ID:

dwi_2138

 Coordinate:

scf2_1100000004768:2626775-2626925 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.5 -18.5 -18.1 -18.1

Flybase annnotation

exon [dwil_GLEANR_3099:3]; CDS [Dwil\GK20326-cds]; intron [Dwil\GK20326-in]

No Repeatable elements found

mature
  1. scf2_1100000004768:2625425-2625445 +
  2. dwi_2138  scf2_1100000004768:2626870-2626890 -
star
  1. scf2_1100000004768:2625494-2625514 +
  2. dwi_2138  scf2_1100000004768:2626801-2626821 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------######--------------------------------------------
TTTTTGGAGACTTTTTGGCTATTTTTCTGACTCTACCCCTTACAAAAATTCGAGTGATGTTTTTGACAGGATATTGAAAATCCTTGAATGCAGATCGATAGTTCTGATCCTGGAGGTCAAAAAAAGGTGTGTCCTGTCGAAATCGGTCAATGTCCTACAGAGATATGGCCTCGATAAAATTATCCTTTTTTCGTTTTTTAGCTCTAAAATCCACGAATCCTGCCGCAGGACGAAAGGACATGGTTCGCTCG
*************************************************************************************........(((...((.((..((((((..((.((......(((.............)))......)).))..))).)))..)).)).)))**************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 M020
head
 V119
head
 V118
embryo
 V117
male body
.....................................................................................GAATGCAGATCGATAGTTCTG................................................................................................................................................. 21 0 2 1.50 3 0 1 2 0 0
................................................................................................................................................................................................................ATCCACGAATCCTGCCGCAGG...................... 21 0 3 1.00 3 2 0 1 0 0
..TTTGGAGACTTTTTGGCTATT.................................................................................................................................................................................................................................... 21 0 2 1.00 2 1 0 0 0 1
................................................................................................GATAGTTCTGATCCTGGAGGT...................................................................................................................................... 21 0 2 1.00 2 2 0 0 0 0
..........................................................................................................................................................CTACAGAGATATGGCCTCGAT............................................................................ 21 0 2 1.00 2 0 0 0 2 0
...................TATTTTTCTGACTCTACCCCT................................................................................................................................................................................................................... 21 0 2 1.00 2 0 2 0 0 0
..................................................................................CTTGAATGCAGATCGATAGTT.................................................................................................................................................... 21 0 5 0.80 4 0 0 3 1 0
...............................................................................................................................TGTGTCCTGTCGAAATCGGTC....................................................................................................... 21 0 3 0.67 2 2 0 0 0 0
................................................................................................................................GTGTCCTGTCGAGATCGGTCA...................................................................................................... 21 1 3 0.67 2 0 1 1 0 0
..................................................................................................................................................................................................................CCACGAATCCTGCCGCAGGAC.................... 21 0 3 0.67 2 2 0 0 0 0
...............................................................................................CGATGGTTCTGATCCTGGAGG....................................................................................................................................... 21 1 3 0.67 2 2 0 0 0 0
................................................................................................................................GTGTCCTGTCGAAATCGGTCA...................................................................................................... 21 0 3 0.67 2 2 0 0 0 0
..............................................................TTGACAGGATATTGAAAATCC........................................................................................................................................................................ 21 0 2 0.50 1 0 0 0 1 0
.TTTTGGAGACTTTTTGGCTAT..................................................................................................................................................................................................................................... 21 0 2 0.50 1 0 0 0 0 1
............TTTTGGCTATTTTTCTGACTCT......................................................................................................................................................................................................................... 22 0 2 0.50 1 0 1 0 0 0
...........................................................TTTTTGACAGGATATTGAAAA........................................................................................................................................................................... 21 0 2 0.50 1 0 0 0 1 0
........................................................ATGTTTTTGACGGGATATTGA.............................................................................................................................................................................. 21 1 2 0.50 1 1 0 0 0 0
.................................................TCGAGTGATGTTTTTGACAGG..................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0
............................................................................................GATCGATAGTTCTGATCCTGG.......................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0
....................................................AGTGATGTTTTTGACAGGATA.................................................................................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0
................................................................................................GATGGTTCTGATCCTGGAGGT...................................................................................................................................... 21 1 2 0.50 1 0 0 0 0 1
.....................................CCTTACAAAAATTCGAGTGATG................................................................................................................................................................................................ 22 0 2 0.50 1 0 1 0 0 0
........................................................................................TGCAGATCGATAGTTCTGATCC............................................................................................................................................. 22 0 2 0.50 1 1 0 0 0 0
.......................................TTACAAAAATTCGAGTGATGT............................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0
.............................................................................................ATCGATAGTTCTGATCCTGGA......................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0
..................CTATTTTTCTGACTCTACCC..................................................................................................................................................................................................................... 20 0 2 0.50 1 0 1 0 0 0
......................................................................................................................................................................................................................................CGAAAGGACATGGTTCGCTCG 21 0 2 0.50 1 1 0 0 0 0
................................................TTCGAGTGATGTTTTTGACAG...................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0
..............................................................TTGACAGGATGTTGAAAATC......................................................................................................................................................................... 20 1 2 0.50 1 1 0 0 0 0
................................................................................................GATGGTTCTGATCCTGGGGGT...................................................................................................................................... 21 2 2 0.50 1 0 0 0 0 1
.........................TCTGACTCTACCCCTTACAAA............................................................................................................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0
...........................................................................................AGATCGATAGTTCTGATCCTG........................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................GTCCTACAGAGATATGGCCT................................................................................ 20 0 3 0.33 1 1 0 0 0 0
................................................................................................................................GTGTCCTGTCGAAATCGGTCC...................................................................................................... 21 1 3 0.33 1 0 0 1 0 0
.............................................................................................................................................ATCGGTCAATGTCCTACAGAG......................................................................................... 21 0 3 0.33 1 1 0 0 0 0
.....................................................................................................................................................ATGTCCTACAGAGATATGGCCT................................................................................ 22 0 3 0.33 1 1 0 0 0 0
...............................................................................................................................................CGGTCAATGTCCTACAGAGAT....................................................................................... 21 0 3 0.33 1 1 0 0 0 0
..........................................................................................................................................GAAATCGGTCAATGTCCTACA............................................................................................ 21 0 3 0.33 1 1 0 0 0 0
.................................................................................................................................................................................................................TCCACGAATCCTGCCGCGGGA..................... 21 1 3 0.33 1 1 0 0 0 0
..........................................................................................................................................................CTACAGAGATATGGCCTCG.............................................................................. 19 0 3 0.33 1 0 0 1 0 0
........................................................................................................................................................TCCTACAGAGATATGGCCTCG.............................................................................. 21 0 3 0.33 1 0 0 1 0 0
...............................................................................................CGATAGTTCTGATCCTGGAGG....................................................................................................................................... 21 0 3 0.33 1 0 1 0 0 0
..........................................................................................CAGATCGATGGTTCTGATCCT............................................................................................................................................ 21 1 3 0.33 1 1 0 0 0 0
...............................................................................................................................................................................................................AATCCACGAATCCTGCCGCAG....................... 21 0 3 0.33 1 1 0 0 0 0
.............................................................................................................................................................................................................AAAATCCACGAATCCTGCCGC......................... 21 0 3 0.33 1 1 0 0 0 0
........................................................................................................................................................TCCTACAGAGATGTGGCCTCG.............................................................................. 21 1 3 0.33 1 1 0 0 0 0
................................................................................................................................GTGTCCTGTCGAAATCGGTC....................................................................................................... 20 0 3 0.33 1 0 0 0 0 1
...........................................................................................AGATCGATGGTTCTGGTCCTG........................................................................................................................................... 21 2 3 0.33 1 0 0 0 0 1
...........................................................................................................................................................................................................CTGAAATCCACGAATCCTGCC........................... 21 1 3 0.33 1 1 0 0 0 0
..............................................................................................TCGATAGTTCTGATCCTGGAGT....................................................................................................................................... 22 1 3 0.33 1 0 0 1 0 0
...............................................................................................CGATAGTTCTGAACCTGGAGG....................................................................................................................................... 21 1 3 0.33 1 0 1 0 0 0
..........................................................................................................................................................CTACAGAGATGTGGCCTCG.............................................................................. 19 1 3 0.33 1 1 0 0 0 0
............................................................................................................................................................................................................TAAAATCCACGAATCCTGCC........................... 20 0 3 0.33 1 1 0 0 0 0
.................................................................................................................................................................................................TTTTTTAGCTCTAAAATCCAC..................................... 21 0 7 0.29 2 2 0 0 0 0
......................................................................................................................................................................................................................GAATCCTGCCGCGGGACGAAG................ 21 2 4 0.25 1 1 0 0 0 0
...................................................................................................................................................................................................TTTTGGCTCTAAAATCCACGA................................... 21 1 4 0.25 1 1 0 0 0 0
...............................................................................................CGATGATTCTGATCCTGGAGG....................................................................................................................................... 21 2 4 0.25 1 0 0 0 0 1
...................................................................................................................................................................................................TTTTAGCTCTAAAATCCACG.................................... 20 0 4 0.25 1 0 0 0 1 0
......................TTTTCTGACTCTACCCCTTA................................................................................................................................................................................................................. 20 0 4 0.25 1 1 0 0 0 0
...................................................................................TTGAATGCAGATCGATAGTTC................................................................................................................................................... 21 0 4 0.25 1 1 0 0 0 0
...................................................................................................................................................................................................TTTTAGCTCTAAAATCCACGA................................... 21 0 4 0.25 1 0 0 0 1 0
...................................................................................................................................................................................................................CACGAATCCTGCCGCAGGAC.................... 20 0 4 0.25 1 1 0 0 0 0
..........................................................................TGAAAATCCTTGAATGCAGAT............................................................................................................................................................ 21 0 9 0.22 2 1 0 0 1 0
.............................................................................................................................GGTGTGTCCTGTCGAAATCG.......................................................................................................... 20 0 5 0.20 1 1 0 0 0 0
.......................................................................................................................AAAAGAGGTGTGTCCTGTCGA............................................................................................................... 21 1 5 0.20 1 0 0 0 1 0
.................................................................................................................................................................................................................................CAGGACGAAGGGACATGGTTC..... 21 1 5 0.20 1 0 1 0 0 0
.............................................................................................................................................................................................TTCGTTTTTTAGCTCTAAAATCC....................................... 23 0 5 0.20 1 1 0 0 0 0
..............................................................................................................................GTGTGTCCTGTCGAAATCGGT........................................................................................................ 21 0 5 0.20 1 0 0 1 0 0
........................................................................................................................................................................................................................GTCCTGCCGCAGGACGAAAGG.............. 21 1 5 0.20 1 1 0 0 0 0
.................................................................................................................................................................................................................................CGGGACGAGAGGACATGGTTC..... 21 2 5 0.20 1 0 1 0 0 0
..................CTATTTTTCTGACTCTGCC...................................................................................................................................................................................................................... 19 1 5 0.20 1 0 1 0 0 0
.............................................................................................................................GGTGTGTCCTGTCGAAATCGG......................................................................................................... 21 0 5 0.20 1 1 0 0 0 0
.................................................................................................................................TGTCCTGTCGAAATCGGTCAG..................................................................................................... 21 1 5 0.20 1 1 0 0 0 0
.....................TTTTTCTGACTCTGCCCCTTA................................................................................................................................................................................................................. 21 1 6 0.17 1 1 0 0 0 0
............................................................................................................................................................................................................................TGCCGCAGGACGAAAGGACATG......... 22 0 7 0.14 1 0 1 0 0 0
...............................................................................................................................................................................................................................CGCAGGACGGAAGTACATGG........ 20 2 8 0.13 1 1 0 0 0 0
......................................................................................................................GGAAAAGGGTGTGTCCTGTCG................................................................................................................ 21 3 8 0.13 1 1 0 0 0 0
..................................................................................................TACAGCTGATCCTGGAGGTC..................................................................................................................................... 20 3 8 0.13 1 0 0 0 1 0
...............................................................................................................................................................................................................................CGCAGGACGGAAGTACATG......... 19 2 8 0.13 1 1 0 0 0 0
..............................................................................................................TGGAGGTCGGAAAAGGGTGTG........................................................................................................................ 21 3 9 0.11 1 0 0 1 0 0
...................................................................................................AGGTATGATCCTGGAGGGC..................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 1
...............................................................................................................................................................................................................AATCCACGAATCCTGCCCAG........................ 20 3 11 0.09 1 1 0 0 0 0
........................................................................ATTGAAAGTCCTTGAATGCAG.............................................................................................................................................................. 21 1 13 0.08 1 1 0 0 0 0
....................................................ATTGATGTTTTTGACGGG..................................................................................................................................................................................... 18 2 13 0.08 1 1 0 0 0 0
..................................................................................................................................................................................ATTATCCTTTTTTCGTTTTTT.................................................... 21 0 19 0.05 1 1 0 0 0 0
.........................................................................................................................................................................................TTTTTTCGTTTTTTAGCTCTA............................................. 21 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................AATTATCCTTTTTTCGTTTTT..................................................... 21 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

AAAAACCTCTGAAAAACCGATAAAAAGACTGAGATGGGGAATGTTTTTAAGCTCACTACAAAAACTGTCCTATAACTTTTAGGAACTTACGTCTAGCTATCAAGACTAGGACCTCCAGTTTTTTTCCACACAGGACAGCTTTAGCCAGTTACAGGATGTCTCTATACCGGAGCTATTTTAATAGGAAAAAAGCAAAAAATCGAGATTTTAGGTGCTTAGGACGGCGTCCTGCTTTCCTGTACCAAGCGAGC
****************************************************************************........(((...((.((..((((((..((.((......(((.............)))......)).))..))).)))..)).)).)))************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 M020
head
 V118
embryo
 V119
head
 V117
male body
.................................................................................................................................ACAGGACAGCTTTAGCCAGTT..................................................................................................... 21 0 3 1.00 3 2 0 1 0 0
.......................................................................................................................................................CAGGATGTCTCTATACCGGAG............................................................................... 21 0 3 1.00 3 0 2 1 0 0
......................................................................................................................................................ACAGGATGTCTCTATACCGGA................................................................................ 21 0 3 1.00 3 0 3 0 0 0
............................CTGAGATGGGGAATGTTTTTA.......................................................................................................................................................................................................... 21 0 2 1.00 2 0 0 1 0 1
............................................................................................................GGACCTCCAGTTTTTTTCCAC.......................................................................................................................... 21 0 2 1.00 2 2 0 0 0 0
................................................................................................................................CACAGGACAGCTTTAGCCAGT...................................................................................................... 21 0 3 0.67 2 1 0 1 0 0
.............................................................................................................................................................................................................................CGGCGTCCTGCTTTCCTGTAC......... 21 0 8 0.63 5 1 4 0 0 0
.........................................................................................................................................................GGATGTCTCTATACCGGAGCTA............................................................................ 22 0 2 0.50 1 1 0 0 0 0
......................................................................................................................................................................CCGGAGCTATTTTAATAGGAA................................................................ 21 0 2 0.50 1 0 0 1 0 0
...........................................................................................TCTAGCTATCGAGGCTAGGA............................................................................................................................................ 20 2 2 0.50 1 1 0 0 0 0
...................................................................................................................................................................ATACCGGAGCTATTTTAATA.................................................................... 20 0 2 0.50 1 0 0 1 0 0
.......................................AATGTTTTTAAGCTCACTACAA.............................................................................................................................................................................................. 22 0 2 0.50 1 0 0 1 0 0
.......................................................................................................GACTAGGACCTCCAGTTTTTTT.............................................................................................................................. 22 0 2 0.50 1 1 0 0 0 0
............................................................................................................................................................TGTCTCTATACCGGAGCTATT.......................................................................... 21 0 2 0.50 1 1 0 0 0 0
................CCGATAAAAAGACTGAGATG....................................................................................................................................................................................................................... 20 0 2 0.50 1 0 0 1 0 0
....................................................TCACTACAGGGACTGTCCTAT.................................................................................................................................................................................. 21 3 2 0.50 1 1 0 0 0 0
..................................................................................................................................................................................................................................TCCTGCTTTCCTGTACCGAGC.... 21 1 2 0.50 1 1 0 0 0 0
.........................................................................................................CTAGGACCTCCAGTTTTTTTC............................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0
............................CTGAGATGGGGAATGTTTTT........................................................................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0 0
.........................................................ACAAAAACTGTCCTATAACTT............................................................................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0
....................................................TCACTACGAGGACTGTCCTAT.................................................................................................................................................................................. 21 3 2 0.50 1 1 0 0 0 0
..........................GACTGAGATGGGGAATGTTTT............................................................................................................................................................................................................ 21 0 2 0.50 1 1 0 0 0 0
................................GATGGGGAATGTTTTTAAGCT...................................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0
...............................................................................TAGGAACTTACGTCTAGCTAT....................................................................................................................................................... 21 0 20 0.40 8 3 2 3 0 0
.............................................................................................................................................................................................................................CGGCGTCCTGCTTTCCTGT........... 19 0 8 0.38 3 0 3 0 0 0
.........................................................................................................................................GCTTTAGCCAGTTACAGGATG............................................................................................. 21 0 3 0.33 1 1 0 0 0 0
...................................................................................................................................AGGGCAGCTTTAGCCAGTTGC................................................................................................... 21 2 3 0.33 1 1 0 0 0 0
.......................................................................................................................................................................................................TCGAGTTTTTAGGAGCTT.................................. 18 2 9 0.33 3 0 3 0 0 0
....................................................................................................................................TGACAGCTTTAGCCAGTTACAG................................................................................................. 22 1 3 0.33 1 0 0 0 1 0
...............................................................................................................................ACACAGGACAGCTTTAGCCAG....................................................................................................... 21 0 3 0.33 1 0 0 0 1 0
............................................................................................................................................TTAGCCAGTTACAGGGTGTCT.......................................................................................... 21 1 3 0.33 1 1 0 0 0 0
..........................................................................................................................................................................................................................GGACGGCGTCCTGCTTTCCTG............ 21 0 6 0.33 2 2 0 0 0 0
......................................................................................................................................................................................................ATCGATATTTTAGGTGCTTAG................................ 21 1 3 0.33 1 1 0 0 0 0
........................................................................................................................................................................................................CGAGGTTTTAGGTGCTTAG................................ 19 1 3 0.33 1 0 0 0 1 0
.........................................................................................................................................GCTTTAGCCAGTTACAGGGT.............................................................................................. 20 1 3 0.33 1 1 0 0 0 0
....................................................................................................................................GGACAGCTTTAGCCAGTTACA.................................................................................................. 21 0 3 0.33 1 0 1 0 0 0
.............................................................................................................................................................GTCTCTATACCGGAGCTGTTT......................................................................... 21 1 3 0.33 1 1 0 0 0 0
....................................................................................................................................................................................................................................CTGTTTTCCTGTACCAAGC.... 19 1 3 0.33 1 1 0 0 0 0
.............................................................................................................................................TAGCCAGTTACAGGATGTCT.......................................................................................... 20 0 3 0.33 1 1 0 0 0 0
.......................................................................................................................................................................................................TCGAGATTTTAGGTGCTTAG................................ 20 0 3 0.33 1 1 0 0 0 0
......................................................................................................................................................TCAGGATGTCTCTATACCGGAG............................................................................... 22 1 3 0.33 1 0 1 0 0 0
............................................................................................................................................TTAGCCAGTTACAGGATGTCT.......................................................................................... 21 0 3 0.33 1 0 0 0 1 0
......................................................................................................................................................................................................ATCGAGATTTTAGGTGCTTAG................................ 21 0 3 0.33 1 0 1 0 0 0
......................................................................................................................................................................................................ATCGAGATTTTAGGTGCTTA................................. 20 0 3 0.33 1 1 0 0 0 0
..................................................................................................................................................................................................................GGTGCTTAGGACGGCGTCCTG.................... 21 0 3 0.33 1 1 0 0 0 0
.................................................................................................................................ACAGGGCAGCTTTAGCCAGTT..................................................................................................... 21 1 3 0.33 1 0 1 0 0 0
...................................AGGGAATGTTTTTAAGCTCACT.................................................................................................................................................................................................. 22 1 4 0.25 1 1 0 0 0 0
........................AAGACTGAGATGGGGAATGT............................................................................................................................................................................................................... 20 0 4 0.25 1 1 0 0 0 0
....................TAAAAAGACTGAGATGGGGAA.................................................................................................................................................................................................................. 21 0 4 0.25 1 0 0 0 0 1
................................................................................................................................................TCAGTTGCAGGGTGTCTCTATA..................................................................................... 22 3 4 0.25 1 1 0 0 0 0
.............................................................................................................................CCACACAGGACAGCTTTAGCC......................................................................................................... 21 0 5 0.20 1 1 0 0 0 0
.....CCTCTGAAGAACCGGTGAAAA................................................................................................................................................................................................................................. 21 3 6 0.17 1 0 0 0 1 0
........................................................................................................................................................................................................CGAGTTTTTAGGAGCTTA................................. 18 2 6 0.17 1 0 0 1 0 0
..............................................................................................................................................................................................................................GGCGTCCTGCTTTCCTGTACC........ 21 0 8 0.13 1 0 0 1 0 0
.............................................................................................................................................................................................................................CAGCGTCCTGCTTTCCTGTAC......... 21 1 8 0.13 1 0 1 0 0 0
.............................................................................................................................................................................................................................CGGCGTCCCGCTTTCCTGTAC......... 21 1 8 0.13 1 0 1 0 0 0
...................................................................................................................................................................................................ATAATCGAGATCTTAGGTGCC................................... 21 3 8 0.13 1 0 1 0 0 0
......................................................................................................................................................................................................ATCGAGATCTTAGGTGCC................................... 18 2 8 0.13 1 0 1 0 0 0
..............................................................................TTAGGAACTTACGTCTAGCTA........................................................................................................................................................ 21 0 20 0.10 2 1 1 0 0 0
.....................AAAAAGAGTGAGATGGGTA................................................................................................................................................................................................................... 19 2 16 0.06 1 1 0 0 0 0
...................................................................................................................................................................................AATAGGAAAAAAGCAAAAAAT................................................... 21 0 18 0.06 1 1 0 0 0 0
...............................................................................TAGGGACTTACGTCTAGCTGT....................................................................................................................................................... 21 2 20 0.05 1 0 1 0 0 0
...............................................................................TAGGAACTTACGTCTAGCTA........................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................GGAAAAAAGCAAAAAATCGAG............................................... 21 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................ATAGGAAAAAAGCAAAAAATC.................................................. 21 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................TAGGAAAAAAGCAAAAAATCG................................................. 21 0 20 0.05 1 0 1 0 0 0
....................GAAAAAGAGTGAGATGGG..................................................................................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0
....................................GGGAATGTTTTTAAGCTCGCT.................................................................................................................................................................................................. 21 1 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................TTTTAATAGGAAAAAAGCAA........................................................ 20 0 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004768:2626725-2626975 - dwi_2138 TTTTTGGAGACTTTTTGGCTATTTTTCTGACTCTACCCCTTACAAAAAT-TCGAGTGATGTTTTTGACAGGATATTGAAAATCCTTGAATGCAGATCGATAGTTCTGA-TCCTGGAGGTCAAAAAAAGGTGTGTCCTGTCGAAATCGGTCAATGTCCTACAG-----AGATATGGCCTCGATAAAATTATCCTTTTTTCGTTTTTTAGCTCTAAAATCCACGAATCCTGCCGCAGGACGAAAGGACATGGTTCGCT-CG----
droVir3 scaffold_13049:11697988-11698234 + TTTTTCGA--TT-TTT-GCCACTTTTGCGACTATACCCCTTGAAAAAGTTTTAGGTGAAAATTTTGGTCGAATCCTGGAAATCTTTGAATGCCAATCGATGGTCCTGAGTCCT-GCGAGTCCAATAAGGTGTGTCCTTGCCAGATCCTTAAGGATTTGGCCA-----AGATATGGCCAAAAAATAAATGTCCTTT-TTAGAAAAATAGCTATAACTCGGCCATATCCTTGCAGATTTTCAAAGGACACTGTGCGTT-AG----
droMoj3 scaffold_6496:699353-699605 + TTTTCTGA--TTTTTT-GCCAATTTTTCGACCATATCCCTTGCAATTTT-TGATGGAAAATTTTTTGTGGAATCCTGGAAATCCTTGAATGCAAATCGATAGTATAAG-TGCTCACGAGCTCAAAAAGGTATGTCATGCGGGGATCCTTAAGGATATGTCGG-----AGTTATGGCTGTGTAAAGAAAGTCCTTGTTTTGAAATTTAGTTCTATCTCGGCCAAATTTGAACGGATTTTCGCAGGAAATGGCGCGTTTAGATTC
droGri2 scaffold_15110:15528702-15528886 + TTTTCAGA--CTTCTT-ACCATTATTTGTAATCCAACCCATGTAAAAAT-A--CTGTATATTTTTATCCAAATTTTAAAAACCCTTACATGCAAATCGATAGGACTGT-TTTTCACAAGCCAAAATATGTAGGTCCTTTCGAGATCCATCAGCAC--GGCCATAGTGCTACATGGCTACACAA-AAATGCCCTTT--------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TTTTTGGAGACTTTTTGGCTATTTTTCTGACTCTACCCCTTACAAAAAT-TCGAGTGATGTTTTTGACAGGATATTGAAAATCCTTGAATGCAGATCGATAGTTCTGA-TCCTGGAGGTCAAAAAAAGGTGTGTCCTGTCGAAATCGGTCAATGTCCTACAG-----AGATATGGCCTCGATAAAATTATCCTTTTTTCGTTTTTTAGCTCTAAAATCCACGAATCCTGCCGCAGGACGAAAGGACATGGTTCGCT-CG----SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................GAATGCAGATCGATAGTTCTG............................................................................................................................................................2121.50310002
.......................................................................................................................................................................................................................ATCCACGAATCCTGCCGCAGG...........................2131.00302001
..TTTGGAGACTTTTTGGCTATT................................................................................................................................................................................................................................................2121.00201100
.................................................................................................GATAGTTCTGA-TCCTGGAGGT................................................................................................................................................2121.00202000
............................................................................................................................................................CTACAG-----AGATATGGCCTCGAT.................................................................................2121.00200020
...................TATTTTTCTGACTCTACCCCT...............................................................................................................................................................................................................................2121.00220000
...................................................................................CTTGAATGCAGATCGATAGTT...............................................................................................................................................................2150.80400013
.................................................................................................................................TGTGTCCTGTCGAAATCGGTC.................................................................................................................2130.67202000
.........................................................................................................................................................................................................................CCACGAATCCTGCCGCAGGAC.........................2130.67202000
..................................................................................................................................GTGTCCTGTCGAAATCGGTCA................................................................................................................2130.67202000
...............................................................TTGACAGGATATTGAAAATCC...................................................................................................................................................................................2120.50100010
.TTTTGGAGACTTTTTGGCTAT.................................................................................................................................................................................................................................................2120.50100100
............TTTTGGCTATTTTTCTGACTCT.....................................................................................................................................................................................................................................2220.50110000
............................................................TTTTTGACAGGATATTGAAAA......................................................................................................................................................................................2120.50100010
..................................................TCGAGTGATGTTTTTGACAGG................................................................................................................................................................................................2120.50101000
.............................................................................................GATCGATAGTTCTGA-TCCTGG....................................................................................................................................................2120.50101000
.....................................................AGTGATGTTTTTGACAGGATA.............................................................................................................................................................................................2120.50101000
.....................................CCTTACAAAAAT-TCGAGTGATG...........................................................................................................................................................................................................2220.50110000
.........................................................................................TGCAGATCGATAGTTCTGA-TCC.......................................................................................................................................................2220.50101000
.......................................TTACAAAAAT-TCGAGTGATGT..........................................................................................................................................................................................................2120.50101000
..............................................................................................ATCGATAGTTCTGA-TCCTGGA...................................................................................................................................................2120.50101000
..................CTATTTTTCTGACTCTACCC.................................................................................................................................................................................................................................2020.50110000
.............................................................................................................................................................................................................................................CGAAAGGACATGGTTCGCT-CG----2120.50101000
................................................T-TCGAGTGATGTTTTTGACAG.................................................................................................................................................................................................2120.50101000
.........................TCTGACTCTACCCCTTACAAA.........................................................................................................................................................................................................................2120.50101000
............................................................................................AGATCGATAGTTCTGA-TCCTG.....................................................................................................................................................2120.50101000
.........................................................................................................................................................GTCCTACAG-----AGATATGGCCT.....................................................................................2030.33101000
..................................................................................................................................GTGTCCTGTCGAAATCGGTCC................................................................................................................2130.33100001
...............................................................................................................................................ATCGGTCAATGTCCTACAG-----AG..............................................................................................2130.33101000
.......................................................................................................................................................ATGTCCTACAG-----AGATATGGCCT.....................................................................................2230.33101000
.................................................................................................................................................CGGTCAATGTCCTACAG-----AGAT............................................................................................2130.33101000
............................................................................................................................................GAAATCGGTCAATGTCCTACA......................................................................................................2130.33101000
............................................................................................................................................................CTACAG-----AGATATGGCCTCG...................................................................................1930.33100001
..........................................................................................................................................................TCCTACAG-----AGATATGGCCTCG...................................................................................2130.33100001
................................................................................................CGATAGTTCTGA-TCCTGGAGG.................................................................................................................................................2130.33110000
......................................................................................................................................................................................................................AATCCACGAATCCTGCCGCAG............................2130.33101000
....................................................................................................................................................................................................................AAAATCCACGAATCCTGCCGC..............................2130.33101000
..................................................................................................................................GTGTCCTGTCGAAATCGGTC.................................................................................................................2030.33100100
...............................................................................................TCGATAGTTCTGA-TCCTGGAGT.................................................................................................................................................2230.33100001
...................................................................................................................................................................................................................TAAAATCCACGAATCCTGCC................................2030.33101000
........................................................................................................................................................................................................TTTTTTAGCTCTAAAATCCAC..........................................2170.29202000
..........................................................................................................................................................................................................TTTTAGCTCTAAAATCCACG.........................................2040.25100010
......................TTTTCTGACTCTACCCCTTA.............................................................................................................................................................................................................................2040.25101000
....................................................................................TTGAATGCAGATCGATAGTTC..............................................................................................................................................................2140.25101000
..........................................................................................................................................................................................................TTTTAGCTCTAAAATCCACGA........................................2140.25100010
..........................................................................................................................................................................................................................CACGAATCCTGCCGCAGGAC.........................2040.25101000
...........................................................................TGAAAATCCTTGAATGCAGAT.......................................................................................................................................................................2190.22201010
...............................................................................................................................GGTGTGTCCTGTCGAAATCG....................................................................................................................2050.20101000
....................................................................................................................................................................................................TTCGTTTTTTAGCTCTAAAATCC............................................2350.20101000
................................................................................................................................GTGTGTCCTGTCGAAATCGGT..................................................................................................................2150.20100001
...............................................................................................................................GGTGTGTCCTGTCGAAATCGG...................................................................................................................2150.20101000
...................................................................................................................................TGTCCTGTCGAAATCGGTCAG...............................................................................................................2150.20101000
...................................................................................................................................................................................................................................TGCCGCAGGACGAAAGGACATG..............2270.14110000
......................................................................................................................................................................................................................AATCCACGAATCCTGCCCAG.............................20110.09101000
.........................................................................................................................................................................................ATTATCCTTTTTTCGTTTTTT.........................................................21190.05101000
................................................................................................................................................................................................TTTTTTCGTTTTTTAGCTCTA..................................................21200.05101000
........................................................................................................................................................................................AATTATCCTTTTTTCGTTTTT..........................................................21200.05101000
droVir3
TTTTTCGA--TT-TTT-GCCACTTTTGCGACTATACCCCTTGAAAAAGTTTTAGGTGAAAATTTTGGTCGAATCCTGGAAATCTTTGAATGCCAATCGATGGTCCTGAGTCCT-GCGAGTCCAATAAGGTGTGTCCTTGCCAGATCCTTAAGGATTTGGCCA-----AGATATGGCCAAAAAATAAATGTCCTTT-TTAGAAAAATAGCTATAACTCGGCCATATCCTTGCAGATTTTCAAAGGACACTGTGCGTT-AG----SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................GAAAAATAGCTATAACTCGGC...........................................2140.251000000000000000000000000100000000000000000000000000000000000000
......................................................................................GAATGCCAATCGATGGTCCTGT...........................................................................................................................................................2250.201010000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................TAACTCGGCCATATCCTTGCAG..............................22200.102000000000000000000000000000001010000000000000000000000000000000
droMoj3
TTTTCTGA--TTTTTT-GCCAATTTTTCGACCATATCCCTTGCAATTTT-TGATGGAAAATTTTTTGTGGAATCCTGGAAATCCTTGAATGCAAATCGATAGTATAAG-TGCTCACGAGCTCAAAAAGGTATGTCATGCGGGGATCCTTAAGGATATGTCGG-----AGTTATGGCTGTGTAAAGAAAGTCCTTGTTTTGAAATTTAGTTCTATCTCGGCCAAATTTGAACGGATTTTCGCAGGAAATGGCGCGTTTAGATTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
TTTTCAGA--CTTCTT-ACCATTATTTGTAATCCAACCCATGTAAAAAT-A--CTGTATATTTTTATCCAAATTTTAAAAACCCTTACATGCAAATCGATAGGACTGT-TTTTCACAAGCCAAAATATGTAGGTCCTTTCGAGATCCATCAGCAC--GGCCATAGTGCTACATGGCTACACAA-AAATGCCCTTT--------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 03:28 AM