ID:

dwi_1980

 Coordinate:

scf2_1100000004762:1355247-1355471 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-36.9 -36.9 -36.9

Flybase annnotation

exon [dwil_GLEANR_1106:8]; exon [dwil_GLEANR_1106:7]; CDS [Dwil\GK10811-cds]; CDS [Dwil\GK10811-cds]; intron [Dwil\GK10811-in]

Repeatable elements

NameClassFamilyStrand
(TTC)nSimple_repeatSimple_repeat+
mature
  1. scf2_1100000000833:1029-1048 -
  2. scf2_1100000004511:2592072-2592091 -
  3. scf2_1100000004511:2661191-2661210 -
  4. scf2_1100000004511:7348980-7348999 -
  5. scf2_1100000004511:9560364-9560383 -
  6. scf2_1100000004513:253859-253878 -
  7. scf2_1100000004513:1248328-1248347 -
  8. scf2_1100000004577:2891624-2891643 -
  9. scf2_1100000004585:2951445-2951464 -
  10. scf2_1100000004585:7185283-7185302 -
  11. scf2_1100000004590:4263642-4263661 -
  12. scf2_1100000004762:998491-998510 -
  13. dwi_1980  scf2_1100000004762:1355413-1355432 -
  14. scf2_1100000004762:3555332-3555351 -
  15. scf2_1100000004768:1743429-1743448 -
  16. scf2_1100000004837:950914-950933 -
  17. scf2_1100000004909:3384650-3384669 -
  18. scf2_1100000004909:9438236-9438255 -
  19. scf2_1100000004909:9967708-9967727 -
  20. scf2_1100000004921:1195273-1195292 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGGTGCAATCCACAATCCACATCACAGAAACTACACGACAGCCACAACAGGTGAGTAAAGAGTCAGAGTCAGTAGTAGTAGTCGAAGTAGAAGAAGAAGAAGAAGAAGAAGAAGGCAACCGTGTCCACAACAAGGTGAACCACCAACCAGCAGTGCACACCACGCCCTCGACAACAATATCAAAATTCAAAAATGCTAATTGTCCTCGTTCTCCTTTTTTTTTTTTCTTCCTCCATTCCCCCCGTTTTTGCCCCGTTTTGTTGCCAACAATTCAGGTTCATTTCCGCCCAGTCCAGCCGATAGCGGTGTATCCGATGTGGATAGC
**************************************************.(((........)))((((.....(((((((.((..((((((((((((((((((((((.(((((((....((((.(((.....(((.........)))....))).))))...)))..(((..(((((....................)))))..))))))).)).))))))))))))))...............))))))..))..))))))).....))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M020
head
 M045
female body
 V118
embryo
 V119
head
................................................................................................AAGAAGAAGAAGAAGAAGGCAACCGC........................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0
..................................................................................................................................................CCAGCAGTGAACAGCACGC................................................................................................................................................................ 19 2 2 0.50 1 0 1 0 0
................................................AGGTGGGTAACGAGTCAGC.................................................................................................................................................................................................................................................................. 19 3 7 0.29 2 0 0 1 1
....................ATCACAGAAACTGCGCGCC.............................................................................................................................................................................................................................................................................................. 19 3 13 0.08 1 0 1 0 0
...........................................................................................................GAACAAGGCGACCGTGGCC....................................................................................................................................................................................................... 19 3 19 0.05 1 0 1 0 0
.........................................................................................GAAGAAGAAGAAGAAGAAGA........................................................................................................................................................................................................................ 20 0 20 0.05 1 0 0 1 0
......................................................................................................................................GTGAACCTCTAACCCGCA............................................................................................................................................................................. 18 3 20 0.05 1 0 1 0 0

Anti-sense strand reads

GCCACGTTAGGTGTTAGGTGTAGTGTCTTTGATGTGCTGTCGGTGTTGTCCACTCATTTCTCAGTCTCAGTCATCATCATCAGCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCCGTTGGCACAGGTGTTGTTCCACTTGGTGGTTGGTCGTCACGTGTGGTGCGGGAGCTGTTGTTATAGTTTTAAGTTTTTACGATTAACAGGAGCAAGAGGAAAAAAAAAAAAGAAGGAGGTAAGGGGGGCAAAAACGGGGCAAAACAACGGTTGTTAAGTCCAAGTAAAGGCGGGTCAGGTCGGCTATCGCCACATAGGCTACACCTATCG
**************************************************.(((........)))((((.....(((((((.((..((((((((((((((((((((((.(((((((....((((.(((.....(((.........)))....))).))))...)))..(((..(((((....................)))))..))))))).)).))))))))))))))...............))))))..))..))))))).....))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 V118
embryo
.....................................................................................................................................................................................................................................................................................AGTAAAGGCGGGTCAGGACG............................ 20 1 1 1.00 1 1 0 0
.....................................................................................................................................................CGTCAGGTGTCGTGCGGG.............................................................................................................................................................. 18 2 1 1.00 1 0 1 0
......................................................................................................................................................GTCAGGTGTCGTGCGGGCG............................................................................................................................................................ 19 3 9 0.67 6 5 1 0
.....................................................................................................................................................CGTCAGGTGTCGTGCGGGCG............................................................................................................................................................ 20 3 3 0.67 2 1 1 0
.....................................................................................................................................................................................................................................................................................................GTCGGCTAGGGCCACATA.............. 18 2 2 0.50 1 1 0 0
...............................................................................................................................................................................................................................................................................CGTCGTAGTAAAGGCGGGTCAGG............................... 23 3 2 0.50 1 1 0 0
..........................................................TCTGAGTCCCAGTGATCATC....................................................................................................................................................................................................................................................... 20 3 2 0.50 1 1 0 0
.....................GGTGTCTTTGACGTGCTGTC............................................................................................................................................................................................................................................................................................ 20 2 5 0.20 1 1 0 0
......................................................................................................................................................GTCAGGTGTCGTGCGGGC............................................................................................................................................................. 18 3 20 0.15 3 3 0 0
.............................................................................................................................................................................................................................................................................................CGGGTAAGGTCGGCTATT...................... 18 2 7 0.14 1 1 0 0
.......................TGTCTTTGGCGTGCTGTCTGT......................................................................................................................................................................................................................................................................................... 21 3 8 0.13 1 1 0 0
.......................................................................................................................................................................................................................................................................................TAAAGGCGGGTCGGGACAG........................... 19 3 10 0.10 1 1 0 0
......................................................................................................................................................GTCAGGTGTTGTGCGGGCG............................................................................................................................................................ 19 3 10 0.10 1 1 0 0
..........................................................TCTGAGTCCCAGTGATCAT........................................................................................................................................................................................................................................................ 19 3 10 0.10 1 1 0 0
............................................................................................................................................................................................................................................AGGGGTGCAAAGACTGGGC...................................................................... 19 3 11 0.09 1 1 0 0
..................................................................................................................................................................................................................GAGGAAAACAAAAAAAGAA................................................................................................ 19 1 11 0.09 1 0 0 1
.........GGTGTTAGGTCTAGTGTT.......................................................................................................................................................................................................................................................................................................... 18 2 12 0.08 1 0 1 0
......................................................................................................................................................................................................................................................................................GTAAAGGCGGGTCGGGACA............................ 19 3 16 0.06 1 1 0 0
.............................................................................................................................................TGGTTGGTGGTCAAGTGCG..................................................................................................................................................................... 19 3 20 0.05 1 0 1 0
.....................................................................................................................................................................................................................................GTAGGTTAGGGGGTCAAAA............................................................................. 19 3 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004762:1355197-1355521 - dwi_1980 CGGTGCAATCCACAA----TCCACATC--ACAGAA-----------------ACTACACGACAGCCACAACAGGTGAGTAAAGAGTCAGAGT-------C-----------------------------------------AGTAGTAGTAGTC------------GA------AGTAGA-------------------------------------AGAAGAAGAAG-AAGAAGAAGAAG-----------------------------------------------------------------------------GCAACCGTGTCCA-CAACAAGGTGAACCACCAACCAGCAGTG----------------CACACCACGCCCTC-----GA-----CA--------------------------------------------------------------------------------------------------------------------------------------------------ACAATAT------------------CAAAATTCAAAAATGCTAATTGTCCT-------------CGT-T---------C---TC---CTTTTTTTTTTTT-----CTTC-CTCC-----ATTCCCCC---CGTTTTT-------------------------------GCCCCGTTTTGTT----------------------------------------------GCC-A-------------------------------------------------------------------------------------------------------------------------ACAATTCAGGTTCATTTCCG-CCCAGT-------------------------CCAGCCGATAG-------C---GGTGTATCCGA----T--GTGG---ATAGC
droVir3 scaffold_13049:6892537-6892779 + dvi_18743 CGGCTCAATCCACAA----TCCACATC--ACAGAA-----------------ATTACACGACGGCCACAACAGGTGAGTGC--------------CAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA----GCTTGCTTGCCAGCAAGGTGAACCAC--------AGTG----------------CACA---CGCCCTT-----TG-----------TTGAGCG----------ACATGCCCCAAAAAATAAGAAGCAGAAAATAGAAGGCAT----------------------------------------------------------------------------------------------------------------TGG--C--AACTTGT------------------------------------------------TAATCTTGACC-----CATT-C--------ACT-------------------------------------------------GCATG---------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------------ACAGGTTCATTTCCG-CCCAGT-------------------------CCGGCGGATAG-------C---GGTGTGTCCGA----C--GTGG---ACAGC
droMoj3 scaffold_6680:5207260-5207481 + TGGTTCAATTCACAA----TCCACATC--ACAGAA-----------------ATTACACGACGGCTACAACAGGTGAGTGC---------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGGCAAGGTGAACCAC----------TG----------------CACA---CGCCCTTTTTCTTGCTGAATTGT-----ATTG----------GCATGGCCCA--------------------------------------------------------------------------------------------------------------------GCATT--------------------TGG--C--AACTTGT------------------------------------------------TAATCTTGGCC-----CATT-CTC------GCTGCTCT---CG-----------------------------------------TTT---------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------------GCAGGTTCATTTCCG-CCCAGT-------------------------CCCGCGGACAG-------C---GGCGTCTCCGA----C--GTCG---ACAGC
droGri2 scaffold_14853:3058098-3058413 + CAAAGAAATCTAAAT----T-TAAAGG--ACAAAA-----------------GC--------AGCCAAAGCAAATAC----CGCAACAACAA-------C-----------------------------------------AACAACAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACCGCAGCAGCAACAACAACAAC----------AA----------------TTGA---TGACGTC-----GA-----TTGCAGCGGTGCC----------AA----------------------------------------CACCAGCAACAAACAACAGCA---ACA--------------------------------------------------------ATAATAA------------------CAATAGCAGCAATAGCGCATTGGCCG-------------CAT-T---------G---CA---A----GATG---G-----CAGC-GTT------GCTGCCGC---TG-CCGCTGCTGATTTTTACCAGCAATTAGCAGCAGCA------------------------------------------------GCAGCAACAACAACAA-------------------------------------------------------------------------------------------------------------------------ACACGAGCGCAACAGGCAAC-GGCAGC-------------------------AGCAACAACAG-------C---AGCGCAGCAGC----T--GC-A---GCAGC
dp5 XR_group6:2222144-2222422 - CGGCGCCATCCACAA----TCCACATC--ACAGGA-----------------ACTACACGACGGCCACAACAGGTGAGTGG---------------AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------------AGGCGGCAAGGTGAACCAC----------TG----------------CACA---CGCCCTC-----GA-----CTCGATCCAAGCCGCATATACATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGATTGCTAATTGCCTTACTC------------TTCTACTTCTTTTCCTTTTCCTTTTTCTTTGC----------C---------------TT---CG----------ACT-TTGAC-TTCGTCCTCGTCCTCG------------------------------------------------TCCTCGTCTCCGCCGA-------------------------------------------------------------------------------------------------------------------------ATGGTGCAGGTTCATTTCCG-CCCAGT-------------------------CCCGCGGATAG-------C---GGCGTATCCGA----T--GTGG---ACAGC
droPer2 scaffold_9:512854-513132 - CGGCGCCATCCACAA----TCCACATC--ACAGGA-----------------ACTACACGACGGCCACAACAGGTGAGTGG---------------AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------------AGGCGGCAAGGTGAACCAC----------TG----------------CACA---CGCCCTC-----GA-----CTCGATCCAAGCCGCATATACATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGATTGCTAATTGCCTTACTC------------TTCTACTTCTTTTTCTTTTCCTTTTTCTTTGC----------C---------------TT---CG----------ACT-TTGAC-TTCGTCCTCGTCCTCG------------------------------------------------TCCTCGTCTCCGCCGA-------------------------------------------------------------------------------------------------------------------------ATGGTGCAGGTTCATTTCCG-CCCAGT-------------------------CCCGCGGATAG-------C---GGCGTATCCGA----T--GTGG---ACAGC
droAna3 scaffold_13337:14261139-14261316 - AGGCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTGTCCAGCCGCAAGGTGAACCAC----------TGCAACACTGAGCCACTGAACA---CGCCCTC-----GA-----CTCGACTCGAACC----------AC-----TTC------------------------------------------------------------------------------------------------------------------G--------------------------------ATTGATTGCTAATT------------------------------------------------TCGCTCCGTTTCGTC-CTC------G------------------------------------------------ATCCCGTT---------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------GCAGGTTCATTTCCG-CCCAGT-------------------------CCCGCGGACAG-------T---GGCGTCTCCGA----T--GTGG---ACAGC
droBip1 scf7180000396641:1026663-1027006 + TGGCTCCATCCACAA----TCCGCACC--ACAGAA-----------------ACTACACGACGGCCACAACAGGTGAGTAC---------------A-----------------------------------------------------------------------------------------------------------------------------CTGAGATAAATTCTTAAAGGCAATTGATAATACTAGTTTAAAATTATCGAATGCCTTTAAGTCTCATATTTTTGCTGAGTGCATTCAGCTCGAGAGGCAAGCGTGTCCAGCCGCAAGGTGAACCAC----------TGCAACACTGAGCCACTGCACA---CGCCCTC-----GA-----CTCGATTCGAACC----------AC-----------------------------------------------------------------------------------------------------------------------------------------------------------TTCGATTGCTAATTGCCC-------------------------------------C-GTTT------------CGTC-CTCGGTTGCCCTTCGCA----ATCTCG-------------------------------ATCCCGTT---------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------GCAGGTTCATTTCCG-CCCAGT-------------------------CCCGCAGACAG-------T---GGCGTCTCCGA----T--GTGG---ATAGC
droKik1 scf7180000302592:689805-690113 - CTATCCGCCCCACCA----TCCCTATCCGGCAGCA-----------------GCTCCA-----------GCAGCAGCT----CCGGCAG----------------------CTCACCGCTGTACGGCTC-----C-GGATCCGCTTCCGCGGTA--------GCCGCGGGCAAGGCGCCC-ATG----------------------------------------------------------------------------------------AAGC--------TGGA------------------------------GCTACCATATCCG-C---------------------------------------------------AGGCCTCATCCAC--------------------------CGGCACCGCTTCGCCC---------------------------------------------------------------------------------------------------------AACTCCAGCATC-----------------------------------CAGTCGGCG----------CCCTCATC--------------------------CGCCTCCGTTTCGCCCAGCATCTTCCCCTCG-------------------------------------------------CC--------------------------------------------------CGCCCA-------------------------------------------------------------------------------------------------------------------------ATCCTTTGCCTCCATATCCG-C-CAGTCCCTCGACACCCACAACGTCC-----------GCCA-------T---GGCGGCACCAACGGGA--GCGGGTACAGGT
droFic1 scf7180000454065:1712017-1712310 - GACAACC-----------------------------------------------------------ACAGCAGAGAAAAAA--------------TAAAC-----------------------------------------AACAGTAGTAAGC------------CA------CATAAA-------------------------------------A--------------------------------------------------------------------------------------------------------GAATATTTAACATCAAGA----------------------------------------------------------------------------------------------------------------------AAGCGCCAACAGC--CACCAAACCAAACCAAACCAAATCAAACCAACACCAACATTTATTTGCTACTCC--AAGACCTCTGAACTAAAGCCAATTAACTCAT----------------------CAGCA-----------------------ATATTATTT---------C---TCC--TCTTCTTTTTTGT-----TTTC-TTT------ATTCCGCC---CGACTTT-------------------------------GTGT------------------------------------------------------------------GT------------------------CCCGATGAA--------------------------------------------------------------------------------TCCCGATTTTAGTTGGCAAC-ATCCGT-------------------------TTGAGTAACAG-------C---GCCGAGTCCAT----TCAGTAC---GCAGC
droEle1 scf7180000491001:1409117-1409557 + TGCTGTGACCTTAGCCAGTCTAAGCGA--GATAGC--C--------------ACTGCACGCCAACAGCAGCAGCAGCAGTT-GCTGGCG---CTG-CAGCAGCAACAGCAAC---------AGAAACTGCCCAGAAGGATAATAAACTTTGGCAGCAACCATACTGCCAATACTGCCACCAAAGGATTGGGAGCTGGAGCAGTAGTGG------------------------------------------------------------------------------------------------------------------GCATGGCCA-CAGCAA----------------------------------------------------------------------------------------------------------------------------------------------TGGCAACAGCAACAGCAACGGCAACAGCAACACCTGGACGCAATCGCCAACTGGGCCTGAGTGAGGGTCAAGTGGCGAATGGTAAGCAGAAAGAATTGT--G--AGCC-----------TTGTGTTTGCGATAACGTTT---------G---TG----------TCCCTCCATTTCCCCC----------TTCCACCTCTCCTCC--------CC-TAA---------------------------ACGTTGCTAGCCAGGTCA----------------------GCAGTGCG------------------------------------------------------------------------------------------------------------------------------------------------------T-CTGCTCAACGGCAACTGTTGCGGCCGATTGCAGGCAACAG-------C---AGCAA--CAGG----G--GCCG---GCAGC
droRho1 scf7180000777610:21041-21371 - GATAATCAACTTTGG----CAGCAACC--ATGCTG-----------------CCAACACTGCCACCAAAGGATTGGGA------------------------------------------------------------------------------------------------------------------GCTGGAGCTGGAATGG------------------------------------------------------------------------------------------------------------------GCATGGCCA-CAGCAA----------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAACTACGGCAACAGCAACAGCAACACCTGGACGCAATCGCCAACTGGGCCTGAGTCAGGGTCAAGTGGCGAATGGTAAGCAGAAAGAATTGT--G--AGCC-----------TTGTGTTTGCGATAACGTTT---------G---TGT-------CCATCCCC-----CTTC-CCC------CACCCACC---CCTCCCC-------------------------------ATA-----ACGTTGCCAGCCAGG-------------------------ACAGTGCG------------------------------------------------------------------------------------------------------------------------------------------------------T-CTGCTCAACGGCAACTGTTGCGGCCGATTGCAGGCGATAG-------C---AGCAA--CAGG----G--GCCG---GCAGC
droBia1 scf7180000299102:2015936-2016212 - CAGCAACAACAACAA----CACCAACA--ACACTA-----------------TCAGCAA----------------------------------------------------CATGCCATCCAACAACAGGCTAGCAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGCAATGAATG----------------------------------------------------------------------------------------------------------------------------------------------------------------CAGC----------AG----------------CAGC---CGCCGCA-----GC-----AGCGGCC-----------------------------------------------------------------------CAGCAGCAACAGCAG------CAGCAGCAACATCAGC-----------------------ACCAGCAGCAACTTC-----------------------------------------------------------------------------------------------------------------------------CCTCCCC-------------------------------GCA-----AC-------------TGGGCGTTCTGGCCGGG---------------------------------------------------------------------------------------------------------------------------------------------------CCAATGTCACCGCCCTCG-AACAGT-------------------------TTGGGCAACAG-------TTGGGGTCTACCCAGTCCGG--ACAAGACCATGT
droTak1 scf7180000415409:316511-316687 - AGGCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTGTCCGGCAGCAAGGTGAACCAC----------TG----------------CACA---CGCCCTC-----GA-----CTCGATTCGAGCC----------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGATTGCTAATAGCCC-------------------------------------C-TTTTCTTGGCT-----CGTC-CTC------GCTCCGCG---CCGCCCT-------------------------------ATCCCGTT---------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------------GCAGGTTCATTTCCG-CCCAGT-------------------------CCCGCGGACAG-------C---GGCGTCTCCGA----C--GTGG---ACAGC
droEug1 scf7180000409471:2011631-2011808 + AGGCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTGTCCAATAGCAAGGTGAACCAC----------TG----------------CACA---CGCCCTC-----GA-----CTCAATTCGAGCC----------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGATTGCTAATTGCCC-------------------------------------CTTTTTCTTGGCT-----CGTC-CTC------GCTCCGCA---TCGCCAT-------------------------------GTCCCGTT---------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------------GCAGGTTCATTTCCG-CCCAGT-------------------------CCCGCCGACAG-------C---GGCGTCTCCGA----C--GTGG---ACAGC
dm3 chr3R:16120014-16120330 + CGCTGCCACCCACAACGGTTTCATTTC--ATCAGC-----------------CCAACACGCCCACCTCAACAGCGGCA------------------------------------------------------------------------------------------------------------------TCAGTGGCTTCAATGAGCCAGGACAAGATGCTGGCA-AAAAACGGTAAGTTGATTTATACCATTAGTGAACAAGAATTAGAAAT--------TGGA------------------------------TTTATTGG-----------------TCCAT----------TA----------------CTCA---CAC---------GA-----TG---------------------GCATAACAAAGTCC---------------------------------------------------------------------------------------------------------AAGTCAATTATAT-----------------------------------------------------------------------------------------------------------------------------------------T-TGA---------------------------ATGTACAA---AAGATAATTGTTGTGGCCTTTCGTAATAACCTTTACCTCCAACATTTGTAGGC---------------------------------------------------------------------------------------------------------------------------TACAATGCGC-CCTGGT-------------------------TCAAGCTGTTG---CCGCA---TATGACGCCAA----T--GAGC---AAGGC
droSim2 3r:5185658-5185988 - dsi_21255 CGCTGCCACCCACAACGGTTTCATTTC--ATCAGC-----------------CCAACACGCCCACCTCAACAGCGGCA------------------------------------------------------------------------------------------------------------------TCAGTGGCTTCAATGAGCCAGGACAAGATGCTGGCA-AAAAACGGTAAGTTGATTGAGGCCATTAGTGA-CAAGAGTTAGAATT--------TAGA------------------------------TTTATTGG-----------------TTCAT----------TA----------------CTCA---CTCACAC-----GA-----TA---------------------GCATAACAAAGTCC---------------------------------------------------------------------------------------------------------A-------------------------------------TTTAATTCAAAATCGTTC-------------------------------------T-ATTTA-------------------------------------------------TT-TAA---------------------------ATGTAGAA---AAGATAATTATTGTGTCCTTT--TAATAACCTTTGCTTCCAATATTTGTAGGC---------------------------------------------------------------------------------------------------------------------------TACAATACGC-CCTGGT-------------------------TCAAGCTGTTG---CCGCA---TATGACGCCTA----T--GAGC---AAGGC
droSec2 scaffold_0:9604798-9604974 - AGGCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTGTCCAGCAGCAAGGTGGACCAC----------TG----------------CACA---CGCCCTC-----GA-----CTCTATTCGAGCC----------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGATTGCTAATTGCCC-------------------------------------C-TTTTCTTGGCT-----CGTC-CTC------GCTCCGCG---CGGCTCT-------------------------------ACCCCGTT---------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------------GCAGGTTCATTTCCG-CCCAGT-------------------------CCCGCGGACAG-------C---GGCGTCTCCGA----C--GTGG---ACAGC
droYak3 X:13737835-13738198 + TGGTGAGCAGTGCCA----GCCAACCC--ATACTCTCGCCCGCCAAACAGCAGCTAC--------CGCAACAGATCTATGT---G--A-------CCAGC-----------------------------------------AATGGTAGTACAA------------CA------GCCAGC-------------------------------------G---GAGGA---ACCATCTACAAGGCAGCCAGC-------------------------------------------------CAG-------------GCA----CTTAGCTCGCCAA-------------------------------------------------------------------------C-----------------------------------------------------------------------CACCAGCAGCAGCAG------CAGTAGCAACACCACCACCCAC----CATCCG---------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------ACA-----AG-------------A---------------------------------------A--------GTATCTGCGCGAAAAGATGCACGTCCAGATGGATCATAGTAGTCACGTGGCCTCAACTGTTACGGTGGTCAGTTCGCCGGCCTCCTCGAACAATTCCTCGATTAGCAGCTCCAATA--CTGGCTCCGTATCCGGTTCGGG-------------------------ATCCTCGACAGCGGC---------TGTGAATGG----T--GGCA---ATAG-
droEre2 scaffold_4784:16296366-16296543 + AGGCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTGTCCAGCAGCAAGGTGAACCAC----------TG----------------CACA---CGCCCTC-----GA-----CTCGATTCGAGCC----------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGATTGCTAATAGCCC-------------------------------------CTTTTTCTTGGCT-----CGTC-CTC------GCTCCGCG---CGGCTCT-------------------------------ATCCCGTT---------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------------GCAGGTTCATTTCCG-CCCAGT-------------------------CCCGCGGACAG-------C---GGCGTCTCCGA----C--GTGG---ACAGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CGGTGCAATCCACAA----TCCACATC--ACAGAA-----------------ACTACACGACAGCCACAACAGGTGAGTAAAGAGTCAGAGT-------C-----------------------------------------AGTAGTAGTAGTC------------GA------AGTAGA-------------------------------------AGAAGAAGAAG-AAGAAGAAGAAG-----------------------------------------------------------------------------GCAACCGTGTCCA-CAACAAGGTGAACCACCAACCAGCAGTG----------------CACACCACGCCCTC-----GA-----CA--------------------------------------------------------------------------------------------------------------------------------------------------ACAATAT------------------CAAAATTCAAAAATGCTAATTGTCCT-------------CGT-T---------C---TC---CTTTTTTTTTTTT-----CTTC-CTCC-----ATTCCCCC---CGTTTTT-------------------------------GCCCCGTTTTGTT----------------------------------------------GCC-A-------------------------------------------------------------------------------------------------------------------------ACAATTCAGGTTCATTTCCG-CCCAGT-------------------------CCAGCCGATAG-------C---GGTGTATCCGA----T--GTGG---ATAGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................................................................................AAGAAG-AAGAAGAAGAAG-----------------------------------------------------------------------------GCAACCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000
..................................................................................................................................................................................GA-------------------------------------AGAAGAAGAAG-AAGAAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
droVir3
CGGCTCAATCCACAA----TCCACATC--ACAGAA-----------------ATTACACGACGGCCACAACAGGTGAGTGC--------------CAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA----GCTTGCTTGCCAGCAAGGTGAACCAC--------AGTG----------------CACA---CGCCCTT-----TG-----------TTGAGCG----------ACATGCCCCAAAAAATAAGAAGCAGAAAATAGAAGGCAT----------------------------------------------------------------------------------------------------------------TGG--C--AACTTGT------------------------------------------------TAATCTTGACC-----CATT-C--------ACT-------------------------------------------------GCATG---------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------------ACAGGTTCATTTCCG-CCCAGT-------------------------CCGGCGGATAG-------C---GGTGTGTCCGA----C--GTGG---ACAGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCG-CCCAGT-------------------------CCGGCGGATAG-------C---GGTGTGT.......................2811.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
TGGTTCAATTCACAA----TCCACATC--ACAGAA-----------------ATTACACGACGGCTACAACAGGTGAGTGC---------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCGGCAAGGTGAACCAC----------TG----------------CACA---CGCCCTTTTTCTTGCTGAATTGT-----ATTG----------GCATGGCCCA--------------------------------------------------------------------------------------------------------------------GCATT--------------------TGG--C--AACTTGT------------------------------------------------TAATCTTGGCC-----CATT-CTC------GCTGCTCT---CG-----------------------------------------TTT---------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------------GCAGGTTCATTTCCG-CCCAGT-------------------------CCCGCGGACAG-------C---GGCGTCTCCGA----C--GTCG---ACAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCCG-CCCAGT-------------------------CCCGCGGACAG-------C---..............................2511.001100000
droGri2
CAAAGAAATCTAAAT----T-TAAAGG--ACAAAA-----------------GC--------AGCCAAAGCAAATAC----CGCAACAACAA-------C-----------------------------------------AACAACAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACCGCAGCAGCAACAACAACAAC----------AA----------------TTGA---TGACGTC-----GA-----TTGCAGCGGTGCC----------AA----------------------------------------CACCAGCAACAAACAACAGCA---ACA--------------------------------------------------------ATAATAA------------------CAATAGCAGCAATAGCGCATTGGCCG-------------CAT-T---------G---CA---A----GATG---G-----CAGC-GTT------GCTGCCGC---TG-CCGCTGCTGATTTTTACCAGCAATTAGCAGCAGCA------------------------------------------------GCAGCAACAACAACAA-------------------------------------------------------------------------------------------------------------------------ACACGAGCGCAACAGGCAAC-GGCAGC-------------------------AGCAACAACAG-------C---AGCGCAGCAGC----T--GC-A---GCAGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCAAC-GGCAGC-------------------------AGCAACAACA..........................................2511.00101
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC-------------------------AGCAACAACAG-------C---AGCG..........................19170.06110
dp5
CGGCGCCATCCACAA----TCCACATC--ACAGGA-----------------ACTACACGACGGCCACAACAGGTGAGTGG---------------AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------------AGGCGGCAAGGTGAACCAC----------TG----------------CACA---CGCCCTC-----GA-----CTCGATCCAAGCCGCATATACATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGATTGCTAATTGCCTTACTC------------TTCTACTTCTTTTCCTTTTCCTTTTTCTTTGC----------C---------------TT---CG----------ACT-TTGAC-TTCGTCCTCGTCCTCG------------------------------------------------TCCTCGTCTCCGCCGA-------------------------------------------------------------------------------------------------------------------------ATGGTGCAGGTTCATTTCCG-CCCAGT-------------------------CCCGCGGATAG-------C---GGCGTATCCGA----T--GTGG---ACAGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................GA-----------------ACTACACGACGGCCACAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
droPer2
CGGCGCCATCCACAA----TCCACATC--ACAGGA-----------------ACTACACGACGGCCACAACAGGTGAGTGG---------------AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G-------------AGGCGGCAAGGTGAACCAC----------TG----------------CACA---CGCCCTC-----GA-----CTCGATCCAAGCCGCATATACATAT-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGATTGCTAATTGCCTTACTC------------TTCTACTTCTTTTTCTTTTCCTTTTTCTTTGC----------C---------------TT---CG----------ACT-TTGAC-TTCGTCCTCGTCCTCG------------------------------------------------TCCTCGTCTCCGCCGA-------------------------------------------------------------------------------------------------------------------------ATGGTGCAGGTTCATTTCCG-CCCAGT-------------------------CCCGCGGATAG-------C---GGCGTATCCGA----T--GTGG---ACAGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................CCAC----------TG----------------CACA---CGCCCTC-----GA-----CTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
......................................................TACACGACGGCCACAACA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
droAna3
AGGCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTGTCCAGCCGCAAGGTGAACCAC----------TGCAACACTGAGCCACTGAACA---CGCCCTC-----GA-----CTCGACTCGAACC----------AC-----TTC------------------------------------------------------------------------------------------------------------------G--------------------------------ATTGATTGCTAATT------------------------------------------------TCGCTCCGTTTCGTC-CTC------G------------------------------------------------ATCCCGTT---------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------GCAGGTTCATTTCCG-CCCAGT-------------------------CCCGCGGACAG-------T---GGCGTCTCCGA----T--GTGG---ACAGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................CTGAGCCACTGAACA---CGCCCTC-----....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
droBip1
TGGCTCCATCCACAA----TCCGCACC--ACAGAA-----------------ACTACACGACGGCCACAACAGGTGAGTAC---------------A-----------------------------------------------------------------------------------------------------------------------------CTGAGATAAATTCTTAAAGGCAATTGATAATACTAGTTTAAAATTATCGAATGCCTTTAAGTCTCATATTTTTGCTGAGTGCATTCAGCTCGAGAGGCAAGCGTGTCCAGCCGCAAGGTGAACCAC----------TGCAACACTGAGCCACTGCACA---CGCCCTC-----GA-----CTCGATTCGAACC----------AC-----------------------------------------------------------------------------------------------------------------------------------------------------------TTCGATTGCTAATTGCCC-------------------------------------C-GTTT------------CGTC-CTCGGTTGCCCTTCGCA----ATCTCG-------------------------------ATCCCGTT---------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------GCAGGTTCATTTCCG-CCCAGT-------------------------CCCGCAGACAG-------T---GGCGTCTCCGA----T--GTGG---ATAGCSizeHit CountTotal NormTotal
No Reads
droKik1
CTATCCGCCCCACCA----TCCCTATCCGGCAGCA-----------------GCTCCA-----------GCAGCAGCT----CCGGCAG----------------------CTCACCGCTGTACGGCTC-----C-GGATCCGCTTCCGCGGTA--------GCCGCGGGCAAGGCGCCC-ATG----------------------------------------------------------------------------------------AAGC--------TGGA------------------------------GCTACCATATCCG-C---------------------------------------------------AGGCCTCATCCAC--------------------------CGGCACCGCTTCGCCC---------------------------------------------------------------------------------------------------------AACTCCAGCATC-----------------------------------CAGTCGGCG----------CCCTCATC--------------------------CGCCTCCGTTTCGCCCAGCATCTTCCCCTCG-------------------------------------------------CC--------------------------------------------------CGCCCA-------------------------------------------------------------------------------------------------------------------------ATCCTTTGCCTCCATATCCG-C-CAGTCCCTCGACACCCACAACGTCC-----------GCCA-------T---GGCGGCACCAACGGGA--GCGGGTACAGGTSizeHit CountTotal NormTotal
No Reads
droFic1
GACAACC-----------------------------------------------------------ACAGCAGAGAAAAAA--------------TAAAC-----------------------------------------AACAGTAGTAAGC------------CA------CATAAA-------------------------------------A--------------------------------------------------------------------------------------------------------GAATATTTAACATCAAGA----------------------------------------------------------------------------------------------------------------------AAGCGCCAACAGC--CACCAAACCAAACCAAACCAAATCAAACCAACACCAACATTTATTTGCTACTCC--AAGACCTCTGAACTAAAGCCAATTAACTCAT----------------------CAGCA-----------------------ATATTATTT---------C---TCC--TCTTCTTTTTTGT-----TTTC-TTT------ATTCCGCC---CGACTTT-------------------------------GTGT------------------------------------------------------------------GT------------------------CCCGATGAA--------------------------------------------------------------------------------TCCCGATTTTAGTTGGCAAC-ATCCGT-------------------------TTGAGTAACAG-------C---GCCGAGTCCAT----TCAGTAC---GCAGCSizeHit CountTotal NormTotal
No Reads
droEle1
TGCTGTGACCTTAGCCAGTCTAAGCGA--GATAGC--C--------------ACTGCACGCCAACAGCAGCAGCAGCAGTT-GCTGGCG---CTG-CAGCAGCAACAGCAAC---------AGAAACTGCCCAGAAGGATAATAAACTTTGGCAGCAACCATACTGCCAATACTGCCACCAAAGGATTGGGAGCTGGAGCAGTAGTGG------------------------------------------------------------------------------------------------------------------GCATGGCCA-CAGCAA----------------------------------------------------------------------------------------------------------------------------------------------TGGCAACAGCAACAGCAACGGCAACAGCAACACCTGGACGCAATCGCCAACTGGGCCTGAGTGAGGGTCAAGTGGCGAATGGTAAGCAGAAAGAATTGT--G--AGCC-----------TTGTGTTTGCGATAACGTTT---------G---TG----------TCCCTCCATTTCCCCC----------TTCCACCTCTCCTCC--------CC-TAA---------------------------ACGTTGCTAGCCAGGTCA----------------------GCAGTGCG------------------------------------------------------------------------------------------------------------------------------------------------------T-CTGCTCAACGGCAACTGTTGCGGCCGATTGCAGGCAACAG-------C---AGCAA--CAGG----G--GCCG---GCAGCSizeHit CountTotal NormTotal
No Reads
droRho1
GATAATCAACTTTGG----CAGCAACC--ATGCTG-----------------CCAACACTGCCACCAAAGGATTGGGA------------------------------------------------------------------------------------------------------------------GCTGGAGCTGGAATGG------------------------------------------------------------------------------------------------------------------GCATGGCCA-CAGCAA----------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAACTACGGCAACAGCAACAGCAACACCTGGACGCAATCGCCAACTGGGCCTGAGTCAGGGTCAAGTGGCGAATGGTAAGCAGAAAGAATTGT--G--AGCC-----------TTGTGTTTGCGATAACGTTT---------G---TGT-------CCATCCCC-----CTTC-CCC------CACCCACC---CCTCCCC-------------------------------ATA-----ACGTTGCCAGCCAGG-------------------------ACAGTGCG------------------------------------------------------------------------------------------------------------------------------------------------------T-CTGCTCAACGGCAACTGTTGCGGCCGATTGCAGGCGATAG-------C---AGCAA--CAGG----G--GCCG---GCAGCSizeHit CountTotal NormTotal
No Reads
droBia1
CAGCAACAACAACAA----CACCAACA--ACACTA-----------------TCAGCAA----------------------------------------------------CATGCCATCCAACAACAGGCTAGCAAAATCTCATATCGTGGCATTTTCACCACCACAGGCAACGCAATGAATG----------------------------------------------------------------------------------------------------------------------------------------------------------------CAGC----------AG----------------CAGC---CGCCGCA-----GC-----AGCGGCC-----------------------------------------------------------------------CAGCAGCAACAGCAG------CAGCAGCAACATCAGC-----------------------ACCAGCAGCAACTTC-----------------------------------------------------------------------------------------------------------------------------CCTCCCC-------------------------------GCA-----AC-------------TGGGCGTTCTGGCCGGG---------------------------------------------------------------------------------------------------------------------------------------------------CCAATGTCACCGCCCTCG-AACAGT-------------------------TTGGGCAACAG-------TTGGGGTCTACCCAGTCCGG--ACAAGACCATGTSizeHit CountTotal NormTotal
No Reads
droTak1
AGGCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTGTCCGGCAGCAAGGTGAACCAC----------TG----------------CACA---CGCCCTC-----GA-----CTCGATTCGAGCC----------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGATTGCTAATAGCCC-------------------------------------C-TTTTCTTGGCT-----CGTC-CTC------GCTCCGCG---CCGCCCT-------------------------------ATCCCGTT---------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------------GCAGGTTCATTTCCG-CCCAGT-------------------------CCCGCGGACAG-------C---GGCGTCTCCGA----C--GTGG---ACAGCSizeHit CountTotal NormTotal
No Reads
droEug1
AGGCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTGTCCAATAGCAAGGTGAACCAC----------TG----------------CACA---CGCCCTC-----GA-----CTCAATTCGAGCC----------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGATTGCTAATTGCCC-------------------------------------CTTTTTCTTGGCT-----CGTC-CTC------GCTCCGCA---TCGCCAT-------------------------------GTCCCGTT---------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------------GCAGGTTCATTTCCG-CCCAGT-------------------------CCCGCCGACAG-------C---GGCGTCTCCGA----C--GTGG---ACAGCSizeHit CountTotal NormTotal
No Reads
dm3
CGCTGCCACCCACAACGGTTTCATTTC--ATCAGC-----------------CCAACACGCCCACCTCAACAGCGGCA------------------------------------------------------------------------------------------------------------------TCAGTGGCTTCAATGAGCCAGGACAAGATGCTGGCA-AAAAACGGTAAGTTGATTTATACCATTAGTGAACAAGAATTAGAAAT--------TGGA------------------------------TTTATTGG-----------------TCCAT----------TA----------------CTCA---CAC---------GA-----TG---------------------GCATAACAAAGTCC---------------------------------------------------------------------------------------------------------AAGTCAATTATAT-----------------------------------------------------------------------------------------------------------------------------------------T-TGA---------------------------ATGTACAA---AAGATAATTGTTGTGGCCTTTCGTAATAACCTTTACCTCCAACATTTGTAGGC---------------------------------------------------------------------------------------------------------------------------TACAATGCGC-CCTGGT-------------------------TCAAGCTGTTG---CCGCA---TATGACGCCAA----T--GAGC---AAGGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................CACGCCCACCTCAACAGCGGCA------------------------------------------------------------------------------------------------------------------TCAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2718.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................CCTCAACAGCGGCA------------------------------------------------------------------------------------------------------------------TCAGTGGCTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2517.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TC--ATCAGC-----------------CCAACACGCCCACCTCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................AACAGCGGCA------------------------------------------------------------------------------------------------------------------TCAGTGGCTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................CAGGACAAGATGCTGGCA-AAAAACGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------TCAAGCTGTTG---CCGCA---TATGACG.......................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-CCTGGT-------------------------TCAAGCTGTTG---CCGCA---..............................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GC-----------------CCAACACGCCCACCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................GACAAGATGCTGGCA-AAAAACGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................TCAATGAGCCAGGACAAGATGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................TGAGCCAGGACAAGATGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...........................................................................................................................................................................................................AATGAGCCAGGACAAGATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000010000
............................................................................CA------------------------------------------------------------------------------------------------------------------TCAGTGGCTTCAATGAGCCAGGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG---CCGCA---TATGACGCCAA----T--GAGC---AAG..2712.0020000000000000000000000000000000000000010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAATGCGC-CCTGGT-------------------------TCAAGCTGT...........................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............................................................ACCTCAACAGCGGCA------------------------------------------------------------------------------------------------------------------TCAGTGGCTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-CCTGGT-------------------------TCAAGCTGTTG---CCG...................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
.........................TC--ATCAGC-----------------CCAACACGCCCACCTCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................TCAATGAGCCAGGACAAGATGCTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000
........................................................................................................................................................................................................................AAGATGCTGGCA-AAAAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ACGGTTTCATTTC--ATCAGC-----------------CCAACACGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................TCAATGAGCCAGGACAAGATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---CCGCA---TATGACGCCAA----T--GAGC---AAGA.2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TTCATTTC--ATCAGC-----------------CCAACACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGC-CCTGGT-------------------------TCAAGCTGTTG---CC....................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCTGTTG---CCGCA---TATGAC........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TCAACAGCGGCA------------------------------------------------------------------------------------------------------------------TCAGTGGCTTCAATG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGC-CCTGGT-------------------------TCAAGCTGTT..........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................CCAGGACAAGATGCTGGCA-AAAAACGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---TATGACGCCAA----T--GAGC---AAG..2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CA------------------------------------------------------------------------------------------------------------------TCAGTGGCTTCAATGAGCCAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................AATGAGCCAGGACAAGATGCTGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................AACAGCGGCA------------------------------------------------------------------------------------------------------------------TCAGTGGCTTCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..........................................................CGCCCACCTCAACAGCGGCA------------------------------------------------------------------------------------------------------------------TCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGTTG---CCGCA---TATGA.........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................TGCTGGCA-AAAAACGGTAAGTTGATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................AGCCAGGACAAGATGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGT-------------------------TCAAGCTGTTG---CCGC..................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACCTCCAACATTTGTAG...........................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................CAATGAGCCAGGACAAGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
....................................................................AACAGCGGCA------------------------------------------------------------------------------------------------------------------TCAGTGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............................................................................................................................................................................................................GAGCCAGGACAAGATGCTGGCA-AA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGT-------------------------TCAAGCTGTTG---CCGCA---TATGACG.......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGT-------------------------TCAAGCTGTTG---CCGCA---..............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................TCAACAGCGGCA------------------------------------------------------------------------------------------------------------------TCAGTGGCTTCAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---CCGCA---TATGACGCCAA----T--GAGC---AAG..2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGT-------------------------TCAAGCTGTTG---CCGCA---..............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................CCAACACGCCCACCTCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGC-CCTGGT-------------------------TCAAGCTGTTG---CCGCA---..............................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---CCGCA---TATGACGCCAA----T--GAGC---AAGG.2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................AGGACAAGATGCTGGCA-AA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................CCAGGACAAGATGCTGGCA-AAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................CAATGAGCCAGGACAAGATGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................................................................................................................................................................................................................AGATGCTGGCA-AAAAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................................AGTGGCTTCAATGAGCCAGGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TTC--ATCAGC-----------------CCAACACGCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---AAGATAATTGTTGTGGCCT...........................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................AATGAGCCAGGACAAGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................AATGAGCCAGGACAAGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................................................................GCCAGGACAAGATGCTGGCA-AAAAACGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GTTTCATTTC--ATCAGC-----------------CCAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TTCATTTC--ATCAGC-----------------CCAACACGCCCACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................TTCAATGAGCCAGGACAAGATGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................GCA------------------------------------------------------------------------------------------------------------------TCAGTGGCTTCAATGAGCCAGGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGCGC-CCTGGT-------------------------TCAAGCTGTTG---CC....................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TCAACAGCGGCA------------------------------------------------------------------------------------------------------------------TCAGTGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGC-CCTGGT-------------------------TCAAGCTGTTG---CCGC..................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................TTCAATGAGCCAGGACAAGATGCTGGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---TATGACGCCAA----T--GAGC---A....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................ACACGCCCACCTCAACAGCGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CCGCA---TATGACGCCAA----T--GAGC---A....2311.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................TTCAATGAGCCAGGACAAGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................CAATGAGCCAGGACAAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGACGCCAA----T--GAGC---AAG..1911.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGT-------------------------TCAAGCTGTTG---CCG...................................2011.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGC-CCTGGT-------------------------TCAAGCTGTTG---CCGC..................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CGCTGCCACCCACAACGGTTTCATTTC--ATCAGC-----------------CCAACACGCCCACCTCAACAGCGGCA------------------------------------------------------------------------------------------------------------------TCAGTGGCTTCAATGAGCCAGGACAAGATGCTGGCA-AAAAACGGTAAGTTGATTGAGGCCATTAGTGA-CAAGAGTTAGAATT--------TAGA------------------------------TTTATTGG-----------------TTCAT----------TA----------------CTCA---CTCACAC-----GA-----TA---------------------GCATAACAAAGTCC---------------------------------------------------------------------------------------------------------A-------------------------------------TTTAATTCAAAATCGTTC-------------------------------------T-ATTTA-------------------------------------------------TT-TAA---------------------------ATGTAGAA---AAGATAATTATTGTGTCCTTT--TAATAACCTTTGCTTCCAATATTTGTAGGC---------------------------------------------------------------------------------------------------------------------------TACAATACGC-CCTGGT-------------------------TCAAGCTGTTG---CCGCA---TATGACGCCTA----T--GAGC---AAGGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................AGCCAGGACAAGATGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00202000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCCTA----T--GAGC---AAGA.1711.00100000010000000000
...................................................................................................................................................................................................................AGGACAAGATGCTGGCA-AAAAACGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
.........................................................ACGCCCACCTCAACAGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGC-CCTGGT-------------------------TCAAGCT.............................................1611.00100000001000000000
.............................................................................A------------------------------------------------------------------------------------------------------------------TCAGTGGCTTCAATGAGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---TATGACGCCTA----T--GAGC---A....1811.00100000000001000000
.............................................................................A------------------------------------------------------------------------------------------------------------------TCAGTGGCTTCAATGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGC-CCTGGT-------------------------TCAAGCTGTTG---CCGCA---..............................2611.00101000000000000000
droSec2
AGGCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTGTCCAGCAGCAAGGTGGACCAC----------TG----------------CACA---CGCCCTC-----GA-----CTCTATTCGAGCC----------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGATTGCTAATTGCCC-------------------------------------C-TTTTCTTGGCT-----CGTC-CTC------GCTCCGCG---CGGCTCT-------------------------------ACCCCGTT---------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------------GCAGGTTCATTTCCG-CCCAGT-------------------------CCCGCGGACAG-------C---GGCGTCTCCGA----C--GTGG---ACAGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AT-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGATTGCTAATTGCCC-------------------------------------C-................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
.........................................................................................................................................................................................................................................................................................................................................CAGCAGCAAGGTGGACCAC----------T........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
droYak3
TGGTGAGCAGTGCCA----GCCAACCC--ATACTCTCGCCCGCCAAACAGCAGCTAC--------CGCAACAGATCTATGT---G--A-------CCAGC-----------------------------------------AATGGTAGTACAA------------CA------GCCAGC-------------------------------------G---GAGGA---ACCATCTACAAGGCAGCCAGC-------------------------------------------------CAG-------------GCA----CTTAGCTCGCCAA-------------------------------------------------------------------------C-----------------------------------------------------------------------CACCAGCAGCAGCAG------CAGTAGCAACACCACCACCCAC----CATCCG---------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------ACA-----AG-------------A---------------------------------------A--------GTATCTGCGCGAAAAGATGCACGTCCAGATGGATCATAGTAGTCACGTGGCCTCAACTGTTACGGTGGTCAGTTCGCCGGCCTCCTCGAACAATTCCTCGATTAGCAGCTCCAATA--CTGGCTCCGTATCCGGTTCGGG-------------------------ATCCTCGACAGCGGC---------TGTGAATGG----T--GGCA---ATAG-SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................AGCTAC--------CGCAACAGATCTATGT---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--CTGGCTCCGTATCCGGTTCGGG-------------------------ATCCT...............................................2811.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCACGTGGCCTCAACTGTTACGGT.......................................................................................................................................................2511.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAAAGATGCACGTCCAGATGGAT.......................................................................................................................................................................................2511.00100000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAG------CAGTAGCAACACCACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-----AG-------------A---------------------------------------A--------GTATCTGCGCGAAAA..........................................................................................................................................................................................................2111.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACCACCACCCAC----CATCCG---------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------A................................................................................................................................................................................................................................................................................................2311.00101000000000
.......................................CCGCCAAACAGCAGCTAC--------CGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCACGTCCAGATGGAT.......................................................................................................................................................................................1911.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGTGGCCTCAACTGTTACGGTGGTC...................................................................................................................................................2711.00101000000000
.............................................................................................................................................................................................................................................................................................................................................AA-------------------------------------------------------------------------C-----------------------------------------------------------------------CACCAGCAGCAGCAG------CAGTAGCAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATTCCTCGATTAGCAGC............................................................................................................2011.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATTCCTCGATTAGCAGCTCC.........................................................................................................2311.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGGTTCGGG-------------------------ATCCTCGACAGC........................................2411.00100000010000
....................................................................................................................................................GTACAA------------CA------GCCAGC-------------------------------------G---GAGGA---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGACAGCGGC---------TGTGAATGG----T--GGC.........2611.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCACGTCCAGATGGATCATA...................................................................................................................................................................................2311.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCAACTGTTACGGTG......................................................................................................................................................1811.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGATGCACGTCCAGATGGAT.......................................................................................................................................................................................2211.00100000010000
....................................................................................................................................................GTACAA------------CA------GCCAGC-------------------------------------G---GAGGA---ACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
....................................................................................................................................................GTACAA------------CA------GCCAGC-------------------------------------G---GAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCGAAAAGATGCACGTCC...............................................................................................................................................................................................2011.00101000000000
.............CA----GCCAACCC--ATACTCTCGCCCGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.......................................................................................................................................................CAA------------CA------GCCAGC-------------------------------------G---GAGGA---ACCATCTAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGTCCAGATGGATCAT....................................................................................................................................................................................1911.00101000000000
............................................................................................................................................................................................................................................................................................................AG-------------GCA----CTTAGCTCGCCAA-------------------------------------------------------------------------C-----------------------------------------------------------------------CACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGCGCGAAAAGATGCACGTCC...............................................................................................................................................................................................2411.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTTCGGG-------------------------ATCCTCGAC...........................................1811.00110000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACGTCCAGATGGATCATAGT.................................................................................................................................................................................2211.00100000010000
...........................................................................CTATGT---G--A-------CCAGC-----------------------------------------AATGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTCGACAGCGGC---------TGTGAATGG----T--............2511.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGATGGATCATAGTAGTC.............................................................................................................................................................................2011.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCGGG-------------------------ATCCTCGACAGCGGC---------............................2311.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGATGCACGTCCAGATGGAT.......................................................................................................................................................................................2311.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCGGCCTCCTCGAACA.............................................................................................................................1911.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATTCCTCGATTAGCA..............................................................................................................1911.00101000000000
droEre2
AGGCGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGTGTCCAGCAGCAAGGTGAACCAC----------TG----------------CACA---CGCCCTC-----GA-----CTCGATTCGAGCC----------AT-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCGATTGCTAATAGCCC-------------------------------------CTTTTTCTTGGCT-----CGTC-CTC------GCTCCGCG---CGGCTCT-------------------------------ATCCCGTT---------------------------------------------------------C----------------------------------------------------------------------------------------------------------------------------GCAGGTTCATTTCCG-CCCAGT-------------------------CCCGCGGACAG-------C---GGCGTCTCCGA----C--GTGG---ACAGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 03:08 AM