ID:

dwi_2016

 Coordinate:

scf2_1100000004762:3177399-3177549 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.6 -4.4 -4.3

Flybase annnotation

CDS [Dwil\GK12479-cds]; exon [dwil_GLEANR_1278:2]; intron [Dwil\GK12479-in]

Repeatable elements

NameClassFamilyStrand
Gypsy-22_DWil-I-intLTRGypsy+
(TG)nSimple_repeatSimple_repeat+
mature
  1. scf2_1100000004511:233306-233326 +
  2. scf2_1100000004511:1539258-1539278 +
  3. scf2_1100000004511:8331063-8331083 +
  4. scf2_1100000004513:2961040-2961060 +
  5. scf2_1100000004514:3864480-3864500 +
  6. scf2_1100000004516:2605925-2605945 +
  7. scf2_1100000004516:3451959-3451979 +
  8. scf2_1100000004521:9652028-9652048 +
  9. scf2_1100000004590:278072-278092 +
  10. scf2_1100000004590:705833-705853 +
  11. scf2_1100000004762:1365282-1365302 +
  12. dwi_2016  scf2_1100000004762:3177450-3177470 +
  13. scf2_1100000004762:4435232-4435252 +
  14. scf2_1100000004768:2067779-2067799 +
  15. scf2_1100000004822:2449168-2449188 +
  16. scf2_1100000004943:8987398-8987418 +
  17. scf2_1100000004943:9942469-9942489 +
  18. scf2_1100000004909:3104993-3105013 +
  19. scf2_1100000004909:12033121-12033141 +
  20. scf2_1100000004963:4731315-4731335 +
star
  1. scf2_1100000013061:664-683 +
  2. scf2_1100000004511:3720592-3720611 -
  3. scf2_1100000004511:6498342-6498361 -
  4. scf2_1100000004511:7370183-7370202 +
  5. scf2_1100000004511:7710371-7710390 +
  6. scf2_1100000004511:8447851-8447870 -
  7. scf2_1100000004513:4033147-4033166 +
  8. scf2_1100000004521:1055866-1055885 -
  9. scf2_1100000004521:10460070-10460089 +
  10. scf2_1100000004585:5477769-5477788 +
  11. scf2_1100000004729:2263703-2263722 -
  12. dwi_2016  scf2_1100000004762:3177477-3177496 +
  13. scf2_1100000004768:582415-582434 -
  14. scf2_1100000004768:1190299-1190318 -
  15. scf2_1100000004943:6589213-6589232 -
  16. scf2_1100000004943:11861044-11861063 +
  17. scf2_1100000004902:11018291-11018310 +
  18. scf2_1100000004921:571959-571978 +
  19. scf2_1100000004921:2049939-2049958 -
  20. scf2_1100000004963:2010739-2010758 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCAATAAACCATCTTGTTCCCTGCCGTTGCTTCAGGTGTGGCCCAGTCAGGTATGTTCATATCAATTTATTTACATACATCCATATATTCATATATGTATGTGTGTGTGTGTGTGTGTCTTTGGGTGACTATATGTATGTGTGTGTGTGTGTGAAAGAACAACAAAACCCATACAGGAAGAAGAAAAAATATATACCTGCCAACAGTGTTTCAATTTCAGTTTTTAGTTTTTTGTCCAAATTTTTTTTGGT
*****************************************************************************************************.....(((((((((.(((.......))))))))))))..........******************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V119
head
 V117
male body		 V118
embryo
................TTCCCTGCCGATGCACCA......................................................................................................................................................................................................................... 18 3 20 0.15 3 1 1 1 0
.....................................................................................................TGTGTGTGTGTGTGTGTCTTT................................................................................................................................. 21 0 20 0.10 2 2 0 0 0
......................................................................................................................................................................ATGCATACAGGAAGAAGAA.................................................................. 19 2 12 0.08 1 0 1 0 0
...................................GTGTAGCGCAGTCCGGTA...................................................................................................................................................................................................... 18 3 18 0.06 1 1 0 0 0
...................CCAGCCGTTGCATCAGGCG..................................................................................................................................................................................................................... 19 3 18 0.06 1 1 0 0 0
...........................................................................................TATATGTATGTGTGTGTGTGTG.......................................................................................................................................... 22 0 20 0.05 1 0 1 0 0
............................................................................................................................................................................ACAGGAAGAAGAAAAAAA............................................................. 18 1 20 0.05 1 0 0 0 1
..........................................................................................ATATATGTATGTGTGTGT............................................................................................................................................... 18 0 20 0.05 1 0 0 0 1
................................................................................................................................CTATATGTATGTGTGTGTGT....................................................................................................... 20 0 20 0.05 1 0 0 1 0

Anti-sense strand reads

CGTTATTTGGTAGAACAAGGGACGGCAACGAAGTCCACACCGGGTCAGTCCATACAAGTATAGTTAAATAAATGTATGTAGGTATATAAGTATATACATACACACACACACACACACAGAAACCCACTGATATACATACACACACACACACACTTTCTTGTTGTTTTGGGTATGTCCTTCTTCTTTTTTATATATGGACGGTTGTCACAAAGTTAAAGTCAAAAATCAAAAAACAGGTTTAAAAAAAACCA
*******************************************************************************************************.....(((((((((.(((.......))))))))))))..........***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
........................GCCACGAGGTCCACTCCGGG............................................................................................................................................................................................................... 20 3 7 0.43 3 3 0
........................GCCACGAGGTCCACTCCGG................................................................................................................................................................................................................ 19 3 14 0.14 2 2 0
...................................................................................................................................................................................................................................AAAAAACAGGTTTACAAA...... 18 1 14 0.07 1 0 1
..................................................................................................................................................................................................................................AAAAAAACCGGTTTAAAAAAAA... 22 2 16 0.06 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004762:3177349-3177599 + dwi_2016 GCAATAAACCATCTTGTTCCCTGCCGTTGCTTCAG-GTGTGGCCCAGTCAGGTATGT--------------------------------TCA----TATCAATTTATTT--------------ACATAC-------ATCC----------------------ATATATTCATATA--TGTATGT----GTGTGTG--T-GTGTGTGT--CT-TTGGGT----G---ACT--ATATGT----------ATG--TGT----GT----G--T--GTGTGTG---------------------------AAA-------GAACA------------ACAAAACCCATACAGGAAGAAGAAAAAATATATACCTGCCA----ACAG----------------------------------------------------TGT---TTCAATTTCAG--TTTTTAGT-------TTTT-TGTCCA------------AATTTT--------------------TT---TTGGT
droVir3 scaffold_13049:13326128-13326350 + dvi_19786 GCAACAAGCCATCCTGTTCGCTGCCGCTGCTGCAG-GTGTGGCCCAGCCAGGTAGGCACAACCAACACACACAACTT------------CTG----CT---------------------------------------------------------------------------TT--TATGTGT----GTGTGTG--T-GCATCTGTCATTG-T--ACATGT-GTG--TGT----------------GTG--TGT----------GTGT--GTCTGTG---------------------------AACTGTG----A-------A--A--T-----------GGCAGCAA---------TAGTTCGG--------------------------------ATAAC----------------GAAAAATGATTTCTGT---TTCACGTTCTG--TTGTTTAT-------TTT---------------------TTTTT--------------------GT---TCAGC
droMoj3 scaffold_6680:14036493-14036721 - GCAACAAGCCATCCTGTTCGCTGCCGCTGTTGCAG-GTGTGGCCCAGCCAGGTAGGCACAACCAACACACACGCTCG---------------------------------------------------------------CTGTTGTTGCT--------------------------------------TCTATCT-------------GTT-T--GCGTGT-GTG--CAA----------------GTG--TGC----------GTGT--GTGTGTG---------------------------AGCTGTG----A------------------------------------------------AAATGTCTGT-T-------------------CGAATAAC----------------GAAAAATGATTTCTGT---TTCACATTT----------------GGTTTTTTTTTTCCAGTTTTTAA----ATTTT-----ATTTTGTTTTTATTTTG---TTTTT
droGri2 scaffold_15110:18752993-18753210 + GCAGCAAACCATCCTGTTCGCTGCCGCTGCTGCAG-GTGTGGCCCAGCCAGGTAGGCACAATCAACAGACACTTTCG---------------------------------------------------------------CAGTTGTCGCTTCTACC-----GCAGAACTGTGTG--TGTTTGT----GTGTGTG--T-GTGTGTGTGTTTG-T---------------------------------GTG--TGT----GT----G--T--GTGTGTC---------------------------GA--------------------------------------------------------------------------------------------ATATT----------------GAAAAATGATTTCTGTTGTTTCACGCTATG--TTT-T-TTCATTTATTT--------T------------TCTTTA--------------------TT---TTTTT
dp5 XR_group8:7178429-7178684 - dps_3349 ACAACAAGCCATCCTGTTCGCTGCCACTACTCCAG-GTGTGGCCCAGCCAGGTAGGCGTTATCT-------------CTTTTTATTTTG---CTG-TTT--G----------------------------------CTCTC----------------------TGTGTTCGTT-T--TGTGAGC----GAGTGTG--T-GTATGTCTCTTCG-T---------GC----------------------GTG--TGTGTGTGT----G--T--GTGCGTG--------GAAAATAA------------------------------AATA--CAACAAA---CATACAGGAA---------ACGTGCAGAAAGCAGCA-AAAGCTTTCAATTTTGGTA-----------------------------------------CA----T---------TT-T-TTAGTTGGTTTTTCTTCCCTAGTTTTGAA------------------------------A---TTAAA
droPer2 scaffold_36:127921-128184 + dpe_1516 ACAACAAGCCATCCTGTTCGCTGCCACTGCTCCAG-GTGTGGCCCAGCCAGGTAGGCGTTATCT-------------CTTTTTATTTT----CTG-TTT--G----------------------------------CTCTC----------------------TGTGTTCGTT-T--TGTGAGC----GATTTTG--T-GTATGTCTCTTCG-T---------GC------------------GTGTGTG--TGT----GTGTGTGTGTGTGTGCGTG--------AAAAATAA------------------------------TATA--CAACAAA---CATACAGGAA---------ACATGCAGAAAGCAGCA-AAAGCTTTCAATTTTGGTA-----------------------------------------CA----T---------TTTT-TTAGTTGGTTTTTCTTCCCTAGTTTTGAA------------------------------A---TTAAA
droAna3 scaffold_13047:1626955-1627097 + TATATATA----------------------------------------------------------------------------------------ATAATA---------------------------------------------------------------TATATATATA--TGTGTGT----GTGTGTG--T-GTGTGTGT--GT-GTGAGA-----GAA--TGTATGTATGTCCGTGTGTGGG------------------------TAAA--A---------------ATGTCCTTGTG--------------------------------------------------------------------------------------------------------------------------------T---TT--------GTATAT--AAT-------TTTT-TATTTTA--------TTT-TTTATGATAAA--------------CTTTTTTGCG
droBip1 scf7180000396709:520129-520245 - ATATGCAT-----------------------------------------------------------------------------------ATGCGTTTAT------ATATCT--------------GT-------A------------------------TCTATGTTTGTATATTTGTATT------TGTGTCTGT-GTACCT----GTG-T---------------------------TCAAGTGTG--TGT----GTGTGTG--T--GTGTGTA---------------------------AAT-----G--AC---------A--GAG-----------------CA---------------------------------------------------------------------------------------------------------------------------------------------TAA--------------------AC---AAAAC
droKik1 scf7180000298888:7477-7666 + ATCTTATGATGTCCCATTGCTTAACGTGATTCGTAACTATGC-----------------------------------------------ATG----TTTGTAT----GT--AT----------------GTATTTA---------------------TGTACATACATATGTTTGTA--TCTAT----GTATATTTATA---TGT--TCATA-C---------------------------GTATGTATG--TAC----AT-----------------------------------ATGTACATATG---------T------------------------------------------------AGGTACCGGT-T-------------------ATTTTGTT----------------GTCAGCCAGTCTTAAT---TTCGCAT-------------------------------T------------CTTTAA--------------------AT---TTATA
droFic1 scf7180000454073:2208729-2208853 - TGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTGTG------TGTGTGTGTGTCTTT-------------GT-ATGGGTGAGT-GTG--TAT----------------GTG--TGT----GT----G--T--GTGTGTA---------------------------AGT-----G--GG---------AGAAAA-----------------CTAA------------------------AAGC--GCAATTTAAGTG-----------------------------------------GA----A---------TTTTGTT-------ATTA-TTTTCA------------GCTTTT--------------------GT---TTAGA
droEle1 scf7180000491214:2513303-2513478 + GTGAGCC------------------------------------------AAGCAGATACA------------------------------------TCTAT------A----CAAATCAGC-AGCAATA-------AAG----------------------TATATGCGTGTCTT--AATGGGT----GTGTGTGTGT-GTGTGT----ATG-T---------GTG--TGT----------------GTG--TGT----GT----G--T--GTGTGTG---------------------------CAA-------GCGTA------------TCGAAGAAGATTATGCGATTATAGATACTTTGCCGAAGCCAGCC-G-------------------------------------------------------CAT---TTCA------------------------------------------------CTTTC--------------------GT---TT---
droRho1 scf7180000779914:714141-714330 - ATACAATTCCATTTTCATGTAT---------------------------------------------------------------------------------------------------------GC-------A------------------------------GTTGTCTG--TGTCTGT----GTGTGTG--T-GTGTGTTTACTTG-T---------GTGTGT------------------GTG--TGT----AT----G--T--TTGTGTGGGAGCAGCATTTATAA------------------------------GCCA--CAAAAGA---AATA-----A---------AAAGGACGAAGGCCCTA-AGACCGTTTCAAGTTGCTG-----------------------------------------AA----T---GTGTGCTT--CCT-------TTTT-TGCTTC------------ACTTTT--------------------GT---ATATG
droBia1 scf7180000302193:855935-856060 - T-----------CCTGCACACTGCAGTTGCTGC-G-GTGTGT-----------------------------------------------GTG----TTTCTGT----GT--GT----------------GTGTGTG---------------------TGTGTGTGTGTGTGTGTGTG--TGTGT----GTGTGTGTGTG---TGT--GTGTG-T---------------------------GTGTGTGTG--TGT----GT-----------------------------------GTGTGTGTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT---GTGTG
droTak1 scf7180000415704:939790-939882 - CGATTGAT---------------------------------------------------------------------------------------------------T----TAAATTGGCAAGTACTA-------AA------------------------------GTATGTG--TGTGTGT--GTGTGTGTGTGT-GTGTGT----GTG-T---------GTG--TGT----------------GTG--TGT----GT----G--T--GTGTGTG---------------------------GGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGG
droEug1 scf7180000409466:3471843-3471963 - ATTTTTTT-----------------------------------------------------------------------------------ACGGCCCT--G----------------------------------CATTG----------------------TGTGTCCGTATG--TGCGGGT----GTGTGTG--T-GTGTGTGT--GT-TTGGGA----G---CTT--ATGTAT----------GTA--TGA----GT----G--T--GCGTGTG--A----GTGCTTTATGCG------------------------------A--AAA-----------------GAAA---------------------------------------------------------------------------------------------------------------------------------------------A--------------------AT---AGATA
dm3 chr4:118974-119132 + TATATATATATATATATATATAAAAA-------------------------------------------------------------------------------------------------ATATAT-------ATAT----------------------ATATATATATATA--TATATAT----ATATATA--T-ATATATAT--AT-CAGAGC----A---TTT--ATATAT----------ATA--TAT----AT----A--T--ATATATA---------------------------TAT-------ATATA------------TATAA-----ATATATAA---------ATATATAAATAAATATA-TATA----------------------------------------------------------------------------------------------------------------TTT--------------------AT---AAATA
droSim2 2l:13217972-13218093 + TGCGG-----------CCCCC---------------------TTCAGTCACCTGTCC--------------------------------CTA----CATTGATATAAAT--------------GTATAC-------AA----------------------GTGTGTGTGTGTGTG--TGTGTGT----GTGTGTGTGT-G--TGT--GTGTG-T---------GT------------------GTGTGTG--TGT----GT----G--T--GTGTGTG---------------------------AGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTG
droSec2 scaffold_4:1676946-1677063 + CTG--------------------CTGCTGCTGCAG-CTGTGT-----------------------------------------------GTG----TGTGTGT----GT--GT----------------GTGTGTG---------------------TGTGTGTGTGTGTGTGTGTG--TGTGT----GTGTGTGTGTG---TGT--GTGTG-T---------------------------GTGTGTGTG--TGT----GT-----------------------------------GTGTGTGTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT---GTGTG
droYak3 X:6994626-6994780 - TTTATACC-----------------------------------------AATTTAATGCA------------------------------------ACTAT------A---------------------------------------------------------TATGCACGTG--TGTGTGT----GTGTGTT--T-GTGTGTGT--GT-GTGGGA-----------------------------GAG--TGT----GT----G--C--GAGTGTG---------------------------GAT-------GTTTGGACTAAAA--CATTTGA---CATGTA-GTC---------ACGTTCAGAAGGAAGAT-ACA------------------------------------------------AATTCAGA---TACAT------------------------------------------------------------------------AT---TCGCC
droEre2 scaffold_4845:11762897-11763106 + GTATGTAT-----------------------------------------------------------------------------------GTATGTAT--GT----ATGTAT--------------GT-------A--------------------TGTATGTATGTATGTATGTA--TGTAT----GTATGTATGTA---TGTATGTAT------------------------------GTACATATGTATGT-----------------------------------------ATGTATGTATGT-ATGTATGT-------A--C--T-----------TGCAAGAT---------CAATTGAA-----------------------------CAAATAACCGGGCAAATGTGTGCAAAAAATCGTATGGCGT---TACGCATCTTA--T-------------------TATTCTA--------AGT-CTTTGGTTCAACACCG---------CT---TTTGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
GCAATAAACCATCTTGTTCCCTGCCGTTGCTTCAG-GTGTGGCCCAGTCAGGTATGT--------------------------------TCA----TATCAATTTATTT--------------ACATAC-------ATCC----------------------ATATATTCATATA--TGTATGT----GTGTGTG--T-GTGTGTGT--CT-TTGGGT----G---ACT--ATATGT----------ATG--TGT----GT----G--T--GTGTGTG---------------------------AAA-------GAACA------------ACAAAACCCATACAGGAAGAAGAAAAAATATATACCTGCCA----ACAG----------------------------------------------------TGT---TTCAATTTCAG--TTTTTAGT-------TTTT-TGTCCA------------AATTTT--------------------TT---TTGGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................T----GTGTGTG--T-GTGTGTGT--CT-TT........................................................................................................................................................................................................................................................................................................................21200.10202000
...........................................................................................................................................................................TATA--TGTATGT----GTGTGTG--T-GTG....................................................................................................................................................................................................................................................................................................................................22200.05100001
.......................................................................................................................................................................................................................................................................................................................................................ACAGGAAGAAGAAAAAAA.....................................................................................................................................................................18200.05100010
..........................................................................................................................................................................ATATA--TGTATGT----GTGTGT............................................................................................................................................................................................................................................................................................................................................18200.05100010
...................................................................................................................................................................................................................................CT--ATATGT----------ATG--TGT----GT----G--T--GT.............................................................................................................................................................................................................................................................20200.05100100
droVir3
GCAACAAGCCATCCTGTTCGCTGCCGCTGCTGCAG-GTGTGGCCCAGCCAGGTAGGCACAACCAACACACACAACTT------------CTG----CT---------------------------------------------------------------------------TT--TATGTGT----GTGTGTG--T-GCATCTGTCATTG-T--ACATGT-GTG--TGT----------------GTG--TGT----------GTGT--GTCTGTG---------------------------AACTGTG----A-------A--A--T-----------GGCAGCAA---------TAGTTCGG--------------------------------ATAAC----------------GAAAAATGATTTCTGT---TTCACGTTCTG--TTGTTTAT-------TTT---------------------TTTTT--------------------GT---TCAGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................GTG--TGT----------GTGT--GTCTGTG---------------------------A............................................................................................................................................................................................................................18200.102000000000020000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TG-T--ACATGT-GTG--TGT----------------GTG--T.................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................TG-T--ACATGT-GTG--TGT----------------GTG--..................................................................................................................................................................................................................................................................................18200.051000000000000000000000001000000000000000000000000000000000000000
droMoj3
GCAACAAGCCATCCTGTTCGCTGCCGCTGTTGCAG-GTGTGGCCCAGCCAGGTAGGCACAACCAACACACACGCTCG---------------------------------------------------------------CTGTTGTTGCT--------------------------------------TCTATCT-------------GTT-T--GCGTGT-GTG--CAA----------------GTG--TGC----------GTGT--GTGTGTG---------------------------AGCTGTG----A------------------------------------------------AAATGTCTGT-T-------------------CGAATAAC----------------GAAAAATGATTTCTGT---TTCACATTT----------------GGTTTTTTTTTTCCAGTTTTTAA----ATTTT-----ATTTTGTTTTTATTTTG---TTTTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GCAGCAAACCATCCTGTTCGCTGCCGCTGCTGCAG-GTGTGGCCCAGCCAGGTAGGCACAATCAACAGACACTTTCG---------------------------------------------------------------CAGTTGTCGCTTCTACC-----GCAGAACTGTGTG--TGTTTGT----GTGTGTG--T-GTGTGTGTGTTTG-T---------------------------------GTG--TGT----GT----G--T--GTGTGTC---------------------------GA--------------------------------------------------------------------------------------------ATATT----------------GAAAAATGATTTCTGTTGTTTCACGCTATG--TTT-T-TTCATTTATTT--------T------------TCTTTA--------------------TT---TTTTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
ACAACAAGCCATCCTGTTCGCTGCCACTACTCCAG-GTGTGGCCCAGCCAGGTAGGCGTTATCT-------------CTTTTTATTTTG---CTG-TTT--G----------------------------------CTCTC----------------------TGTGTTCGTT-T--TGTGAGC----GAGTGTG--T-GTATGTCTCTTCG-T---------GC----------------------GTG--TGTGTGTGT----G--T--GTGCGTG--------GAAAATAA------------------------------AATA--CAACAAA---CATACAGGAA---------ACGTGCAGAAAGCAGCA-AAAGCTTTCAATTTTGGTA-----------------------------------------CA----T---------TT-T-TTAGTTGGTTTTTCTTCCCTAGTTTTGAA------------------------------A---TTAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................C----------------------GTG--TGTGTGTGT----G--T--GTGCGTG--------................................................................................................................................................................................................................................................22200.0510100000000
............................................................................................................................................................................................................................................................TGTGTGTGT----G--T--GTGCGTG--------G...............................................................................................................................................................................................................................................19200.0510000000010
droPer2
ACAACAAGCCATCCTGTTCGCTGCCACTGCTCCAG-GTGTGGCCCAGCCAGGTAGGCGTTATCT-------------CTTTTTATTTT----CTG-TTT--G----------------------------------CTCTC----------------------TGTGTTCGTT-T--TGTGAGC----GATTTTG--T-GTATGTCTCTTCG-T---------GC------------------GTGTGTG--TGT----GTGTGTGTGTGTGTGCGTG--------AAAAATAA------------------------------TATA--CAACAAA---CATACAGGAA---------ACATGCAGAAAGCAGCA-AAAGCTTTCAATTTTGGTA-----------------------------------------CA----T---------TTTT-TTAGTTGGTTTTTCTTCCCTAGTTTTGAA------------------------------A---TTAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................TCG-T---------GC------------------GTGTGTG--TGT----GTGTG......................................................................................................................................................................................................................................................................2160.171000001
..................................................................................................................................................................................................................CG-T---------GC------------------GTGTGTG--TGT----GTGTG......................................................................................................................................................................................................................................................................20200.153000003
.................................................................................................................................................................................................................TCG-T---------GC------------------GTGTGTG--TGT----GTG........................................................................................................................................................................................................................................................................19170.122000002
.................................................................................................................................................................................................................TCG-T---------GC------------------GTGTGTG--TGT----GTGT.......................................................................................................................................................................................................................................................................2090.111000001
..................................................................................................................................................................................................................CG-T---------GC------------------GTGTGTG--TGT----GTG........................................................................................................................................................................................................................................................................18200.102000002
.............................................................................................................................................................................................................................................................GT----GTGTGTGTGTGTGTGCGT.........................................................................................................................................................................................................................................................20200.051000001
droAna3
TATATATA----------------------------------------------------------------------------------------ATAATA---------------------------------------------------------------TATATATATA--TGTGTGT----GTGTGTG--T-GTGTGTGT--GT-GTGAGA-----GAA--TGTATGTATGTCCGTGTGTGGG------------------------TAAA--A---------------ATGTCCTTGTG--------------------------------------------------------------------------------------------------------------------------------T---TT--------GTATAT--AAT-------TTTT-TATTTTA--------TTT-TTTATGATAAA--------------CTTTTTTGCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................TATA--TGTGTGT----GTGTGTG--T-.......................................................................................................................................................................................................................................................................................................................................19200.102200000
...............................................................................................................................................................................................TGTG--T-GTGTGTGT--GT-GTGAGA-----GA.............................................................................................................................................................................................................................................................................................................23110.091000001
..............................................................................................................................................................................A--TGTGTGT----GTGTGTG--T-GTGTGTGT--GT-G.........................................................................................................................................................................................................................................................................................................................27200.051100000
....................................................................................................................................................................................GTGT----GTGTGTG--T-GTGTGTGT--GT-..........................................................................................................................................................................................................................................................................................................................22200.051000001
.......................................................................................................................................................................................T----GTGTGTG--T-GTGTGTGT--GT-GT........................................................................................................................................................................................................................................................................................................................21200.051100000
...................................................................................................................................................................................TGTGT----GTGTGTG--T-GTGTGTGT--GT-GTGA......................................................................................................................................................................................................................................................................................................................27200.051000010
...........................................................................................................................................................................TATA--TGTGTGT----GTGTGTG--T-GTGTG..................................................................................................................................................................................................................................................................................................................................24200.051100000
droBip1
ATATGCAT-----------------------------------------------------------------------------------ATGCGTTTAT------ATATCT--------------GT-------A------------------------TCTATGTTTGTATATTTGTATT------TGTGTCTGT-GTACCT----GTG-T---------------------------TCAAGTGTG--TGT----GTGTGTG--T--GTGTGTA---------------------------AAT-----G--AC---------A--GAG-----------------CA---------------------------------------------------------------------------------------------------------------------------------------------TAA--------------------AC---AAAACSizeHit CountTotal NormTotal
No Reads
droKik1
ATCTTATGATGTCCCATTGCTTAACGTGATTCGTAACTATGC-----------------------------------------------ATG----TTTGTAT----GT--AT----------------GTATTTA---------------------TGTACATACATATGTTTGTA--TCTAT----GTATATTTATA---TGT--TCATA-C---------------------------GTATGTATG--TAC----AT-----------------------------------ATGTACATATG---------T------------------------------------------------AGGTACCGGT-T-------------------ATTTTGTT----------------GTCAGCCAGTCTTAAT---TTCGCAT-------------------------------T------------CTTTAA--------------------AT---TTATASizeHit CountTotal NormTotal
No Reads
droFic1
TGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTGTG------TGTGTGTGTGTCTTT-------------GT-ATGGGTGAGT-GTG--TAT----------------GTG--TGT----GT----G--T--GTGTGTA---------------------------AGT-----G--GG---------AGAAAA-----------------CTAA------------------------AAGC--GCAATTTAAGTG-----------------------------------------GA----A---------TTTTGTT-------ATTA-TTTTCA------------GCTTTT--------------------GT---TTAGASizeHit CountTotal NormTotal
No Reads
droEle1
GTGAGCC------------------------------------------AAGCAGATACA------------------------------------TCTAT------A----CAAATCAGC-AGCAATA-------AAG----------------------TATATGCGTGTCTT--AATGGGT----GTGTGTGTGT-GTGTGT----ATG-T---------GTG--TGT----------------GTG--TGT----GT----G--T--GTGTGTG---------------------------CAA-------GCGTA------------TCGAAGAAGATTATGCGATTATAGATACTTTGCCGAAGCCAGCC-G-------------------------------------------------------CAT---TTCA------------------------------------------------CTTTC--------------------GT---TT---SizeHit CountTotal NormTotal
No Reads
droRho1
ATACAATTCCATTTTCATGTAT---------------------------------------------------------------------------------------------------------GC-------A------------------------------GTTGTCTG--TGTCTGT----GTGTGTG--T-GTGTGTTTACTTG-T---------GTGTGT------------------GTG--TGT----AT----G--T--TTGTGTGGGAGCAGCATTTATAA------------------------------GCCA--CAAAAGA---AATA-----A---------AAAGGACGAAGGCCCTA-AGACCGTTTCAAGTTGCTG-----------------------------------------AA----T---GTGTGCTT--CCT-------TTTT-TGCTTC------------ACTTTT--------------------GT---ATATGSizeHit CountTotal NormTotal
No Reads
droBia1
T-----------CCTGCACACTGCAGTTGCTGC-G-GTGTGT-----------------------------------------------GTG----TTTCTGT----GT--GT----------------GTGTGTG---------------------TGTGTGTGTGTGTGTGTGTG--TGTGT----GTGTGTGTGTG---TGT--GTGTG-T---------------------------GTGTGTGTG--TGT----GT-----------------------------------GTGTGTGTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT---GTGTGSizeHit CountTotal NormTotal
No Reads
droTak1
CGATTGAT---------------------------------------------------------------------------------------------------T----TAAATTGGCAAGTACTA-------AA------------------------------GTATGTG--TGTGTGT--GTGTGTGTGTGT-GTGTGT----GTG-T---------GTG--TGT----------------GTG--TGT----GT----G--T--GTGTGTG---------------------------GGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGGSizeHit CountTotal NormTotal
No Reads
droEug1
ATTTTTTT-----------------------------------------------------------------------------------ACGGCCCT--G----------------------------------CATTG----------------------TGTGTCCGTATG--TGCGGGT----GTGTGTG--T-GTGTGTGT--GT-TTGGGA----G---CTT--ATGTAT----------GTA--TGA----GT----G--T--GCGTGTG--A----GTGCTTTATGCG------------------------------A--AAA-----------------GAAA---------------------------------------------------------------------------------------------------------------------------------------------A--------------------AT---AGATASizeHit CountTotal NormTotal
No Reads
dm3
TATATATATATATATATATATAAAAA-------------------------------------------------------------------------------------------------ATATAT-------ATAT----------------------ATATATATATATA--TATATAT----ATATATA--T-ATATATAT--AT-CAGAGC----A---TTT--ATATAT----------ATA--TAT----AT----A--T--ATATATA---------------------------TAT-------ATATA------------TATAA-----ATATATAA---------ATATATAAATAAATATA-TATA----------------------------------------------------------------------------------------------------------------TTT--------------------AT---AAATASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................ATAT-------ATAT----------------------ATATATATATAT................................................................................................................................................................................................................................................................................................................................................................20200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TATA---------------------------TAT-------ATATA------------TATAA-----ATATATAA---------AT.....................................................................................................................................................................2750.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TATATA---------------------------TAT-------ATATA------------TATAA-----ATATATAA---------.......................................................................................................................................................................2760.1710000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................AT-------ATAT----------------------ATATATATATATA--.............................................................................................................................................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TATAT----------ATA--TAT----AT----A--T--ATATATA---------------------------.............................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TATAT-------ATAT----------------------ATATATATATA.................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................T--ATATATA---------------------------TAT-------ATATA------------TATAA-----........................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................TT--ATATAT----------ATA--TAT----AT----A--T--ATATA..........................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................TTT--ATATAT----------ATA--TAT----AT----A--T--ATA............................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................C----A---TTT--ATATAT----------ATA--TAT----AT----A--T--ATATATA---------------------------.............................................................................................................................................................................................................................28120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ATATATATATATATATAAAAA-------------------------------------------------------------------------------------------------A..................................................................................................................................................................................................................................................................................................................................................................................................................22140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TATATAAATAAATATA-TAT..................................................................................................................................................19160.0610000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................ATATATA--T-ATATATAT--AT-C.........................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................ATATAT----------ATA--TAT----AT----A--T--ATATATA---------------------------T............................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................C----A---TTT--ATATAT----------ATA--TAT----AT----A--T--ATA............................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................TAT----------ATA--TAT----AT----A--T--ATATATA---------------------------TAT-------ATA................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................AT----ATATATA--T-ATATATAT--AT-C.........................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................TATATATATATA--TATATA.......................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TATA---------------------------TAT-------ATATA------------TATAA-----ATA.....................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................T----AT----A--T--ATATATA---------------------------TAT-------ATATA------------TATAA-----ATATA...................................................................................................................................................................................30200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...ATATATATATATATATATAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................AT----AT----A--T--ATATATA---------------------------TAT-------ATATA------------TA................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................TATA--TATATAT----ATATATA--T-.......................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................ATA--TAT----AT----A--T--ATATATA---------------------------TAT-------ATA................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AAA-------------------------------------------------------------------------------------------------ATATAT-------ATAT----------------------ATATATATATATA--TATA.........................................................................................................................................................................................................................................................................................................................................................30200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TAT----ATATATA--T-ATATATAT--AT-CA........................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................T--ATATATA---------------------------TAT-------ATATA------------TATAA-----A.......................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TAT----AT----A--T--ATATATA---------------------------TAT-------ATATA------------TATAA-----A.......................................................................................................................................................................................28200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................AT----A--T--ATATATA---------------------------TAT-------ATATA------------TAT...............................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ATATATATATATATATAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................TATATA--TATATAT----ATATATA--T-ATAT...................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................ATATAT----------ATA--TAT----AT----A--T--ATATATA---------------------------.............................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TGCGG-----------CCCCC---------------------TTCAGTCACCTGTCC--------------------------------CTA----CATTGATATAAAT--------------GTATAC-------AA----------------------GTGTGTGTGTGTGTG--TGTGTGT----GTGTGTGTGT-G--TGT--GTGTG-T---------GT------------------GTGTGTG--TGT----GT----G--T--GTGTGTG---------------------------AGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................TGTGTGTGTGTGTG--TGTGTGT----GTG...............................................................................................................................................................................................................................................................................................................................................24200.05100000000001000000
.........................................................................................................................................A----------------------GTGTGTGTGTGTGTG--TG...........................................................................................................................................................................................................................................................................................................................................................18200.05100000000001000000
............................................................................................................................................................................................................................................................TGT----GT----G--T--GTGTGTG---------------------------AGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G....18200.05110000000000000000
droSec2
CTG--------------------CTGCTGCTGCAG-CTGTGT-----------------------------------------------GTG----TGTGTGT----GT--GT----------------GTGTGTG---------------------TGTGTGTGTGTGTGTGTGTG--TGTGT----GTGTGTGTGTG---TGT--GTGTG-T---------------------------GTGTGTGTG--TGT----GT-----------------------------------GTGTGTGTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT---GTGTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................................................GTGT----GT--GT----------------GTGTGTG---------------------TGTGTGTG.........................................................................................................................................................................................................................................................................................................................................................................23200.2040004
.................................................................................................................................................................................................................................................GTGTGTGTG--TGT----GT-----------------------------------GTGTGTGTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G.........25200.1530102
...................................................................................................................................................................................................................................................GTGTGTG--TGT----GT-----------------------------------GTGTGTGTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT---G....25200.1530102
...................................................................................................................................................................................................................G-T---------------------------GTGTGTGTG--TGT----GT-----------------------------------GTGTGTGTG.............................................................................................................................................................................................................................25200.1530102
.....................................................................................................................................................................................................................................................GTGTG--TGT----GT-----------------------------------GTGTGTGTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT---GTG..25200.1530102
....................................................................................................................................TGTG---------------------TGTGTGTGTGTGTGTGTG...............................................................................................................................................................................................................................................................................................................................................................22200.1530300
.........................................T-----------------------------------------------GTG----TGTGTGT----GT--GT----------------GTGTGTG---------------------TGT..............................................................................................................................................................................................................................................................................................................................................................................25200.1530300
......................................................................................................................................TG---------------------TGTGTGTGTGTGTGTGTGTG--...........................................................................................................................................................................................................................................................................................................................................................22200.1530300
.................................................................................................................................................................TGTGTGTGTGTGTGTG--TGTGT----GTG...............................................................................................................................................................................................................................................................................................................................................24200.1530003
...............................................................................................................................................................TGTGTGTGTGTGTGTGTG--TGTGT----G.................................................................................................................................................................................................................................................................................................................................................24200.1530003
.......................................................................................................................................................................TGTGTGTGTG--TGTGT----GTGTGTGTG.........................................................................................................................................................................................................................................................................................................................................24200.1530003
...................................................................................................................................................................TGTGTGTGTGTGTG--TGTGT----GTGTG.............................................................................................................................................................................................................................................................................................................................................24200.1530003
.........................................................................................................................................................................TGTGTGTG--TGTGT----GTGTGTGTGTG---....................................................................................................................................................................................................................................................................................................................................24200.1530003
.....................................................................................................................................................................TGTGTGTGTGTG--TGTGT----GTGTGTG...........................................................................................................................................................................................................................................................................................................................................24200.1530003
.......................................................................................................................................................................................................................................................GTG--TGT----GT-----------------------------------GTGTGTGTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT---GTGTG25200.1530102
.........................................T-----------------------------------------------GTG----TGTGTGT----GT--GT----------------GTGTGTG---------------------TG...............................................................................................................................................................................................................................................................................................................................................................................24200.1530300
.........................................T-----------------------------------------------GTG----TGTGTGT----GT--GT----------------GTGTGTG---------------------TGTG.............................................................................................................................................................................................................................................................................................................................................................................26200.1530003
.......................................................................................................................................G---------------------TGTGTGTGTGTGTGTGTGTG--TGTGT----..................................................................................................................................................................................................................................................................................................................................................26200.1020200
..............................................................................................................................................................GTGTGTGTGTGTGTGTGTG--TGTGT----GT................................................................................................................................................................................................................................................................................................................................................26200.1020200
........................................................................................................................................................................GTGTGTGTG--TGTGT----GTGTGTGT..........................................................................................................................................................................................................................................................................................................................................22200.1020200
..............................................................................................................................................................................GTG--TGTGT----GTGTGTGTGTG---TGT--...............................................................................................................................................................................................................................................................................................................................22200.1020200
................................................................................................................................................................GTGTGTGTGTGTGTGTG--TGTGT----GTGT..............................................................................................................................................................................................................................................................................................................................................26200.1020200
....................................................................................................................................................................................................GTG---TGT--GTGTG-T---------------------------GTGTGTGTG--TGT----G..........................................................................................................................................................................................................................................................................25200.1020002
................................................................................................................................................................................G--TGTGT----GTGTGTGTGTG---TGT--GT.............................................................................................................................................................................................................................................................................................................................22200.1020200
................................................................................................................................................................................................................TGTG-T---------------------------GTGTGTGTG--TGT----GT-----------------------------------......................................................................................................................................................................................................................................19200.1020002
...............................................................................................................................................................................................................GTGTG-T---------------------------GTGTGTGTG--TGT----GT-----------------------------------GTGTG.................................................................................................................................................................................................................................25200.1020002
..................................................................................................................................................................GTGTGTGTGTGTGTG--TGTGT----GTGTGT............................................................................................................................................................................................................................................................................................................................................26200.1020200
...................................................................................................................................................................................................TGTG---TGT--GTGTG-T---------------------------GTGTGT.......................................................................................................................................................................................................................................................................................19200.1020002
.................................................................................................................................................................................................TGTGTG---TGT--GTGTG-T---------------------------GTGT.........................................................................................................................................................................................................................................................................................19200.1020002
..................................................................................................................................................................................................................TG-T---------------------------GTGTGTGTG--TGT----GT-----------------------------------GT....................................................................................................................................................................................................................................19200.1020002
..........................................................................................................................................................................................................TGT--GTGTG-T---------------------------GTGTGTGTG--T.................................................................................................................................................................................................................................................................................19200.1020002
............................................................................................................................................................................................................T--GTGTG-T---------------------------GTGTGTGTG--TGT----...........................................................................................................................................................................................................................................................................19200.1020002
..........................................................................................................................................................................GTGTGTG--TGTGT----GTGTGTGTGT........................................................................................................................................................................................................................................................................................................................................22200.1020200
...............................................................................................................................................................................................TGTGTGTG---TGT--GTGTG-T---------------------------GT...........................................................................................................................................................................................................................................................................................19200.1020002
.................................................................................................................................................................................................................GTG-T---------------------------GTGTGTGTG--TGT----GT-----------------------------------GTGTGTG...............................................................................................................................................................................................................................25200.1020002
......................................................................................................................................................................................................G---TGT--GTGTG-T---------------------------GTGTGTGTG--TGT----GT-----------------------------------G.....................................................................................................................................................................................................................................25200.1020002
....................................................................................................................................................................................GTGT----GTGTGTGTGTG---TGT--GTGT...........................................................................................................................................................................................................................................................................................................................22200.1020200
.....................................................................................................................................................................................................TG---TGT--GTGTG-T---------------------------GTGTGTGT.....................................................................................................................................................................................................................................................................................19200.1020002
......................................................................................................................................................................................GT----GTGTGTGTGTG---TGT--GTGTG-T---------------------------.............................................................................................................................................................................................................................................................................................22200.1020200
.....................................................................................................................................GTG---------------------TGTGTGTGTGTGTGTGTGTG--TGT........................................................................................................................................................................................................................................................................................................................................................26200.1020200
............................................................................................................................................................................GTGTG--TGTGT----GTGTGTGTGTG---T...................................................................................................................................................................................................................................................................................................................................22200.1020200
...........................................................................................................................................................................................................GT--GTGTG-T---------------------------GTGTGTGTG--TGT----GT-----------------------------------GTG...................................................................................................................................................................................................................................25200.1020002
..................................................................................................................................TGTGTG---------------------TGTGTGTGTGTGTGTGTGTG--T..........................................................................................................................................................................................................................................................................................................................................................27200.0510100
....................................................................................................................................TGTG---------------------TGTGTGTGTGTGTGTGTGTG--TGT........................................................................................................................................................................................................................................................................................................................................................27200.0510100
................................................................................................................T----------------GTGTGTG---------------------TGTGTGTGTGTGTGTGTGT..............................................................................................................................................................................................................................................................................................................................................................27200.0510100
droYak3
TTTATACC-----------------------------------------AATTTAATGCA------------------------------------ACTAT------A---------------------------------------------------------TATGCACGTG--TGTGTGT----GTGTGTT--T-GTGTGTGT--GT-GTGGGA-----------------------------GAG--TGT----GT----G--C--GAGTGTG---------------------------GAT-------GTTTGGACTAAAA--CATTTGA---CATGTA-GTC---------ACGTTCAGAAGGAAGAT-ACA------------------------------------------------AATTCAGA---TACAT------------------------------------------------------------------------AT---TCGCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
GTATGTAT-----------------------------------------------------------------------------------GTATGTAT--GT----ATGTAT--------------GT-------A--------------------TGTATGTATGTATGTATGTA--TGTAT----GTATGTATGTA---TGTATGTAT------------------------------GTACATATGTATGT-----------------------------------------ATGTATGTATGT-ATGTATGT-------A--C--T-----------TGCAAGAT---------CAATTGAA-----------------------------CAAATAACCGGGCAAATGTGTGCAAAAAATCGTATGGCGT---TACGCATCTTA--T-------------------TATTCTA--------AGT-CTTTGGTTCAACACCG---------CT---TTTGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................TGTATGTA---TGTATGTAT------------------------------GTAC.........................................................................................................................................................................................................................................................................................21200.1022000000
..........................................................................................................................................................................GTATGTA--TGTAT----GTATGTATGTA---TG..................................................................................................................................................................................................................................................................................................................................25200.1020000002

Generated: 05/18/2015 at 03:14 AM