ID:

dwi_1990

 Coordinate:

scf2_1100000004762:1848576-1848726 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.5 -15.2

Flybase annnotation

CDS [Dwil\GK10672-cds]; exon [dwil_GLEANR_1088:2]; intron [Dwil\GK10672-in]

No Repeatable elements found

mature
  1. scf2_1100000012869:2-26 -
  2. scf2_1100000014261:664-688 -
  3. scf2_1100000011861:390-414 -
  4. scf2_1100000004406:4243-4267 -
  5. scf2_1100000004595:262064-262088 -
  6. scf2_1100000004691:41117-41141 -
  7. scf2_1100000004762:890779-890803 -
  8. dwi_1990  scf2_1100000004762:1848660-1848684 -
  9. scf2_1100000004839:36969-36993 -
  10. scf2_1100000004939:30050-30074 -
  11. scf2_1100000004943:1631698-1631722 -
  12. scf2_1100000004943:7687623-7687647 -
  13. scf2_1100000004943:9535450-9535474 -
  14. scf2_1100000004943:10416684-10416708 -
  15. scf2_1100000004909:1324420-1324444 -
  16. scf2_1100000004949:814752-814776 -
  17. scf2_1100000004949:1646402-1646426 -
  18. scf2_1100000004963:1098654-1098678 -
  19. scf2_1100000010147:1216-1240 -
  20. scf2_1100000000360:3128-3152 -
  21. scf2_1100000002935:6711-6735 +
  22. scf2_1100000001495:1983-2007 +
  23. scf2_1100000003314:4008-4032 +
  24. scf2_1100000011148:692-716 +
  25. scf2_1100000002121:3722-3746 +
  26. scf2_1100000006288:1173-1197 +
  27. scf2_1100000000833:1919-1943 +
  28. scf2_1100000004585:6664017-6664041 +
  29. scf2_1100000004585:7713540-7713564 +
  30. scf2_1100000004585:8874379-8874403 +
  31. scf2_1100000004762:4376499-4376523 +
  32. scf2_1100000004821:30789-30813 +
  33. scf2_1100000004843:12382-12406 +
  34. scf2_1100000004850:4473-4497 +
  35. scf2_1100000004943:954904-954928 +
  36. scf2_1100000004909:921629-921653 +
  37. scf2_1100000004958:1023052-1023076 +
  38. scf2_1100000004963:529886-529910 +
  39. scf2_1100000004968:75975-75999 +
  40. scf2_1100000000166:34-58 +
star
  1. scf2_1100000001634:2488-2514 -
  2. scf2_1100000001718:1676-1702 -
  3. scf2_1100000005856:962-988 -
  4. scf2_1100000012869:31-57 -
  5. scf2_1100000014261:693-719 -
  6. scf2_1100000011861:419-445 -
  7. scf2_1100000004515:555092-555118 -
  8. scf2_1100000004551:417-443 -
  9. scf2_1100000004585:6350342-6350368 -
  10. dwi_1990  scf2_1100000004762:1848689-1848715 -
  11. scf2_1100000004837:879806-879832 -
  12. scf2_1100000004839:36998-37024 -
  13. scf2_1100000004873:32702-32728 -
  14. scf2_1100000004902:10482710-10482736 -
  15. scf2_1100000004909:3013572-3013598 -
  16. scf2_1100000004909:11040438-11040464 -
  17. scf2_1100000004928:176381-176407 -
  18. scf2_1100000004929:79527-79553 -
  19. scf2_1100000004954:5127382-5127408 -
  20. scf2_1100000004963:2563733-2563759 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTTTAGCTTAAACGTTTTTCCACTTTTGATGGCTATAGGTAAGGAAAGGGTTACCAAAAATGTTGCAAGGGTATACAAACTTTGACGCGGTCGAAGTTAGCCCCGGCCCTCTGGTTTTTTGTTTTGTCTGGTTGTGTTTCAAATGAGTTTATGTGTTTTGGCTAACTGTTTTCTTTTTGTTCTGTTTGTTTTTGCTGCAGCTGGTTTCGCCTGAGAAACGCCTGGAGAGATCTCATCCCACATTCACGGA
*************************************************************....((..((((.....(((((((((...))))))))).))))..)).........************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V117
male body		 V118
embryo
 M045
female body
 V119
head
................................................................................................................................................................................................................CGCCTGAGAAACGCCTGGAGA...................... 21 0 1 4.00 4 3 0 1 0
.......................................................................................................................................................................................................................GAAACGCCTGGAGAGATCTC................ 20 0 1 3.00 3 1 2 0 0
................................................................................................................................................................................................................CGCCTGAGAAACGCCTGGAGAG..................... 22 0 1 2.00 2 2 0 0 0
.........................................................................................................................................................................................................................AACGCCTGGAGAGATCTCATCC............ 22 0 1 2.00 2 0 2 0 0
.................................................................................................................................................................................................................CCCTGAGAAACGCCTGGAGAGATC.................. 24 1 1 2.00 2 0 0 2 0
...............................................................................................................................................................................................................TCGCCTGAGAAACGCCTGGAGAGATCTC................ 28 0 1 1.00 1 1 0 0 0
...........................................................................................................................................................................................................................CGCCTGGAGAGATCTCATCC............ 20 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................................................GAAACGCCTGGAGAGATCTCATCC............ 24 0 1 1.00 1 1 0 0 0
......................................................................................................................................................................................................................AGAAACGCCTGGAGAGATCT................. 20 0 1 1.00 1 1 0 0 0
...........................................................................................................................................................................................................................CGCCTGGAGAGATCTCATCCCA.......... 22 0 1 1.00 1 1 0 0 0
......................................................................................................................................................................................................................AGAAACGCCTGGAGAGATCTCAT.............. 23 0 1 1.00 1 1 0 0 0
...................................................................................................................................................................................................................CTGAGAAACGCCTGGAGA...................... 18 0 1 1.00 1 0 1 0 0
..................................................................................................................................................................................................................CCTGAGAAACGCCTGGAGAG..................... 20 0 1 1.00 1 0 0 1 0
..........................................................................................................................................................................................................................ACGCCTGGAGAGATCTCAT.............. 19 0 1 1.00 1 0 1 0 0
.................................................................................................................................................................................................................GCCTGAGAAACGCCTGGAGAGATCT................. 25 0 1 1.00 1 0 1 0 0
.........................................................................................................................................................................................................................AACGCCTGGAGAGATCTCATCCCACATT...... 28 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................................................................TCGCCTGTGAAACGCCTGGAGAGATCT................. 27 1 1 1.00 1 1 0 0 0
..................................................................................................................................................................................................................................AGAGATCTCATCCCACATT...... 19 0 1 1.00 1 0 1 0 0
.....................................................................................................................................................................................................................GAGAAACGCCTGGAGAGATCT................. 21 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................................ACGCCTGGAGAGATCTCATCCCAC......... 24 0 1 1.00 1 0 0 1 0
...............................................................................................................................................................................................................TCGCCTGAGAAACGCCTGGA........................ 20 0 1 1.00 1 0 0 1 0
.........................................................................................................................................................................................................................AACTCCTGGAGAGATCTCATC............. 21 1 1 1.00 1 1 0 0 0
.........................................................................................................................................................................................................................AACGCCTGGAGAGATCTCAT.............. 20 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................................................GAAACGCCTGGAGAGATCT................. 19 0 1 1.00 1 1 0 0 0
........................................................................................................................................................................................................................AAACGCCTGGAGAGATCTC................ 19 0 1 1.00 1 0 1 0 0
.........................................................................................................................................................................................................................AACGCCTGGAGAGATCTCATCCCAC......... 25 0 1 1.00 1 0 0 1 0
..............................................................................................................................................................................................................TTCGCCTGAGAAACGCCTG.......................... 19 0 1 1.00 1 1 0 0 0
.........................................................................................................................................................................................................................AACGCCTGGAGAGATCTC................ 18 0 1 1.00 1 0 1 0 0
............................................................................................................................................................................................................................GCCTGGAGAGATCTCATCC............ 19 0 1 1.00 1 0 1 0 0
...................................................................................................................................................................................................................CTGAGAAACGCCTGGAGAGATCT................. 23 0 1 1.00 1 1 0 0 0
...........................TGATGGCTATAGGTAAGGAAAGGG........................................................................................................................................................................................................ 24 0 7 0.29 2 0 2 0 0
............................................................................................CGAAGTTAGCCCCGGCCCTCTGGTT...................................................................................................................................... 25 0 20 0.25 5 0 0 5 0
............................GATGGCTATAGGTAAGGAAAGGGTTAC.................................................................................................................................................................................................... 27 0 6 0.17 1 1 0 0 0
..........................TTGATGGCTATAGGTAAGGGAAGGG........................................................................................................................................................................................................ 25 1 11 0.09 1 0 1 0 0
.TTTTAGCTTAAACGTTTTTCCACTT................................................................................................................................................................................................................................. 25 0 20 0.05 1 0 0 1 0
.............................................................TGTTGCAAGGGTATACAAACTTTGACG................................................................................................................................................................... 27 0 20 0.05 1 0 0 1 0
.........................TTTGATGGCTACAGGTAAGGAAAGG......................................................................................................................................................................................................... 25 1 20 0.05 1 0 1 0 0
........................TTTTGATGGCTATAGGTAAGGA............................................................................................................................................................................................................. 22 0 20 0.05 1 0 0 0 1
....TAGCTTAAACGTTTTTCCACTTTTGA............................................................................................................................................................................................................................. 26 0 20 0.05 1 0 1 0 0
................................GCTATAGGTAAGCAGAGGGC....................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 1 0

Anti-sense strand reads

AAAAATCGAATTTGCAAAAAGGTGAAAACTACCGATATCCATTCCTTTCCCAATGGTTTTTACAACGTTCCCATATGTTTGAAACTGCGCCAGCTTCAATCGGGGCCGGGAGACCAAAAAACAAAACAGACCAACACAAAGTTTACTCAAATACACAAAACCGATTGACAAAAGAAAAACAAGACAAACAAAAACGACGTCGACCAAAGCGGACTCTTTGCGGACCTCTCTAGAGTAGGGTGTAAGTGCCT
**************************************************************************************************************************************....((..((((.....(((((((((...))))))))).))))..)).........************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
......................................................GGTTTTTACAACGTTCCCATATGTTT........................................................................................................................................................................... 26 0 20 0.10 2 2 0 0
.....................................................................................................GGGGCCGGGAGACCAAAAAA.................................................................................................................................. 20 0 20 0.05 1 1 0 0
...................................................................................ACTGCGCCAGCTTCAATCGGGG.................................................................................................................................................. 22 0 20 0.05 1 1 0 0
.............................................................ACAACGTTCCCATATGTTTGAAACTGCG.................................................................................................................................................................. 28 0 20 0.05 1 1 0 0
.....................................................TGGTTTTTACAACGTTCCCAT................................................................................................................................................................................. 21 0 20 0.05 1 1 0 0
....................................................................................CTGCGCCAGCTTCAATCGGGG.................................................................................................................................................. 21 0 20 0.05 1 0 1 0
..............................................................................................TTCAATCGGGGCCGGGAGAC......................................................................................................................................... 20 0 20 0.05 1 0 0 1
....................GGTGAAAACTACCGATATCCATTCCT............................................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0
.............................................................................................................................................................................GAAAAAGAAGACAAACAA............................................................ 18 1 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004762:1848526-1848776 - dwi_1990 TTTTTAGCTTA------AACGTTTT-------------------------TCCACT--------------TTTGATGGCT---------ATAGGTAAGGAAA-----GGGTTACCAAA------------------------------------------------------------------------------------------------------------AA-TGTTGC-AAGGGTATACAAACTTTGACG-CGG-TCGAAGTTAGCC-CCGGC------------------------CCTCTGGTTTTT---------TGTTTTGTCT----GGTTGTGTTTCAAATGAGTTTATGTGTTTTGGCTAACTGT--------------------------------------------------------------TTTCTTT---TTGTT--------------------------------CTGTTT------------------------------------------------------------------------------------GTTT------------------------------T-----------TGCTG--------------CAGCT--------------------------------------------------------------------GGTTTCGCCTGA-GA-A----------------------ACGC--------C-TGGAG---AGATCTCATCCCACATTCACGGA
droVir3 scaffold_28:27-279 - TTTACTATTTTC---------------------------C---------G---------------------------------------------------------------------------------------------------------------------GTACTTCTTAGATAGAGGCAAAGCACTATGAGCATTAT-------GAAAAGG-----TAGG-GTCTGC-AGGGGTATTAGATCTTTGGCG-T-G-CCGAAGATAGCCCTT--C------------------------TTTCTCGTTTTT----------------TTT-------------ACAATTC---------------------------AATTT-------------------------------------------------------------------------ACTGCATATG---------------GCAA-----G----------------------------TCTTAAACAA-TT----------------------------------------------GTTTTTTTTTTTTTTTTATA----T------CCT--------TGCAGAGGGTATTATAATTT---T--------------------------------------------------------------------GTCGTGGAATGG-GT-A------------------ACGCATAG--------A-AGGAG---ACATC---TCCGAC---CCCATA
droMoj3 scaffold_4127:3031-3152 + CTCTCTCCTTTTG------CT---------------TTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----------------TCT----GTTTGTGTCTCGCATATGTTTA--------------------------------------CCTTGAATA---------------------------------CG--------------------------------------------------------------------------------TCCTTGAAGA-TTTGTCTTATTTTCGTTTTATATTTTGTTTATAGCC----------GT------------------------------T-----------TGCTG--------------TTGTT------G------------------------------------------------------------------------------------------------------------------------------------------T-TGTTG
droGri2 scaffold_15110:15840431-15840654 + AAACGCT----------------CA-------------------------TCCGCTGAGCAGTCAGTGAATTTGCTGGCTGCATCCATCCTGGGCAAGCGCA-----GAATTACTCGCAACC-----------------TTCCAAAAACTC----------------ACAACTCTCG-----------------------------------------------------------------------------TT-CTG-GTTGAAAACGAAA-CCGGATTTCTTAATGCGCTTTTTTTTGTCTCTCTTCTTTTT----------------CTC----AATTT--------------------------------------TTATT----------------------GTTTTTT------------------ATTTTGTATTCTTTTT---AAT--------------------------------TTTTTT------------------------------------------------------------------------------------ATTT------------------------------T-----------TGTTG--------------TTGTT------T--------------------------------------------------------------G-----------------------------------------------------------------------------TTTTG
dp5 XR_group8:5628043-5628181 - CAGTACTTTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTGTTTTG----------------TTT----GTTTG----------------------------------T------------------------------------------------TTTTTTT-----------------TTGTT---GT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGTTTTTGTATATATCTTTCGATCGACGGGTTTTCATAGCTATAGCGCTGAAGC---------------TTTAGGCCTGAAGAAA----------------------ATGC--------TCAATAG---AAATCTC---------------A
droPer2 scaffold_22:1231769-1231866 - TTCTCTGCTTGTT------G-TTTC--------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGG----------------------------TTTTGGTGGTTT-------------------------------------TCTCTGTTTTATTTTGTCTG---------------------------------CTTCTTT-----------------------------------------------------------------------------------------------------------------------------------------------------CTATTTGTCGTGTTTT-----------TGTTG-----------CTTTTGC------TT------------------------------------------------------------------------------------------------------------------------------------------T-TGCCT
droAna3 scaffold_13250:1908567-1908780 - TCTTTATATGA---TC---CGTATA------------------------------------------------TATGAAT---------ATATGTAAT---------------------------------------------------------------------------------------------------------AATATAA-------GT-----TGCA-AACTGCCAGGGGTATATTAACTTCTGCTCC-GCTCAAAGATAGTTTTC--C------------------------TTTGTTGTTTTG----------------TAT----GTTT---------------------------------------TGTTAC--------T---------TAA---------------------------------------------------------TGTTAAATGCTTGTG--AC-----------------------------------------TAAACA------------------------------------------GTCTC---G--------------------------------------------------------------GTT---------------------------------------------------AG-TTTTTTTGGAAGTGGGTCTTAATAA----------------------------AAAT--------A-TTCAG---AGATC---TACCTCTTACTTTTA
droBip1 scf7180000396107:2885-3164 + TTTTTTGTAGC---TTTATTGT-------------------------------------------------------------------------AATAAAATGGTT---------------AAATTATGATGT-----TCTCACAAGGATCGACCAACTATATCCGATGTTTCT------------------------------------------------GGTTT-TACTTG-TATGGTATATCAACTTCGTTTCC-G-CCGAAGTTAGCTTTC--C------------------------TTTCTTGTTATACCTT----------TGTAT----AACCT--------------------------------------TGTTTG--------T---------ATA---------------------------------------------------------CATCGTGTGCTCGAGAAAC-----------------------------------------GAAATT------------------------------------------------------------------------------------------------------------------------------------GTTCGTTTAACGGAATTTTTT---TATTGCGCATTA-----------------G---------------TTTTCGCAATAGTGGGTTGCCTGCAGAAT---------GTG---AGTTATTGTGCGAATTTTGAAGA
droKik1 scf7180000302531:5071-5289 - GGTATAGGTAA------AATGTTATCAAACTCTGTTTAGTGTCTGTTTT------------------------CGGCATT---------AT-------------------------------AATTTATGATATAAATA-----TGA----------------------------------------------------------------------AA-----ACCA-ATCTGC-AAGGGTATACAAACTTCGGCG-T-G-CCGAAGTTAGCT-TC--C------------------------TTTCTTGTTTTT----------------CTG----G---------------------------------------------------------------------------------------TTTATC-----------------------------------------------------------------------------------------------------------------------------------------------------ATTGTTATTTTCTTTTTGTT----T------TGGTGGTATA-----------------------------------CTCTG-----------------------------------------------------AATGTCATCTAA-GA-GATCGTCCAATAG---------------------------TG---ATATC-------------TCCTC
droFic1 scf7180000454048:492158-492390 + CTTATAGATTTTGATC---GACATA---------------------------------------------TT--------------------------------------------------------------------------------------------------------------------------------------------------------TGA-TGACTGC-AAGGGTATATAAGCTTCGGCT-T-G-CCGAAGCTAGCT-TC--C------------------------TTTCTTGTTTTT----------------ATT------------------------------CTCGTTT----------CGGGT----------------------GTCGATT------------------------------------------------------------------------------GGT-CAACTGACACATTGAC-------------------------------------TTGCATTTTGTCAATAGCGTTTTGTCTC---GTTTGATT----------------------CG------ATT-TGATGAAGGTCGTTT----CTATT--------------------------------------------------------------------AGCGCCCATAAA-AT-A----------------------ACGG--------A-AGTTT---GTATCACATTCGACCTTCA-CAG
droEle1 scf7180000490641:5567-5835 + GTCATAGCTTC------AATGTTTTTAAAC------------------------------------------------AT---------ATACGCAAGTAAA-----TCATAATTTTAATGT-----------------TTTCAAAAATAT----------------TTAATTCTTG-----------------------------------------------CGA-TAGCTGC-AAGGGTATATGAACTTCGGCT-T-G-CCGAAGTTTGCT-TT--C------------------------TTTCTTGTTTTTCATATATTC---TGCGG------CTGTTGTAGTAT-------------------------------------GTTTTGG--------------------------------CCCCTC-----------------------------------------------------------------------------------------------------------------------------------------------------CTGGTTGCCTTCTTTCTGTACCTC-----------ATAACGTCCGTA-----------ATTT-------------------------------------------------------AG-TTTTTGGGTAATTTTGTACGGGCCAA-AA-A----------------------ATGT--------A-GGGCG---AAGTTTCATACC----------A
droRho1 scf7180000772239:836-1054 + GAATGCATCAT-----------ATG--------------A--ATAATTT-T-----------------------------------------------------------------------------------------------------------------------------G--------G------------A---AAATATAA-------TTTGCAGAATA-TTCTGC-AAGGGTATTTCAACTTCGGCTCC-GCCCGAAGTTAGCTTTC--C------------------------TTTCTTGTTTTA----------------TTT----AATTT--------------------------------------TATTT----------------------ATTTATTATTTAGCTTCG-------CAATACGGAT-TTTGT---ATT--------------------------------TTGTTT------------------------------------------------------------------------------------ATTT------------------------------T-----------TAGTG--------------TATTT--------------------------------------------------------------------AGCTT------------------------------ACCATCACAATCATAGT-TGTAGAGATGATT-----CACCATTCA---C
droBia1 scf7180000301254:3525-3769 - TTTATATTTTA------AAGAATTTCGAATTCA----------------------------------------AATTAAT---------A--------------------------------AAATTATGAATTAATTT-------------------------------------------------------------------------------------TTA-TAACTGC-AAGGGTATACAAACTTCGGCT-T-G-CCGAAGTTAACT-TC--C------------------------TTTCTTGTTTTT----------------TTTGTGTGTTTGCGCCTTT-------------------------------------GT-----------------------------------------------G----------------------ATTT--TTGA---------------ATTT-----GATCCCAGTGCCAAATTTACTTTGAGGTATTTTTGA--------------------------------------TATTTTATTTC---ATTTTATTTTTCTTTTTGTA----T------TCTTATAATG-----------------------------------CCCCT-----------------------------------------------------TGTCTGTTCTAA-G-------------------------------------------------------------------AAA
droTak1 scf7180000414453:33968-34154 + AAATTGAACAT-----------TTT-------------------------T-----------------------------------------------------------------------------------------------------------------------------G--------C------------G---ATTTGTTAATTAATAGG-----AATG-ATCTGC-AAGGGTATATAAGCTTCGGCT-G-G-CCGAAGCTAGCT-TC--C------------------------TTTCTTGTTTTG----------------GTT----GATTT--------------------------------------TGTTATATT-----------------------CG------------------ATTTAAAAATTTTTTTTTTTTATAGAA---------------------------TTGATTGTT-AAACT----CGTTGGC-------------------------------------ACTC------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------TTCTGCCAATAT----------TCGC--------C-----------------------------TGG
droEug1 scf7180000407771:977-1072 - TTTTGTTTTGT---TT---TG-TTT--------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-TT--T------------------------TGTTTTGTTTTT----------------GTT------------------------------TTTGTTTTGTTTTGTTTTGTTTTGTT-------------------------------------------------------------------------------------------------TTGTTT------------------------------------------------------------------------------------TGTTTTGTT-------------------------T-----------TGT-T--------------TTG-------TT-------------------------------------------------------------------------------------------------------------------------------------------TTGTTT
dm3 chr2R:18750772-18750863 + TGGCAACTTTT------CACC---------------ATTT---------G---------------------------------------------------------------------------------------------------------------------ATACTTTTCG-----------------------------------------------------------------------------GT-TTG-ATTTAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------GGTTTCGCTCAA-GA-G----------------------TCGC--------T-CGGTG---TGATTTGTTATCCCTTTTGCGGA
droSim2 2r:19278314-19278401 + AACTTTTCACC-------------------------ATTT---------G---------------------------------------------------------------------------------------------------------------------ATACTTTTCG-----------------------------------------------------------------------------GT-TTG-ATTTAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------GGTTTCGCTCAA-GA-T----------------------TCGC--------T-CGGTG---TGATTTCTTATCCCTTTTGCGGA
droSec2 scaffold_114:27882-27973 + TTTTTGTTTTGTT------TTGTTCC----------ATTC---------T---------------------------------------------------------------------------------------------------------------------ATACTTGTTG-----------------------------------------------------------------------------TT-ATG-TTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTAATAATTTTTTTTTTTTT-----------------------------------TTT------------------------------------------------------------------------------------TTTT------------------------------T-----------TTTGG--------------CCACC------T-------------------------------------------------------------AG------------------------------------------------------------------------------TTTC
droYak3 v2_chr3L_random_302:5349-5526 + GCCTCGATTTGTT------G-TTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------TGGCTTGCTC----TGTTGCGTCGCAATTT--------------------------------------------------------------------------------ATG----------------------ACTTCATTCG---------------GCTC-----GATTGAGGCGATAAGACTACTGTTTG---GCCCCGAAGAAGTTGCCTAAT----------------------------------GTT-------------------TTCGACATGTTT-------------------------------CAGCT--------------------------------------------------------------------GGTGTCGCCGGA-GC-G----------------------GCGC--------T-TGGAA---AAGGCGCATCCCACCTTCACGGA
droEre2 scaffold_4690:14618379-14618470 + GCCATTTGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTTTTTTG----------------TTT----GCTTT----TGAAGCAATTTCATGTCGTTTTTTTGTTTGT------------------------------------------------TTTCATT-----------------TTGTT---GC---------------------------TTGTTT------------------------------------------------------------------------------------GCT------------------------------------------------------------------------TT-------------------------------------------------------------------------------------------------------------------------------------------TTATGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TTTTTAGCTTA------AACGTTTT-------------------------TCCACT--------------TTTGATGGCT---------ATAGGTAAGGAAA-----GGGTTACCAAA------------------------------------------------------------------------------------------------------------AA-TGTTGC-AAGGGTATACAAACTTTGACG-CGG-TCGAAGTTAGCC-CCGGC------------------------CCTCTGGTTTTT---------TGTTTTGTCT----GGTTGTGTTTCAAATGAGTTTATGTGTTTTGGCTAACTGT--------------------------------------------------------------TTTCTTT---TTGTT--------------------------------CTGTTT------------------------------------------------------------------------------------GTTT------------------------------T-----------TGCTG--------------CAGCT--------------------------------------------------------------------GGTTTCGCCTGA-GA-A----------------------ACGC--------C-TGGAG---AGATCTCATCCCACATTCACGGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTGA-GA-A----------------------ACGC--------C-TGGAG---A......................2114.00401300
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-A----------------------ACGC--------C-TGGAG---AGATCTC................2013.00300120
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTGA-GA-A----------------------ACGC--------C-TGGAG---AG.....................2212.00200200
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------ACGC--------C-TGGAG---AGATCTCATCC............2212.00200020
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCTGA-GA-A----------------------ACGC--------C-TGGAG---AGATCTC................2811.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGC--------C-TGGAG---AGATCTCATCC............2011.00100100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-A----------------------ACGC--------C-TGGAG---AGATCTCATCC............2411.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GA-A----------------------ACGC--------C-TGGAG---AGATCT.................2011.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGC--------C-TGGAG---AGATCTCATCCCA..........2211.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GA-A----------------------ACGC--------C-TGGAG---AGATCTCAT..............2311.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGA-GA-A----------------------ACGC--------C-TGGAG---A......................1811.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGA-GA-A----------------------ACGC--------C-TGGAG---AG.....................2011.00101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGC--------C-TGGAG---AGATCTCAT..............1911.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTGA-GA-A----------------------ACGC--------C-TGGAG---AGATCT.................2511.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------ACGC--------C-TGGAG---AGATCTCATCCCACATT......2811.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---AGATCTCATCCCACATT......1911.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-GA-A----------------------ACGC--------C-TGGAG---AGATCT.................2111.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGC--------C-TGGAG---AGATCTCATCCCAC.........2411.00101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCTGA-GA-A----------------------ACGC--------C-TGGA...........................2011.00101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------ACGC--------C-TGGAG---AGATCTCAT..............2011.00100100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-A----------------------ACGC--------C-TGGAG---AGATCT.................1911.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-A----------------------ACGC--------C-TGGAG---AGATCTC................1911.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------ACGC--------C-TGGAG---AGATCTCATCCCAC.........2511.00101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCCTGA-GA-A----------------------ACGC--------C-TG.............................1911.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------ACGC--------C-TGGAG---AGATCTC................1811.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC--------C-TGGAG---AGATCTCATCC............1911.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGA-GA-A----------------------ACGC--------C-TGGAG---AGATCT.................2311.00100100
........................................................................TGATGGCT---------ATAGGTAAGGAAA-----GGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2470.29200020
.......................................................................................................................................................................................................................................................................CGAAGTTAGCC-CCGGC------------------------CCTCTGGTT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.25505000
.........................................................................GATGGCT---------ATAGGTAAGGAAA-----GGGTTAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2760.17100100
.TTTTAGCTTA------AACGTTTT-------------------------TCCACT--------------T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
.....................................................................................................................................................................................................................................TGTTGC-AAGGGTATACAAACTTTGACG-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
.......................................................T--------------TTTGATGGCT---------ATAGGTAAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100001
....TAGCTTA------AACGTTTT-------------------------TCCACT--------------TTTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100010
droVir3
TTTACTATTTTC---------------------------C---------G---------------------------------------------------------------------------------------------------------------------GTACTTCTTAGATAGAGGCAAAGCACTATGAGCATTAT-------GAAAAGG-----TAGG-GTCTGC-AGGGGTATTAGATCTTTGGCG-T-G-CCGAAGATAGCCCTT--C------------------------TTTCTCGTTTTT----------------TTT-------------ACAATTC---------------------------AATTT-------------------------------------------------------------------------ACTGCATATG---------------GCAA-----G----------------------------TCTTAAACAA-TT----------------------------------------------GTTTTTTTTTTTTTTTTATA----T------CCT--------TGCAGAGGGTATTATAATTT---T--------------------------------------------------------------------GTCGTGGAATGG-GT-A------------------ACGCATAG--------A-AGGAG---ACATC---TCCGAC---CCCATASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................TCTTAGATAGAGGCAAAGCACTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.5010000000008000000000000000000100000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATG---------------GCAA-----G----------------------------TCTTAAACAA-TT----------------------------------------------GTTTTT....................................................................................................................................................................................................................2720.501000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................................................................................................................GGGTATTAGATCTTTGGCG-T-G-C.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.153000000000300000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-GT-A------------------ACGCATAG--------A-AGGAG---AC.....................2080.131000001000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TGAGCATTAT-------GAAAAGG-----TAGG-GTCTGC-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2780.131000000000000000000000000000000000000010000000000000000000000000
......................................................................................................................................................................................................GCATTAT-------GAAAAGG-----TAGG-GTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2290.111000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................ACTTCTTAGATAGAGGCAAAGCACTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.102000000000000000000000000002000000000000000000000000000000000000
............................................................................................................................................................................TCTTAGATAGAGGCAAAGCACTATGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.102000020000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCATAG--------A-AGGAG---ACATC---TC.............21200.102000000000000000000000000000000000020000000000000000000000000000
.................................................................................................................................................................................................................................................TATTAGATCTTTGGCG-T-G-CCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................CTTAGATAGAGGCAAAGCACTATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................TTGGCG-T-G-CCGAAGATAGCCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000001000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TATTAGATCTTTGGCG-T-G-CCGAAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................ACTTCTTAGATAGAGGCAAAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................TAGATAGAGGCAAAGCACTATGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000001000000000000000000000000000
...........................................................................................................................................................................TTCTTAGATAGAGGCAAAGCACTATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................GTACTTCTTAGATAGAGGCAAAGCACTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................ACTTCTTAGATAGAGGCAAAGCACTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTT---T--------------------------------------------------------------------GTCGTGGAAGT.........................................................................18200.051000000000000000000000000000000000000000000000000000000000000100
........................................................................................................................................................................TACTTCTTAGATAGAGGCAAAGCACT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................CTATGAGCATTAT-------GAAAAGG-----T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................TTGGCG-T-G-CCGAAGATAGCCCTT--C------------------------T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000100000000000000000000000000000000000000
droMoj3
CTCTCTCCTTTTG------CT---------------TTTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G----------------TCT----GTTTGTGTCTCGCATATGTTTA--------------------------------------CCTTGAATA---------------------------------CG--------------------------------------------------------------------------------TCCTTGAAGA-TTTGTCTTATTTTCGTTTTATATTTTGTTTATAGCC----------GT------------------------------T-----------TGCTG--------------TTGTT------G------------------------------------------------------------------------------------------------------------------------------------------T-TGTTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCC----------GT------------------------------T-----------TGCTG--------------TTGTT------G------------------------------------------------------------------------------------------------------------------------------------------T-.....1830.331000100
droGri2
AAACGCT----------------CA-------------------------TCCGCTGAGCAGTCAGTGAATTTGCTGGCTGCATCCATCCTGGGCAAGCGCA-----GAATTACTCGCAACC-----------------TTCCAAAAACTC----------------ACAACTCTCG-----------------------------------------------------------------------------TT-CTG-GTTGAAAACGAAA-CCGGATTTCTTAATGCGCTTTTTTTTGTCTCTCTTCTTTTT----------------CTC----AATTT--------------------------------------TTATT----------------------GTTTTTT------------------ATTTTGTATTCTTTTT---AAT--------------------------------TTTTTT------------------------------------------------------------------------------------ATTT------------------------------T-----------TGTTG--------------TTGTT------T--------------------------------------------------------------G-----------------------------------------------------------------------------TTTTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................................................................GTGAATTTGCTGGCTGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.33110
dp5
CAGTACTTTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTGTTTTG----------------TTT----GTTTG----------------------------------T------------------------------------------------TTTTTTT-----------------TTGTT---GT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGTTTTTGTATATATCTTTCGATCGACGGGTTTTCATAGCTATAGCGCTGAAGC---------------TTTAGGCCTGAAGAAA----------------------ATGC--------TCAATAG---AAATCTC---------------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTT-----------------TTGTT---GT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTGTT....................................................................................................................................................21110.0910100000000
.......................................................................................................................................................................................................................................................................................................................................................G----------------------------------T------------------------------------------------TTTTTTT-----------------TTGTT---GT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT........................................................................................................................................................20130.0810100000000
.............................................................................................................................................................................................................................................................................................................................................TT----GTTTG----------------------------------T------------------------------------------------TTTTTTT-----------------TTGT.........................................................................................................................................................................................................................................................................................................................................................19190.0510100000000
droPer2
TTCTCTGCTTGTT------G-TTTC--------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGG----------------------------TTTTGGTGGTTT-------------------------------------TCTCTGTTTTATTTTGTCTG---------------------------------CTTCTTT-----------------------------------------------------------------------------------------------------------------------------------------------------CTATTTGTCGTGTTTT-----------TGTTG-----------CTTTTGC------TT------------------------------------------------------------------------------------------------------------------------------------------T-TGCCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TCTTTATATGA---TC---CGTATA------------------------------------------------TATGAAT---------ATATGTAAT---------------------------------------------------------------------------------------------------------AATATAA-------GT-----TGCA-AACTGCCAGGGGTATATTAACTTCTGCTCC-GCTCAAAGATAGTTTTC--C------------------------TTTGTTGTTTTG----------------TAT----GTTT---------------------------------------TGTTAC--------T---------TAA---------------------------------------------------------TGTTAAATGCTTGTG--AC-----------------------------------------TAAACA------------------------------------------GTCTC---G--------------------------------------------------------------GTT---------------------------------------------------AG-TTTTTTTGGAAGTGGGTCTTAATAA----------------------------AAAT--------A-TTCAG---AGATC---TACCTCTTACTTTTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TTTTTTGTAGC---TTTATTGT-------------------------------------------------------------------------AATAAAATGGTT---------------AAATTATGATGT-----TCTCACAAGGATCGACCAACTATATCCGATGTTTCT------------------------------------------------GGTTT-TACTTG-TATGGTATATCAACTTCGTTTCC-G-CCGAAGTTAGCTTTC--C------------------------TTTCTTGTTATACCTT----------TGTAT----AACCT--------------------------------------TGTTTG--------T---------ATA---------------------------------------------------------CATCGTGTGCTCGAGAAAC-----------------------------------------GAAATT------------------------------------------------------------------------------------------------------------------------------------GTTCGTTTAACGGAATTTTTT---TATTGCGCATTA-----------------G---------------TTTTCGCAATAGTGGGTTGCCTGCAGAAT---------GTG---AGTTATTGTGCGAATTTTGAAGASizeHit CountTotal NormTotal
No Reads
droKik1
GGTATAGGTAA------AATGTTATCAAACTCTGTTTAGTGTCTGTTTT------------------------CGGCATT---------AT-------------------------------AATTTATGATATAAATA-----TGA----------------------------------------------------------------------AA-----ACCA-ATCTGC-AAGGGTATACAAACTTCGGCG-T-G-CCGAAGTTAGCT-TC--C------------------------TTTCTTGTTTTT----------------CTG----G---------------------------------------------------------------------------------------TTTATC-----------------------------------------------------------------------------------------------------------------------------------------------------ATTGTTATTTTCTTTTTGTT----T------TGGTGGTATA-----------------------------------CTCTG-----------------------------------------------------AATGTCATCTAA-GA-GATCGTCCAATAG---------------------------TG---ATATC-------------TCCTCSizeHit CountTotal NormTotal
No Reads
droFic1
CTTATAGATTTTGATC---GACATA---------------------------------------------TT--------------------------------------------------------------------------------------------------------------------------------------------------------TGA-TGACTGC-AAGGGTATATAAGCTTCGGCT-T-G-CCGAAGCTAGCT-TC--C------------------------TTTCTTGTTTTT----------------ATT------------------------------CTCGTTT----------CGGGT----------------------GTCGATT------------------------------------------------------------------------------GGT-CAACTGACACATTGAC-------------------------------------TTGCATTTTGTCAATAGCGTTTTGTCTC---GTTTGATT----------------------CG------ATT-TGATGAAGGTCGTTT----CTATT--------------------------------------------------------------------AGCGCCCATAAA-AT-A----------------------ACGG--------A-AGTTT---GTATCACATTCGACCTTCA-CAGSizeHit CountTotal NormTotal
No Reads
droEle1
GTCATAGCTTC------AATGTTTTTAAAC------------------------------------------------AT---------ATACGCAAGTAAA-----TCATAATTTTAATGT-----------------TTTCAAAAATAT----------------TTAATTCTTG-----------------------------------------------CGA-TAGCTGC-AAGGGTATATGAACTTCGGCT-T-G-CCGAAGTTTGCT-TT--C------------------------TTTCTTGTTTTTCATATATTC---TGCGG------CTGTTGTAGTAT-------------------------------------GTTTTGG--------------------------------CCCCTC-----------------------------------------------------------------------------------------------------------------------------------------------------CTGGTTGCCTTCTTTCTGTACCTC-----------ATAACGTCCGTA-----------ATTT-------------------------------------------------------AG-TTTTTGGGTAATTTTGTACGGGCCAA-AA-A----------------------ATGT--------A-GGGCG---AAGTTTCATACC----------ASizeHit CountTotal NormTotal
No Reads
droRho1
GAATGCATCAT-----------ATG--------------A--ATAATTT-T-----------------------------------------------------------------------------------------------------------------------------G--------G------------A---AAATATAA-------TTTGCAGAATA-TTCTGC-AAGGGTATTTCAACTTCGGCTCC-GCCCGAAGTTAGCTTTC--C------------------------TTTCTTGTTTTA----------------TTT----AATTT--------------------------------------TATTT----------------------ATTTATTATTTAGCTTCG-------CAATACGGAT-TTTGT---ATT--------------------------------TTGTTT------------------------------------------------------------------------------------ATTT------------------------------T-----------TAGTG--------------TATTT--------------------------------------------------------------------AGCTT------------------------------ACCATCACAATCATAGT-TGTAGAGATGATT-----CACCATTCA---CSizeHit CountTotal NormTotal
No Reads
droBia1
TTTATATTTTA------AAGAATTTCGAATTCA----------------------------------------AATTAAT---------A--------------------------------AAATTATGAATTAATTT-------------------------------------------------------------------------------------TTA-TAACTGC-AAGGGTATACAAACTTCGGCT-T-G-CCGAAGTTAACT-TC--C------------------------TTTCTTGTTTTT----------------TTTGTGTGTTTGCGCCTTT-------------------------------------GT-----------------------------------------------G----------------------ATTT--TTGA---------------ATTT-----GATCCCAGTGCCAAATTTACTTTGAGGTATTTTTGA--------------------------------------TATTTTATTTC---ATTTTATTTTTCTTTTTGTA----T------TCTTATAATG-----------------------------------CCCCT-----------------------------------------------------TGTCTGTTCTAA-G-------------------------------------------------------------------AAASizeHit CountTotal NormTotal
No Reads
droTak1
AAATTGAACAT-----------TTT-------------------------T-----------------------------------------------------------------------------------------------------------------------------G--------C------------G---ATTTGTTAATTAATAGG-----AATG-ATCTGC-AAGGGTATATAAGCTTCGGCT-G-G-CCGAAGCTAGCT-TC--C------------------------TTTCTTGTTTTG----------------GTT----GATTT--------------------------------------TGTTATATT-----------------------CG------------------ATTTAAAAATTTTTTTTTTTTATAGAA---------------------------TTGATTGTT-AAACT----CGTTGGC-------------------------------------ACTC------------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------TTCTGCCAATAT----------TCGC--------C-----------------------------TGGSizeHit CountTotal NormTotal
No Reads
droEug1
TTTTGTTTTGT---TT---TG-TTT--------------T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT-TT--T------------------------TGTTTTGTTTTT----------------GTT------------------------------TTTGTTTTGTTTTGTTTTGTTTTGTT-------------------------------------------------------------------------------------------------TTGTTT------------------------------------------------------------------------------------TGTTTTGTT-------------------------T-----------TGT-T--------------TTG-------TT-------------------------------------------------------------------------------------------------------------------------------------------TTGTTTSizeHit CountTotal NormTotal
No Reads
dm3
TGGCAACTTTT------CACC---------------ATTT---------G---------------------------------------------------------------------------------------------------------------------ATACTTTTCG-----------------------------------------------------------------------------GT-TTG-ATTTAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------GGTTTCGCTCAA-GA-G----------------------TCGC--------T-CGGTG---TGATTTGTTATCCCTTTTGCGGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCTCAA-GA-G----------------------TCGC--------T-CGGTG---TG.....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
droSim2
AACTTTTCACC-------------------------ATTT---------G---------------------------------------------------------------------------------------------------------------------ATACTTTTCG-----------------------------------------------------------------------------GT-TTG-ATTTAAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------GGTTTCGCTCAA-GA-T----------------------TCGC--------T-CGGTG---TGATTTCTTATCCCTTTTGCGGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
TTTTTGTTTTGTT------TTGTTCC----------ATTC---------T---------------------------------------------------------------------------------------------------------------------ATACTTGTTG-----------------------------------------------------------------------------TT-ATG-TTATT------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTAATAATTTTTTTTTTTTT-----------------------------------TTT------------------------------------------------------------------------------------TTTT------------------------------T-----------TTTGG--------------CCACC------T-------------------------------------------------------------AG------------------------------------------------------------------------------TTTCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTT-----------------------------------TTT------------------------------------------------------------------------------------TTTT------------------------------T-----------TT..............................................................................................................................................................................21201.553131000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTT-----------------------------------TTT------------------------------------------------------------------------------------TTT...........................................................................................................................................................................................................................18200.601212000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTTTTTTTTTT-----------------------------------TTT------------------------------------------------------------------------------------TTTT------------------------------T-----------................................................................................................................................................................................22200.3577000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTTTTTTTTTT-----------------------------------TTT------------------------------------------------------------------------------------TT............................................................................................................................................................................................................................20200.0511000
droYak3
GCCTCGATTTGTT------G-TTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------TGGCTTGCTC----TGTTGCGTCGCAATTT--------------------------------------------------------------------------------ATG----------------------ACTTCATTCG---------------GCTC-----GATTGAGGCGATAAGACTACTGTTTG---GCCCCGAAGAAGTTGCCTAAT----------------------------------GTT-------------------TTCGACATGTTT-------------------------------CAGCT--------------------------------------------------------------------GGTGTCGCCGGA-GC-G----------------------GCGC--------T-TGGAA---AAGGCGCATCCCACCTTCACGGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGA-GC-G----------------------GCGC--------T-TGGAA---AAGGCG.................2521.00200000020000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGGA-GC-G----------------------GCGC--------T-TGGAA---AA.....................2220.50101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCGGA-GC-G----------------------GCGC--------T-TGGAA---AA.....................2420.50101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCT--------------------------------------------------------------------GGTGTCGCCGGA-GC-G----------------------GCGC--------.................................2320.50100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC--------T-TGGAA---AAGGCGCATCCCACCTTCACG..2920.50100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAA---AAGGCGCATCCCACCTTCACGGA2820.50100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-------------------TTCGACATGTTT-------------------------------CAGCT--------------------------------------------------------------------GG..................................................................................2120.50101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGA-GC-G----------------------GCGC--------T-TGGAA---AAGGC..................2120.50101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GC-G----------------------GCGC--------T-TGGAA---AAGGC..................1920.50100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT--------------------------------------------------------------------GGTGTCGCCGGA-GC-G----------------------GCGC--------T-T..............................2320.50101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGA-GC-G----------------------GCGC--------T-TGGAA---AAG....................2020.50100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGCCGGA-GC-G----------------------GCGC--------T-TGG............................2120.50101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGTTGCCTAAT----------------------------------GTT-------------------TTCGA...................................................................................................................................................................................................2420.50100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGTCGCCGGA-GC-G----------------------GCGC--------T-TGGAA---.......................2520.50101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGGA-GC-G----------------------GCGC--------T-TGGAA---AAGGCG.................2620.50101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC--------T-TGGAA---AAGGCGCATCCCACCTTCACGG.3020.50100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCGGA-GC-G----------------------GCGC--------T-TGG............................2020.50101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGGA-GC-G----------------------GCGC--------T-TGGAA---AAGGC..................2520.50100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGGA-GC-G----------------------GCGC--------T-TGGAA---AAGGCGCAT..............2820.50100000010000
droEre2
GCCATTTGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTTTTTTG----------------TTT----GCTTT----TGAAGCAATTTCATGTCGTTTTTTTGTTTGT------------------------------------------------TTTCATT-----------------TTGTT---GC---------------------------TTGTTT------------------------------------------------------------------------------------GCT------------------------------------------------------------------------TT-------------------------------------------------------------------------------------------------------------------------------------------TTATGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 03:11 AM