CC-...............................................................................................................	21	1	1.00	1	0	0	0	1

droYak3

GGAACGTGACTGCGACGCCTTTTT--CTCCT------------TG-CCCAA----------GAAAAGGG-GTC--------------------------------------------------------CAAC-ACGTGTTGCATAACC-------CGCTTT--CGGTATC------CCGATAGGAA-----AG-TTTT------------------------------------------------------------------------------------------------------------------------------CC--ACCAGCACCG-TACTTACAGCCTTTCCCA------------TCTT------TTCCCACAGCTCCATTGACGACGAAGTCGACGGCAACTGCATTGTGAGGGCCAGAGGAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGTCGACGGCAACTGCATTGTGAG...........	27	1	7.00	7	0	0	0	0	0	0	0	0	0	0	7
..............................................................................................................................................................................................................................................................................................................................................................................................................CGACGAAGTCGACGGCAACTGCATTGTGAG...........	30	1	5.00	5	0	0	0	0	0	0	0	0	0	0	5
..............................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCATTGTGAGGGCCAGA....	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................GCTCCATTGACGACGAAGTCGAC............................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CGACGGCAACTGCATTGTGAGG..........	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCATTGTGAGGGCCAGAGG..	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAACTGCATTGTGAGGGC........	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................GGG-GTC--------------------------------------------------------CAAC-ACGTGTTGC........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

GGAACGTGACTGCGACGCCTTTTT--CTCCT------------TG-CCCAA----------GAA--GAGGGCC----------------------------------------------------CA-GCAAC-ACGTGTTGCATAAGC-------CGCATT--CGG------------GATAGGT------AG-TTTC------------------------------------------------------------------------------------------------------------------------------CC--AGAAGCACCA-TACTTACGGATTTTCCCA------------TCTT------TCTGCACAGCTCCATTGACGACGAGGTCGACGGCAACTGCATAGTGAGGGCCAGAGGAT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................ATTGACGACGAGGTCGACGGCA........................	22	1	2.00	2	2	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTGCATAGTGAGGGCCA......	21	1	2.00	2	0	0	0	0	0	2	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCATAGTGAGGGCCAG.....	20	1	2.00	2	0	0	0	0	2	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................ATTGACGACGAGGTCGACGGC.........................	21	1	2.00	2	1	0	1	0	0	0	0
..................................................................................................................................AAC-ACGTGTTGCATAAGC-------C..........................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................CATAGTGAGGGCCAGAGGA.	19	1	1.00	1	0	0	0	0	1	0	0
............CGACGCCTTTTT--CTCCT------------TG-CC.......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCATAGTGAGGGCCAGAGGT.	22	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCATAGTGAGGGCCAGAGG..	21	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GACGAGGTCGACGGCAACTGC...................	21	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATAGTGAGGGCCAGAGGAT	22	1	1.00	1	0	0	0	0	1	0	0
.....................TTT--CTCCT------------TG-CCCAA----------GAA--GA...................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CGACGGCAACTGCATAGTGAG...........	21	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................AAGC-------CGCATT--CGG------------GATAGGT------A......................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCATAGTGAGGGCCA......	19	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................TTGCATAAGC-------CGCATT--CGG------------GA..................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
................................................CAA----------GAA--GAGGGCC----------------------------------------------------CA-GCAAC-A................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................CTTACGGATTTTCCCA------------TCTT------T..........................................................	21	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................CATTGACGACGAGGTCGACGGC.........................	22	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................TTGCATAAGC-------CGCATT--CGG------------GAT.................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................GAGGTCGACGGCAACTGCATAGT..............	23	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................TGTTGCATAAGC-------CGCATT--CGG------------....................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................CAACTGCATAGTGAGGGCCAGA....	22	1	1.00	1	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTGCATAGTGAGGGT........	19	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CGACGGCAACTGCATAGTGAGGGC........	24	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................CCATTGACGACGAGGTCGACGG..........................	22	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................ATTGACGACGAGGTCGACGGCT........................	22	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAGTGAGGGCCAGAGG..	19	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGTCGACGGCAACTGCAT.................	21	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCATAGTGAGGGCCAGAG...	20	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCATAGTGAGGGCCAGA....	21	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTGCATAGTGAGGG.........	18	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................CATTGACGACGAGGTCGACGG..........................	21	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................CGACGAGGTCGACGGCAACTG....................	21	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................ATTGACGACGAGGTCGACGG..........................	20	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTGCATAGTGAGGGC........	19	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................TAGGT------AG-TTTC------------------------------------------------------------------------------------------------------------------------------CC--AGAAGCA.......................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0

-14.52	-14.02	-14.02	-14.02

dwi_2177

scf2_1100000004822:1545216-1545366 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads