dwi_1907

exon [dwil_GLEANR_12879:2]; exon [dwil_GLEANR_12879:3]; CDS [Dwil\GK12579-cds]; CDS [Dwil\GK12579-cds]; intron [Dwil\GK12579-in]

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------################################################## CAAACAGACCAAACAAAGTGTCCTGGAGGAGGCACGCAACAAGGCAAATGGTAAGCATCGCTAAAAAATATGTTCAAGATGGGAAAAGCTAGAGTTTGCCTTCCTTTTTAGTTTGTTTAGTTAAAATTTTGATTTTTTTAACCCTTTTGTTTTTGTTGTTATTGTTTTTTCCCCCTCCCTTTCCGCGGAAACTATAGATGCTTCCCTTGAGGAATGCATTCTACAGGCCAAGGGCGAGCACGTTCCC ************************************************.((((((..(((((((..............(((((..((........)).)))))))))))).))))))(((((((.........))))))).((...((((((((............................))))))))...))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V119 head	V118 embryo	M045 female body	V117 male body
.........................................................................................................................................................................................................................ATTCTACAGGCCAAGGGCGA..........	20	0	1	2.00	2	1	0	1	0
............................................................................................................................................................................................................................CTACAGGCCAAGGGCGAGCAC......	21	0	1	1.00	1	1	0	0	0
..................................................................................................................................................................................................CAGATGCTTCCCTTCAGGAAGG...............................	22	3	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................................ATTCTACAGGCCAAGGGCGAGCAC......	24	0	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................TCTACAGGCCAAGGGCGAGCAC......	22	0	1	1.00	1	1	0	0	0
............................................................................................................................................................................................................................CTACAGGCCAAGGGCGAGCA.......	20	0	1	1.00	1	1	0	0	0
..............................................................................ATGGGAAAAGCTTGAGCGTG.....................................................................................................................................................	20	3	7	0.14	1	0	0	0	1
.....................................................................................................................................................TATTTGTTGTTATTGATTTTTC............................................................................	22	2	14	0.07	1	1	0	0	0
.............................................................................................ATTTGCCTTCCTTGTTAG........................................................................................................................................	18	2	20	0.05	1	0	1	0	0

GTTTGTCTGGTTTGTTTCACAGGACCTCCTCCGTGCGTTGTTCCGTTTACCATTCGTAGCGATTTTTTATACAAGTTCTACCCTTTTCGATCTCAAACGGAAGGAAAAATCAAACAAATCAATTTTAAAACTAAAAAAATTGGGAAAACAAAAACAACAATAACAAAAAAGGGGGAGGGAAAGGCGCCTTTGATATCTACGAAGGGAACTCCTTACGTAAGATGTCCGGTTCCCGCTCGTGCAAGGG ************************************************.((((((..(((((((..............(((((..((........)).)))))))))))).))))))(((((((.........))))))).((...((((((((............................))))))))...))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V117 male body
...........................................................................................................................................................................GGGAAGGGAAAGGCGTCTTTC.......................................................	21	3	6	0.17	1	1
...........................................................................................CGTAAACGGAAGGAACAATC........................................................................................................................................	20	3	20	0.05	1	1

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004729:488589-488835 +	dwi_1907	CAAACAGACCAAACAAAGTGTCCTGGAGGAGGCACGCAACAAGGCAAATGGTAAGC-ATCGCTA----------------AA----------AA---------------------------------------ATATGT-------------------TCAAGATGGG------------------------------------------------------------------------------------------------------------------AAAAGCTAGAGTTTGCCTTCCTTT-----------------------------------------------------------------------------------------TTAGTTTG----------TTTAGTTA------------------------------------------------------------------------------AAATTT-TGATTTTTT-T---------AACCCTTTTGTTTTTG---TTGTTATTGTTTTTTCCCCCTCCCTT---T------CCGCG-GAAACTATAGATGCTTCCCTTGAGGAATGCATTCTACAGGCCAAGGGCGAGCACGTTCCC
droVir3	scaffold_13049:1045414-1045516 -		AATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------GCCTCATTT--TA------ATTTA--------TTTTTGTTGCAATTTCT------TTTA--TGTTTTAAAGACGCCTCGCTTGAGGAGTGCATTCAGCAGGCAAAGGGCGAGCATGTGCCC
droMoj3	scaffold_6680:235969-236119 +		AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCCTC----------------------------AC-----AACTTCTTA----G---------------------------------------TTCAGTTTATT------------------------------------------------------------------------------------------------T--AATTAT-TTATTTATT-TGCTTATTTTG-ATTTATTTTGTATT---ATTTT--------CTA---------T---T-TTTGTTT----TGTTCAATAGATGCCTCGCTTGAGGAGTGCATTCAGCAGGCAAAGGGCGAGCATGTGCCC
droGri2	scaffold_15110:2201648-2201894 -		CAAGCAGAACAAACAAACGGTCCTCGAGGAGGCACGCAGCAAGGCAAATGGTAAGT-T--------------------------------------------CAAC-------TCACT------------AATATA--CTGATTTAAGTAAGAGCTAGCCAAAGA---------------------------------------------------------------------------------------TTTTATTTT-----------------------------------------------------------------------------------GAA---A------------------------------------------------TCAC----------TTTGAGTTG-----------TTTGCTTATTTTTGAGTTTTA------------------------------------TT-TTGATTTCC----TTAA------------------------CATTT--C---CTGTT--------TTTTATT--------------TCTTAATTTTATTTAAAGACGCCTCGCTTGAGGAGTGCATTCAGCAGGCAAAGGGCGACCATGTGCCC
dp5	XR_group8:5220700-5220976 +		CAAGCAGACCAAACAGACCGTCCTGGAGGAAGCGCGCAACAAGGCAAATGGTAAGCACTC--------------------GA----------GAATCGTTGGCAACAAGTGCGGGGA---AAG---------------------------------------------------------------CACTCAA------CAAGTGCGGGG-T-------------ATCACACT-CTTAAAGTGGCCTAA-ATTTTGAGTTT-----------------------------------------------------------------------------------AAA---T------------------------------------------------TCAC----------TTTTCCTTGAGTTT--------------------------------------------------------------GTTTTTGT--AGTTCT-TTATTTTAT-T---------CCCCCA--TATTT--T---ATTTT-A------T-TTTAT-----T---T------TTTATTATTTTTAAAGACGCTTCTCTGGAGGAATGCATTCAGCAGGCCCAGG---AGCACAT-CCC
droPer2	scaffold_38:471451-471737 -		CAAGCAGACCAAACAGACCGTCCTGGAGGAAGCGCGCAACAAGGCAAATGGTAAGCACTC--------------------GA----------GAATCGTTGGCAACAAGTGCGGGGA---AAG---------------------------------------------------------------CACTCAA------CAAGTGCGGGG-T-------------ATCACACT-CTTAAAGTGGCCTAC-ATTTTGAGTTT-----------------------------------------------------------------------------------AAA---T------------------------------------------------TCAC----------TTTTCCTTGAGTTT--------------------------------------------------------------GTTTTTGT--AGTTCT-TTATTTTAT-T---------TCCCCA--TATTTAATTTTATTTT--------ATTTTATTTTATT---T------TTTATTATTTTTAAAGACGCTTCTCTGGAGGAATGCATTCAGCAGGCCCAGG---AGCACAT-CCC
droAna3	scaffold_13337:20203027-20203277 +		CAAGCAGACCAAACAAAGTGTCCTCGAGGAGGCCCGCAACAAGGCAAATGGTAAGT-TTTTCAAATTATGTCTATTAGGACTGAGAGCTTATGAAT-------------------------------------TTGGCT-------------------TCAAGTGGGGTTGAAAA----------------------------------------------------------------------------------------------------------------------------------T-T-GAGTCCT--------------------------------------------------------------------------------T--TCAC----------T-----GTGGGTTT-------------------------------------------------------------C-CTT-T-T--AGTTT----ATTTTTT------------CCCTCCTTATTTATT---GGTTT-T------T-ATTATT--------TT--ATTTT----AATTTTAAAGACGCTTCTCTGGAGGAATGCGTTCTGCAGGCTCAGG---AGCACATTCCG
droBip1	scf7180000396529:210308-210538 -		CAAGCAGACCAAACAAAGTGTCCTCGAGGAGGCCCGCAACAAGGCAAATGGTAAGT-TTTTT------------------AA----------AAATC-------------------------------------TGCCT-------------------TCAAATGGGGTGTAAAA----------------------------------------------------------------------------------------------------------------------------------T-C-GAGTCCT---------------------ACTTCATT----G------------------------------------GGGTTC------------------------TAT-----TTT-----------------------------------------------------------------G-T-T--AGTTTTTCCATTTTTC-T---------TTCCTAT---TTTATT---TATTT-A------T-TTTTT-T-------TT--ATTTTA---ATTTTTAAAGACGCTTCTCTGGAGGAATGCGTTCTTCAGGCTCAGG---AGCATATTCCG
droKik1	scf7180000302510:429669-429783 -		T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT-TTGTTTACC----TTATTTT---T---------TCCTCATTTTTAAATT---ATTAT--------T-TTTAT---------TTACTATTT----AATTTTATAGACGAGTCTCTGGAGGAATGCATTCTGCAGGCTGAGG---AGCACATTCCC
droFic1	scf7180000453929:886739-887072 +		CAAGCAGACCAAACAAACCGTCCTCGAGGAGGCCCGCAGCAAGGCAAACGGTAAGT-GGC--------------------TA----------AAATC-----CAACAAGTGGGTGATAAAAAC----------GTGGCT-------------------TTAAAGGGGGTCTAAATT-GGCTAGGAACATTCAA------CAAGTTTGTGG-A-------------AAAACATATATTAAAGTAGCTTACAACTGGGTCAA-------------------------------AGTTTGCCTT----------------------------T-----TAAATT---AA---ATTCATATTTTGTATTCTGATTTATTTAA-----------------------------------------------------------------------------------TTTTTAT----------------------------A--AGTTT--------ATT---------TTT-ATTTTTTATTTATA---ATTTC--------CTTTCTTTAT------TT--ATTTT----AATTTTAAAGATGGTTCTCTGGAGGAGTGCATTCTGCAGGCTCAGG---AGCACATTCCT
droEle1	scf7180000491193:1559538-1559681 -		T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------TAAT-----------------------------TTGTT----------TTTTAAAT----------TTTGTTT------------------------------------------------------------------TAG-TTT-T-A--AGTTTA-TTATTTTTT---------CTT-GCCTTTTATTTATG---ATTTC--------CTTTTGTTTTAAT---------TTT----AATTTTAAAGACGATTCCCTGGAGGAGTGCATTCTGCAGGCTCAGG---AGCACATTCCT
droRho1	scf7180000779207:34653-35017 -		CAAGCAGACCAAACAAACCGTCCTCGAGGAGGCGCGCAACAAGGCAAATGGTAAGT-CTC--------------------AA----------AAATT-----CAACAAGTGGGTGGAACAAATATCCAGTAAAGTAGCT-------------------TAAA------------TCTGTCTTTGGAAATTCAA------CAAGTGGTAGTCTAAAAAA--------------A-CTTAAAGTAACTTAA-ATTGGGGCCTTAAA-----------------------------------------TTCGGCTTGTTTATCCTTATTCTTT----------------------CATATTTTAAATGCTGTTTAATTTAAATTTGATC---------TTTCATGG----------TTT--CT------------------------------------------------------------------TAG-CTT-T-T--AGTTTA-TTATTTATC---------CCT-TCATTTTATTTATT---ATTTC--------CTTTTATTTTTAT---------TTG----AATTACAAAGATGATTCTCTGGAGGAGTGCATTCTGCAAGCTCAGG---AGCACATTCCT
droBia1	scf7180000302193:4268950-4269318 -		CAAGCAGACCAAACAAACCGTCCTCGAGGAGGCCCGCAGCAAGGCAAATGGTAGGT-GTC--------------------CC----------GGGTC-----CAACAAGTCGGTGCTAAAAAC-TCCAGCAAAGTATCT-------------------GTAGAGGGGGAATAAATTGGGCTTTGAAAACTCAA------CAAGTGGGTGC-TTAGAAATTGTAGAAA--AACC-TTTAAAGGGGGC-------------TTAAA-----------------------------------------T-C-GCGTACTTATGCTTGATCTTAT-----AACTT------TTG-----------------------------TTTGAT----------TTTTATATTTTTTTTGTATTTAACTTGTTTTT---------------------------------------------------------------ACC-T-T--AGTTTA-TTATTTATTCT---------T---CCCTTATTTATT---GTTAT-C------CCTTCTTT--TAT---T----TTTT----AATTTTAAAGACGATTCTCTGGAGGATTGCATTTTGCAGGCTCAGG---AGCACATTCCT
droTak1	scf7180000415809:658141-658505 -		CAAGCAGACCAAACAAACCGTCCTCGAGGAGGCCCGCAACAAGGCAAATGGTGAGT-CTC--------------------TA----------GAATC-----CAACAAGTGG----------------------TAGCT-------------------TTAAAGAGGGTTTAAATTTGGCTTTGAAAATCCAA------CAAGTGGGTGC-TAGAAAATCG-----------T-ATTAAATTGGGC------------T-----------------------------------------------------TATTTATCCTGAATATTTTAAAGTAAATT------AAA-----------------------------TTTGAT----------TTTTACAT----------TTTGA-----AATTGCGATTTA---------------TTTATTCTGAATAGTTAAAAGTA-------AATTATTA--TTT-T-T--AGTTTA-TCATTTATTTT---------TCCCCATTTATTTATT---ATTTT--------CCTCTCTTTTT-----TTATATCTT----AATTTTAAAGACGATTCTCTGGAGGATTGCATTCTGCAGGCTCAGG---AGCACATTCCT
droEug1	scf7180000409711:4274946-4275261 -		CAAGCAGACCAAACAAACCGTCCTCGAGGAGGCCCGCAACAAGGCAAATGGTGAGT-CTC--------------------AA----------AAGTC-----CAACAAGTGGGTGTTAGAAAA-CATTTTAAAGTAGCT-------------------TGAAATTGGGTTTAAATTTTGC---------TCAA------CAAGTGGGTGC-TTGAAAA--------------T-CTTTAAG-----------------------------------AAAT-------------------------------------------------------TAAGTT---AA---ATT---------------------TTTGG-----------------------------------------------------------------------------------TTTTTGTAAATTTAATTTT--GTTTTAG-TTT-T-T--AGTTTT-TT--TGATTTT---------TCCCCATTTATTTATG---ATTTA--------TTTTCTTTATTAT---T----TCTT----AATTTTAAAGACGATTCTCTGGAGGATTGCATTCTGCAGGCCCAGG---AGCACATTCCT
dm3	chr3L:6710726-6711053 -		CAAGCAGACCAAACAAACCGTCCTCGAGGAGGCCCGCAGCAAGGCAAATGGTAAGT-GGA--------------------TA----------GGGTC-----CAACAAGTGGGTCACT------------AAAATAGCT-------------------CCAAAGAGGGTTTCTATTTGGGAT-CAAAAGGGAAATTTTGC-------AG------------------------------------------CTAGGGCTTT-ACTTGTTGATTAAAAACTTAAAAAGTTGCAATTTTTATTTCATT-----------------------------------------------------------------------------------------TTATTCGT----------TTTGACATAGATTTGCGTTTTT-------------------------------------------------------------------TTC-TTATTCATT---------TTA-ACCCTTTATTTATT---ATTTG--------CCTTCGTTTTTAT---T------TTTAT-GATTTTAAAGACGATTCCCTGGAAGATTGCATTGTGCAGGCTCAGG---AGCACATTCCC
droSim2	3l:6585473-6585788 -		CAAGCAGACCAAACAAACCGTCCTCGAGGAGGCCCGCAGCAAGGCAAATGGTAAGT-GGA--------------------TA----------GAGTC-----CAACAAGTGGGTCACT------------AAAATAGCT-------------------CCAAAGGGGGTTTCAATTTGGGAT-GAAAACGGAA------G---------------------------------------------------ATAGGTCTTT-ACCTGTTGATTAAAAACTTAAAAAGTTGCAATTTTTATTTCATT-----------------------------------------------------------------------------------------TTATTCGC----------TTTAACTTAGATTT---------------------------------------------------------------------G--CGTTTA-TTATTTATT---------TCC-ACCCTTTATTTATT---ATTTG--------CCTTCGTTCTTAT---T------TTTAT-GATTTTAAAGACGATTCTCTGGAGGATTGCATTGTGCAGGCTCAGG---AGCACATTCCC
droSec2	scaffold_2:6647090-6647405 -		CAAGCAGACCAAACAAACCGTCCTCGAGGAGGCCCGCAGCAAGGCAAATGGTAAGT-GGA--------------------TA----------GAGTC-----CAATAAGTGGGTCACT------------AAAATAGCT-------------------CCAAAGAGGGTTTTAATTTGGGAT-CAAAACGGAA------T---------------------------------------------------ATAGGGCTTT-ACCTGTTGATTAAAATCTTAAAAAGTTGCAATTTTTATTTCATT-----------------------------------------------------------------------------------------TTATTCGC----------TTTAACTTGGATTT---------------------------------------------------------------------G--CGTTTA-TTACTTATT---------TCC-ACCCTTTATTTATT---ATTTG--------CCTTCGTTCTTAT---T------TTTAT-GATTTTAAAGACGATTCTGTGGAGGATTGCATTGTGCAGGCTCAGG---AGCACATTCCC
droYak3	3L:7295038-7295362 -		CAAGCAGACCAAACAAACCGTCCTCGAGGAGGCCCGCAGCAAGGCAAATGGTAAGT-GAA--------------------CA----------TGGTG-----CAACAAGTGGGTCTCT------------CAATTAGCT-------------------TCAA------TTTCAATTTGGTAT-CGAAACAATA------------GTAGTTCAAAA---------------AT-GTTAAA-----------CTGGGGCAATAACATG-TGTTTAAAAACTTAAAAAGTTACAATTTGTATTTCTTT---------------------------------------------------------------------------------------------TCGG----------CTTGAC-----TTT--------------------------------------------------------------ATTATT-T--AGTTTC-TT--TTGTATT---------CACCCCTTTACTTATT---ATTTT--------CCTTCGTTCGTAT---T----T-TTTAT-AATTTTAAAGACGATTCCGTGGAGGATTGCATTGTGCAGGCTCAGG---AGCACATTCCC
droEre2	scaffold_4784:4653293-4653584 +		CAAGCAGACCAAACAAACCGTCCTGGAGGAGGCCCGCAGCAAGGCAAATGGTAAGT-GGA--------------------T-----------GGGTC-----CAACAAGTGGGTCACT------------AAA-TTGCG-------------------CCAAAGAGGGTTTCAATTTGGTGT-CGAAAGGGGA-----GC-------AG------------------------------------------TT----------------------AAAGTTAAAAAGTTCTTATATTCATTTGTTT----------------------------------------------------------------------------------------TTTA----T----------TTACAAA------------------------------------------------------------------TGC-ACT-T-A--AGTTTA-TTATTTATT-----------CGCCCCTTTATTTATT---GTTTC--------CCTTCGTTCCTAT---T------TTTAT-AATTTTAAAGACGATTCTCTGGAGGAGTGCATTGTGCAGGCTCAGG---AGCACATTCCC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

CAAACAGACCAAACAAAGTGTCCTGGAGGAGGCACGCAACAAGGCAAATGGTAAGC-ATCGCTA----------------AA----------AA---------------------------------------ATATGT-------------------TCAAGATGGG------------------------------------------------------------------------------------------------------------------AAAAGCTAGAGTTTGCCTTCCTTT-----------------------------------------------------------------------------------------TTAGTTTG----------TTTAGTTA------------------------------------------------------------------------------AAATTT-TGATTTTTT-T---------AACCCTTTTGTTTTTG---TTGTTATTGTTTTTTCCCCCTCCCTT---T------CCGCG-GAAACTATAGATGCTTCCCTTGAGGAATGCATTCTACAGGCCAAGGGCGAGCACGTTCCC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTACAGGCCAAGGGCGA..........	20	1	2.00	2	0	1	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGGCCAAGGGCGAGCAC......	21	1	1.00	1	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCTACAGGCCAAGGGCGAGCAC......	24	1	1.00	1	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTACAGGCCAAGGGCGAGCAC......	22	1	1.00	1	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGGCCAAGGGCGAGCA.......	20	1	1.00	1	0	0	0	0	1

droVir3

AATTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---------GCCTCATTT--TA------ATTTA--------TTTTTGTTGCAATTTCT------TTTA--TGTTTTAAAGACGCCTCGCTTGAGGAGTGCATTCAGCAGGCAAAGGGCGAGCATGTGCCC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCATTCAGCAGGCAAAGGGCGA..........	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGCATTCAGCAGGCAAAGGGCGAG.........	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCTCGCTTGAGGAGTGC..............................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCATTCAGCAGGCAAAGG..............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGGGCGAGCATGTGCC.	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCAGCAGGCAAAGG..............	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGTGCATTCAGCAGGCAAAGG..............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTTGAGGAGTGCATTCAGCAGGC...................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGTGCATTCAGCAGGCAAAGGGC............	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGAGTGCATTCAGCAGGC...................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

AA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGCCTC----------------------------AC-----AACTTCTTA----G---------------------------------------TTCAGTTTATT------------------------------------------------------------------------------------------------T--AATTAT-TTATTTATT-TGCTTATTTTG-ATTTATTTTGTATT---ATTTT--------CTA---------T---T-TTTGTTT----TGTTCAATAGATGCCTCGCTTGAGGAGTGCATTCAGCAGGCAAAGGGCGAGCATGTGCCC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

CAAGCAGAACAAACAAACGGTCCTCGAGGAGGCACGCAGCAAGGCAAATGGTAAGT-T--------------------------------------------CAAC-------TCACT------------AATATA--CTGATTTAAGTAAGAGCTAGCCAAAGA---------------------------------------------------------------------------------------TTTTATTTT-----------------------------------------------------------------------------------GAA---A------------------------------------------------TCAC----------TTTGAGTTG-----------TTTGCTTATTTTTGAGTTTTA------------------------------------TT-TTGATTTCC----TTAA------------------------CATTT--C---CTGTT--------TTTTATT--------------TCTTAATTTTATTTAAAGACGCCTCGCTTGAGGAGTGCATTCAGCAGGCAAAGGGCGACCATGTGCCC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...............AACGGTCCTCGAGGAGGCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	3	0
...............AACGGTCCTCGAGGAGGCACGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	3	0
..................GGTCCTCGAGGAGGCACGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0
..............AAACGGTCCTCGAGGAGGCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0
.................CGGTCCTCGAGGAGGCACGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0
................ACGGTCCTCGAGGAGGCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
...................GTCCTCGAGGAGGCACGCAGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0
...........AACAAACGGTCCTCGAGGAGGCACGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0
..................GGTCCTCGAGGAGGCACGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0
..........................AGGAGGCACGCAGCAAGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
.......................TCGAGGAGGCACGCAGCAAGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGCAGGCAAAGGGCG...........	18	1	1.00	1	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGCAAAGGGCGACCATGTG...	22	1	1.00	1	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGCAAAGGGCGACC........	18	1	1.00	1	1	0
......................CTCGAGGAGGCACGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
...........AACAAACGGTCCTCGAGGAGGCACGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGGCAAAGGGCGACCA.......	19	1	1.00	1	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCTTGAGGAGTGCATTCAGCAG.....................	25	1	1.00	1	1	0
...........AACAAACGGTCCTCGAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGGGCGACCATGTG...	18	1	1.00	1	1	0
.............CAAACGGTCCTCGAGGAGGCACGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0
.....................CCTCGAGGAGGCACGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCTCGCTTGAGGAGTGCATT...........................	22	1	1.00	1	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCAAAGGGCGACCATGTG...	21	1	1.00	1	1	0
..................GGTCCTCGAGGAGGCACGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
...........AACAAACGGTCCTCGAGGAGGCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0
...........................GGAGGCACGCAGCAAGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
CAAGCAGAACAAACAAACG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0
.................CGGTCCTCGAGGAGGCACGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCAGCAGGCAAAGGGCG...........	19	1	1.00	1	1	0
..........AAACAAACGGTCCTCGAGGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGAGTGCATTCAGCAG.....................	20	1	1.00	1	0	1

dp5

CAAGCAGACCAAACAGACCGTCCTGGAGGAAGCGCGCAACAAGGCAAATGGTAAGCACTC--------------------GA----------GAATCGTTGGCAACAAGTGCGGGGA---AAG---------------------------------------------------------------CACTCAA------CAAGTGCGGGG-T-------------ATCACACT-CTTAAAGTGGCCTAA-ATTTTGAGTTT-----------------------------------------------------------------------------------AAA---T------------------------------------------------TCAC----------TTTTCCTTGAGTTT--------------------------------------------------------------GTTTTTGT--AGTTCT-TTATTTTAT-T---------CCCCCA--TATTT--T---ATTTT-A------T-TTTAT-----T---T------TTTATTATTTTTAAAGACGCTTCTCTGGAGGAATGCATTCAGCAGGCCCAGG---AGCACAT-CCC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............GACCGTCCTGGAGGAAGCGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
CAAGCAGACCAAACAGACCGTCCTGGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...............GACCGTCCTGGAGGAAGCGCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGGCCCAGG---AGCAC......	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.............CAGACCGTCCTGGAGGAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..............AGACCGTCCTGGAGGAAGCGCGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..............AGACCGTCCTGGAGGAAGCGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................ACCGTCCTGGAGGAAGCGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CAAGCAGACCAAACAGACCGTCCTGGAGGAAGCGCGCAACAAGGCAAATGGTAAGCACTC--------------------GA----------GAATCGTTGGCAACAAGTGCGGGGA---AAG---------------------------------------------------------------CACTCAA------CAAGTGCGGGG-T-------------ATCACACT-CTTAAAGTGGCCTAC-ATTTTGAGTTT-----------------------------------------------------------------------------------AAA---T------------------------------------------------TCAC----------TTTTCCTTGAGTTT--------------------------------------------------------------GTTTTTGT--AGTTCT-TTATTTTAT-T---------TCCCCA--TATTTAATTTTATTTT--------ATTTTATTTTATT---T------TTTATTATTTTTAAAGACGCTTCTCTGGAGGAATGCATTCAGCAGGCCCAGG---AGCACAT-CCC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...GCAGACCAAACAGACCGTCCTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
CAAGCAGACCAAACAGACCGTCCTGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACGCTTCTCTGGAGGAATGC..............................	22	1	1.00	1	0	0	0	0	0	1
...GCAGACCAAACAGACCGTCCTGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCTTCTCTGGAGGAATGC..............................	20	1	1.00	1	0	1	0	0	0	0

droAna3

CAAGCAGACCAAACAAAGTGTCCTCGAGGAGGCCCGCAACAAGGCAAATGGTAAGT-TTTTCAAATTATGTCTATTAGGACTGAGAGCTTATGAAT-------------------------------------TTGGCT-------------------TCAAGTGGGGTTGAAAA----------------------------------------------------------------------------------------------------------------------------------T-T-GAGTCCT--------------------------------------------------------------------------------T--TCAC----------T-----GTGGGTTT-------------------------------------------------------------C-CTT-T-T--AGTTT----ATTTTTT------------CCCTCCTTATTTATT---GGTTT-T------T-ATTATT--------TT--ATTTT----AATTTTAAAGACGCTTCTCTGGAGGAATGCGTTCTGCAGGCTCAGG---AGCACATTCCG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGAGGAATGCGTTCTGCA......................	22	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTGGAGGAATGCGTTCTGCAGGCTC.................	28	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAATGCGTTCTGCAGGCTC.................	23	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCAGGCTCAGG---AGCACATTCC.	23	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGCAGGCTCAGG---AGCA.......	20	1	1.00	1	0	0	0	0	1	0
...........AACAAAGTGTCCTCGAGGAGGCCCGCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.....................CCTCGAGGAGGCCCGCAACAAGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0
...........AACAAAGTGTCCTCGAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1

droBip1

CAAGCAGACCAAACAAAGTGTCCTCGAGGAGGCCCGCAACAAGGCAAATGGTAAGT-TTTTT------------------AA----------AAATC-------------------------------------TGCCT-------------------TCAAATGGGGTGTAAAA----------------------------------------------------------------------------------------------------------------------------------T-C-GAGTCCT---------------------ACTTCATT----G------------------------------------GGGTTC------------------------TAT-----TTT-----------------------------------------------------------------G-T-T--AGTTTTTCCATTTTTC-T---------TTCCTAT---TTTATT---TATTT-A------T-TTTTT-T-------TT--ATTTTA---ATTTTTAAAGACGCTTCTCTGGAGGAATGCGTTCTTCAGGCTCAGG---AGCATATTCCG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT-TTGTTTACC----TTATTTT---T---------TCCTCATTTTTAAATT---ATTAT--------T-TTTAT---------TTACTATTT----AATTTTATAGACGAGTCTCTGGAGGAATGCATTCTGCAGGCTGAGG---AGCACATTCCC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAAGCAGACCAAACAAACCGTCCTCGAGGAGGCCCGCAGCAAGGCAAACGGTAAGT-GGC--------------------TA----------AAATC-----CAACAAGTGGGTGATAAAAAC----------GTGGCT-------------------TTAAAGGGGGTCTAAATT-GGCTAGGAACATTCAA------CAAGTTTGTGG-A-------------AAAACATATATTAAAGTAGCTTACAACTGGGTCAA-------------------------------AGTTTGCCTT----------------------------T-----TAAATT---AA---ATTCATATTTTGTATTCTGATTTATTTAA-----------------------------------------------------------------------------------TTTTTAT----------------------------A--AGTTT--------ATT---------TTT-ATTTTTTATTTATA---ATTTC--------CTTTCTTTAT------TT--ATTTT----AATTTTAAAGATGGTTCTCTGGAGGAGTGCATTCTGCAGGCTCAGG---AGCACATTCCT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------TAAT-----------------------------TTGTT----------TTTTAAAT----------TTTGTTT------------------------------------------------------------------TAG-TTT-T-A--AGTTTA-TTATTTTTT---------CTT-GCCTTTTATTTATG---ATTTC--------CTTTTGTTTTAAT---------TTT----AATTTTAAAGACGATTCCCTGGAGGAGTGCATTCTGCAGGCTCAGG---AGCACATTCCT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAAGCAGACCAAACAAACCGTCCTCGAGGAGGCGCGCAACAAGGCAAATGGTAAGT-CTC--------------------AA----------AAATT-----CAACAAGTGGGTGGAACAAATATCCAGTAAAGTAGCT-------------------TAAA------------TCTGTCTTTGGAAATTCAA------CAAGTGGTAGTCTAAAAAA--------------A-CTTAAAGTAACTTAA-ATTGGGGCCTTAAA-----------------------------------------TTCGGCTTGTTTATCCTTATTCTTT----------------------CATATTTTAAATGCTGTTTAATTTAAATTTGATC---------TTTCATGG----------TTT--CT------------------------------------------------------------------TAG-CTT-T-T--AGTTTA-TTATTTATC---------CCT-TCATTTTATTTATT---ATTTC--------CTTTTATTTTTAT---------TTG----AATTACAAAGATGATTCTCTGGAGGAGTGCATTCTGCAAGCTCAGG---AGCACATTCCT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAAGCAGACCAAACAAACCGTCCTCGAGGAGGCCCGCAGCAAGGCAAATGGTAGGT-GTC--------------------CC----------GGGTC-----CAACAAGTCGGTGCTAAAAAC-TCCAGCAAAGTATCT-------------------GTAGAGGGGGAATAAATTGGGCTTTGAAAACTCAA------CAAGTGGGTGC-TTAGAAATTGTAGAAA--AACC-TTTAAAGGGGGC-------------TTAAA-----------------------------------------T-C-GCGTACTTATGCTTGATCTTAT-----AACTT------TTG-----------------------------TTTGAT----------TTTTATATTTTTTTTGTATTTAACTTGTTTTT---------------------------------------------------------------ACC-T-T--AGTTTA-TTATTTATTCT---------T---CCCTTATTTATT---GTTAT-C------CCTTCTTT--TAT---T----TTTT----AATTTTAAAGACGATTCTCTGGAGGATTGCATTTTGCAGGCTCAGG---AGCACATTCCT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAAGCAGACCAAACAAACCGTCCTCGAGGAGGCCCGCAACAAGGCAAATGGTGAGT-CTC--------------------TA----------GAATC-----CAACAAGTGG----------------------TAGCT-------------------TTAAAGAGGGTTTAAATTTGGCTTTGAAAATCCAA------CAAGTGGGTGC-TAGAAAATCG-----------T-ATTAAATTGGGC------------T-----------------------------------------------------TATTTATCCTGAATATTTTAAAGTAAATT------AAA-----------------------------TTTGAT----------TTTTACAT----------TTTGA-----AATTGCGATTTA---------------TTTATTCTGAATAGTTAAAAGTA-------AATTATTA--TTT-T-T--AGTTTA-TCATTTATTTT---------TCCCCATTTATTTATT---ATTTT--------CCTCTCTTTTT-----TTATATCTT----AATTTTAAAGACGATTCTCTGGAGGATTGCATTCTGCAGGCTCAGG---AGCACATTCCT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CAAGCAGACCAAACAAACCGTCCTCGAGGAGGCCCGCAACAAGGCAAATGGTGAGT-CTC--------------------AA----------AAGTC-----CAACAAGTGGGTGTTAGAAAA-CATTTTAAAGTAGCT-------------------TGAAATTGGGTTTAAATTTTGC---------TCAA------CAAGTGGGTGC-TTGAAAA--------------T-CTTTAAG-----------------------------------AAAT-------------------------------------------------------TAAGTT---AA---ATT---------------------TTTGG-----------------------------------------------------------------------------------TTTTTGTAAATTTAATTTT--GTTTTAG-TTT-T-T--AGTTTT-TT--TGATTTT---------TCCCCATTTATTTATG---ATTTA--------TTTTCTTTATTAT---T----TCTT----AATTTTAAAGACGATTCTCTGGAGGATTGCATTCTGCAGGCCCAGG---AGCACATTCCT	Size	Hit Count	Total Norm	Total
No Reads

dm3

CAAGCAGACCAAACAAACCGTCCTCGAGGAGGCCCGCAGCAAGGCAAATGGTAAGT-GGA--------------------TA----------GGGTC-----CAACAAGTGGGTCACT------------AAAATAGCT-------------------CCAAAGAGGGTTTCTATTTGGGAT-CAAAAGGGAAATTTTGC-------AG------------------------------------------CTAGGGCTTT-ACTTGTTGATTAAAAACTTAAAAAGTTGCAATTTTTATTTCATT-----------------------------------------------------------------------------------------TTATTCGT----------TTTGACATAGATTTGCGTTTTT-------------------------------------------------------------------TTC-TTATTCATT---------TTA-ACCCTTTATTTATT---ATTTG--------CCTTCGTTTTTAT---T------TTTAT-GATTTTAAAGACGATTCCCTGGAAGATTGCATTGTGCAGGCTCAGG---AGCACATTCCC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCATTGTGCAGGCTCAGG---A..........	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTGCATTGTGCAGGCTCAG...............	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCCCTGGAAGATTGCA.............................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCCCTGGAAGATTGCATTGTGCA......................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.................................................................................................................TCACT------------AAAATAGCT-------------------CCAAAGAGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
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............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGGAAGATTGCATTGTGC.......................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGTGCAGGCTCAGG---...........	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTTGCGTTTTT-------------------------------------------------------------------TTC-TTATTC.......................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCATTGTGCAGGCTCAGG---A..........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCATTGTGCAGGCT..................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTAT---T------TTTAT-GATTTTAA....................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CAAGCAGACCAAACAAACCGTCCTCGAGGAGGCCCGCAGCAAGGCAAATGGTAAGT-GGA--------------------TA----------GAGTC-----CAACAAGTGGGTCACT------------AAAATAGCT-------------------CCAAAGGGGGTTTCAATTTGGGAT-GAAAACGGAA------G---------------------------------------------------ATAGGTCTTT-ACCTGTTGATTAAAAACTTAAAAAGTTGCAATTTTTATTTCATT-----------------------------------------------------------------------------------------TTATTCGC----------TTTAACTTAGATTT---------------------------------------------------------------------G--CGTTTA-TTATTTATT---------TCC-ACCCTTTATTTATT---ATTTG--------CCTTCGTTCTTAT---T------TTTAT-GATTTTAAAGACGATTCTCTGGAGGATTGCATTGTGCAGGCTCAGG---AGCACATTCCC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTCTCTGGAGGATTG...............................	18	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTGCAGGCTCAGG---AGCAC......	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTCTCTGGAGGATTGCATTGTGCA......................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1

droSec2

CAAGCAGACCAAACAAACCGTCCTCGAGGAGGCCCGCAGCAAGGCAAATGGTAAGT-GGA--------------------TA----------GAGTC-----CAATAAGTGGGTCACT------------AAAATAGCT-------------------CCAAAGAGGGTTTTAATTTGGGAT-CAAAACGGAA------T---------------------------------------------------ATAGGGCTTT-ACCTGTTGATTAAAATCTTAAAAAGTTGCAATTTTTATTTCATT-----------------------------------------------------------------------------------------TTATTCGC----------TTTAACTTGGATTT---------------------------------------------------------------------G--CGTTTA-TTACTTATT---------TCC-ACCCTTTATTTATT---ATTTG--------CCTTCGTTCTTAT---T------TTTAT-GATTTTAAAGACGATTCTGTGGAGGATTGCATTGTGCAGGCTCAGG---AGCACATTCCC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGCTCAGG---AGCACATTCC.	21	1	1.00	1	0	0	0	1
...........................................................A--------------------TA----------GAGTC-----CAATAAGTGGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1

droYak3

CAAGCAGACCAAACAAACCGTCCTCGAGGAGGCCCGCAGCAAGGCAAATGGTAAGT-GAA--------------------CA----------TGGTG-----CAACAAGTGGGTCTCT------------CAATTAGCT-------------------TCAA------TTTCAATTTGGTAT-CGAAACAATA------------GTAGTTCAAAA---------------AT-GTTAAA-----------CTGGGGCAATAACATG-TGTTTAAAAACTTAAAAAGTTACAATTTGTATTTCTTT---------------------------------------------------------------------------------------------TCGG----------CTTGAC-----TTT--------------------------------------------------------------ATTATT-T--AGTTTC-TT--TTGTATT---------CACCCCTTTACTTATT---ATTTT--------CCTTCGTTCGTAT---T----T-TTTAT-AATTTTAAAGACGATTCCGTGGAGGATTGCATTGTGCAGGCTCAGG---AGCACATTCCC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAGGATTGCATTGTGCAGGCTC.................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0

droEre2

CAAGCAGACCAAACAAACCGTCCTGGAGGAGGCCCGCAGCAAGGCAAATGGTAAGT-GGA--------------------T-----------GGGTC-----CAACAAGTGGGTCACT------------AAA-TTGCG-------------------CCAAAGAGGGTTTCAATTTGGTGT-CGAAAGGGGA-----GC-------AG------------------------------------------TT----------------------AAAGTTAAAAAGTTCTTATATTCATTTGTTT----------------------------------------------------------------------------------------TTTA----T----------TTACAAA------------------------------------------------------------------TGC-ACT-T-A--AGTTTA-TTATTTATT-----------CGCCCCTTTATTTATT---GTTTC--------CCTTCGTTCCTAT---T------TTTAT-AATTTTAAAGACGATTCTCTGGAGGAGTGCATTGTGCAGGCTCAGG---AGCACATTCCC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.AAGCAGACCAAACAAACCGTCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0

dwi_1907

scf2_1100000004729:488639-488785 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads