ID:

dwi_2107

 Coordinate:

scf2_1100000004768:1711524-1711786 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.4 -17.0 -17.0 -17.0

Flybase annnotation

exon [dwil_GLEANR_3135:2]; CDS [Dwil\GK20366-cds]; exon [dwil_GLEANR_3135:1]; CDS [Dwil\GK20366-cds]; intron [Dwil\GK20366-in]

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+
mature
star
  1. scf2_1100000004511:7777608-7777629 -
  2. scf2_1100000004515:2851211-2851232 -
  3. scf2_1100000004590:286436-286457 -
  4. dwi_2107  scf2_1100000004768:1711685-1711706 -
  5. scf2_1100000004768:1934439-1934460 +
  6. scf2_1100000004837:952128-952149 -
  7. scf2_1100000004902:12308997-12309018 -
  8. scf2_1100000004909:6853292-6853313 -
  9. scf2_1100000004909:7856871-7856892 -
  10. scf2_1100000004909:9718322-9718343 -
  11. scf2_1100000004909:10840447-10840468 -
  12. scf2_1100000004909:11253189-11253210 -
  13. scf2_1100000004511:2297015-2297036 +
  14. scf2_1100000004511:10729751-10729772 +
  15. scf2_1100000004515:1176773-1176794 +
  16. scf2_1100000004558:542197-542218 +
  17. scf2_1100000004909:6131002-6131023 +
  18. scf2_1100000004963:4449229-4449250 +

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#########################################---------
GATTATGCTATGTCACAGTCACAGCGACGGTGAATTTCCCATGTATCGAGGTAAGTCATTCAGTGAGTAAGTGAGTGAGTGGATGTGTAGCTGACATACTGAGCGAGTGCGCGTGAGTGTGTGTGTGTGTGTGGGTGTGGGTGTGGGTGTGGGTGTAGGTGTACGGCTTAACCGCAGGACATTTTGATAGCTTAATTAGCTGGGACATGTTGCGGCAGGCGGTTTAGGGATGCGACAGGCGGCGGGCTGGTCTAATGCAACAGTTGATGGAAATGTGGTAAACATAACCATAACTCATTTGATATCTGTACAGATTTGTGTCTGCTGGGTTTTTGCTCGACACAATTTGATTAACAATTGTAT
*********************************************************.((((.................((.((.....(((.((((((...(((...((((....)))).)))..)))))).)))....)).))..)).))******************************************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V117
male body		 M045
female body
 M020
head
 V118
embryo
 V119
head
.........................................................ATTCAGTGAGTAAGTGAGTGAGTGGAT....................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
....................................................................................................GAGCGAGTGCGCGTGCGTGA................................................................................................................................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0
..........................................................................................................................................................................................................GGAGATGTTTCGGCAGGC............................................................................................................................................... 18 2 3 0.33 1 0 0 1 0 0
..............................................................................................................................................................................................................................GTTACGGATTCGACAGGC........................................................................................................................... 18 3 20 0.30 6 1 3 2 0 0
.........................................................................................................................................................TGTTGGTGGACAGCTTAACC.............................................................................................................................................................................................. 20 3 8 0.13 1 0 1 0 0 0
..................................................................................................................................GTGGGTGTGGGTGTGGGTGTGG................................................................................................................................................................................................................... 22 0 20 0.10 2 0 2 0 0 0
.................................................................................................................................TGTGGGTGTGGGTGTGGGTGTGG................................................................................................................................................................................................................... 23 0 20 0.10 2 0 2 0 0 0
...........................................................................................................................................................................................................GACAAGCTGGGGCAGGCGGT............................................................................................................................................ 20 3 10 0.10 1 0 1 0 0 0
.............................................................................................................................................................................................................CATGTAGCGGCTGCCGGTTT.......................................................................................................................................... 20 3 10 0.10 1 0 1 0 0 0
............................................................................................................................GTGTGTGTGGGTGTGGGTGTGGGTG...................................................................................................................................................................................................................... 25 0 10 0.10 1 0 0 0 0 1
.....................................................................................................................................................................................................................................................................AGTTGATTGAAAAGTGGTA................................................................................... 19 2 11 0.09 1 0 0 0 1 0
.....................................................................................................................................................................................................................................................................AGTTGATTGGAATGTGGT.................................................................................... 18 2 11 0.09 1 0 0 0 1 0
.......................................................................................................................................TGTGGGTGTGGGTGTGGGTGAA.............................................................................................................................................................................................................. 22 1 12 0.08 1 0 1 0 0 0
.........................................................................................................................................................................................................................................GGCAGGCGGCGTGCAGGTC............................................................................................................... 19 3 13 0.08 1 0 1 0 0 0
.............................................................................................................................................................................................................................................................AATGCACCAGTTGATGAA............................................................................................ 18 2 17 0.06 1 0 0 0 1 0
...............................................................................................................................TGTGTGGGTGTGGGTGTGGGTGAAG................................................................................................................................................................................................................... 25 2 20 0.05 1 0 1 0 0 0
..............................................................................................................................................................................................................ATGTTGCGGCACGCGGCAT.......................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0
.....................................................................................................................................GGTGTGGGTGTGGGTGTGG................................................................................................................................................................................................................... 19 0 20 0.05 1 0 1 0 0 0
.........................................................................................................................................................................................................................................................................GATGGGTTTGTGGTAAACA............................................................................... 19 3 20 0.05 1 0 1 0 0 0
...............................................................................................................................................................................................................................................AGGCGGGCTGGTATAATA.......................................................................................................... 18 3 20 0.05 1 0 1 0 0 0
.....................................................................................................................................GGTGTGGGTGTGGGTGTGGG.................................................................................................................................................................................................................. 20 0 20 0.05 1 1 0 0 0 0
......................................................................................................................GTGTGTGTGTGTGTGGGTGTG................................................................................................................................................................................................................................ 21 0 20 0.05 1 0 0 0 1 0
.................................................................................................................................TGTGGGTGTGGGTGTGGGTGTG.................................................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................TGTGTGGGTGTGGGTGTGGGTGAAG............................................................................................................................................................................................................. 25 2 20 0.05 1 0 1 0 0 0
..................................................................................................................................GTGGGTGTGGGTGTGGGTGTGGGTG................................................................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................GGTGTGGGTGTGGGTGTGGGTG................................................................................................................................................................................................................ 22 0 20 0.05 1 1 0 0 0 0
....................................................................................................................GTGTGTGTGTGTGTGTGGGTGTG................................................................................................................................................................................................................................ 23 0 20 0.05 1 0 0 0 0 1
....................................................................................................................................GGGTGTGGGTGTGGGTGTGG................................................................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0
...................................................................................................................................................TGTGGGTGGTGGTGTACGGCC................................................................................................................................................................................................... 21 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

CTAATACGATACAGTGTCAGTGTCGCTGCCACTTAAAGGGTACATAGCTCCATTCAGTAAGTCACTCATTCACTCACTCACCTACACATCGACTGTATGACTCGCTCACGCGCACTCACACACACACACACACCCACACCCACACCCACACCCACATCCACATGCCGAATTGGCGTCCTGTAAAACTATCGAATTAATCGACCCTGTACAACGCCGTCCGCCAAATCCCTACGCTGTCCGCCGCCCGACCAGATTACGTTGTCAACTACCTTTACACCATTTGTATTGGTATTGAGTAAACTATAGACATGTCTAAACACAGACGACCCAAAAACGAGCTGTGTTAAACTAATTGTTAACATA
*******************************************************************************************************************************************************************************************************************.((((.................((.((.....(((.((((((...(((...((((....)))).)))..)))))).)))....)).))..)).))********************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body
.........................................................................................................................................................................................................CGCTGCACAATGCCGTCCG............................................................................................................................................... 19 3 7 0.86 6 5 1
..........................................................................................................................................................................................................................................GGTGCGCCTCCCGACCAG............................................................................................................... 18 3 3 0.33 1 1 0
...................GAGTCGCTGCCCCTTAAAC..................................................................................................................................................................................................................................................................................................................................... 19 3 12 0.17 2 2 0
...........................................................................................................................................................................GGCGCCCTGGAGAACTAT.............................................................................................................................................................................. 18 3 9 0.11 1 0 1
...........................................................................................................................................................................................................................................................................................................................AACACGGAAGGCCCAAAAACG........................... 21 3 9 0.11 1 1 0
............................................................................................................................................................................................................TGCACAATGCCGTCCGTC............................................................................................................................................. 18 3 20 0.10 2 2 0
........................................................................................................................................................................................................ACGCTGCACAATGCCGTCC................................................................................................................................................ 19 3 12 0.08 1 1 0
.................................................................................................................ACTCACACACACACACACA....................................................................................................................................................................................................................................... 19 0 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004768:1711474-1711836 - dwi_2107 GA-TTATGCTATGTCACAGTC-ACAGCGACGGTGAATTTCCCAT-----------GTATCGAGGTAAGT-----CATTCAGTGAGTAAGTGAGTGAGTGGATGTG-TAGCTGACATACTGAGCGAGTGCGCGTGAGTGT--------------------------------------------------GTGTGTGTG---------------------------------------TGTGGGTGTG-------------------------GGTGTGGGTG----------TGGGTGT--AGG-------TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACGGCTTAACCG---------------------CAGGACATTTTGATAGCTTAATTAGCTGGGAC-ATGTTGC--------------------------------GGCAGGCGGTTTAGGGATG--CGACAGGCGGCGGGCTGGTCTAATGC-------AACAGTTGATGGAAATGTGG--------------------TAA---------------------------ACATAACCATAACTCATTTGATATCTGTACAGATTTGTGTCTGCTGGGTTTTTGCTCGACACAATTTGATTAACAAT--TGTAT--------------
droVir3 scaffold_12875:619547-619756 + AG-CA--------------------------------------G-----------ATGTTTAT-----------------------------GTGC--------A------------CTCAGCGTGTGCAAGTGTGT--GTG------------TGTGTGT----------------------------------------------G-------------TGTGTGTGTGTGTGTGTGTGTGCATG-----------CGAATGGGCGCCTTTGTATG--------------TGT--GCATGTGCTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTAA--------------GCTGT--------------------------------TGCTGGCGGTCGTGGCATG--CAGCCACAGGCGGGC-----------TAGGGTTGTCAGCGCATCGAAACCTGCCAAAATAAATTTAAC---------------------AAAATTTAATATTTG-------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:6401750-6401943 + TG-TA-----------------------------------------------------CTGAAATATAT-----CTAGCGGTGTATGC----GTGT--------GT-----------------------------GT--GTGTGTGTGTGTGTGTGTGTGT-----------------------------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTG-------------------------TGTGTGTGTGTGTGTGTTTGTGT------------------AG----------------------------------------TGCATATAACAAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAATTCAAATGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTATGCAACATGGCCTGG----------CA-------------------------------------------------------TTCCGTGTGGACACACGAGAGTGCGGGGG-------------G--------------
droGri2 scaffold_15245:11044249-11044468 + TG-TA-TGA---------------------------------------------------------------------------GT------A-AC--------AT-----------------------------GT--GAATGCATGTGT-TGTGTCTGT-----------------------------------------------------------GTGTGTGTGTGTGTTTGAGTGTGTGTG--TGTGTGTGT-----------------------GTGTATGCA--TGAGTGT--GTGCTTGCCT--CAGGC-----------AGCTGCGCAATGGCGACGACAGACATCAGATGCAACATGGC-AAGGGTCAAGGGGAGGAGCGGAGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCGGGC-----------TGGGGCA-------------------G--------------------CAA---------------------------TCGTGATCATGCCTCATTTTGCAACTGTACA-------------------------------------------------------------------
dp5 XR_group6:3870657-3870879 - TG-AG--------------------------------------------------------------------------------------------TGTAAGTGT-----------------------------------------------------------------------------------------GTGTGTGTGTTTGCGTGTGTGAGGTGTGTCTGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAGAGTTCTTTTGTGACTGGACGGACTGGATTGGATGACTTTTGGCTGATTGGCTGTCTGGGCGGCAGGCTTGTGTTTTGTTTTGTTGGTGCTGCTGCAAAACAAAAACGAAGTGCAATTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCAACTCAAAATT-----------GTTTTAC-------------------------------------------------------TTTTGTGTGTTTGTTCGGTACGGTTCGTT-------------T--------------
droPer2 scaffold_9:2162051-2162273 - TG-AG--------------------------------------------------------------------------------------------TGTATGTGT-----------------------------------------------------------------------------------------GTGTGTGTGTTTGCGTGTGTGAGGTGTGTCTGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAGAGTTCTTTTGTGACTGGACGGACTGGATTGGATGACTTTTGGCTGATTGGCTGTCTGGGCGGCAGGCTTGTGTTTTGTTTTGTTGGTGCTGCTGCAAAACAAAAACGAAGTGCAATTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCAACTCAAAATT-----------GTTTTAC-------------------------------------------------------TTTTGTGTGTTTGTTCGGTACGGTTCGTT-------------T--------------
droAna3 scaffold_13340:7476890-7477096 + TC-AC------------CGACAGCAGCGACAGCCGCTTTCTTTT-----------TGGCCAAATTAACTTTAGCCAGCCTATGGATGGCTGTGTGC----------------------------------------------------------TGTGTGTGTGTGAGT--GCTGTCTTAA----------------------------------------------------------------------------------------------------------------------------------------------------GCGCGCTGAT------------------------------------------------------GTGAGTGTGTGTGTGTGT----------------------TGAAGTTTATTGTGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTCTCAAG------------------------------------------------------GC-----------TA-----------TGCTAAAAATTTGTCCAGAACATTT-------------------------------------------------------------------------------------------------GCACATTTTGATTTGTTATGTTGTGG--------------
droBip1 scf7180000396759:639173-639273 - TG-TG--------------------------------------------------------------------------------------------TGGCTTTT-TAGTACACAAATTATGCGCTTGTGTGGGTGTGT--------------------------------------------------TTGTGTGTT-----------------------------------TGTTAGT----ATGTGAG---------------------TGTGTG--------------TGGGTGT--GTG-------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGGCTCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCA-------------------------------------------------------------------------------------------------
droKik1 scf7180000302621:392382-392509 + CC-CA--------------------------------------T-----------TTATTTTTGTGTGT-----CCTTCTCTGTGTGTGTGTGTGT--------GT-----------------------------GT--GTGTGTGTGTGTGTGTGTGTGT-----------------------------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTG-------------------------TGTGTGTGTGTGTGTGTGTGTGTGTGT--GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTG-------------------------------------------------------------------------------------------------
droFic1 scf7180000454045:1014325-1014528 + TA-AT--------------------------------------------------------------------------------------------CAAATGTGT-----------------------------------------------------------------------------------------GCGAGTATGCGTGTGTGTGT---------------------------------------GTGT-----------------------------------------------------------------------------------------------------------------------------------------------------GTGTTGGACTAAGTGCATGCAAATGTTGACAATTAATTTATGAC----------------GATTACTCATGGCAGCTAAACTAACT------------------------------------------------------------------------------------------------------------------------------GTGACT--G--------------TTTATAGAAAAGAGTTGCTAATGGCAGGGGGCTCAAAGTTGGCCGGCCAGCGGGGGGTTAAAGGAAAGA-------AGAAGAAGAAAAA--------------------------------------------------AATA----------------------------------------------------------------------GGG-------------T--------------
droEle1 scf7180000491087:213123-213271 - GTGTG-TGT-----------------------------------------------------------------------------------GTGT--------GT-----------------------------GT--GTGTGTGTGTGTGTGTGTGTGT-----------------------------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTG-------------------------TGTGTGTGTGTGTGTGTGTGTGT--GAGTGTG-------AG-----------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------GTT---CG----TTCCCAGATACTTTTTAGCCGCAGG--------------------------------TGGT--------------------------------GGCTGAAAGTTAAGGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------
droRho1 scf7180000780197:47347-47492 + GT-GGATTT------------------------------TCCGTATTCGCTGTTTGTATTGTTGTTTGC-----CTTTCCATATGTGGTTGTGTGT--------G--------------------------------------------------GAGAAAGTGTGTGTTAGGTGGTGAAAGTGTATGTGT----GTGTGTGTGT-------------------------------------------------GTGT-----------------------------------------------------------------------------------------------------------------------------------------------------GTGTAAGAGTGTGTGTGTGTGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGGCATGTG-------------------------------------------------------------------------------------------------
droBia1 scf7180000301715:127838-127987 - TA-AT--------------------------------------------------------------------------------------------CAAATGTGT-----------------------------------------------------------------------------------------GTGACTGTGCGTGTGTGT-----------------------------------------GTGT-----------------------------------------------------------------------------------------------------------------------------------------------------GTGTTGGTCTAAGTGCATGCAAATGTTGACAATTAATTTATGAC----------------GATTACTCATGGCAGCTAAACTAACT------------------------------------------------------------------------------------------------------------------------------GTGACT--G--------------TTTATAGAGAGGAGTTGCTGATGGC---------------------CGGGCGGGGGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T
droTak1 scf7180000415381:115303-115440 - GTGTG-TGT-----------------------------------------------------------------------------------GTGT--------GT-----------------------------GT--GTGTGTGTGTGTGTGTGTGTGT-----------------------------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTG-------------------------TGTGTGTGTGTGTGTGTGTGTGT--GTGTGTG-------TG-----------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------TGGCCAGGATAAGTA----------TCCACTAAGCAGTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA---------------------A-----------------------------------------------------------------------------TGTGTT-------------G--------------
droEug1 scf7180000409008:753370-753486 - GTGTG-TGT-----------------------------------------------------------------------------------GTGC--------GT-----------------------------GT--GTGTGTGTGTGCGTGTGTGTGT-----------------------------------------------------------GTGTGCGTGTGTGTGTGTCTGCGTGTG-------------------------TGTGTATGCGTGTGTGGGTATGAGTAT--GTG-------TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTGCCCGATTA---------------------CAGGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
dm3 chr2R:16836527-16836698 - CG-TG--------------------------------------------------------------------------------------------TGAGCATGT-----------------------------------------------------------------------------------------GTGTGCATGTGCGTGTGTGTGAG---CG-------------------------------------------------------------------GGCTT------------------AG----------------------------------------CACATGTGAAAAGGTGAAAGGTCGAGGGGATAAGCAGCGTGAATATGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAATTCG-------------------------------------------------------AGGGGTTTTCGAATGC-------GGCAGCTTATTCAAATTTGC--------------------TAAATGCTCGCCTTATTTGTGCTAATTTGTG-------------------------------------------------------------------------------------------------
droSim2 2l:11314826-11314926 + TG-GG--------------------------------------------------------------------------------------------TGTGTGTGT-----------------------------------------------------------------------------------------GTGGGTGGGTGTTCGTGTGC-----------------------------ATGTGAG---------------------TGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAAAGGATACGTAGGGCTGTGGGAACCCTGTCTAATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG---------------------AAATGTTCGCAGGCG-------------------------------------------------------------------------------------------------
droSec2 scaffold_10:2911994-2912105 + GTGTG-TGT-----------------------------------------------------------------------------------GTGT--------GT-----------------------------GT--GTGTGTGTGTGTGTGTGTGTGT-----------------------------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTG-------------------------TGTGTGTGTGTGTGTGTATGTGT--GT--GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTG----------------------------------------------------------------------------------GCTGAACAGGCGCAG
droYak3 3L:4356802-4356995 - CA-TAATGCTGTGCCACAGTC-ACAGCGACGGCGAGTTTCCACT-----------GTACCGAGGTGAGTCCA--------CTGTACAGGT--------------GT-----------------------------------------------------------------------------------------GTGTATCCACAAG--------------------------------------------------CGAGTGCCCAC----------------------------------------TG--TACCG-----------GCGTTCCCAG------------------------------------------------------GTGGATCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTACATTTTGATAGCTTAATTAGCCGCTGTCATTGTGTGTCACTCGCATGTGCGGAGTGCAACAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGACG-------------G--------------
droEre2 scaffold_4784:6497366-6497588 - CA-TAATGCTGTGCCACAGTC-ACAGCGATGGAGAGTTTCCACT-----------GTACAGAGGTGAGTCCA----------------------------------------------------------------------------------------------------------------------------------CACAAG--------------------------------------------------CGAGTGCCCAC----------------------------------------TG--TGCCGTGGTGCGTAGTGCGCTCCCAG------------------------------------------------------GTGGATCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTACATTTTGATAGCTTAATTAGCCGCTGTCATTGTGTGTCACTCGCATGTGCAGAGTGCAACAGTTGACGGC--------------------------------ATCGGAAAATGC-------TATGAAAAT-----------------------------------------------GGGAAATGAGATGAA-------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
GA-TTATGCTATGTCACAGTC-ACAGCGACGGTGAATTTCCCAT-----------GTATCGAGGTAAGT-----CATTCAGTGAGTAAGTGAGTGAGTGGATGTG-TAGCTGACATACTGAGCGAGTGCGCGTGAGTGT--------------------------------------------------GTGTGTGTG---------------------------------------TGTGGGTGTG-------------------------GGTGTGGGTG----------TGGGTGT--AGG-------TG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACGGCTTAACCG---------------------CAGGACATTTTGATAGCTTAATTAGCTGGGAC-ATGTTGC--------------------------------GGCAGGCGGTTTAGGGATG--CGACAGGCGGCGGGCTGGTCTAATGC-------AACAGTTGATGGAAATGTGG--------------------TAA---------------------------ACATAACCATAACTCATTTGATATCTGTACAGATTTGTGTCTGCTGGGTTTTTGCTCGACACAATTTGATTAACAAT--TGTAT--------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................ATTCAGTGAGTAAGTGAGTGAGTGGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
..............................................................................................................................................................................................................................................GTGGGTGTG-------------------------GGTGTGGGTG----------TGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.10202000
.............................................................................................................................................................................................................................................TGTGGGTGTG-------------------------GGTGTGGGTG----------TGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10202000
.................................................................................................................................................................................................GTGTG---------------------------------------TGTGGGTGTG-------------------------GGTGTGGGTG----------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25100.10100001
.................................................................................................................................................................................................................................................GGTGTG-------------------------GGTGTGGGTG----------TGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000
.................................................................................................................................................................................................................................................GGTGTG-------------------------GGTGTGGGTG----------TGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100
.........................................................................................................................................GT--------------------------------------------------GTGTGTGTG---------------------------------------TGTGGGTGTG-------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
.............................................................................................................................................................................................................................................TGTGGGTGTG-------------------------GGTGTGGGTG----------TG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100100
..............................................................................................................................................................................................................................................GTGGGTGTG-------------------------GGTGTGGGTG----------TGGGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100100
.................................................................................................................................................................................................................................................GGTGTG-------------------------GGTGTGGGTG----------TGGGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100100
.......................................................................................................................................GTGT--------------------------------------------------GTGTGTGTG---------------------------------------TGTGGGTGTG-------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100001
................................................................................................................................................................................................................................................GGGTGTG-------------------------GGTGTGGGTG----------TGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000
droVir3
AG-CA--------------------------------------G-----------ATGTTTAT-----------------------------GTGC--------A------------CTCAGCGTGTGCAAGTGTGT--GTG------------TGTGTGT----------------------------------------------G-------------TGTGTGTGTGTGTGTGTGTGTGCATG-----------CGAATGGGCGCCTTTGTATG--------------TGT--GCATGTGCTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTAA--------------GCTGT--------------------------------TGCTGGCGGTCGTGGCATG--CAGCCACAGGCGGGC-----------TAGGGTTGTCAGCGCATCGAAACCTGCCAAAATAAATTTAAC---------------------AAAATTTAATATTTG-------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................TGTGTGT----------------------------------------------G-------------TGTGTGTGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.255000000000000000000000000000000000500000000000000000000000000000
.................................................................................................................................................................................................................................TGTGTGTGTGTGTGTGTGCATG-----------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................CAAGTGTGT--GTG------------TGTGTGT----------------------------------------------G-------------TGTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................GTGTGT--GTG------------TGTGTGT----------------------------------------------G-------------TGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................AGTGTGT--GTG------------TGTGTGT----------------------------------------------G-------------TGTGTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................................AGTGTGT--GTG------------TGTGTGT----------------------------------------------G-------------TGTGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000000000000000000000000000000010
droMoj3
TG-TA-----------------------------------------------------CTGAAATATAT-----CTAGCGGTGTATGC----GTGT--------GT-----------------------------GT--GTGTGTGTGTGTGTGTGTGTGT-----------------------------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTG-------------------------TGTGTGTGTGTGTGTGTTTGTGT------------------AG----------------------------------------TGCATATAACAAAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAATTCAAATGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTTATGCAACATGGCCTGG----------CA-------------------------------------------------------TTCCGTGTGGACACACGAGAGTGCGGGGG-------------G--------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................TGTGTGTGTGTGTTTGTGT------------------AG----------------------------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.171001000
droGri2
TG-TA-TGA---------------------------------------------------------------------------GT------A-AC--------AT-----------------------------GT--GAATGCATGTGT-TGTGTCTGT-----------------------------------------------------------GTGTGTGTGTGTGTTTGAGTGTGTGTG--TGTGTGTGT-----------------------GTGTATGCA--TGAGTGT--GTGCTTGCCT--CAGGC-----------AGCTGCGCAATGGCGACGACAGACATCAGATGCAACATGGC-AAGGGTCAAGGGGAGGAGCGGAGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAGCGGGC-----------TGGGGCA-------------------G--------------------CAA---------------------------TCGTGATCATGCCTCATTTTGCAACTGTACA-------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
TG-AG--------------------------------------------------------------------------------------------TGTAAGTGT-----------------------------------------------------------------------------------------GTGTGTGTGTTTGCGTGTGTGAGGTGTGTCTGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAGAGTTCTTTTGTGACTGGACGGACTGGATTGGATGACTTTTGGCTGATTGGCTGTCTGGGCGGCAGGCTTGTGTTTTGTTTTGTTGGTGCTGCTGCAAAACAAAAACGAAGTGCAATTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCAACTCAAAATT-----------GTTTTAC-------------------------------------------------------TTTTGTGTGTTTGTTCGGTACGGTTCGTT-------------T--------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGATTGGCTGTCTGGG......................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
droPer2
TG-AG--------------------------------------------------------------------------------------------TGTATGTGT-----------------------------------------------------------------------------------------GTGTGTGTGTTTGCGTGTGTGAGGTGTGTCTGTC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAGAGTTCTTTTGTGACTGGACGGACTGGATTGGATGACTTTTGGCTGATTGGCTGTCTGGGCGGCAGGCTTGTGTTTTGTTTTGTTGGTGCTGCTGCAAAACAAAAACGAAGTGCAATTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCAACTCAAAATT-----------GTTTTAC-------------------------------------------------------TTTTGTGTGTTTGTTCGGTACGGTTCGTT-------------T--------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TC-AC------------CGACAGCAGCGACAGCCGCTTTCTTTT-----------TGGCCAAATTAACTTTAGCCAGCCTATGGATGGCTGTGTGC----------------------------------------------------------TGTGTGTGTGTGAGT--GCTGTCTTAA----------------------------------------------------------------------------------------------------------------------------------------------------GCGCGCTGAT------------------------------------------------------GTGAGTGTGTGTGTGTGT----------------------TGAAGTTTATTGTGTG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTCTCAAG------------------------------------------------------GC-----------TA-----------TGCTAAAAATTTGTCCAGAACATTT-------------------------------------------------------------------------------------------------GCACATTTTGATTTGTTATGTTGTGG--------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................GTGAGTGTGTGTGTGTGT----------------------T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................19140.071010000
droBip1
TG-TG--------------------------------------------------------------------------------------------TGGCTTTT-TAGTACACAAATTATGCGCTTGTGTGGGTGTGT--------------------------------------------------TTGTGTGTT-----------------------------------TGTTAGT----ATGTGAG---------------------TGTGTG--------------TGGGTGT--GTG-------TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCGGCTCAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGCA-------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CC-CA--------------------------------------T-----------TTATTTTTGTGTGT-----CCTTCTCTGTGTGTGTGTGTGT--------GT-----------------------------GT--GTGTGTGTGTGTGTGTGTGTGT-----------------------------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTG-------------------------TGTGTGTGTGTGTGTGTGTGTGTGTGT--GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTG-------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TA-AT--------------------------------------------------------------------------------------------CAAATGTGT-----------------------------------------------------------------------------------------GCGAGTATGCGTGTGTGTGT---------------------------------------GTGT-----------------------------------------------------------------------------------------------------------------------------------------------------GTGTTGGACTAAGTGCATGCAAATGTTGACAATTAATTTATGAC----------------GATTACTCATGGCAGCTAAACTAACT------------------------------------------------------------------------------------------------------------------------------GTGACT--G--------------TTTATAGAAAAGAGTTGCTAATGGCAGGGGGCTCAAAGTTGGCCGGCCAGCGGGGGGTTAAAGGAAAGA-------AGAAGAAGAAAAA--------------------------------------------------AATA----------------------------------------------------------------------GGG-------------T--------------SizeHit CountTotal NormTotal
No Reads
droEle1
GTGTG-TGT-----------------------------------------------------------------------------------GTGT--------GT-----------------------------GT--GTGTGTGTGTGTGTGTGTGTGT-----------------------------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTG-------------------------TGTGTGTGTGTGTGTGTGTGTGT--GAGTGTG-------AG-----------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------------------------------------------------------------------GTT---CG----TTCCCAGATACTTTTTAGCCGCAGG--------------------------------TGGT--------------------------------GGCTGAAAGTTAAGGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A--------------SizeHit CountTotal NormTotal
No Reads
droRho1
GT-GGATTT------------------------------TCCGTATTCGCTGTTTGTATTGTTGTTTGC-----CTTTCCATATGTGGTTGTGTGT--------G--------------------------------------------------GAGAAAGTGTGTGTTAGGTGGTGAAAGTGTATGTGT----GTGTGTGTGT-------------------------------------------------GTGT-----------------------------------------------------------------------------------------------------------------------------------------------------GTGTAAGAGTGTGTGTGTGTGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGGCATGTG-------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TA-AT--------------------------------------------------------------------------------------------CAAATGTGT-----------------------------------------------------------------------------------------GTGACTGTGCGTGTGTGT-----------------------------------------GTGT-----------------------------------------------------------------------------------------------------------------------------------------------------GTGTTGGTCTAAGTGCATGCAAATGTTGACAATTAATTTATGAC----------------GATTACTCATGGCAGCTAAACTAACT------------------------------------------------------------------------------------------------------------------------------GTGACT--G--------------TTTATAGAGAGGAGTTGCTGATGGC---------------------CGGGCGGGGGGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
droTak1
GTGTG-TGT-----------------------------------------------------------------------------------GTGT--------GT-----------------------------GT--GTGTGTGTGTGTGTGTGTGTGT-----------------------------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTG-------------------------TGTGTGTGTGTGTGTGTGTGTGT--GTGTGTG-------TG-----------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------TGGCCAGGATAAGTA----------TCCACTAAGCAGTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA---------------------A-----------------------------------------------------------------------------TGTGTT-------------G--------------SizeHit CountTotal NormTotal
No Reads
droEug1
GTGTG-TGT-----------------------------------------------------------------------------------GTGC--------GT-----------------------------GT--GTGTGTGTGTGCGTGTGTGTGT-----------------------------------------------------------GTGTGCGTGTGTGTGTGTCTGCGTGTG-------------------------TGTGTATGCGTGTGTGGGTATGAGTAT--GTG-------TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTGCCCGATTA---------------------CAGGAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
dm3
CG-TG--------------------------------------------------------------------------------------------TGAGCATGT-----------------------------------------------------------------------------------------GTGTGCATGTGCGTGTGTGTGAG---CG-------------------------------------------------------------------GGCTT------------------AG----------------------------------------CACATGTGAAAAGGTGAAAGGTCGAGGGGATAAGCAGCGTGAATATGTGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAATTCG-------------------------------------------------------AGGGGTTTTCGAATGC-------GGCAGCTTATTCAAATTTGC--------------------TAAATGCTCGCCTTATTTGTGCTAATTTGTG-------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................GTGCATGTGCGTGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1850.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................GT-----------------------------------------------------------------------------------------GTGTGCATGTGCGTGTGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
droSim2
TG-GG--------------------------------------------------------------------------------------------TGTGTGTGT-----------------------------------------------------------------------------------------GTGGGTGGGTGTTCGTGTGC-----------------------------ATGTGAG---------------------TGTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGAAAGGATACGTAGGGCTGTGGGAACCCTGTCTAATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GG---------------------AAATGTTCGCAGGCG-------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
GTGTG-TGT-----------------------------------------------------------------------------------GTGT--------GT-----------------------------GT--GTGTGTGTGTGTGTGTGTGTGT-----------------------------------------------------------GTGTGTGTGTGTGTGTGTGTGTGTGTG-------------------------TGTGTGTGTGTGTGTGTATGTGT--GT--GT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTG----------------------------------------------------------------------------------GCTGAACAGGCGCAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................TGTGTGTGTGTGTGTGTGTGT-----------------------------------------------------------GTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530003
........T-----------------------------------------------------------------------------------GTGT--------GT-----------------------------GT--GTGTGTGTGTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1530300
..............................................................................................................................................TGTGTGTGTGTGTGTGTGT-----------------------------------------------------------GTGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530003
.............................................................................................TGT--------GT-----------------------------GT--GTGTGTGTGTGTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1530300
........................................................................................................................................T--GTGTGTGTGTGTGTGTGTGTGT-----------------------------------------------------------G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530003
.........................................................................................................T-----------------------------GT--GTGTGTGTGTGTGTGTGTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530003
..................................................................................................................................................TGTGTGTGTGTGTGT-----------------------------------------------------------GTGTGTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530003
............................................................................................................................................................................................................................................GTGTGTGTGTG-------------------------TGTGTGTGTGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1530102
..............................................................................................................................................................................................................................................GTGTGTGTG-------------------------TGTGTGTGTGTGTGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1530102
................................................................................................................................................TGTGTGTGTGTGTGTGT-----------------------------------------------------------GTGTGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1530003
...............................................................................................................................................................................................................................TGTGTGTGTGTGTGTGTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
...........................................................................................................................................GTGTGTGTGTGTGTGTGTGTGT-----------------------------------------------------------GTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020200
.......................................................................................................................................................................................................................................TGTGTGTGTGTGTGTG-------------------------TGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
..............................................................................................GT--------GT-----------------------------GT--GTGTGTGTGTGTGTGTGTGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020200
........................................................................................................................................................................................................................................GTGTGTGTGTGTGTG-------------------------TGTGTGTGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1020002
.............................................................................................................................................................................................................................TGTGTGTGTGTGTGTGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
.................................................................................................................................................GTGTGTGTGTGTGTGT-----------------------------------------------------------GTGTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
....................................................................................................................................................................................................................................GTGTGTGTGTGTGTGTGTG-------------------------TGTGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1020002
.......................................................................................................................................GT--GTGTGTGTGTGTGTGTGTGTGT-----------------------------------------------------------GT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020200
.......................................................................................................................................................GTGTGTGTGT-----------------------------------------------------------GTGTGTGTGTGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
.....................................................................................................................................................................................................................................TGTGTGTGTGTGTGTGTG-------------------------T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
...................................................................................................................................................GTGTGTGTGTGTGT-----------------------------------------------------------GTGTGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
.........................................................................................................................................................GTGTGTGT-----------------------------------------------------------GTGTGTGTGTGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
.....................................................................................................................................................GTGTGTGTGTGT-----------------------------------------------------------GTGTGTGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
......................................................................................................................................................................................................................................GTGTGTGTGTGTGTGTG-------------------------TGTGTGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1020002
.........................................................................................................................................................................................................................................TGTGTGTGTGTGTG-------------------------TGTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
........................................................................................................GT-----------------------------GT--GTGTGTGTGTGTGTGTGTGTGT-----------------------------------------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020200
.............................................................................................................................................................GTGT-----------------------------------------------------------GTGTGTGTGTGTGTGTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
..................................................................................................................................................................................................................................GTGTGTGTGTGTGTGTGTGTG-------------------------TGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1020002
...................................................................................................................................................................................................................................TGTGTGTGTGTGTGTGTGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
...........................................................................................................................................................GTGTGT-----------------------------------------------------------GTGTGTGTGTGTGTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1020200
.................................................................................................................................................................................................................................TGTGTGTGTGTGTGTGTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
..........................................................................................................................................................................................................................................GTGTGTGTGTGTG-------------------------TGTGTGTGTGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1020002
...........................................................................................................................................................................................................................................TGTGTGTGTGTG-------------------------TGTGTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020002
......................................................................................................................................................................................................................................................G-------------------------TGTGTGTGTGTGTGTGTATGTGT--.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24170.0610100
......................................................................................................................................................................................................................................................................................TGTGTGTGTGTATGTGT--GT--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510001
........T-----------------------------------------------------------------------------------GTGT--------GT-----------------------------GT--GTGTGTGTGTGTGTGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100
......TGT-----------------------------------------------------------------------------------GTGT--------GT-----------------------------GT--GTGTGTGTGTGTGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100
...TG-TGT-----------------------------------------------------------------------------------GTGT--------GT-----------------------------GT--GTGTGTGTGTGTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100
droYak3
CA-TAATGCTGTGCCACAGTC-ACAGCGACGGCGAGTTTCCACT-----------GTACCGAGGTGAGTCCA--------CTGTACAGGT--------------GT-----------------------------------------------------------------------------------------GTGTATCCACAAG--------------------------------------------------CGAGTGCCCAC----------------------------------------TG--TACCG-----------GCGTTCCCAG------------------------------------------------------GTGGATCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTACATTTTGATAGCTTAATTAGCCGCTGTCATTGTGTGTCACTCGCATGTGCGGAGTGCAACAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGACG-------------G--------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
CA-TAATGCTGTGCCACAGTC-ACAGCGATGGAGAGTTTCCACT-----------GTACAGAGGTGAGTCCA----------------------------------------------------------------------------------------------------------------------------------CACAAG--------------------------------------------------CGAGTGCCCAC----------------------------------------TG--TGCCGTGGTGCGTAGTGCGCTCCCAG------------------------------------------------------GTGGATCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGTACATTTTGATAGCTTAATTAGCCGCTGTCATTGTGTGTCACTCGCATGTGCAGAGTGCAACAGTTGACGGC--------------------------------ATCGGAAAATGC-------TATGAAAAT-----------------------------------------------GGGAAATGAGATGAA-------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 03:21 AM