dwi_1921

exon [dwil_GLEANR_12914:1]; CDS [Dwil\GK12617-cds]; CDS [Dwil\GK12617-cds]; exon [dwil_GLEANR_12914:2]; intron [Dwil\GK12617-in]

-----------------------------------###############---------------------------------------------------------------------------------------------------------------------------------------################################################## AAAGTGTATTTCCCCTATACTATAATAAACTCATCATGGACGCAGAAGATGTAAGTGACAATTGAAAAAAGGGAAAGTTTAGAATCCGCATCCAGACCTCCTGGTCCCCCAAATTTATAAAGAAAAAATTGAGGTTATGGTTATGGTTTTTATATGTCACATATGTGTCAACTTTGTTTCCTTAGGGCTTTGATCCCACTTTACTGAAAAAGAAGAAGAAGAAGAAGACCACTTT ************************************************...................(((((((...(((((.(((...(((((((((.(((....)))...................)))))).)))...))).)))))..((.(((....))).))......)))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V118 embryo	M045 female body	V117 male body	M020 head	V119 head
........................................................................................................................................................................................................TTACTGAAAAAGAAGAAGAAGAAGA..........	25	0	1	2.00	2	1	0	1	0	0
...............................................................................................................................ATTGAGGTTATGGTTATGG.........................................................................................	19	0	1	1.00	1	1	0	0	0	0
...............................CATCATGGACGCAGAAGATGGC......................................................................................................................................................................................	22	2	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................GAAGAAGAAGAAGAAGACCACTTT	24	0	1	1.00	1	0	0	1	0	0
.......................AATAAACTCATCATGGACGCAGAAGAT.........................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0
................ATACTATAATAAACTCATCATGGACGC................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0
..................ACTATAATAAACTCATCATGGACGC................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
................................ATCATGGACGCAGAAGATGGC......................................................................................................................................................................................	21	2	1	1.00	1	0	0	0	1	0
...........................AACTCATCATGGACGCAGA.............................................................................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0
..............................TCATCATGGACGCAAAAGAT.........................................................................................................................................................................................	20	1	1	1.00	1	1	0	0	0	0
...............................................................................................................................................................................GTTTCCTGAAGGCTGTGATC........................................	20	3	4	0.75	3	0	0	0	3	0
..................................CATGGACGCAGAAGATGGCT.....................................................................................................................................................................................	20	3	5	0.40	2	1	1	0	0	0
.........................................................................................ATCCAGACCTCCTTCTCCGCCA............................................................................................................................	22	3	3	0.33	1	0	1	0	0	0
................................ATGAAGGACGCAGAAGATATA......................................................................................................................................................................................	21	3	4	0.25	1	0	0	1	0	0
...................................ATTGACGCCGAAGATATAAG....................................................................................................................................................................................	20	3	6	0.17	1	0	0	1	0	0
..................................................................................................................................GAGGTAATGGTTATGGCT.......................................................................................	18	2	14	0.14	2	0	2	0	0	0
...........................................AGAAGATGCAGGTGACAAT.............................................................................................................................................................................	19	2	9	0.11	1	0	0	0	0	1
.............................................................................................................................................................................................................GAAAAAGAAGAAGAAGAAGA..........	20	0	10	0.10	1	0	0	1	0	0
.............................................................................................................................................................................................................GAAAAAGAAGAAGAAGAA............	18	0	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................AAAAGAAGAAGAAGAAGA..........	18	0	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................AAGAAGAAGAAGAAGAAGA.......	19	0	20	0.05	1	0	0	1	0	0

TTTCACATAAAGGGGATATGATATTATTTGAGTAGTACCTGCGTCTTCTACATTCACTGTTAACTTTTTTCCCTTTCAAATCTTAGGCGTAGGTCTGGAGGACCAGGGGGTTTAAATATTTCTTTTTTAACTCCAATACCAATACCAAAAATATACAGTGTATACACAGTTGAAACAAAGGAATCCCGAAACTAGGGTGAAATGACTTTTTCTTCTTCTTCTTCTTCTGGTGAAA ************************************************...................(((((((...(((((.(((...(((((((((.(((....)))...................)))))).)))...))).)))))..((.(((....))).))......)))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body
..........................................................................................AGGTCTCGATGCCCAGGG...............................................................................................................................	18	3	20	0.05	1	1

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004729:1582130-1582364 +	dwi_1921	AAAGTGTATTTCCCCTATACTA---------T-AATAAACTCATCATGGACGCAGAAGATGTAAGTGAC--AATT----------------------GAAAAAAG-GGAAAGT----------------T------TAGAATCCGCATCCAGACC-----TCCTGGTCCCCC---------------------------------------AAATTTATA-----------AA---GAAAAA---AT----TGAGGTTATGGTTATGGTTTT------------------------------------------------------T-----ATATGTC-ACAT--ATGTGTCAA-CT---T------TGTTTCCTTAGGGCTTTGATCCCACTTTACTGAAAAAGAAGAAGAAGAAGAAGACCACTTT
droVir3	scaffold_13049:19314991-19315044 +		T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGGGTTTCGACCCCACTTTGTTAAAAAAGAAGAAGAAGAAGAAGACCACTTT
droMoj3	scaffold_6680:7049455-7049508 +		T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGGGGTTCGATCCTACTTTGTTGAAGAAGAAAAAGAAGAAGAAGACCACATT
droGri2	scaffold_15110:17000001-17000298 +		TCTTT----GTTCAGTTAA----------TAAAAAATAATCTATTATGGAAGGTGAAGACGTAAGTGTT--AATACAA--GTG-----TT-------------------------------------------------------------------------------GCAAT-G----CAAGTGTT-------AGTCACATTTGCGTCCAAATTAGAGTG--TACATT------GTGAATTCCAATGTGTGAGGTTATGTTGTCCAAATGAGGCTCCATTCACCAGGCATTTACCCACACACCCACCCAGTTGTATTTCATGTGCGAACCGTG-TTA-AACA--AT-TTGTGC-TT---TCAATATGTTTTTTTTAGGGTTTTGATCCCAGTTTATTGAAAAAGAAGAAGAAGAAGAAGACCACTTT
dp5	XR_group6:3302049-3302348 -		AAAGT----TTAAAGCTAAGTT-TAACCTACA-ACTATAAGAACAATGGATGCGGAAGACGTAAGTATT--GTTAATGCAGTAGAAAGATGCATTGTACT--AACGA---TTCTTGGGT--AAACGCAC-------A------GGCATATGTGTGATGTATACATGTGCACACCCG---------------ATGCACACATATTTATGTACATATTTGCGTGTGAATTCT------GCGAAC---AATGGTTGAGGTTATGTTAATA-------------------------------------------------------------------------AATAATTATTAATGG-AA---TTATTTCATTTTATTTAGGGTTTTGATCCCACTTTGTTGAAAAAGAAGAAGAAGAAGAAGACCACCTT
droPer2	scaffold_9:1599019-1599077 -		T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTAGGGTTTTGATCCCACTTTGTTGAAAAAGAAGAAGAAGAAGAAGACAACCTT
droAna3	scaffold_13337:12567519-12567637 -		AAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATA---AT----TGAGGTTATGTTGGCCTGGCC------------------------------------------------------C-----AAATGCC-TAAT--TTCTAAATA-TT---TC--GCT-TTTTTAACAGGGTTTTGATCCCACTCTGCTGAAAAAGAAGAAGAAGAAGAAGACTACCTT
droBip1	scf7180000396589:1421124-1421255 +		ATTT---A-----------------------------------CAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT-GGCTAAGAAGA---GT----TGAGGTTATGTTGGCCCGTCC------------------------------------------------------C-----AAATGCT-GAAT--TTAAAAATA-TT---C---TGCTTTTTCAACAGGGTTTCGATCCCACTTTGCTGAAAAAGAAGAAGAAGAAGAAGACCACCTT
droKik1	scf7180000302272:128309-128598 -		GCCG-----------------AGTATTTATAA-AGCGAAATCACAATGGACGCGGAAGACGTAAGTTATTTACCAACG--CAG---ACAAACACTTTCCC--CGCGAGAAATCCTGGCCTAGAATGCGA-------G------TACATACGTATGTCTTCTACATGTGCGCACT-----------------GTATGTGTATGTGTATTTACATATTTTTGTATGAAAACT------GCGAAA---AA----TGAGGTTATGTTGGCCTAATC------------------------------------------------------C-----GGATTTT-AAC-----ACCGATT-TT---TT--ATTTAATTTTGCAGGGTTTTGATCCCACTTTGCTGAAAAAGAAGAAGAAGAAGAAGACCACCTT
droFic1	scf7180000453839:512966-513023 +		-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCGCAGGGTTTCGATCCCACTTTGTTAAAAAAGAAGAAGAAGAAGAAGACCACCTT
droEle1	scf7180000491255:892277-892572 -		ACAG-----------------AGTATTAAAAA-AGCATAAACACAATGGACGCAGAAGACGTAAGTTGG--AAAAACA--CCG---GGGCATAAGTTTAAAATGCTTGAAAAC----------------AT-CCTGGAAAGCGCACATATGTGCG-----TACATGTGCGCTCTTGTGTG----------TGTGTGTGTATGTGTATTTACCTGTTTGTGTATGAGCACTTGG---GCGAAC---AA----TGAGGTTATGTTTTACCTATC------------------------------------------------------C-----GGATTTCTAACC--ATTCCGAATCTT---GC--AATGAATTCTACAGGGTTTCGATCCCACTTTGTTGAAAAAGAAGAAGAAGAAGAAGACCACCTT
droRho1	scf7180000766291:32837-33113 +		AAA----------------------------G-AGCCCTAACACAATGGACGCAGAAGACGTAAGTTCG--AAAAACA--CTG---GGGTGAACGTTG-AAATGGGTAAAAAC----------------TC-CTTGAAAAGCACACATATGCGCG-----TGCATGTGCGCCCTTC----------------TGTGTGTATGTGTATTTACCTGTTTGGATACGAGCTCT-GG---GCGAAC---AA----TGAGGTTATGTTGTCTCTATC------------------------------------------------------C-----GGATTTCTGACC--GTTCCGAATTTT---CC--AATGGATTCCACAGGGTTTCGATCCCACTTTGATGAAAAAGAAGAAGAAGAAGAAGACCACCTT
droBia1	scf7180000302334:1363401-1363514 -		A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC---AA----TGAGGTTATGTTTTTGCGATC------------------------------------------------------C-----GGATTTA--ACC--ATACCGACT-TT---CT--CATGAATTCCGCAGGGTTTCGATCCCACTTTGTTGAAAAAGAAGAAGAAGAAGAAGACCACCTT
droTak1	scf7180000415103:307607-307892 -		AACT-----------------AGTATTTAAAA-GGCATAAACACAATGGACGCGGAAGACGTAAGTTCG--AAAAACA--ACA---GGAAGCACTTTTAGAAGGG-GGAAAAC----------------TCCGCAAGAAAATTCGCATATGTCCG-----TACATGTGCGCCCCTG----------------TGTGTGTATGTGTATTTACCTGTTTGTGTATGAGCACT-AG---GCGGAC---AA----TGAGGTTATGTTTTCCTGATC------------------------------------------------------C-----GGATTTT-AG-C--TTACCGACT-TT---CC--CATGAATTCCACAGGGTTTCGATCCCACTTTGTTGAAAAAGAAGAAGAAGAAGAAGACCACCTT
droEug1	scf7180000409466:4612254-4612533 -		AA-------------------------------GGCCTAAACACAATGGACGCGGAAGACGTAAGTT----AAAAACA-ATCA---GGATGCACTTTTAAAATGTTCAAAAAC----------------TTGGCTGGAAAACTCGCATATGTCCG-----TACATGTGCGCCGTTGGG------------TGTGTGTGTATGTGTATTTACATATTTGTGTATGAGAACT-GG---GCGAAT---AA----TGAGGTTATGTTTTTCTTACC------------------------------------------------------C-----GGATTTT-A-CC--TTACTATTT-TTTGTTT--GTTAATTTTTACAGGGTTTTGATCCCACTTTGCTGAAAAAGAAGAAGAAGAAGAAGACCACCTT
dm3	chr3L:12519436-12519550 -		A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC---AT----TGAGGTTATGTTTGCTTGATC------------------------------------------------------C-----GGATTTA-AACC--ATATTGAAA-TT---CC--AATGATTTTCGCAGGGTTTTGATCCCACTTTGCTGAAAAAGAAGAAGAAGAAGAAGACCACGTT
droSim2	3l:12221234-12221542 -	dsi_23009	ATTA---ATTTCCAGTCAACTAGTATTCAAAC-AGCCCAGACACAATGGACGCGGAAGACGTAAGTTCC--CGGAACA--CCG---GCTAGTGCGCTGCAAATGC-GGAAAAC----------------TTGCGTGGAAAATTCGCATATTATCG-----TACATGTGCGCCCTTGTCTGCA--------TGTGTGTGTGTGTGTATTTACACATTTGTGTATGAGAACT-GG---GCGAAC---AT----TGAGGTTATGTTTGCTTGATC------------------------------------------------------C-----GGATTTA-AACC--ATATTGAAA-TT---CC--AATGATTTTCGCAGGGTTTTGATCCCACTTTGCTGAAAAAGAAGAAGAAGAAGAAGACCACGTT
droSec2	scaffold_0:4703572-4703880 -		ATTA---ATTTCCAGTCAACTAGTATTCAAAC-AGCCCAGACACAATGGACGCGGAAGACGTAAGTTCC--CGGAACA--CCG---GCTAGTGCGTTTCAAATGC-GGAAAAC----------------TTGCGTGGAAAATTCGCATATTAACG-----TACATGTGCGCCCTTGTCTGCA----------TGTGTGTGTGTGTATTTACACATTTGTGTATGAGAACT-GG---GCGAAC---AT----TGAGGTTATGTTTGCTTGATT----------------------------------------------------TGC-----GGATTTA-AACC--ATATTGAAA-TT---CC--AATGATTTTCGCAGGGTTTTGATCCCACTTTGCTGAAAAAGAAGAAGAAGAAGAAGACCACGTT
droYak3	3L:12580633-12580926 -		GA----------------------ATTCTAAA-AGCCCAAACACAATGGACGCGGAAGACGTAAGTTCC--AAAAACA--CCG---GGTTGTGCGTTTCAAATGC-GGAAAAC----------------TTGGCAAGAAAATTCGCATATGTCCG-----TACATGTGCGCCCTTGTTTGTG----TGTGCGTGTGTGTATGCGTATTTAAATGTTTGTGTATGAGAACT-GG---GCGAAC---AA----TGAGGTTATGTTTGCTTGATC------------------------------------------------------C-----GGATTTA-AACC--ATACCGAAA-TT---CC--AATGTTTTCCCCAGGGTTTTGATCCGACTTTGTTGAAAAAGAAGAAGAAGAAGAAGACCACCTT
droEre2	scaffold_4784:12521010-12521310 -		AACT-----------------AGTATTCTAAA-AGCCCAAACACAATGGACGCGGAAGACGTAAGTTCC--AGGAACA--CCG---GATTGTGTGCTTAAAATTA-TGAAAAC----------------TTGCCTGGAAAATTCGCATATGTGCG-----TACATGTGCGCCCTTGT--GTATGTGTGTGTGCGTGTGCATGTGTATTTACATGTTTGTGTATGAGAACT-GG---GCGAAC---AA----TGAGGTTATGTTTGCTTGATC------------------------------------------------------C-----GGATTTA-AACC--ATACCGAAA-TT---TC--AATGATTTTCACAGGGTTTTGATCCCACTTTGTTGAAAAAGAAGAAGAAGAAGAAGACCACCTT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

AAAGTGTATTTCCCCTATACTA---------T-AATAAACTCATCATGGACGCAGAAGATGTAAGTGAC--AATT----------------------GAAAAAAG-GGAAAGT----------------T------TAGAATCCGCATCCAGACC-----TCCTGGTCCCCC---------------------------------------AAATTTATA-----------AA---GAAAAA---AT----TGAGGTTATGGTTATGGTTTT------------------------------------------------------T-----ATATGTC-ACAT--ATGTGTCAA-CT---T------TGTTTCCTTAGGGCTTTGATCCCACTTTACTGAAAAAGAAGAAGAAGAAGAAGACCACTTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................................................................................................................................................................................................................................................................................................................................................TTACTGAAAAAGAAGAAGAAGAAGA..........	25	1	2.00	2	0	0	1	1	0
.....................................................................................................................................................................................................................................................AT----TGAGGTTATGGTTATGG.................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.........................................CATCATGGACGCAGAAGATGGC..............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAGAAGAAGACCACTTT	24	1	1.00	1	0	0	1	0	0
.................................AATAAACTCATCATGGACGCAGAAGAT.................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
................ATACTA---------T-AATAAACTCATCATGGACGC........................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
..................ACTA---------T-AATAAACTCATCATGGACGC........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..........................................ATCATGGACGCAGAAGATGGC..............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
.....................................AACTCATCATGGACGCAGA.....................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
............................................CATGGACGCAGAAGATGGCT.............................................................................................................................................................................................................................................................................................................................................................................	20	5	0.40	2	0	1	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGAAGAAGAAGAAGA..........	20	10	0.10	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGAAGAAGAAGAA............	18	20	0.05	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAAGAAGAAGAAGA..........	18	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGAAGAAGAAGAAGA.......	19	20	0.05	1	0	0	1	0	0

droVir3

T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGGGTTTCGACCCCACTTTGTTAAAAAAGAAGAAGAAGAAGAAGACCACTTT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAAGAAGAAGAAGAAGACC.....	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TAAAAAAGAAGAAGAAGAAGAAGACCAC...	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAAGAAGAAGAAGACCAC...	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAAGAAGAAGAAGAAG........	20	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3
...................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGAAGAAGAAGAAGAC......	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAGAAGAAGAC......	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGAAGAAGAAGAAGA.......	19	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGGGGTTCGATCCTACTTTGTTGAAGAAGAAAAAGAAGAAGAAGACCACATT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................TTCGATCCTACTTTGTTGAAGAAGA......................	25	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTGAAGAAGAAAAAGAA...............	21	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................GGTTCGATCCTACTTTGTTGAA...........................	22	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TCGATCCTACTTTGTTGAAGAAGAAAAA..................	28	1	1.00	1	1	0	0	0	0	0

droGri2

TCTTT----GTTCAGTTAA----------TAAAAAATAATCTATTATGGAAGGTGAAGACGTAAGTGTT--AATACAA--GTG-----TT-------------------------------------------------------------------------------GCAAT-G----CAAGTGTT-------AGTCACATTTGCGTCCAAATTAGAGTG--TACATT------GTGAATTCCAATGTGTGAGGTTATGTTGTCCAAATGAGGCTCCATTCACCAGGCATTTACCCACACACCCACCCAGTTGTATTTCATGTGCGAACCGTG-TTA-AACA--AT-TTGTGC-TT---TCAATATGTTTTTTTTAGGGTTTTGATCCCAGTTTATTGAAAAAGAAGAAGAAGAAGAAGACCACTTT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................CCAGTTTATTGAAAAAGAAGAAGAAGAA............	28	1	1.00	1	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAGAAGAAGACCACT..	22	1	1.00	1	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGAAGAAGAAGAAGACC.....	21	2	0.50	1	1	0

dp5

AAAGT----TTAAAGCTAAGTT-TAACCTACA-ACTATAAGAACAATGGATGCGGAAGACGTAAGTATT--GTTAATGCAGTAGAAAGATGCATTGTACT--AACGA---TTCTTGGGT--AAACGCAC-------A------GGCATATGTGTGATGTATACATGTGCACACCCG---------------ATGCACACATATTTATGTACATATTTGCGTGTGAATTCT------GCGAAC---AATGGTTGAGGTTATGTTAATA-------------------------------------------------------------------------AATAATTATTAATGG-AA---TTATTTCATTTTATTTAGGGTTTTGATCCCACTTTGTTGAAAAAGAAGAAGAAGAAGAAGACCACCTT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................TAAGAACAATGGATGCGGAAGACG................................................................................................................................................................................................................................................................................................................................................................................	24	1	51.00	51	0	1	0	0	0	0	0	12	37	1
.....................................TAAGAACAATGGATGCGGAAGACGG...............................................................................................................................................................................................................................................................................................................................................................................	25	1	50.00	50	0	0	0	0	0	0	0	25	25	0
...................................TATAAGAACAATGGATGCGGAAGAC.................................................................................................................................................................................................................................................................................................................................................................................	25	1	20.00	20	0	1	0	0	0	0	0	19	0	0
.....................................TAAGAACAATGGATGCGGAAGAC.................................................................................................................................................................................................................................................................................................................................................................................	23	1	19.00	19	0	0	0	0	0	0	0	5	14	0
.....................................TAAGAACAATGGATGCGGAAGACGGTT.............................................................................................................................................................................................................................................................................................................................................................................	27	1	11.00	11	0	1	0	0	0	0	0	3	7	0
.....................................TAAGAACAATGGATGCGGAAGACGGT..............................................................................................................................................................................................................................................................................................................................................................................	26	1	6.00	6	0	1	0	0	0	0	0	2	3	0
....................................ATAAGAACAATGGATGCGGAAGACG................................................................................................................................................................................................................................................................................................................................................................................	25	1	5.00	5	0	0	0	0	0	0	0	2	2	1
..................................CTATAAGAACAATGGATGCGGAAGACG................................................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	3
...................................TATAAGAACAATGGATGCGGAAGACG................................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	3	0	0
.....................................TAAGAACAATGGATGCGGAAGACGGG..............................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	0	2	1	0
......................................AAGAACAATGGATGCGGAAGACGGTT.............................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	1	1	0
....................................ATAAGAACAATGGATGCGGAAGAC.................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	2
............................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAAAGAAGAAGAAGA.............	20	1	2.00	2	0	0	0	0	2	0	0	0	0	0
.AAGT----TTAAAGCTAAGTT-TAA...................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........................................ACAATGGATGCGGAAGAC.................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................TTTGCGTGTGAATTCT------GC...............................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................GAACAATGGATGCGGAAGACG................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTGAAAAAGAAGAAGAAGA.............	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................ATAAGAACAATGGATGCGG......................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................................ATAAGAACAATGGATGCGGAAGACGG...............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................AAGAACAATGGATGCGGAAGAC.................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1
....................................ATAAGAACAATGGATGCGGA.....................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................TAAGAACAATGGATGCGGAAGACC................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.....................................TAAGAACAATGGATGCGGAAGA..................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TGAAAAAGAAGAAGAAGAAGAAGAC......	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.....................................TAAGAACAATGGATGCGGAAG...................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0
......................................AAGAACAATGGATGCGGAA....................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........TAAAGCTAAGTT-TAACCTACA-............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................AACAATGGATGCGGAAGAC.................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.......................................AGAACAATGGATGCGGAAGACG................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.......................TAACCTACA-ACTATAAGAACAATGGA...........................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................CTACA-ACTATAAGAACAATGGATGC........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGAAGAAGAAGAAGAAGAC......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................A-ACTATAAGAACAATGGA...........................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAAGAAGACCACCTT	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAGAAGAAGACC.....	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGAAGAAGAAGAAGAA.........	20	6	0.17	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAGAAGAAGAC......	18	8	0.13	1	0	1	0	0	0	0	0	0	0	0

droPer2

T----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATTTAGGGTTTTGATCCCACTTTGTTGAAAAAGAAGAAGAAGAAGAAGACAACCTT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAAAGAAGAAGAAGAAGA..........	23	1	2.00	2	2	0	0	0	0	0

droAna3

AAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATA---AT----TGAGGTTATGTTGGCCTGGCC------------------------------------------------------C-----AAATGCC-TAAT--TTCTAAATA-TT---TC--GCT-TTTTTAACAGGGTTTTGATCCCACTCTGCTGAAAAAGAAGAAGAAGAAGAAGACTACCTT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................................................................................................................................................................................................................................................................................................................................................................................TGAAAAAGAAGAAGAAGAAGA..........	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................GGTTTTGATCCCACTCTGCT..............................	20	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAAAAGAAGAAGAAGAAGAAGACT.....	28	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TGAAAAAGAAGAAGAAGAA............	19	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................GCTGAAAAAGAAGAAGAAGAAG...........	22	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGAAGAAGAAGAAGAA.........	21	2	0.50	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAGAAGAAGAC......	18	3	0.33	1	0	1	0	0	0	0

droBip1

ATTT---A-----------------------------------CAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT-GGCTAAGAAGA---GT----TGAGGTTATGTTGGCCCGTCC------------------------------------------------------C-----AAATGCT-GAAT--TTAAAAATA-TT---C---TGCTTTTTCAACAGGGTTTCGATCCCACTTTGCTGAAAAAGAAGAAGAAGAAGAAGACCACCTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCCG-----------------AGTATTTATAA-AGCGAAATCACAATGGACGCGGAAGACGTAAGTTATTTACCAACG--CAG---ACAAACACTTTCCC--CGCGAGAAATCCTGGCCTAGAATGCGA-------G------TACATACGTATGTCTTCTACATGTGCGCACT-----------------GTATGTGTATGTGTATTTACATATTTTTGTATGAAAACT------GCGAAA---AA----TGAGGTTATGTTGGCCTAATC------------------------------------------------------C-----GGATTTT-AAC-----ACCGATT-TT---TT--ATTTAATTTTGCAGGGTTTTGATCCCACTTTGCTGAAAAAGAAGAAGAAGAAGAAGACCACCTT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCGCAGGGTTTCGATCCCACTTTGTTAAAAAAGAAGAAGAAGAAGAAGACCACCTT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACAG-----------------AGTATTAAAAA-AGCATAAACACAATGGACGCAGAAGACGTAAGTTGG--AAAAACA--CCG---GGGCATAAGTTTAAAATGCTTGAAAAC----------------AT-CCTGGAAAGCGCACATATGTGCG-----TACATGTGCGCTCTTGTGTG----------TGTGTGTGTATGTGTATTTACCTGTTTGTGTATGAGCACTTGG---GCGAAC---AA----TGAGGTTATGTTTTACCTATC------------------------------------------------------C-----GGATTTCTAACC--ATTCCGAATCTT---GC--AATGAATTCTACAGGGTTTCGATCCCACTTTGTTGAAAAAGAAGAAGAAGAAGAAGACCACCTT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAA----------------------------G-AGCCCTAACACAATGGACGCAGAAGACGTAAGTTCG--AAAAACA--CTG---GGGTGAACGTTG-AAATGGGTAAAAAC----------------TC-CTTGAAAAGCACACATATGCGCG-----TGCATGTGCGCCCTTC----------------TGTGTGTATGTGTATTTACCTGTTTGGATACGAGCTCT-GG---GCGAAC---AA----TGAGGTTATGTTGTCTCTATC------------------------------------------------------C-----GGATTTCTGACC--GTTCCGAATTTT---CC--AATGGATTCCACAGGGTTTCGATCCCACTTTGATGAAAAAGAAGAAGAAGAAGAAGACCACCTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC---AA----TGAGGTTATGTTTTTGCGATC------------------------------------------------------C-----GGATTTA--ACC--ATACCGACT-TT---CT--CATGAATTCCGCAGGGTTTCGATCCCACTTTGTTGAAAAAGAAGAAGAAGAAGAAGACCACCTT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AACT-----------------AGTATTTAAAA-GGCATAAACACAATGGACGCGGAAGACGTAAGTTCG--AAAAACA--ACA---GGAAGCACTTTTAGAAGGG-GGAAAAC----------------TCCGCAAGAAAATTCGCATATGTCCG-----TACATGTGCGCCCCTG----------------TGTGTGTATGTGTATTTACCTGTTTGTGTATGAGCACT-AG---GCGGAC---AA----TGAGGTTATGTTTTCCTGATC------------------------------------------------------C-----GGATTTT-AG-C--TTACCGACT-TT---CC--CATGAATTCCACAGGGTTTCGATCCCACTTTGTTGAAAAAGAAGAAGAAGAAGAAGACCACCTT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AA-------------------------------GGCCTAAACACAATGGACGCGGAAGACGTAAGTT----AAAAACA-ATCA---GGATGCACTTTTAAAATGTTCAAAAAC----------------TTGGCTGGAAAACTCGCATATGTCCG-----TACATGTGCGCCGTTGGG------------TGTGTGTGTATGTGTATTTACATATTTGTGTATGAGAACT-GG---GCGAAT---AA----TGAGGTTATGTTTTTCTTACC------------------------------------------------------C-----GGATTTT-A-CC--TTACTATTT-TTTGTTT--GTTAATTTTTACAGGGTTTTGATCCCACTTTGCTGAAAAAGAAGAAGAAGAAGAAGACCACCTT	Size	Hit Count	Total Norm	Total
No Reads

dm3

A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC---AT----TGAGGTTATGTTTGCTTGATC------------------------------------------------------C-----GGATTTA-AACC--ATATTGAAA-TT---CC--AATGATTTTCGCAGGGTTTTGATCCCACTTTGCTGAAAAAGAAGAAGAAGAAGAAGACCACGTT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................GTTTTGATCCCACTTTGCTGA............................	21	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................GTTTTGATCCCACTTTGCTGAA...........................	22	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGAAAAAGAAGAAGAAGAAGAA.........	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0
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................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGAAGAAGAAGAAGAT.........	20	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................AAAGAAGAAGAAGAAGAAG........	19	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGAAGAAGAAGAAG........	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGAAGAAGAAGAAGAAGAA......	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATTA---ATTTCCAGTCAACTAGTATTCAAAC-AGCCCAGACACAATGGACGCGGAAGACGTAAGTTCC--CGGAACA--CCG---GCTAGTGCGCTGCAAATGC-GGAAAAC----------------TTGCGTGGAAAATTCGCATATTATCG-----TACATGTGCGCCCTTGTCTGCA--------TGTGTGTGTGTGTGTATTTACACATTTGTGTATGAGAACT-GG---GCGAAC---AT----TGAGGTTATGTTTGCTTGATC------------------------------------------------------C-----GGATTTA-AACC--ATATTGAAA-TT---CC--AATGATTTTCGCAGGGTTTTGATCCCACTTTGCTGAAAAAGAAGAAGAAGAAGAAGACCACGTT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................................................CGCATATTATCG-----TACATG.......................................................................................................................................................................................................................................................................	18	1	17.00	17	16	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTA---ATTTCCAGTCAACTAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ATTA---ATTTCCAGTCAACTAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................GACACAATGGACGCGGAAGACGGT..............................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0
...A---ATTTCCAGTCAACTAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ATTA---ATTTCCAGTCAACTAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AGTCAACTAGTATTCAAAC-AG..........................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...........CCAGTCAACTAGTATTCAAAC-AGCCCA......................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................T-GG---GCGAAC---AT----TGAGGTTATGTTTG....................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................GACACAATGGACGCGGAAGACG................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TTA---ATTTCCAGTCAACTA.......................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......ATTTCCAGTCAACTAGTATTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGAAAAAGAAGAAGAAG..............	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........TTTCCAGTCAACTAGTATTCAAAC-AG..........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................CGCATATTATCG-----TACATGTG.....................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TTTGATCCCACTTTGCTGAA...........................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CCAGTCAACTAGTATTCAAAC-AGCCC.......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TT---CC--AATGATTTTCGCAG..................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TTTCCAGTCAACTAGTATTCAAAC-AGCC........................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TA---ATTTCCAGTCAACTAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................GGTTTTGATCCCACTTTGCT..............................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TTTGCTTGATC------------------------------------------------------C-----GGATTTA-AACC--...................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TTTCCAGTCAACTAGTATTCAAAC-AGC.........................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................CTTGATC------------------------------------------------------C-----GGATTTA-AAC......................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
ATTA---ATTTCCAGTCAACTA.......................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................AAATGC-GGAAAAC----------------TTGCG.......................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................ACAATGGACGCGGAAGAC.................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.......................................GACACAATGGACGCGGA.....................................................................................................................................................................................................................................................................................................................................................................................	17	2	1.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TTTGATCCCACTTTGCTGAAAAAGAAGA...................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................................CACAATGGACGCGGA.....................................................................................................................................................................................................................................................................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................GAAAAAGAAGAAGAAGAA............	18	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

droSec2

ATTA---ATTTCCAGTCAACTAGTATTCAAAC-AGCCCAGACACAATGGACGCGGAAGACGTAAGTTCC--CGGAACA--CCG---GCTAGTGCGTTTCAAATGC-GGAAAAC----------------TTGCGTGGAAAATTCGCATATTAACG-----TACATGTGCGCCCTTGTCTGCA----------TGTGTGTGTGTGTATTTACACATTTGTGTATGAGAACT-GG---GCGAAC---AT----TGAGGTTATGTTTGCTTGATT----------------------------------------------------TGC-----GGATTTA-AACC--ATATTGAAA-TT---CC--AATGATTTTCGCAGGGTTTTGATCCCACTTTGCTGAAAAAGAAGAAGAAGAAGAAGACCACGTT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAGAAGAAGACC.....	19	2	1.50	3	0	0	3	0
.................AACTAGTATTCAAAC-AGCCCA......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
..TA---ATTTCCAGTCAACTAGTATTCA................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGAAAAAGAAGAAGAAGAAGAA.........	26	1	1.00	1	0	0	1	0
.................................AGCCCAGACACAATGGACGCGGA.....................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TTTTGATCCCACTTTGCTGA............................	20	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................ATCCCACTTTGCTGAAAA.........................	18	1	1.00	1	0	0	1	0
.....................................................................................................................................................................................................................ATTTGTGTATGAGAACT-GG---G................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1
...............................................................................................................................................................................GTCTGCA----------TGTGTGTGTGTGTATT.............................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1
........................ATTCAAAC-AGCCCAGACACA................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
..........................................ACAATGGACGCGGAAGAC.................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
...........................................................................................................................................................................CCTTGTCTGCA----------TGTGTGTGT....................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGAAAAAGAAGAAGAAGAAGA..........	25	1	1.00	1	0	1	0	0
.TTA---ATTTCCAGTCAACTAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................TGATCCCACTTTGCTGAAAAAGAAG....................	25	1	1.00	1	1	0	0	0
..........................................................................AACA--CCG---GCTAGTGCGTTTC..........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGAAGAAGAAGAAGA..........	19	7	0.14	1	0	0	1	0

droYak3

GA----------------------ATTCTAAA-AGCCCAAACACAATGGACGCGGAAGACGTAAGTTCC--AAAAACA--CCG---GGTTGTGCGTTTCAAATGC-GGAAAAC----------------TTGGCAAGAAAATTCGCATATGTCCG-----TACATGTGCGCCCTTGTTTGTG----TGTGCGTGTGTGTATGCGTATTTAAATGTTTGTGTATGAGAACT-GG---GCGAAC---AA----TGAGGTTATGTTTGCTTGATC------------------------------------------------------C-----GGATTTA-AACC--ATACCGAAA-TT---CC--AATGTTTTCCCCAGGGTTTTGATCCGACTTTGTTGAAAAAGAAGAAGAAGAAGAAGACCACCTT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................TTGTGCGTTTCAAATGC-GGAAAAC----------------TTGGCAA.....................................................................................................................................................................................................................................................................................................	31	1	6.00	6	0	0	0	0	0	0	0	0	0	0	6
............................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAAAGAAGAAGAAGAAGAA.........	24	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAGAAGAAGACC.....	19	3	1.67	5	0	0	4	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGAAAAAGAAGAAGAAGAAGAA.........	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAAAGAAGAAGAAGAAGA..........	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................TTAAATGTTTGTGTATGAGAACT-GG---GC...............................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGAAAAAGAAGAAGA................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................ATTTAAATGTTTGTGTATGAGAACT-GG---GC...............................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................GAAC---AA----TGAGGTTATGTTTGCTTGATC------------------------------------------------------.......................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................ACACAATGGACGCGGAAGAC.................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
.......................................AACACAATGGACGCGGAAGACG................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................TGAAAAAGAAGAAGAAGAAGAA.........	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................CTAAA-AGCCCAAACACAATG.............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................AAACACAATGGACGCGGA.....................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................CCAAACACAATGGACGCGGAAGAC.................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGAAGAAGACC.....	15	9	0.56	5	0	0	0	0	0	0	0	0	0	0	5

droEre2

AACT-----------------AGTATTCTAAA-AGCCCAAACACAATGGACGCGGAAGACGTAAGTTCC--AGGAACA--CCG---GATTGTGTGCTTAAAATTA-TGAAAAC----------------TTGCCTGGAAAATTCGCATATGTGCG-----TACATGTGCGCCCTTGT--GTATGTGTGTGTGCGTGTGCATGTGTATTTACATGTTTGTGTATGAGAACT-GG---GCGAAC---AA----TGAGGTTATGTTTGCTTGATC------------------------------------------------------C-----GGATTTA-AACC--ATACCGAAA-TT---TC--AATGATTTTCACAGGGTTTTGATCCCACTTTGTTGAAAAAGAAGAAGAAGAAGAAGACCACCTT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTGAAAAAGAAGAAGAAGAAGA..........	26	1	2.00	2	0	1	0	0	1	0	0
.................................AGCCCAAACACAATGGACGCGGAAGAC.................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAAAGAAGAAGAAGAAGAAG........	25	1	1.00	1	1	0	0	0	0	0	0
.......................................AACACAATGGACGCGGAAGACGGTT.............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAAGAAGAAGAAGACCACCTC	25	1	1.00	1	0	1	0	0	0	0	0
...........................CTAAA-AGCCCAAACACAATGGACGC........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
.................................AGCCCAAACACAATGGACGCGGA.....................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
............................TAAA-AGCCCAAACACAATGGACGC........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TTGATCCCACTTTGTTGAAA..........................	20	1	1.00	1	0	0	0	1	0	0	0
..................................GCCCAAACACAATGGACGCGGAA....................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
AACT-----------------AGTATTCTAAA-AGCC........................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
........................................ACACAATGGACGCGGAAGACGGT..............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAAAGAAGAAGAAGAAGA..........	23	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................GTGCGCCCTTGT--GTATGTGT..................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................TTATGTTTGCTTGATC------------------------------------------------------C-----GGATTTA-AAC......................................................................................	27	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAAGAAGAAGAAGACC.....	20	2	0.50	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGAAGAAGAAGACC.....	19	2	0.50	1	0	1	0	0	0	0	0

dwi_1921

scf2_1100000004729:1582180-1582314 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-21.0	-20.9	-20.9