ID:

dwi_2100

 Coordinate:

scf2_1100000004768:1038139-1038389 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.4 -26.4 -26.3

Flybase annnotation

exon [dwil_GLEANR_3147:14]; CDS [Dwil\GK20379-cds]; exon [dwil_GLEANR_3147:13]; CDS [Dwil\GK20379-cds]; intron [Dwil\GK20379-in]

Repeatable elements

NameClassFamilyStrand
(TTGG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAAGGATGACAGCATCGTACTGAAACGCAATAGCGAAGCCCGACAATCGGGTAAGTAGAGTAGTGTAGGGGGATTATAACAATCGGCTAGCCATTTGTCTATGTCCCAGTCAAACACCAACCAACCAATCAACCAACCACCAACCCATCCAACCACCCCAATCCACAACTCTCCTTCATACATTTCTTCACTTACCTACATACATATCTCTCTATATATATATAAATATATTGTAAAACAAAAAAACCAAACGAAAATTGTGTCCCCTCACCGTTCCGTTACTTGAACTCGCAACGATTAGATAATCCGCCGCCATTGCCAACAACGATGCCGCCTTTAGGCAGTCAGCAA
**************************************************((.(((.(((((((((((((((((....((((..((....))..))))....))))).((.....)).............................................................................)))))))............((((((......))))))...................(((..(((.(((......))).))).))))))))..))).)).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 V117
male body		 M045
female body
 M020
head
 V119
head
................GTACTGAAACGCAATAGCGAA.......................................................................................................................................................................................................................................................................................................................... 21 0 1 15.00 15 9 6 0 0 0
...............CGTACTGAAACGCAATAGCGAA.......................................................................................................................................................................................................................................................................................................................... 22 0 1 3.00 3 0 3 0 0 0
................GTACTGAAACGCAATAGCGAAGCC....................................................................................................................................................................................................................................................................................................................... 24 0 1 2.00 2 0 0 2 0 0
...........................CAATAGCGAAGCCCGACAATCGG............................................................................................................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0
................GTACTGAAACGCAATAGCGAAG......................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
.......GACAGCATCGTACTGAAACGC................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
....................................AGTCCGACGATCGCGTAAGTA...................................................................................................................................................................................................................................................................................................... 21 3 1 1.00 1 0 0 1 0 0
......................AAACGCAATAGCGAAGCCCGAC................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0
.............................ATAGCGAAGCCCGACAATCGGG............................................................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0
......TGACAGCATCGTACTGAAACG.................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0
..........AGCATCGTACTGAAACGCAATAGC............................................................................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................AACCACCCCAATCCACAACTCTCCTTC.............................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0
............................AATAGCGAAGCCCGACAATCGG............................................................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0
................GTACTGAAACGCAATAGCGAAGCCC...................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
..............................TAGCGAAGCCCGACAATCGG............................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0
.....ATGACAGCATCGTACTGAAACGCAAT................................................................................................................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 1
..................ACTGAAACGCAATATCGAAGCCC...................................................................................................................................................................................................................................................................................................................... 23 1 1 1.00 1 0 0 0 1 0
.......GACAGCATCGTACTGAAACGCAATAGC............................................................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
...................................CAGTCCGACGATCGGGTAAGT....................................................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0
................................................................................................................................................................................................................................................................................GTACCGTTACTTGGACTTGC........................................................... 20 3 5 0.20 1 0 0 1 0 0
.......................................................CCGAGTAGTGTAGTGGGA...................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0 0
....................................AGTCCGACGATCGGGTGA......................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0
....................................................................................GGCGAACCAGTTGTCTATG........................................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 1 0 0
................................................................................................................................................................................................................................AATATATTGTAAAAGAAACA........................................................................................................... 20 2 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

GTTCCTACTGTCGTAGCATGACTTTGCGTTATCGCTTCGGGCTGTTAGCCCATTCATCTCATCACATCCCCCTAATATTGTTAGCCGATCGGTAAACAGATACAGGGTCAGTTTGTGGTTGGTTGGTTAGTTGGTTGGTGGTTGGGTAGGTTGGTGGGGTTAGGTGTTGAGAGGAAGTATGTAAAGAAGTGAATGGATGTATGTATAGAGAGATATATATATATTTATATAACATTTTGTTTTTTTGGTTTGCTTTTAACACAGGGGAGTGGCAAGGCAATGAACTTGAGCGTTGCTAATCTATTAGGCGGCGGTAACGGTTGTTGCTACGGCGGAAATCCGTCAGTCGTT
**************************************************((.(((.(((((((((((((((((....((((..((....))..))))....))))).((.....)).............................................................................)))))))............((((((......))))))...................(((..(((.(((......))).))).))))))))..))).)).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V117
male body		 M045
female body
 V119
head
 M020
head
 V118
embryo
.......................................................................................................................................................TGGCGGGGTTAGCTGTTGAGA................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0
.............................................................................................................................................TTGGGTAGGGTGGTGGGGT............................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................CGTGAATGGATGTATGTATAG............................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................................................CTGCTATGGCGCAAATCCG......... 19 3 1 1.00 1 0 0 1 0 0
............................................................................................................................................................GGGTTGGGTGTGGAGAGGAA............................................................................................................................................................................... 20 2 4 0.25 1 1 0 0 0 0
................................................................................................................................................GGTAGGTTGATGGGGTTC............................................................................................................................................................................................. 18 2 5 0.20 1 0 0 0 1 0
................................................................................................................................................................................................................................................................TAGCGCATGGGAGTGGCA............................................................................. 18 3 12 0.17 2 0 2 0 0 0
.....................................................................................................................................................................................................................................................TGGTTCGCTTTTAGGACAGG...................................................................................... 20 3 7 0.14 1 0 1 0 0 0
.........................................................................................................................................................GTGGGGATCGGTGTTGAG.................................................................................................................................................................................... 18 2 7 0.14 1 0 1 0 0 0
................................................................................................................................................AGAAGGTTAGTGGGGTTAGG........................................................................................................................................................................................... 20 3 10 0.10 1 1 0 0 0 0
.....................................................................................................................................................................................TCAAGAAGGGAATGGGTGTA...................................................................................................................................................... 20 3 14 0.07 1 0 0 1 0 0
...........................................................................................................................................GATTGGGTGGGTTGGTGGTGTT.............................................................................................................................................................................................. 22 3 15 0.07 1 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................................TGACGGCGGTAACGGTTGT........................... 19 2 15 0.07 1 0 1 0 0 0
.........................................................................................................................................GTGGTTCGGTAGGTTGGTTG.................................................................................................................................................................................................. 20 2 19 0.05 1 0 1 0 0 0
.............................................................................................................................................TTGGGGAGGGTGCTGGGGTT.............................................................................................................................................................................................. 20 3 19 0.05 1 0 1 0 0 0
....................................................................................................................................................................................................................................................................................................................CGGCGGTAACGGTTGTTATG....................... 20 3 20 0.05 1 0 0 1 0 0
.........................................................................................................................................................GTGGGGATAGGTGTCGAGT................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0
................................................................................................................................GGTTGGTTGGTGGTTGGGT............................................................................................................................................................................................................ 19 1 20 0.05 1 0 0 1 0 0
........................................................................................................................................GGTGGTTGGGTAGGTGGGT.................................................................................................................................................................................................... 19 1 20 0.05 1 0 0 0 0 1
............................................................................................................................GGTTCTTTGGTTGGGGGTTG............................................................................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0
......................................................................................................CGGGGTCGGTTTGTGGGTGG..................................................................................................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004768:1038089-1038439 - dwi_2100 C---AAGGA--------------TGACAGCATCGTACTGAAACGCAAT----------AGCGAAGCCCGACAATCGGGTAAGTAGAGTAGTGTAGG-------GGGA------------------------------TTA---TAACA------------------ATCGGCTAGCCATTTGTCTATGTCCCAGTCAAACACCAACCAACCAATCAACCAACCACCAACCCATCCAACCACCCCAATCCACAACTCTCCTTCATA----------CATTTCTTCACTTACCTACATACATATCTCTCTATATA-----------------TATATAAA------------------------TAT----------------A-TTGTAAAACAAAAAAACCA--AACG------------------------------------------------------------------------------------------------------------------------AAAATTGTGTCCCCTCACCGTTCCGTTACTTGAACTC--G--C------AACG-ATTAGATA----------------------ATCCGCCGCCATTGCCAACAACGATGCCGCCTTTAGGCAGT------------CAGCAA
droVir3 scaffold_13049:5252058-5252351 + dvi_18438 C---AAAGA--------------TGACAGCGCCGTGATGATGCGCAAC----------AGCGAGTCCAGACAGTCGGGTGAGTAGCTT----CGGG-------TTGG--------------------------CGTCCCAGTGTAG-----------CTAACG-CC----TTCAGCTATTTGTGT--------------------------------------------------------------------------------CT--GTTCC-CACACACACACACACACACACATATATACACAAAAACTCACACACACATACC----------------------------------TTTTGT---CA------TCCA-TTGTAAAACGAAAAAAAAAAAAACGTGTCCC--------------------------------------------------------------------------------------------------------------------------CTGCCCAAA-TT----------C---GACTCG--T------AAAT-ATTAGATA----------------------ATCCGCCGCCATTGCCCACAACAATGCCGCCCCTGGGCAGCAGCGCCC---ATCAGCAG
droMoj3 scaffold_6680:3618289-3618560 + C---AGAGA--------------TGACAGTGGCGTTCTAATGCGTAAC----------AGTGAATCCAGACAGTCGGGTAAGTAGTCCAA---GGG-------TTAT------------TCACCCACTGTAGTTAAC--CTTGTAG-----------TTAACTGCA----TTTCGCTA-TTGTGT--------------------------------------------------------------------------------TT--GTA-C-CACACACACACACACACACACACACAC------AACCACAACCACATATACCTCA-------------------------------TTGTAA---AC--------------------------------AACGTGTCCC--------------------------------------------------------------------------------------------------------------------------TTTCCAAAAACT----------C---GCC--GCGTATACATATAA-ATTAGATA----------------------ATCCGCCGCCATTGCCAACAACGATGCCGCCATTGGGCA----------------GCAG
droGri2 scaffold_15110:13732579-13732864 - dgr_329 C---AAAGA--------------TGACAGCGCTGTTCTCATGCGCAGC----------AGCGAGTCCAGGCAGTCCGGTAAGTGGCCCAA-TCGTG-------TGGC--------------------------AGTCCCC----ACTCA-TTGTGTA---------GTCAGCTATATATTTGTGT--------------------------------------------------------------------------------TT--GTA-C-CACACACACACACACACACACATATACACACATACATACATATA-----------CACATACT------------------------TACTT---T--GATCACCCATTTGTAAA--------------AACGTGTACC--------------------------------------------------------------------------------------------------------------------------CCTCCAAAAAT-----------C---GAC--T--T------GTAT-ATTAGATA----------------------ATCCGCCGCCATTGCCCACAACGATGCCGCCCTTGGGCAGC---GCCAGTAGTCATCAT
dp5 2:26511599-26511743 - T---TACTC--------------CCATGCAGTT-CATAG----------------------------------------------------------------------------------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCATAGA------------------------TCATT---T--GCGAAACAGTTTAAACG--------------AACGAGTGGC--------------------------------------------------------------CTTGGGTCCGCTTAGTGTATTCTCGAATACGGCCGATTT---------------------------------------------------------------------AAGGAGCTCC------------------GTTCTCAGCTATAGTCAACAGCCACACCA--------------------------GCCA
droPer2 scaffold_172:63666-63937 + C---ATGTAGCCCCTACGATCTACGATAGCTATTCTC------------------------------------------AATATATATATACAAAC-------ACGT--------------------------ACACACA---------------------------TA------------------------------------------------------------------------------------------------------------------------------------TATATAGATATATATATA-----------TATATATGTATATATACAAAC-------AAATTGTAT---AACA--------------------------------CTTGACTTCCTCCAAGAACTTGAAACACCAATTTACCCAAGGCAACCTCTAAGCGACATAACCCAGGCGGCAAGGGGCCGCCTTCTGTCCCACCGAGT--GGCCA--TG---------------------------------------------------------------------CAGGAGTTGCGTCGCAAGCGCAGCTCGCTTCTGCAGCCATTGCCAGAG------------------------------------CAG
droAna3 scaffold_13335:1796945-1797025 + C---G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAATT--------------------------------------------------------------------------------TT--TTGCC-AATGCAT-----------------------------------------------------------ACAGTACTCT-------ATGATATAT---GATA----------------------------------------------------------------------------------------------------------------------------------------------AACATA-------------TATTTAAAAAAAA----------AAAAACC--A--A------ATGC-AAA--------------------------------------------------------------------------------------
droBip1 scf7180000396385:157224-157408 - C---AACCA--------------GCAAACCACC-TGTAGCCACCAAACCACCACCAATCAACCAACCAACCAACCAAATCAGTAAACCAAACCACC-------CAAAACAAAACCCTTCTCACCC--------GTTCTTAATGTGA-----------TTTATT-CG----CTCATATCTCTCTGT--------------------------------------------------------------------------------TT--GTG------------------------------------------------------------TGT----------------------------GTGT---TT------CGCT-CTAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAAAAAAAAAATA---AAA------------CAAAAA
droKik1 scf7180000302391:489057-489311 + CTTTAAGGA--------------TGACAGTGCGGTGCTGACACGCAAC----------AGCGAGGCCAGACAATCGGGTGAGTTTTCCCAAGGGAG-------TAGT--------------------------AAGT--A-----------------------------AGGCAGCCATTTGTGT--------------------------------------------------------------------------------CTCTCTGTCCCATACAC--------------------------CACCACCGCCACCTGC------------------TCCTCCTCC-------ACATTACTCCTCCTCA----------------------------------------------------------------------------------------------------------------------------------------------CTCACATTGTACAAAATTGTCCTCTTACAACG------------ATGCC--GC-T------GGGCTATTAGATA----------------------ATCCGCCGCCTTTACCCACGACAATGCCACCAGTGGGTGGC------------CACCAG
droFic1 scf7180000454105:1695957-1696191 + C---AGGGA--------------CGACAGCACAGTGCTGACGCGCAAC----------AGCGAGGCCAGACAATCGGGTAAGTGCTCCAACCAGGGAACCAATGGGG--------------------------ATCCCCA---------------------------GT-CCCAGCCACCAGTGT--------------------------------------------------------------------------------CT--CTGTC-CACACAC-----------------------------------------------------------CCCGACCTCC-------ACATTACTC---C--A----------------------------------------------------------------------------------------------------------------------------------------------CTCACATTGTA-CAAATTGTCCTCCAACAACG----------CGATGTC--G--T------GTGG-TGTAGATA----------------------ATCCGCCGCCATTGCCAACGACGATGCCACCAGTGGGTGGT------------C---AC
droEle1 scf7180000491249:1872421-1872683 - C---AAGGA--------------TGACAGCGCGGTGCTGACACGCAAC----------AGCGAGGCCAGACAATCGGGTGAGTACTCCTAAATGGG-------TGGG--------------------------ATGACCA---TGCCCATTTGTG-------------TCCCAAGCCATTTGTGT--------------------------------------------------------------------------------CT--CTGTC-CATACAC-----------------------------------------------------------CTCGACC----------------------------------------------------------------------------------------------------------------------------------------CAGTCAATCCAACTCCACATTCAACCAATCCACTCACATTGTA-CAAATTGTCCTCCAAAAACG----------CAATGCC--GTGT------GTGT-ATTAGAAA----------------------ATCCGCCGCCATTGCCAACGACGATGCCACCAGTGGGTGGC------------CAGCAT
droRho1 scf7180000777856:24955-25194 + C---AAGGA--------------TGACAGCGCGGTGCTGACACGCAAC----------AGCGAGGCCAGACAATCGGGTAAGTCTTCCTAAATGGG-------TGGT--------------------------AATCCCA--------------------------GTCCCCCAGCCATCTGTGT--------------------------------------------------------------------------------CT--CTGTC-CATACAC-----------------------------------------------------------CTCAACCTCCCCAACCAACATCAACC---C--A----------------------------------------------------------------------------------------------------------------------------------------------CTTACATTGTA-AAAATTGTCCTTCAACAACG----------CAATGCC--G--T------GTGT-ATTAGATA----------------------ATCCGCCGCCATTGCCAACGACGATGCCACCGGTGGGTGGC------------CAGCAT
droBia1 scf7180000302428:2733879-2734113 + C---AAGGA--------------TGACAACGCGGTGCTGGCACGCAAC----------AGCGAGGCCAGACAATCGGGTGAGTCCTTAGAACTGGG-------TAGT--------------------------TGCCATA---------------------------TCCCCTAGCCATTTGTGT--------------------------------------------------------------------------------CT--CTGTC-CATACAC-----------------------------------------------------------C---ACCTAC-------ATATTATTC---C--A----------------------------------------------------------------------------------------------------------------------------------------------CTCACATTGTA-CAAATTGTCCTCCAACAACGTGCCAA----CAATGCC--G--T------GTGT-ATTAGATA----------------------ATCCGCCGCCATTGCCAACGACGATGCCACCGGTGGGTGGC------------CAGCAT
droTak1 scf7180000415345:322743-322908 + G---GGGTG--------------TCATAGCTGTTAGCAGTTGTT------------------------------------TGTTTACTAAACAGAA-------CATC--------------------------ACACAAA---------------------------CCAACCAACCAA--------------------------------------CCACCCACAA--------------------------------------TC--ACGCC-CACACAC--------------------------ACCCACCTACAGATGTTACTCA------------------------------------A---TATA----------------------------------------------------------------------------------------------------------------------------------------------TATAAACTGTG--TATT--CTCTCT---------------------------------------A-TATATATA----------------------TTTCGATATCGTAGCC----------------------------------------CAA
droEug1 scf7180000409466:1094554-1094782 + C---AAGGA--------------TGACAGCGCGGTGCTGACACGCAAC----------AGCGAGGCCAGACAATCGGGTAAGTCCTCAAAACTAGG-------TAGT--------------------------AGTCCCT---------------------------TCCCCTAGCCATTTGTGT--------------------------------------------------------------------------------CT--CTGTC-CATACAC-----------------------------------------------------------AC---CCTTC-------ACATTATTC---C--A----------------------------------------------------------------------------------------------------------------------------------------------CTCACATTGTA-AAAATTGTCCTCCAACAACG----------CAATGCC--G--T------GTGT-AATAGATA----------------------ATCCGCCGCCATTGCCAACGACGATGCCACCAGTGGGTGGC------------CACCAT
dm3 chr3L:3366261-3366493 + C---AAGGA--------------TGATAACGCGTTGTTGACGCGCAAC----------AGCGAGGCCAGACAATCGGGTAAGTTCTCCAAACTAGG-------TGGT--------------------------ATTCCCA---------------------------TTTCCGAGCTATTTGTGT--------------------------------------------------------------------------------CT--TTGTC-CATACAC-----------------------------------------------------------CTGCTCCTCC-------ACATTGTTT---CACA----------------------------------------------------------------------------------------------------------------------------------------------CTCACATTGTA--AAATTGTCCTCCAACAACG----------CAATGCC--G--T------ATGT-ATTAGATA----------------------ATCCGCCGCCATTGCCAACAACGATGCCACCGGTGGGTGGC------------CAGCAT
droSim2 3l:3262922-3263154 + dsi_4010 C---AAGGA--------------CGATAACGCGTTGTTGACGCGCAAC----------AGCGAGGCCAGGCAATCGGGTAAGTTCTCCAAACTAGG-------TGGT--------------------------ATTCCCA---------------------------TTTCCTAGCCATTTGTGT--------------------------------------------------------------------------------CT--TTGTC-CATACAC-----------------------------------------------------------CTACTCCTCC-------ACATTGTTT---CACA----------------------------------------------------------------------------------------------------------------------------------------------CTCACATTGTA--AAATTGTCCTCCAACAACG----------CAATGCC--G--T------ATGT-ATTAGATA----------------------ATCCGCCGCCATTGCCAACAACGATGCCACCAGTGGGTGGC------------CAGCAT
droSec2 scaffold_2:3357606-3357838 + T---AAGGA--------------CGATAACGCGTTGTTGACGCGCAAC----------AGCGAGGCCAGGCAATCGGGTAAGTTCTCCAAACTAGG-------TGGT--------------------------ATTCCCA---------------------------TTTCCTAGCTATTTGTGT--------------------------------------------------------------------------------CT--TTGTC-CATACAC-----------------------------------------------------------CTACTCCTCC-------ACATTGTTT---CACA----------------------------------------------------------------------------------------------------------------------------------------------CTCACATTGTA--AAATTGTCCTCCAACAACG----------CAATGCC--G--T------ATGT-ATTAGATA----------------------ATCCGCCGCCATTGCCAACAACGATGCCACCGGTGGGTGGC------------CAGCAT
droYak3 3L:3913325-3913557 + C---AAGGA--------------TGATAACGCGTTGTTGGCGCGCAAC----------AGCGAGGCCAGACAATCGGGTAAGTTCTCCAAACTGGG-------TGAA--------------------------ATTCCCA---------------------------TTTGCTAGCCATTTGTGT--------------------------------------------------------------------------------CT--CTGTC-CATACAC-----------------------------------------------------------CCTCTCCTTC-------ACATTGTTT---CACA----------------------------------------------------------------------------------------------------------------------------------------------CTCACATTGTA--AAATTGTCCTCCAACAACG----------CAATGCC--G--T------ATGT-ATTAGATA----------------------ATCCGCCGCCATTGCCAACAACGATGCCACCGGTGGGTGGC------------CAGCAT
droEre2 scaffold_4784:6056185-6056417 + C---AAGGA--------------TGATAACGCGTTGTTGACGCGCAAC----------AGCGAGGCCAGACAATCGGGTAAGTTCTCCAAACTGGG-------TGGT--------------------------ATTCCCA---------------------------TTTGCTAGCCATTTGTGT--------------------------------------------------------------------------------CT--CTGTC-CATACAC-----------------------------------------------------------CCTCTCCTCC-------ACATTGTTT---CACA----------------------------------------------------------------------------------------------------------------------------------------------CTCACATTGTA--AAATTGTCCTCCAACAACG----------CAATGCC--G--T------ATGT-ATTAGATA----------------------ATCCGCCGCCATTGCCAACGACGATGCCACCGGTGGGTGGC------------CAGCAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
C---AAGGA--------------TGACAGCATCGTACTGAAACGCAAT----------AGCGAAGCCCGACAATCGGGTAAGTAGAGTAGTGTAGG-------GGGA------------------------------TTA---TAACA------------------ATCGGCTAGCCATTTGTCTATGTCCCAGTCAAACACCAACCAACCAATCAACCAACCACCAACCCATCCAACCACCCCAATCCACAACTCTCCTTCATA----------CATTTCTTCACTTACCTACATACATATCTCTCTATATA-----------------TATATAAA------------------------TAT----------------A-TTGTAAAACAAAAAAACCA--AACG------------------------------------------------------------------------------------------------------------------------AAAATTGTGTCCCCTCACCGTTCCGTTACTTGAACTC--G--C------AACG-ATTAGATA----------------------ATCCGCCGCCATTGCCAACAACGATGCCGCCTTTAGGCAGT------------CAGCAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................GTACTGAAACGCAAT----------AGCGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21115.001500690
................................CGTACTGAAACGCAAT----------AGCGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.00300300
.................................GTACTGAAACGCAAT----------AGCGAAGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00202000
............................................CAAT----------AGCGAAGCCCGACAATCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
.................................GTACTGAAACGCAAT----------AGCGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
........................GACAGCATCGTACTGAAACGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.......................................AAACGCAAT----------AGCGAAGCCCGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
..............................................AT----------AGCGAAGCCCGACAATCGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.......................TGACAGCATCGTACTGAAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
...........................AGCATCGTACTGAAACGCAAT----------AGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
...........................................................................................................................................................................................................................................AACCACCCCAATCCACAACTCTCCTTC.........................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.............................................AAT----------AGCGAAGCCCGACAATCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.................................GTACTGAAACGCAAT----------AGCGAAGCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
...............................................T----------AGCGAAGCCCGACAATCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
........A--------------TGACAGCATCGTACTGAAACGCAAT----------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100001
........................GACAGCATCGTACTGAAACGCAAT----------AGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
droVir3
C---AAAGA--------------TGACAGCGCCGTGATGATGCGCAAC----------AGCGAGTCCAGACAGTCGGGTGAGTAGCTT----CGGG-------TTGG--------------------------CGTCCCAGTGTAG-----------CTAACG-CC----TTCAGCTATTTGTGT--------------------------------------------------------------------------------CT--GTTCC-CACACACACACACACACACACATATATACACAAAAACTCACACACACATACC----------------------------------TTTTGT---CA------TCCA-TTGTAAAACGAAAAAAAAAAAAACGTGTCCC--------------------------------------------------------------------------------------------------------------------------CTGCCCAAA-TT----------C---GACTCG--T------AAAT-ATTAGATA----------------------ATCCGCCGCCATTGCCCACAACAATGCCGCCCCTGGGCAGCAGCGCCC---ATCAGCAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........A--------------TGACAGCGCCGTGATGATGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002001000000000000000000000000000000000000000000000000000000000010
...........................AGCGCCGTGATGATGCGCAAC----------AGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
.........................ACAGCGCCGTGATGATGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.......................TGACAGCGCCGTGATGATGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
............................................CAAC----------AGCGAGTCCAGACAGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
........................GACAGCGCCGTGATGATGCGCAAC----------AGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000010000000000000000000000000000000000000000000000
........................GACAGCGCCGTGATGATGCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
..........................CAGCGCCGTGATGATGCGCAAC----------AGCGAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000010000000000000000000000000000000000000000000
.........................................................................................................................................CCAGTGTAG-----------CTAACG-CC----TTCAGCTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000010000000000000000000000000000
........................GACAGCGCCGTGATGATGCGCAAC----------AGCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000000000000000000000000000000000001000
...........................................GCAAC----------AGCGAGTCCAGACAGTCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
...........................AGCGCCGTGATGATGCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000000000000000000000000000000000000000000000000000000000000
..............................GCCGTGATGATGCGCAAC----------AGCGAGTCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
.......................TGACAGCGCCGTGATGATGCGCAAC----------AGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................GTGAGTAGCTT----CGGG-------TTGG--------------------------CGTCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-TT----------C---GACTCG--T------AAAT-ATTAG....................................................................................2111.001000000000000000000000000000000000000000000000000000001000000000
............................................CAAC----------AGCGAGTCCAGACAGTCGGGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
...................................GATGATGCGCAAC----------AGCGAGTCCAGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000001
C---AAAGA--------------TGACAGCGCCGTGATGATGCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000001000
...........................................GCAAC----------AGCGAGTCCAGACAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
............................................CAAC----------AGCGAGTCCAGACAGTCGGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000001000
....................................ATGATGCGCAAC----------AGCGAGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
....AAAGA--------------TGACAGCGCCGTGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................GCCGTGATGATGCGCAAC----------AGCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...........................................GCAAC----------AGCGAGTCCAGACAGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
C---AAAGA--------------TGACAGCGCCGTGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................CACACACACACACACACATA....................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................CACACACACACACATATA..................................................................................................................................................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
C---AGAGA--------------TGACAGTGGCGTTCTAATGCGTAAC----------AGTGAATCCAGACAGTCGGGTAAGTAGTCCAA---GGG-------TTAT------------TCACCCACTGTAGTTAAC--CTTGTAG-----------TTAACTGCA----TTTCGCTA-TTGTGT--------------------------------------------------------------------------------TT--GTA-C-CACACACACACACACACACACACACAC------AACCACAACCACATATACCTCA-------------------------------TTGTAA---AC--------------------------------AACGTGTCCC--------------------------------------------------------------------------------------------------------------------------TTTCCAAAAACT----------C---GCC--GCGTATACATATAA-ATTAGATA----------------------ATCCGCCGCCATTGCCAACAACGATGCCGCCATTGGGCA----------------GCAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................AAC----------AGTGAATCCAGACAGTCGGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.003100002
........................GACAGTGGCGTTCTAATGCGTAAC----------AGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000
........A--------------TGACAGTGGCGTTCTAATGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..................................................................................................................................................................................................................................................................................................................................ATACCTCA-------------------------------TTGTAA---AC--------------------------------AACGT......................................................................................................................................................................................................................................................................2111.001100000
.................................GTTCTAATGCGTAAC----------AGTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.......GA--------------TGACAGTGGCGTTCTAATGCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..........................................................AGTGAATCCAGACAGTCGGGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
..............................GGCGTTCTAATGCGTAAC----------AGTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
......AGA--------------TGACAGTGGCGTTCTAATGCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
....................................CTAATGCGTAAC----------AGTGAATCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
..............................................................................................................................................................................................................................................................................TA-C-CACACACACACACACACAC.........................................................................................................................................................................................................................................................................................................................................................................................22200.051000010
droGri2
C---AAAGA--------------TGACAGCGCTGTTCTCATGCGCAGC----------AGCGAGTCCAGGCAGTCCGGTAAGTGGCCCAA-TCGTG-------TGGC--------------------------AGTCCCC----ACTCA-TTGTGTA---------GTCAGCTATATATTTGTGT--------------------------------------------------------------------------------TT--GTA-C-CACACACACACACACACACACATATACACACATACATACATATA-----------CACATACT------------------------TACTT---T--GATCACCCATTTGTAAA--------------AACGTGTACC--------------------------------------------------------------------------------------------------------------------------CCTCCAAAAAT-----------C---GAC--T--T------GTAT-ATTAGATA----------------------ATCCGCCGCCATTGCCCACAACGATGCCGCCCTTGGGCAGC---GCCAGTAGTCATCATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
T---TACTC--------------CCATGCAGTT-CATAG----------------------------------------------------------------------------------------------------A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCATAGA------------------------TCATT---T--GCGAAACAGTTTAAACG--------------AACGAGTGGC--------------------------------------------------------------CTTGGGTCCGCTTAGTGTATTCTCGAATACGGCCGATTT---------------------------------------------------------------------AAGGAGCTCC------------------GTTCTCAGCTATAGTCAACAGCCACACCA--------------------------GCCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
C---ATGTAGCCCCTACGATCTACGATAGCTATTCTC------------------------------------------AATATATATATACAAAC-------ACGT--------------------------ACACACA---------------------------TA------------------------------------------------------------------------------------------------------------------------------------TATATAGATATATATATA-----------TATATATGTATATATACAAAC-------AAATTGTAT---AACA--------------------------------CTTGACTTCCTCCAAGAACTTGAAACACCAATTTACCCAAGGCAACCTCTAAGCGACATAACCCAGGCGGCAAGGGGCCGCCTTCTGTCCCACCGAGT--GGCCA--TG---------------------------------------------------------------------CAGGAGTTGCGTCGCAAGCGCAGCTCGCTTCTGCAGCCATTGCCAGAG------------------------------------CAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAACTTGAAACACCAATTTACCCAAGG...............................................................................................................................................................................................................................2970.574400000
..............................................................................................................................................................................................................................................................................................................................................................C-------AAATTGTAT---AACA--------------------------------CTTGACT..................................................................................................................................................................................................................................................................2180.252200000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAACTTGAAACACCAATTTACCA...................................................................................................................................................................................................................................2570.141010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAACTTGAAACACCAATTTACCC...................................................................................................................................................................................................................................2570.141010000
.............................................................................................................................................................................................................................................................................................................................................................................AT---AACA--------------------------------CTTGACTTCCTCCAAGAAC......................................................................................................................................................................................................................................................2580.131010000
...................................................................................................................................................................................................................................................................................................................................................ATATATACAAAC-------AAATTGT..................................................................................................................................................................................................................................................................................................................1980.131001000
...............ACGATCTACGATAGCTATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1990.111001000
....................CTACGATAGCTATTCTC------------------------------------------AATATATAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2690.111010000
........AGCCCCTACGATCTACGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1990.111100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCACCGAGT--GGCCA--TG---------------------------------------------------------------------CAGGAGT................................................................................25200.102020000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGAGT--GGCCA--TG---------------------------------------------------------------------CAGGAGTTG..............................................................................23200.102020000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTCGCAAGCGCAGCTCGCTT.........................................................23200.102020000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCCCACCGAGT--GGCCA--TG---------------------------------------------------------------------CAGGAGT................................................................................29200.102200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCA--TG---------------------------------------------------------------------CAGGAGTTGCGTCGCAAG.....................................................................23200.051010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---------------------------------------------------------------------CAGGAGTTGCGTCGCAAGCGCAG................................................................25200.051000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--GGCCA--TG---------------------------------------------------------------------CAGGAGTTGCG............................................................................20200.051000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGAGT--GGCCA--TG---------------------------------------------------------------------CAGGAGTTGC.............................................................................25200.051000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTCGCAAGCGCAGCTCGCT..........................................................22200.051010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GGCCA--TG---------------------------------------------------------------------CAGGAGTTGCGTCGC........................................................................23200.051001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCCACCGAGT--GGCCA--TG---------------------------------------------------------------------CAGG...................................................................................24200.051010000
droAna3
C---G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAATT--------------------------------------------------------------------------------TT--TTGCC-AATGCAT-----------------------------------------------------------ACAGTACTCT-------ATGATATAT---GATA----------------------------------------------------------------------------------------------------------------------------------------------AACATA-------------TATTTAAAAAAAA----------AAAAACC--A--A------ATGC-AAA--------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
C---AACCA--------------GCAAACCACC-TGTAGCCACCAAACCACCACCAATCAACCAACCAACCAACCAAATCAGTAAACCAAACCACC-------CAAAACAAAACCCTTCTCACCC--------GTTCTTAATGTGA-----------TTTATT-CG----CTCATATCTCTCTGT--------------------------------------------------------------------------------TT--GTG------------------------------------------------------------TGT----------------------------GTGT---TT------CGCT-CTAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAACAAAAAAAAAAATA---AAA------------CAAAAASizeHit CountTotal NormTotal
No Reads
droKik1
CTTTAAGGA--------------TGACAGTGCGGTGCTGACACGCAAC----------AGCGAGGCCAGACAATCGGGTGAGTTTTCCCAAGGGAG-------TAGT--------------------------AAGT--A-----------------------------AGGCAGCCATTTGTGT--------------------------------------------------------------------------------CTCTCTGTCCCATACAC--------------------------CACCACCGCCACCTGC------------------TCCTCCTCC-------ACATTACTCCTCCTCA----------------------------------------------------------------------------------------------------------------------------------------------CTCACATTGTACAAAATTGTCCTCTTACAACG------------ATGCC--GC-T------GGGCTATTAGATA----------------------ATCCGCCGCCTTTACCCACGACAATGCCACCAGTGGGTGGC------------CACCAGSizeHit CountTotal NormTotal
No Reads
droFic1
C---AGGGA--------------CGACAGCACAGTGCTGACGCGCAAC----------AGCGAGGCCAGACAATCGGGTAAGTGCTCCAACCAGGGAACCAATGGGG--------------------------ATCCCCA---------------------------GT-CCCAGCCACCAGTGT--------------------------------------------------------------------------------CT--CTGTC-CACACAC-----------------------------------------------------------CCCGACCTCC-------ACATTACTC---C--A----------------------------------------------------------------------------------------------------------------------------------------------CTCACATTGTA-CAAATTGTCCTCCAACAACG----------CGATGTC--G--T------GTGG-TGTAGATA----------------------ATCCGCCGCCATTGCCAACGACGATGCCACCAGTGGGTGGT------------C---ACSizeHit CountTotal NormTotal
No Reads
droEle1
C---AAGGA--------------TGACAGCGCGGTGCTGACACGCAAC----------AGCGAGGCCAGACAATCGGGTGAGTACTCCTAAATGGG-------TGGG--------------------------ATGACCA---TGCCCATTTGTG-------------TCCCAAGCCATTTGTGT--------------------------------------------------------------------------------CT--CTGTC-CATACAC-----------------------------------------------------------CTCGACC----------------------------------------------------------------------------------------------------------------------------------------CAGTCAATCCAACTCCACATTCAACCAATCCACTCACATTGTA-CAAATTGTCCTCCAAAAACG----------CAATGCC--GTGT------GTGT-ATTAGAAA----------------------ATCCGCCGCCATTGCCAACGACGATGCCACCAGTGGGTGGC------------CAGCATSizeHit CountTotal NormTotal
No Reads
droRho1
C---AAGGA--------------TGACAGCGCGGTGCTGACACGCAAC----------AGCGAGGCCAGACAATCGGGTAAGTCTTCCTAAATGGG-------TGGT--------------------------AATCCCA--------------------------GTCCCCCAGCCATCTGTGT--------------------------------------------------------------------------------CT--CTGTC-CATACAC-----------------------------------------------------------CTCAACCTCCCCAACCAACATCAACC---C--A----------------------------------------------------------------------------------------------------------------------------------------------CTTACATTGTA-AAAATTGTCCTTCAACAACG----------CAATGCC--G--T------GTGT-ATTAGATA----------------------ATCCGCCGCCATTGCCAACGACGATGCCACCGGTGGGTGGC------------CAGCATSizeHit CountTotal NormTotal
No Reads
droBia1
C---AAGGA--------------TGACAACGCGGTGCTGGCACGCAAC----------AGCGAGGCCAGACAATCGGGTGAGTCCTTAGAACTGGG-------TAGT--------------------------TGCCATA---------------------------TCCCCTAGCCATTTGTGT--------------------------------------------------------------------------------CT--CTGTC-CATACAC-----------------------------------------------------------C---ACCTAC-------ATATTATTC---C--A----------------------------------------------------------------------------------------------------------------------------------------------CTCACATTGTA-CAAATTGTCCTCCAACAACGTGCCAA----CAATGCC--G--T------GTGT-ATTAGATA----------------------ATCCGCCGCCATTGCCAACGACGATGCCACCGGTGGGTGGC------------CAGCATSizeHit CountTotal NormTotal
No Reads
droTak1
G---GGGTG--------------TCATAGCTGTTAGCAGTTGTT------------------------------------TGTTTACTAAACAGAA-------CATC--------------------------ACACAAA---------------------------CCAACCAACCAA--------------------------------------CCACCCACAA--------------------------------------TC--ACGCC-CACACAC--------------------------ACCCACCTACAGATGTTACTCA------------------------------------A---TATA----------------------------------------------------------------------------------------------------------------------------------------------TATAAACTGTG--TATT--CTCTCT---------------------------------------A-TATATATA----------------------TTTCGATATCGTAGCC----------------------------------------CAASizeHit CountTotal NormTotal
No Reads
droEug1
C---AAGGA--------------TGACAGCGCGGTGCTGACACGCAAC----------AGCGAGGCCAGACAATCGGGTAAGTCCTCAAAACTAGG-------TAGT--------------------------AGTCCCT---------------------------TCCCCTAGCCATTTGTGT--------------------------------------------------------------------------------CT--CTGTC-CATACAC-----------------------------------------------------------AC---CCTTC-------ACATTATTC---C--A----------------------------------------------------------------------------------------------------------------------------------------------CTCACATTGTA-AAAATTGTCCTCCAACAACG----------CAATGCC--G--T------GTGT-AATAGATA----------------------ATCCGCCGCCATTGCCAACGACGATGCCACCAGTGGGTGGC------------CACCATSizeHit CountTotal NormTotal
No Reads
dm3
C---AAGGA--------------TGATAACGCGTTGTTGACGCGCAAC----------AGCGAGGCCAGACAATCGGGTAAGTTCTCCAAACTAGG-------TGGT--------------------------ATTCCCA---------------------------TTTCCGAGCTATTTGTGT--------------------------------------------------------------------------------CT--TTGTC-CATACAC-----------------------------------------------------------CTGCTCCTCC-------ACATTGTTT---CACA----------------------------------------------------------------------------------------------------------------------------------------------CTCACATTGTA--AAATTGTCCTCCAACAACG----------CAATGCC--G--T------ATGT-ATTAGATA----------------------ATCCGCCGCCATTGCCAACAACGATGCCACCGGTGGGTGGC------------CAGCATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................AGCGAGGCCAGACAATCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100
C---AAGGA--------------TGATAACGCGTTGTTGACGCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................T--------------------------------------------------------------------------------CT--TTGTC-CATACAC-----------------------------------------------------------CTGCTC....................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.........................................GCGCAAC----------AGCGAGGCCAGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATA----------------------ATCCGCCGCCATT..............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CAAC----------AGCGAGGCCAGACAATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA----------------------ATCCGCCGCCATTGCC...........................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................GATAACGCGTTGTTGACGCGCAAC----------AGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................TTGACGCGCAAC----------AGCGAGGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................T---CACA----------------------------------------------------------------------------------------------------------------------------------------------CTCACATTGTA--AAATT.........................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ATAACGCGTTGTTGACGCGCAAC----------AGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CAAC----------AGCGAGGCCAGACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................CCTCC-------ACATTGTTT---CACA----------------------------------------------------------------------------------------------------------------------------------------------CT.........................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGATGCCACCGGTGGGT.....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
........A--------------TGATAACGCGTTGTTGACGCGCAAC----------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................CAGACAATCGGGTAAGTTCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....AAGGA--------------TGATAACGCGTTGTTGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCAACAACG----------CAATGCC--........................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TACAC-----------------------------------------------------------CTGCTCCTCC-------ACATTG...................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GCGCAAC----------AGCGAGGCCAGACAATCGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................CGCAAC----------AGCGAGGCCAGACAATCGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA----------------------ATCCGCCGCCATTGCCAAC........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TGTTGACGCGCAAC----------AGCGAGGCCAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................CAAC----------AGCGAGGCCAGACAATCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
......................................GACGCGCAAC----------AGCGAGGCCAGACAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCCGCCATTGCCAACAACGATGCCACC............................3011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................C----------AGCGAGGCCAGACAATCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................TTGTTGACGCGCAAC----------AGCGAGGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................TGACGCGCAAC----------AGCGAGGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGATGCCACCGGTGGGT.....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................GCCAGACAATCGGGTAAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......GA--------------TGATAACGCGTTGTTGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................TATTTGTGT--------------------------------------------------------------------------------CT--TTGTC-CATAC.......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
....AAGGA--------------TGATAACGCGTTGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCC--G--T------ATGT-ATTAGATA----------------------ATCCGCC....................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TGACGCGCAAC----------AGCGAGGCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------CAATGCC--G--T------ATGT-ATTAG....................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGATAACGCGTTGTTGACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................TGTTGACGCGCAAC----------AGCGAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...................................GTTGACGCGCAAC----------AGCGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
...............................................................GGCCAGACAATCGGGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1880.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
droSim2
C---AAGGA--------------CGATAACGCGTTGTTGACGCGCAAC----------AGCGAGGCCAGGCAATCGGGTAAGTTCTCCAAACTAGG-------TGGT--------------------------ATTCCCA---------------------------TTTCCTAGCCATTTGTGT--------------------------------------------------------------------------------CT--TTGTC-CATACAC-----------------------------------------------------------CTACTCCTCC-------ACATTGTTT---CACA----------------------------------------------------------------------------------------------------------------------------------------------CTCACATTGTA--AAATTGTCCTCCAACAACG----------CAATGCC--G--T------ATGT-ATTAGATA----------------------ATCCGCCGCCATTGCCAACAACGATGCCACCAGTGGGTGGC------------CAGCATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................GCAAC----------AGCGAGGCCAGGCAATCGGGTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
C---AAGGA--------------CGATAACGCGTTGTTGACGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
C---AAGGA--------------CGATAACGCGTTGTTGAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000000000
....AAGGA--------------CGATAACGCGTTGTTGACGCGCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000000000010000
....AAGGA--------------CGATAACGCGTTGTTGACGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
..........................................CGCAAC----------AGCGAGGCCAGGCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
........................GATAACGCGTTGTTGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.....................................TGACGCGCAAC----------AGCGAGGCCAGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGATGCCACCAGTGGGT.....................2011.00100000000000100000
.......GA--------------CGATAACGCGTTGTTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
..........................................................................................................................................CA---------------------------TTTCCTAGCCATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1550.40200000000002000000
..........................................................................................................................................CA---------------------------TTTCCTAGCCATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15160.13200000000002000000
droSec2
T---AAGGA--------------CGATAACGCGTTGTTGACGCGCAAC----------AGCGAGGCCAGGCAATCGGGTAAGTTCTCCAAACTAGG-------TGGT--------------------------ATTCCCA---------------------------TTTCCTAGCTATTTGTGT--------------------------------------------------------------------------------CT--TTGTC-CATACAC-----------------------------------------------------------CTACTCCTCC-------ACATTGTTT---CACA----------------------------------------------------------------------------------------------------------------------------------------------CTCACATTGTA--AAATTGTCCTCCAACAACG----------CAATGCC--G--T------ATGT-ATTAGATA----------------------ATCCGCCGCCATTGCCAACAACGATGCCACCGGTGGGTGGC------------CAGCATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................AAC----------AGCGAGGCCAGGCAATCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030120
....AAGGA--------------CGATAACGCGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
...................................GTTGACGCGCAAC----------AGCGAGGCCAGGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
.....AGGA--------------CGATAACGCGTTGTTGACGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
......................................GACGCGCAAC----------AGCGAGGCCAGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
............................................CAAC----------AGCGAGGCCAGGCAATCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.....................................TGACGCGCAAC----------AGCGAGGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
droYak3
C---AAGGA--------------TGATAACGCGTTGTTGGCGCGCAAC----------AGCGAGGCCAGACAATCGGGTAAGTTCTCCAAACTGGG-------TGAA--------------------------ATTCCCA---------------------------TTTGCTAGCCATTTGTGT--------------------------------------------------------------------------------CT--CTGTC-CATACAC-----------------------------------------------------------CCTCTCCTTC-------ACATTGTTT---CACA----------------------------------------------------------------------------------------------------------------------------------------------CTCACATTGTA--AAATTGTCCTCCAACAACG----------CAATGCC--G--T------ATGT-ATTAGATA----------------------ATCCGCCGCCATTGCCAACAACGATGCCACCGGTGGGTGGC------------CAGCATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCATTGCCAACAACGATGCCACCGGTGGGT.....................3218.00800000000008
........A--------------TGATAACGCGTTGTTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1918.00811100050000
.......GA--------------TGATAACGCGTTGTTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.00401000030000
....AAGGA--------------TGATAACGCGTTGTTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00220000000000
.....................................TGGCGCGCAAC----------AGCGAGGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00202000000000
...........................AACGCGTTGTTGGCGCGCAAC----------AGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
....AAGGA--------------TGATAACGCGTTGTTGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
........A--------------TGATAACGCGTTGTTGGCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
............................................CAAC----------AGCGAGGCCAGACAATCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACGATGCCACCGGTGGGT.....................2311.00100000010000
......GGA--------------TGATAACGCGTTGTTGGCGCGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
...........................................GCAAC----------AGCGAGGCCAGACAATCGGGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
........................GATAACGCGTTGTTGGCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.........................................GCGCAAC----------AGCGAGGCCAGACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
C---AAGGA--------------TGATAACGCGTTGTTGGCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
.......GA--------------TGATAACGCGTTGTTGGCGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
......GGA--------------TGATAACGCGTTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
............................................CAAC----------AGCGAGGCCAGACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
.......GA--------------TGATAACGCGTTGTTGGCGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
..........................................CGCAAC----------AGCGAGGCCAGACAATCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
......................................GGCGCGCAAC----------AGCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
....AAGGA--------------TGATAACGCGTTGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
C---AAGGA--------------TGATAACGCGTTGTTGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
droEre2
C---AAGGA--------------TGATAACGCGTTGTTGACGCGCAAC----------AGCGAGGCCAGACAATCGGGTAAGTTCTCCAAACTGGG-------TGGT--------------------------ATTCCCA---------------------------TTTGCTAGCCATTTGTGT--------------------------------------------------------------------------------CT--CTGTC-CATACAC-----------------------------------------------------------CCTCTCCTCC-------ACATTGTTT---CACA----------------------------------------------------------------------------------------------------------------------------------------------CTCACATTGTA--AAATTGTCCTCCAACAACG----------CAATGCC--G--T------ATGT-ATTAGATA----------------------ATCCGCCGCCATTGCCAACGACGATGCCACCGGTGGGTGGC------------CAGCATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................GTTGACGCGCAAC----------AGCGAGGCCAGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001000
.....................................................................ACAATCGGGTAAGTTCTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
........A--------------TGATAACGCGTTGTTGACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.......GA--------------TGATAACGCGTTGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
....AAGGA--------------TGATAACGCGTTGTTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
...................................GTTGACGCGCAAC----------AGCGAGGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGATGCCACCGGTGGGT.....................1911.0010001000
...................................GTTGACGCGCAAC----------AGCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010

Generated: 05/18/2015 at 03:19 AM