ID:

dwi_1895

 Coordinate:

scf2_1100000004711:5821-5971 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.6 -13.3 -13.3

Flybase annnotation

exon [dwil_GLEANR_4326:1]; CDS [Dwil\GK21281-cds]; intron [Dwil\GK21281-in]

Repeatable elements

NameClassFamilyStrand
Gypsy-13_DWil-I-intLTRGypsy+
mature
  1. scf2_1100000010605:1507-1530 -
  2. scf2_1100000001636:7592-7615 -
  3. scf2_1100000006927:1266-1289 -
  4. scf2_1100000004601:3778-3801 -
  5. dwi_1895  scf2_1100000004711:5872-5895 +
  6. scf2_1100000004721:357299-357322 -
  7. scf2_1100000004838:2428-2451 +
  8. scf2_1100000004838:6443-6466 +
  9. scf2_1100000004838:42608-42631 +
  10. scf2_1100000004873:22415-22438 -
  11. scf2_1100000004887:147531-147554 +
  12. scf2_1100000004887:447794-447817 -
  13. scf2_1100000004894:20330-20353 +
  14. scf2_1100000004936:155151-155174 +
  15. scf2_1100000004954:30857-30880 -
  16. scf2_1100000004958:287065-287088 -
  17. scf2_1100000007548:237-260 -
star
  1. scf2_1100000001636:7550-7570 -
  2. scf2_1100000006927:1224-1244 -
  3. dwi_1895  scf2_1100000004711:5917-5937 +
  4. scf2_1100000004838:6488-6508 +
  5. scf2_1100000004838:42653-42673 +
  6. scf2_1100000004873:22373-22393 -
  7. scf2_1100000004887:147576-147596 +
  8. scf2_1100000004887:447752-447772 -
  9. scf2_1100000004894:20375-20395 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCTGCAACAGTACGACGTGCAGATTCAGCACCGAAGTGGTACACAACATGGTAACGCTGACAGCCTCTCTTGCCAACCTTGTAGCGACTGTCCCACATGCGAAAGAGTCGAACGGAAAAATGGAGTGGCTGTGTTGTTTACCCACGTCCTGTTACCCGACCTGCGCAAGGAGTAAGAGGCGGACCAGGCCCTCGGTAAGGTGCGCGATTGGATGAACAAGTCCGAACGACCGCCTAAACCAACATTGTGGG
*****************************************************************************************************..((.((((...((......(((((((..(((.....))))))).))).....)))))))).....************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 M020
head
 V118
embryo
 V119
head
 V117
male body
....................................................AAACCTGTCAGCCTCTCTTGCC................................................................................................................................................................................. 22 3 1 4.00 4 1 3 0 0 0
................................................................................................................................................................................................................TGGATGAACAAGTCCGAACGACCGCC................. 26 0 15 1.07 16 16 0 0 0 0
................................................................................................................................................................................................................TGGATGAACAAGTCCGAACGACCG................... 24 0 15 0.87 13 13 0 0 0 0
............................................AACATGGTAACGCTGACAGCCT......................................................................................................................................................................................... 22 0 20 0.85 17 10 3 3 0 1
...........................................CAACATGGTAACGCTGACAGCCT......................................................................................................................................................................................... 23 0 20 0.60 12 8 3 1 0 0
...........................................CAACATGGTAACGCTGACAGCC.......................................................................................................................................................................................... 22 0 20 0.55 11 8 2 1 0 0
............................................AACATGGTAACGCTGACAGCCTC........................................................................................................................................................................................ 23 0 20 0.40 8 8 0 0 0 0
................................................................................................................................................................................................................TGGATGAACAAGTCCGAACGACC.................... 23 0 17 0.35 6 6 0 0 0 0
.....................................................AACCTGTCAGCCTCTCTTGCC................................................................................................................................................................................. 21 3 3 0.33 1 0 1 0 0 0
.....................................................................................................AAAGAGTCGAACGGAAAAATGGAG.............................................................................................................................. 24 0 17 0.29 5 3 0 1 0 1
............................................AACATGGTAACGCTGACAGCCTCTC...................................................................................................................................................................................... 25 0 19 0.26 5 4 0 1 0 0
............................................AACATGGTAACGCTGACAGCCTCT....................................................................................................................................................................................... 24 0 20 0.25 5 4 1 0 0 0
...GAAACAGTTCGACGTGCA...................................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 1 0
............................................AACATGGTAACGCTGACAGCCTCTCT..................................................................................................................................................................................... 26 0 19 0.21 4 4 0 0 0 0
...........................................CAACATGGTAACGCTGACAGCCTC........................................................................................................................................................................................ 24 0 20 0.20 4 3 0 1 0 0
.....AACAGTCCGACGATCAGATT.................................................................................................................................................................................................................................. 20 3 5 0.20 1 1 0 0 0 0
...................................GTGGTACACAACATGGTAACGCTG................................................................................................................................................................................................ 24 0 20 0.15 3 3 0 0 0 0
.............................................................................................CACATGCGAAAGAGTCGAACGGA....................................................................................................................................... 23 0 20 0.15 3 1 0 1 0 1
................................................................................................................................................................................................................TGGATGAACAAGTCCGAACGACCGC.................. 25 0 15 0.13 2 1 0 0 0 1
..........................................................................................................GTCGAACGGAAAAATGGAGTGG........................................................................................................................... 22 0 17 0.12 2 2 0 0 0 0
...........................................................................................................TCGAACGGAAAAATGGAGTGG........................................................................................................................... 21 0 17 0.12 2 2 0 0 0 0
..................................................................................................................................................TCCTGTTACCCGACCTGCGCA.................................................................................... 21 0 9 0.11 1 0 0 1 0 0
..................................................................................................................................................TCCTGTTACCCGACCTGCGC..................................................................................... 20 0 9 0.11 1 1 0 0 0 0
..................................................................................................................................................TCCTGTTACCCGACCTGCGCAAGGAG............................................................................... 26 0 9 0.11 1 1 0 0 0 0
..........................................................................................................................................................................................................CGCGATTGGATGAACAAGTCCGAACG....................... 26 0 18 0.11 2 2 0 0 0 0
.....................................................AACCTGTCAGCCTCTCTTGC.................................................................................................................................................................................. 20 3 9 0.11 1 1 0 0 0 0
...........................................CAACATGGTAACGCTGACAGCCTCTC...................................................................................................................................................................................... 26 0 19 0.11 2 2 0 0 0 0
...........................................CAACATGGTAACGCTGACAGCCTCT....................................................................................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0
.............................................................................................CACATGCGAAAGAGTCGAACGG........................................................................................................................................ 22 0 20 0.10 2 0 0 2 0 0
.............................................ACATGGTAACGCTGACAGCCT......................................................................................................................................................................................... 21 0 20 0.10 2 2 0 0 0 0
..................................................................................................................................................................................GCGGACCAGGCCCTCGGTAAGGTGCGC.............................................. 27 0 11 0.09 1 1 0 0 0 0
.....................................................................................................................................................................................GACCAGGCCCTCGGTAAGGTGCGC.............................................. 24 0 12 0.08 1 0 0 1 0 0
.................................................................................................................................................................................GGCGGACCAGGCCCTCGGTAAGGTG................................................. 25 0 12 0.08 1 1 0 0 0 0
...GAAACAGTTCGACGTGCAAA.................................................................................................................................................................................................................................... 20 3 13 0.08 1 0 0 0 1 0
................................................................................................................................................................................AGGCGGACCAGGCCCTCGGTAAG.................................................... 23 0 13 0.08 1 1 0 0 0 0
...................................................................................................................................................................................CGGACCAGGCCCTCGGTAAGGT.................................................. 22 0 13 0.08 1 1 0 0 0 0
................................................................................................................................................................................AGGCGGACCAGGCCCTCGGTA...................................................... 21 0 14 0.07 1 1 0 0 0 0
................................................................................................................................................................................AGGCGGACCAGGCCCTCGGTAA..................................................... 22 0 14 0.07 1 1 0 0 0 0
...............................................................................TGTAGCGACTGTCCCACATGCGAAAGAG................................................................................................................................................ 28 0 15 0.07 1 1 0 0 0 0
.............................................................................................................................................................................................................GATTGGATGAACAAGTCCGAACGACCGC.................. 28 0 15 0.07 1 1 0 0 0 0
................................................................................................................................................................................................................TGGATGAACAAGTCCGAACGACCGCCT................ 27 0 15 0.07 1 1 0 0 0 0
.............................................................................................................................................................................................................GATTGGATGAACAAGTCCGAACGACCG................... 27 0 15 0.07 1 1 0 0 0 0
....................................................................................................................................................................................................................TGAACAAGTCCGAACGACCGCCT................ 23 0 15 0.07 1 1 0 0 0 0
................................................................................................................................................................................................................TGGATGAACAAGTCCGAACGACCGCCTA............... 28 0 15 0.07 1 1 0 0 0 0
...............................................................................TGTAGCGACTGTCCCACATGCGAAAG.................................................................................................................................................. 26 0 15 0.07 1 1 0 0 0 0
................................................................................................................................................................................................................TGGGTGAACAAGTCCGAACGACCGCC................. 26 1 15 0.07 1 1 0 0 0 0
................................................................................................................................................................................................................TGGATGAACAAGTCCGAACGGCCGC.................. 25 1 15 0.07 1 1 0 0 0 0
.....................................................................................................................................................................................................AGGTGCGCGATTGGATGAACAAG............................... 23 0 16 0.06 1 0 0 1 0 0
..................................................................................AGCGACTGTCCCACATGCGAAAG.................................................................................................................................................. 23 0 16 0.06 1 1 0 0 0 0
...................................................................................................................................................................................................TAAGGTGCGCGATTGGATGAACAAG............................... 25 0 16 0.06 1 0 0 1 0 0
....................................................................................................................................................................................................AAGGTGCGCGATTGGATGAACAAGT.............................. 25 0 16 0.06 1 0 0 1 0 0
..................................................................................AGCGACTGTCCCACATGCGAAAGA................................................................................................................................................. 24 0 16 0.06 1 1 0 0 0 0
.....................................................................................................AAAGAGTCGAACGGAAAAATGGAGTG............................................................................................................................ 26 0 17 0.06 1 0 0 1 0 0
............................................................................................................CGAACGGAAAAATGGAGTG............................................................................................................................ 19 0 17 0.06 1 1 0 0 0 0
......................................................................................................AAGAGTCGAACGGAAAAATGGAG.............................................................................................................................. 23 0 17 0.06 1 1 0 0 0 0
..............................................................................................................AACGGAAAAATGGAGTGG........................................................................................................................... 18 0 17 0.06 1 0 0 1 0 0
................................................................................................................................................................................................CGGTAAGGTGCGCGATTGGATGAACA................................. 26 0 17 0.06 1 1 0 0 0 0
..................................................................................................................................................................................................GTAAGGTGCGCGATTGGATGAACA................................. 24 0 17 0.06 1 1 0 0 0 0
.............................................................................CTTGTAGCGACCGTCCCACATGCG...................................................................................................................................................... 24 1 18 0.06 1 1 0 0 0 0
................................................................................................................................................................................................CGGTAAGGTGCGCGATTGGATGA.................................... 23 0 18 0.06 1 1 0 0 0 0
........................................................................................................................................................................................................TGCGCGATTGGATGAACAAGTCCGAA......................... 26 0 18 0.06 1 1 0 0 0 0
.............................................................................................................................................................................................................AGCTGGATGAACAAGTCCGAACGACC.................... 26 3 18 0.06 1 1 0 0 0 0
...........................................................................................................................................................................................GCCCTCGGTAAGGTGCGCGATTGG........................................ 24 0 18 0.06 1 1 0 0 0 0
..........................................................................................................................................................................................................CGCGATTGGATGAACAAGTCCGAA......................... 24 0 18 0.06 1 0 0 1 0 0
.............................................................................CTTGTAGCGACTGTCCCACATGCGA..................................................................................................................................................... 25 0 18 0.06 1 1 0 0 0 0
................................................................................................................................................................................................................TGGATGAACAAGTCCGAACGAC..................... 22 0 19 0.05 1 1 0 0 0 0
.............................................................................CTTGTAGCGACTGTCCCACATGC....................................................................................................................................................... 23 0 19 0.05 1 1 0 0 0 0
............................................................................................................................................................................................CCCTCGGTAAGGTGCGCGATTGG........................................ 23 0 19 0.05 1 1 0 0 0 0
.............................................................................................................................................................................................................GATTGGATGAACAAGTCCGAACG....................... 23 0 19 0.05 1 1 0 0 0 0
.................................................................................................TGCGAAAGAGTCGAACGGAAAAATGG................................................................................................................................ 26 0 19 0.05 1 1 0 0 0 0
.............................................................................CTTGTAGCGACTGTCCCACATG........................................................................................................................................................ 22 0 19 0.05 1 1 0 0 0 0
................................................TGGTAACGCTGACAGCCTCTCT..................................................................................................................................................................................... 22 0 19 0.05 1 0 0 1 0 0
............................................AACATGGTAACGCTGACAGCCG......................................................................................................................................................................................... 22 1 20 0.05 1 0 1 0 0 0
......................................GTACACAACATGGTAACGCTGA............................................................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
......................................GTACACAACATGGTAACGCTGACAGCC.......................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
......................................GTACACAACATGGTAACGCTG................................................................................................................................................................................................ 21 0 20 0.05 1 0 0 1 0 0
............................................AACATGGTAACCCTGACAGCCT......................................................................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0
...........................................CAACATGGTAACACTGACAGCCT......................................................................................................................................................................................... 23 1 20 0.05 1 0 1 0 0 0
.............................................................................................CACATGCGAAAGAGTCGAACGGAAAAA................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
...............................................ATGGTAACGCTGACAGCCTC........................................................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0
............................................AACATGGTAACACTGACAGCCT......................................................................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0
...........................................CAACATGGTAACGCTGACAGC........................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
..........................................ACATCATGGTAACGCTGC............................................................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0
........................................................................................................................................................AACCCCACCTGCGCCAGGA................................................................................ 19 3 20 0.05 1 1 0 0 0 0
..............................................................................................ACATGCGAAAGAGTCGAACGGAA...................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
................................................................................................ATGCGAAAGAGTCGAACGGAAAA.................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
...........................................................................................CCCACATGCGAAAGAGTCGAACGG........................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0
........................................ACACAACATGGTAACGCTGACAG............................................................................................................................................................................................ 23 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

AGACGTTGTCATGCTGCACGTCTAAGTCGTGGCTTCACCATGTGTTGTACCATTGCGACTGTCGGAGAGAACGGTTGGAACATCGCTGACAGGGTGTACGCTTTCTCAGCTTGCCTTTTTACCTCACCGACACAACAAATGGGTGCAGGACAATGGGCTGGACGCGTTCCTCATTCTCCGCCTGGTCCGGGAGCCATTCCACGCGCTAACCTACTTGTTCAGGCTTGCTGGCGGATTTGGTTGTAACACCC
************************************************************************************..((.((((...((......(((((((..(((.....))))))).))).....)))))))).....***************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
 V117
male body		 V119
head
............................................................................GGAACATCGCTGACAGGGTGTACGCTT.................................................................................................................................................... 27 0 16 5.13 82 30 50 0 2 0
..............................................................................................................................................................................................GAGCCATTCCACGCGCTAACCTACTTGT................................. 28 0 17 4.59 78 71 7 0 0 0
.................................................................................................ACGCTTTCTCAGCTTGCCTTTTTACCT............................................................................................................................... 27 0 17 3.47 59 36 23 0 0 0
...............................................................................................................................................................................................AGCCATTCCACGCGCTAACCTACTTGT................................. 27 0 17 2.88 49 39 10 0 0 0
................................................................................................................................................................................................GCCATTCCACGCGCTAACCTACTTGT................................. 26 0 17 1.59 27 19 8 0 0 0
.................................................................................................................................................................................................CCATTCCACGCGCTAACCTACTTGT................................. 25 0 17 1.53 26 19 7 0 0 0
.....................................................................................................................................................................................................TCCACGCGCTAACCTACTTGTTCAGGCTT......................... 29 0 16 1.06 17 13 0 3 1 0
....................................................................GAACAATTGGAACATCGCTGG.................................................................................................................................................................. 21 3 1 1.00 1 1 0 0 0 0
....................................ACCATGTGTTGTACCATTGCGACTGT............................................................................................................................................................................................. 26 0 20 0.95 19 0 19 0 0 0
...............................................................................................GTACGCTTTCTCAGCTTGCCTTTT.................................................................................................................................... 24 0 20 0.95 19 17 1 1 0 0
......................................................................................TGACAGGGTGTACGCTTTCTCAGCT............................................................................................................................................ 25 0 19 0.95 18 8 10 0 0 0
..........................................................................................AGGGTGTACGCTTTCTCAGCTTGCCT....................................................................................................................................... 26 0 20 0.90 18 7 11 0 0 0
..........................................................................................................................................................................................CCGGGAGCCATTCCACGCGCTAACCT....................................... 26 0 18 0.83 15 12 3 0 0 0
............................................................................GGAACATCGCTGACAGGGTGTACGCT..................................................................................................................................................... 26 0 18 0.78 14 7 7 0 0 0
............................................................................................................................................................................................GGGAGCCATTCCACGCGCTAACCTACT.................................... 27 0 18 0.78 14 9 5 0 0 0
...........................................................................................................................................................................................CGGGAGCCATTCCACGCGCTAACCTACT.................................... 28 0 18 0.72 13 4 9 0 0 0
.....................................CCATGTGTTGTACCATTGCGACTGT............................................................................................................................................................................................. 25 0 20 0.70 14 0 14 0 0 0
..........................................................................................................................................................................................CCGGGAGCCATTCCACGCGCTAACCTACT.................................... 29 0 18 0.67 12 11 1 0 0 0
.........................................GTGTTGTACCATTGCGACTGTCGGAG........................................................................................................................................................................................ 26 0 19 0.63 12 8 4 0 0 0
.............................................................................GAACATCGCTGACAGGGTGTACGCTT.................................................................................................................................................... 26 0 16 0.63 10 3 7 0 0 0
.........................................GTGTTGTACCATTGCGACTGTCGGA......................................................................................................................................................................................... 25 0 20 0.60 12 3 9 0 0 0
.....................................................................................................................................................................................................TCCACGCGCTAACCTACTTGTTCAG............................. 25 0 16 0.56 9 3 6 0 0 0
...........................................................................................GGGTGTACGCTTTCTCAGCTTGCCTT...................................................................................................................................... 26 0 20 0.55 11 11 0 0 0 0
..........................................................................................AGGGTGTACGCTTTCTCAGCTTGCCTT...................................................................................................................................... 27 0 20 0.55 11 6 5 0 0 0
.............................................................................................GTGTACGCTTTCTCAGCTTGCCTTTT.................................................................................................................................... 26 0 20 0.55 11 6 5 0 0 0
............................................................................................GGTGTACGCTTTCTCAGCTTGCCT....................................................................................................................................... 24 0 20 0.55 11 10 1 0 0 0
...................................CACCATGTGTTGTACCATTGCGACTGT............................................................................................................................................................................................. 27 0 20 0.55 11 5 6 0 0 0
......................................................................................................................................................................................................CCACGCGCTAACCTACTTGTTCAGGCTT......................... 28 0 16 0.50 8 7 0 1 0 0
..................................................................................................................................................................................CGCCTGGTCCGGGAGCCATTCCAC................................................. 24 0 12 0.50 6 2 4 0 0 0
...........................................GTTGTACCATTGCGACTGTCGGAGAG...................................................................................................................................................................................... 26 0 19 0.47 9 3 6 0 0 0
...............................................................................................GTACGCTTTCTCAGCTTGCCTTTTTACCT............................................................................................................................... 29 0 17 0.47 8 8 0 0 0 0
..............................................................................................................................................................................TCTCCGCCTGGTCCGGGAGCCATT..................................................... 24 0 13 0.46 6 4 2 0 0 0
...........................................................................................................................................................................................CGGGAGCCATTCCACGCGCTAACCT....................................... 25 0 18 0.44 8 0 8 0 0 0
....................................................................................................................................................GACAATGGGCTGGACGCGTTCCT................................................................................ 23 0 9 0.44 4 3 1 0 0 0
.................................................................................................ACGCTTTCTCAGCTTGCCTTTTTACC................................................................................................................................ 26 0 19 0.42 8 8 0 0 0 0
..................................................................................................................................................................................................CATTCCACGCGCTAACCTACTTGTT................................ 25 0 17 0.41 7 5 2 0 0 0
......................................................................................................................................................................................................CCACGCGCTAACCTACTTGTTCAGGCT.......................... 27 0 16 0.38 6 4 0 2 0 0
..................................................................................................................................................................................................CATTCCACGCGCTAACCTACTTGT................................. 24 0 17 0.35 6 4 2 0 0 0
...........................................................................................GGGTGTACGCTTTCTCAGCTTGCCT....................................................................................................................................... 25 0 20 0.35 7 6 1 0 0 0
.......................................................................................................................................................................................................................TGTTCAGGCTTGCTGGCGGATTTGGT.......... 26 0 3 0.33 1 0 1 0 0 0
..............................................................................................................................................................................................GAGCCATTCCACGCGCTAACCTACT.................................... 25 0 18 0.33 6 5 1 0 0 0
..............................................................................................................................................................................................GAGCCATTCCACGCGCTAACCTACTT................................... 26 0 18 0.33 6 6 0 0 0 0
.....................................................................................................................................................................................................TCCACGCGCTAACCTACTTGTTCAGGC........................... 27 0 16 0.31 5 5 0 0 0 0
...........................................................................TGGAACATCGCTGACAGGGTGTACGCTT.................................................................................................................................................... 28 0 16 0.31 5 4 1 0 0 0
..............................................................................................................................................................................TCTCCGCCTGGTCCGGGAGCCAT...................................................... 23 0 13 0.31 4 2 2 0 0 0
..................................................................................................CGCTTTCTCAGCTTGCCTTTTTACCT............................................................................................................................... 26 0 17 0.29 5 3 2 0 0 0
...............................................................................................................................................................................................AGCCATTCCACGCGCTAACCTACTTGTT................................ 28 0 17 0.29 5 5 0 0 0 0
............................................................................GGAACATCGCTGACAGGGTGTACGC...................................................................................................................................................... 25 0 18 0.28 5 2 3 0 0 0
.................................................................................................................................................................................CCGCCTGGTCCGGGAGCCATTCCAC................................................. 25 0 12 0.25 3 1 2 0 0 0
.....................................................................................................................................................................................................TCCACGCGCTAACCTACTTGTTCAGGCT.......................... 28 0 16 0.25 4 3 0 1 0 0
......................................................................................................................................................................................TGGTCCGGGAGCCATTCCACGCGCT............................................ 25 0 12 0.25 3 1 2 0 0 0
....................................................................................GCTGACAGGGTGTACGCTTTCTCAGCT............................................................................................................................................ 27 0 16 0.25 4 4 0 0 0 0
..............................................................................AACATCGCTGACAGGGTGTACGCTT.................................................................................................................................................... 25 0 16 0.25 4 1 3 0 0 0
.............................................................................................................................................................................................GGAGCCATTCCACGCGCTAACCTACTT................................... 27 0 18 0.22 4 2 2 0 0 0
...................................................................................................................................................GGACAATGGGCTGGACGCGTTCCT................................................................................ 24 0 9 0.22 2 1 1 0 0 0
................................................................................................................................................................................TCCGCCTGGTCCGGGAGCCAT...................................................... 21 0 14 0.21 3 0 3 0 0 0
............................................................................................GGTGTACGCTTTCTCAGCTTGCCTT...................................................................................................................................... 25 0 20 0.20 4 4 0 0 0 0
..........................................................................................AGGGTGTACGCTTTCTCAGCTTGCCTTT..................................................................................................................................... 28 0 20 0.20 4 4 0 0 0 0
...........................................................................................GGGTGTACGCTTTCTCAGCTTGCCTTTT.................................................................................................................................... 28 0 20 0.20 4 4 0 0 0 0
.....................................................................................................................................................................................................TCCACGCGCTAACCTACTTGTTCAGG............................ 26 0 16 0.19 3 3 0 0 0 0
.......................................................................................................................................................................................................CACGCGCTAACCTACTTGTTCAGGCTT......................... 27 0 16 0.19 3 3 0 0 0 0
.............................................................................GAACATCGCTGACAGGGTGTACGCTTT................................................................................................................................................... 27 0 16 0.19 3 1 2 0 0 0
.................................................................................................................................................................................CCGCCTGGTCCGGGAGCCATTCCACGCGC............................................. 29 0 11 0.18 2 2 0 0 0 0
.............................................................................................................................................................................................GGAGCCATTCCACGCGCTAACCTACTTGT................................. 29 0 17 0.18 3 3 0 0 0 0
.......................................................................................................TCTCAGCTTGCCTTTTTACCT............................................................................................................................... 21 0 17 0.18 3 1 2 0 0 0
..............................................................................................................................................................................................GAGCCATTCCACGCGCTAACCTACTTGTT................................ 29 0 17 0.18 3 3 0 0 0 0
................................................................................................................................................................................................GCCATTCCACGCGCTAACCTACTTGTT................................ 27 0 17 0.18 3 2 1 0 0 0
.....................................................................................................................................................................................CTGGTCCGGGAGCCATTCCACGCGCT............................................ 26 0 12 0.17 2 2 0 0 0 0
.....................................................................................................................................................................................CTGGTCCGGGAGCCATTCCACGCGC............................................. 25 0 12 0.17 2 2 0 0 0 0
...........................................................................TGGAACATCGCTGACAGGGTGTACGC...................................................................................................................................................... 26 0 18 0.17 3 0 3 0 0 0
...........................................................................................................................................................................................CGGGAGCCATTCCACGCGCTAACCTACTT................................... 29 0 18 0.17 3 2 1 0 0 0
.........................................GTGTTGTACCATTGCGACTGTCGGAGA....................................................................................................................................................................................... 27 0 19 0.16 3 2 1 0 0 0
............................................................................................................................................................................................GGGAGCCATTCCACGCGCTAACCT....................................... 24 0 19 0.16 3 3 0 0 0 0
..................................TCACCATGTGTTGTACCATTGCGAC................................................................................................................................................................................................ 25 0 20 0.15 3 0 2 0 1 0
..................................TCACCATGTGTTGTACCATTGCGACTGT............................................................................................................................................................................................. 28 0 20 0.15 3 2 1 0 0 0
.................................................................................................ACGCTTTCTCAGCTTGCCTTTTTAC................................................................................................................................. 25 0 20 0.15 3 2 1 0 0 0
........................................................................................ACAGGGTGTACGCTTTCTCAGCTTGCCT....................................................................................................................................... 28 0 20 0.15 3 3 0 0 0 0
...............................................................................................................................................................................CTCCGCCTGGTCCGGGAGCCAT...................................................... 22 0 14 0.14 2 1 1 0 0 0
..............................................................................AACATCGCTGACAGGGTGTACGCTTTC.................................................................................................................................................. 27 0 15 0.13 2 2 0 0 0 0
...................................................................................CGCTGACAGGGTGTACGCTTTCT................................................................................................................................................. 23 0 16 0.13 2 2 0 0 0 0
.............CTGCCCGTCGAAGTCGTG............................................................................................................................................................................................................................ 18 2 8 0.13 1 0 0 0 1 0
........................................................................................................................................................................................................................GTTCAGGCTTGCTGGCGGATTT............. 22 0 16 0.13 2 2 0 0 0 0
..................................................................................TCGCTGACAGGGTGTACGCTTTCT................................................................................................................................................. 24 0 16 0.13 2 1 1 0 0 0
......................................................................................................................................................................................................CCACGCGCTAACCTACTTGTTCAGGC........................... 26 0 16 0.13 2 0 0 2 0 0
...................................................................................CGCTGACAGGGTGTACGCTTTCTCAGCT............................................................................................................................................ 28 0 16 0.13 2 2 0 0 0 0
...................................................................................................GCTTTCTCAGCTTGCCTTTTTACCT............................................................................................................................... 25 0 17 0.12 2 1 1 0 0 0
..........................................................................................................................................................................................................................TCAGGCTTGCTGGCGGATTT............. 20 0 17 0.12 2 1 1 0 0 0
...............................................................................................................................................................................................AGCCATTCCACGCGCTAACCTACTTG.................................. 26 0 17 0.12 2 2 0 0 0 0
............................................................................................................................................................................................GGGAGCCATTCCACGCGCTAACCTACTT................................... 28 0 18 0.11 2 1 1 0 0 0
.....................................................................................................................................................................................................................................GGCGGAATTGGTTGTCACCC.. 20 3 9 0.11 1 1 0 0 0 0
.....................................................................................................................................................ACAATGGGCTGGACGCGTTCCT................................................................................ 22 0 9 0.11 1 1 0 0 0 0
.............................................................................................................................................................................................GGAGCCATTCCACGCGCTAACCTAC..................................... 25 0 18 0.11 2 0 2 0 0 0
..........................................................................................................................................................................................................GCGCTAACCTACTTGTTCAGGCTTGCT...................... 27 0 18 0.11 2 2 0 0 0 0
................................................................................................................................................................................................GCCATTCCACGCGCTAACCTACT.................................... 23 0 18 0.11 2 1 1 0 0 0
..........................................................................................................................................................................................CCGGGAGCCATTCCACGCGCTAACCTA...................................... 27 0 18 0.11 2 1 1 0 0 0
.................................................................................................................................................CAGGACAATGGGCTGGACGCGTTCCT................................................................................ 26 0 9 0.11 1 1 0 0 0 0
..................................................................................................................................................AGGACAATGGGCTGGACGCGTTCCT................................................................................ 25 0 9 0.11 1 1 0 0 0 0
.................................................................................................................................................CAGGACAATGGGCTGGACGCGTT................................................................................... 23 0 9 0.11 1 0 1 0 0 0
...........................................................................................................................................................................................CGGGAGCCATTCCACGCGCTAACCTAC..................................... 27 0 18 0.11 2 1 1 0 0 0
.................................................................................................................................................CAGGACAATGGGCTGGACGCGTTC.................................................................................. 24 0 9 0.11 1 0 1 0 0 0
................................................ACCATTCCGACTATCGGGGAGA..................................................................................................................................................................................... 22 3 19 0.11 2 0 0 0 0 2
......................................................................................TGACAGGGTGTACGCTTTCTCAGC............................................................................................................................................. 24 0 19 0.11 2 2 0 0 0 0
...............................................................................................GTACGCTTTCTCAGCTTGCCTTT..................................................................................................................................... 23 0 20 0.10 2 2 0 0 0 0
...........................................GTTGTACCATTGCGACTGTCGGAG........................................................................................................................................................................................ 24 0 20 0.10 2 1 1 0 0 0
..........................................................................................AGGGTGTACGCTTTCTCAGCTTGC......................................................................................................................................... 24 0 20 0.10 2 0 2 0 0 0
.......................................................................................GACAGGGTGTACGCTTTCTCAGCTTGCC........................................................................................................................................ 28 0 20 0.10 2 2 0 0 0 0
...........................................................................................GGGTGTACGCTTTCTCAGCTTGCCTTT..................................................................................................................................... 27 0 20 0.10 2 1 1 0 0 0
.........................................................................................CAGGGTGTACGCTTTCTCAGCTTGCCTT...................................................................................................................................... 28 0 20 0.10 2 2 0 0 0 0
........................................................................................ACAGGGTGTACGCTTTCTCAGCTTGCC........................................................................................................................................ 27 0 20 0.10 2 2 0 0 0 0
..............................................................................................TGTACGCTTTCTCAGCTTGCCTTTT.................................................................................................................................... 25 0 20 0.10 2 0 2 0 0 0
...................................CACCATGTGTTGTACCATTGCGACT............................................................................................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0
.......................................................................................................................................................................................GGTCCGGGAGCCATTCCACGCGCT............................................ 24 0 12 0.08 1 1 0 0 0 0
.......................................................................................................................................................................................GGTCCGGGAGCCATTCCACGCGCTA........................................... 25 0 12 0.08 1 1 0 0 0 0
.................................................................................................................................................................................CCGCCTGGTCCGGGAGCCATTCCACG................................................ 26 0 12 0.08 1 1 0 0 0 0
.......................................................................................................................................................................................GGTCCGGGAGCCATTCCACGCGCTAAC......................................... 27 0 12 0.08 1 1 0 0 0 0
.......................................................................................................................................................................................GGTCCGGGAGCCATTCCACGCGC............................................. 23 0 12 0.08 1 1 0 0 0 0
.................................................................................................................................................................................CCGCCTGGTCCGGGAGCCATTCCA.................................................. 24 0 12 0.08 1 1 0 0 0 0
....................................................................................................................................................................................CCTGGTCCGGGAGCCATTCCACGCGC............................................. 26 0 12 0.08 1 1 0 0 0 0
.................................................................................................................................................................................CCGCCTGGTCCGGGAGCCATTCCACGC............................................... 27 0 12 0.08 1 0 1 0 0 0
.......................................................................................................................................................................................GGTCCGGGAGCCATTCCACGCG.............................................. 22 0 12 0.08 1 1 0 0 0 0
...............................................................................................................................................................................CTCCGCCTGGTCCGGGAGCCATTCCAC................................................. 27 0 12 0.08 1 1 0 0 0 0
................................................................................................................................................................................ACCGCCTGGTCCGGGAGCCATTCCAC................................................. 26 1 12 0.08 1 1 0 0 0 0
................................................................................................................................................................................TCCGCCTGGTCCGGGAGCCATTCCAC................................................. 26 0 12 0.08 1 1 0 0 0 0
...............................................................................................................................................................................CTCCGCCTGGTCCGGGAGCCATTC.................................................... 24 0 13 0.08 1 0 1 0 0 0
......................................................................................................................................................................................AGGTCCGGGAGCCATTCCACGCGCT............................................ 25 1 13 0.08 1 1 0 0 0 0
.............................................................................................................................................................................TTCTCCGCCTGGTCCGGGAGCCAT...................................................... 24 0 13 0.08 1 1 0 0 0 0
....................................................................................................................................................................................CCTGGTCCGGGAGCCATTCCACGC............................................... 24 0 13 0.08 1 0 1 0 0 0
..................................................................................................................................................................................CGCCTGGTCCGGGAGCCAT...................................................... 19 0 14 0.07 1 0 1 0 0 0
....................................................................................................................................................................................ACTGGTCCGGGAGCCATTCCACGCGC............................................. 26 1 14 0.07 1 1 0 0 0 0
................................................................................................................................................................................TCCGCCTGGTCCGGGAGCCATT..................................................... 22 0 14 0.07 1 1 0 0 0 0
.................................................................................ATCGCTGACAGGGTGTACGCTTTCT................................................................................................................................................. 25 0 15 0.07 1 1 0 0 0 0
..............................................................................AACATCGCTGACAGGGTGTACGCTTTCT................................................................................................................................................. 28 0 15 0.07 1 0 1 0 0 0
...................................................................................................................................................................................GCCTGGTCCGGGAGCCATT..................................................... 19 0 15 0.07 1 0 1 0 0 0
...............................................................................ACATCGCTGACAGGGTGTACGCTTTCT................................................................................................................................................. 27 0 15 0.07 1 0 1 0 0 0
.................................................................................ATCGCTGACAGGGTGTACGCTTTCTC................................................................................................................................................ 26 0 15 0.07 1 1 0 0 0 0
..................................................................................................................................................................................................................CTACTTGTTCAGGCTTGCTGGCGGAT............... 26 0 15 0.07 1 0 1 0 0 0
................................................................................CATCGCTGACAGGGTGTACGCTTTC.................................................................................................................................................. 25 0 15 0.07 1 1 0 0 0 0
......................................................................................................................................................................................................CCACGCGCTAACCTACTTGTTCAG............................. 24 0 16 0.06 1 1 0 0 0 0
........................................................................................................................................................................................GTCCGGGAGCCATTCCACGCGCT............................................ 23 0 16 0.06 1 1 0 0 0 0
.....................................................................................................................................................................................................TCCACGCGCTAACCTACTTGTTC............................... 23 0 16 0.06 1 1 0 0 0 0
...............................................................................ACATCGCTGACAGGGTGTACGCTT.................................................................................................................................................... 24 0 16 0.06 1 0 1 0 0 0
...................................................................................CGCTGACAGGGTGTACGCTTTCTCA............................................................................................................................................... 25 0 16 0.06 1 1 0 0 0 0
.......................................................................................................................................................................................................................TGTTCAGGCTTGCTGGCGGATTT............. 23 0 16 0.06 1 0 1 0 0 0
...................................................................................................................................................................................................ATTCCACGCGCTAACCTACTTGTTCAGGC........................... 29 0 16 0.06 1 1 0 0 0 0
.....................................................................................................................................................................................................................CTTGTTCAGGCTTGCTGGCGGATTT............. 25 0 16 0.06 1 0 1 0 0 0
...................................................................................CGCTGACAGGGTGTACGCTTTC.................................................................................................................................................. 22 0 16 0.06 1 1 0 0 0 0
.......................................................................................................................................................................................................CACGCGCTAACCTACTTGTTCAGGC........................... 25 0 16 0.06 1 0 1 0 0 0
............................................................................GGAACATCGCTGACAGGGAGTACGCTT.................................................................................................................................................... 27 1 16 0.06 1 0 1 0 0 0
............................................................................GGAACATCGCTGACAGGGTGTACGCTTT................................................................................................................................................... 28 0 16 0.06 1 1 0 0 0 0
............................................................................GGAACATCGCTGGCAGGGTGTACGCTT.................................................................................................................................................... 27 1 16 0.06 1 1 0 0 0 0
.....................................................................................CTGACAGGGTGTACGCTTTCTCAGCT............................................................................................................................................ 26 0 16 0.06 1 0 1 0 0 0
....................................................................................GCTGACAGGGTGTACGCTTTCT................................................................................................................................................. 22 0 16 0.06 1 1 0 0 0 0
...................................................................................................................................................................................................TCTCCACGCGCTAACCTACTTGTTCAGGC........................... 29 2 16 0.06 1 1 0 0 0 0
..................................................................................................................................................................................................CATTCCACGCGCTAACCTACTTGTTC............................... 26 0 16 0.06 1 1 0 0 0 0
............................................................................GGAACATCGCTGACAGGGTGTACGATTT................................................................................................................................................... 28 1 16 0.06 1 0 1 0 0 0
......................................................................................................................................................................................................CCACGCGCTAACCTACTTGTTCAGG............................ 25 0 16 0.06 1 0 1 0 0 0
............................................................................GGAACATCTCTGACAGGGTGTACGCTT.................................................................................................................................................... 27 1 17 0.06 1 0 1 0 0 0
.....................................................................................................TTTCTCAGCTTGCCTTTTTACCT............................................................................................................................... 23 0 17 0.06 1 0 1 0 0 0
.................................................................................................................................................................................................CCATTCCACGCGCTAACCTACTTGTT................................ 26 0 17 0.06 1 1 0 0 0 0
..............................................................................................................................................................................................GAGCCATTCCACGCGCTAACCTACTTG.................................. 27 0 17 0.06 1 1 0 0 0 0
..............................................................................................................................................................................................TAGCCATTCCACGCGCTAACCTACTTGT................................. 28 1 17 0.06 1 1 0 0 0 0
.................................................................................................................................................................................................CCATTCCACGCGCTAACCTACTTG.................................. 24 0 17 0.06 1 1 0 0 0 0
.....................................................................................................TTTCTCAGCTTGCCTTTTTACCTCA............................................................................................................................. 25 0 17 0.06 1 1 0 0 0 0
..............................................................................................................................................................................................GAGCCATTCCACGCGCTAACCTACCTGT................................. 28 1 17 0.06 1 1 0 0 0 0
.................................................................................................ACGCTTTCTCGGCTTGCCTTTTTACCT............................................................................................................................... 27 1 17 0.06 1 1 0 0 0 0
.....................................................................................................................................................................................................TCCACGCGCTAACCTGCTTGTTCAGGCTT......................... 29 1 17 0.06 1 1 0 0 0 0
......................................................................................................TTCTCAGCTTGCCTTTTTACCTCACC........................................................................................................................... 26 0 17 0.06 1 0 1 0 0 0
..............................................................................................................................................................................................GAGCCATTCCACGCGCTAACCTACTTGTC................................ 29 1 17 0.06 1 1 0 0 0 0
.............................................................................................................................................................................................TGAGCCATTCCACGCGCTAACCTACTTGT................................. 29 1 17 0.06 1 1 0 0 0 0
..............................................................................................................................................................................................TTGCCATTCCACGCGCTAACCTACTTGT................................. 28 2 17 0.06 1 0 1 0 0 0
.........................................................................................................................................................................................................CGCGCTAACCTACTTGTTCAGGCTT......................... 25 0 18 0.06 1 1 0 0 0 0
..............................................................................................................................................................................................GAGCCATTCCACGCGCTAACCTAC..................................... 24 0 18 0.06 1 1 0 0 0 0
..........................................................................................................................................................................................................GCGCTAACCTACTTGTTCAGGCTTG........................ 25 0 18 0.06 1 1 0 0 0 0
....................................................................................................................................................................................................TTCCACGCGCTAACCTACTTGT................................. 22 0 18 0.06 1 0 1 0 0 0
...............................................................................................................................................................................................AGCCATTCCACGCGCTAACCTACTT................................... 25 0 18 0.06 1 0 1 0 0 0
..........................................................................................................................................................................................CCGGGAACCATTCCACGCGCTAACCT....................................... 26 1 18 0.06 1 1 0 0 0 0
...............................................................................................................................................................................................AGCCATTCCACGCGCTAACCTACT.................................... 24 0 18 0.06 1 1 0 0 0 0
...........................................................................................................................................................................................CGGGAGCCATTCCACGCGCTAACCTGCT.................................... 28 1 18 0.06 1 0 1 0 0 0
..........................................................................................................................................................................................CCGGGAGCCATTCCACGCGCTAACCTAC..................................... 28 0 18 0.06 1 1 0 0 0 0
.................................................................................................................................................................................................CCATTCCACGCGCTAACCTACT.................................... 22 0 18 0.06 1 1 0 0 0 0
.............................................................................GAACATCGCTGACAGGGTGTACGC...................................................................................................................................................... 24 0 18 0.06 1 1 0 0 0 0
...........................................................................................................................................................................................CGGGAGCCATTCCACGCGCTAACC........................................ 24 0 18 0.06 1 0 1 0 0 0
...........................................................................................................................................................................................................CGCTAACCTACTTGTTCAGGCTTGCT...................... 26 0 18 0.06 1 0 1 0 0 0
..............................................................................................................................................................................................GAGCCATTCCACGCGCTAACCTACTTT.................................. 27 1 18 0.06 1 1 0 0 0 0
...........................................................................................................................................................................................CGGGAGCCGTTCCACGCGCTAACCT....................................... 25 1 18 0.06 1 0 1 0 0 0
...........................................................................................................................................................................................CGGGAGCCATTCCACGAGCTAACCTACT.................................... 28 1 18 0.06 1 1 0 0 0 0
...............................................................................................................................................................................................AGCCATTCCACGCGCTAACCTACTTTT................................. 27 1 18 0.06 1 1 0 0 0 0
.............................................................................................................................................................................................GGAGCCATTCCACGCGCTAACCTACT.................................... 26 0 18 0.06 1 1 0 0 0 0
............................................................................GGAACATCGCTGATAGGGTGTACGC...................................................................................................................................................... 25 1 18 0.06 1 1 0 0 0 0
.....................................................................................................................................................................................................TCCACGCGCTAACCTACTTGT................................. 21 0 18 0.06 1 1 0 0 0 0
..........................................................................................................................................................................................................GCGCTAACCTACTTGTTCAGGCTT......................... 24 0 18 0.06 1 1 0 0 0 0
..........................................................................................................................................................................................CCGGGAGCCATTCCACGCGCTAAC......................................... 24 0 18 0.06 1 1 0 0 0 0
............................................................................................................................................................................................GGGAGCCATTCCACGCGCTAACCTAC..................................... 26 0 18 0.06 1 1 0 0 0 0
.............................................................................GAACATCGCTGACAGGGTGTACGCT..................................................................................................................................................... 25 0 18 0.06 1 1 0 0 0 0
...................................................................................................................................................................................................ATTCCACGCGCTAACCTACTTGTT................................ 24 0 18 0.06 1 0 1 0 0 0
.............................................TGTACCATTGCGACTGTCGGAGAGA..................................................................................................................................................................................... 25 0 19 0.05 1 1 0 0 0 0
............................................................................GGAACATCGCTGACAGGGTGT.......................................................................................................................................................... 21 0 19 0.05 1 1 0 0 0 0
..................................................................................................CGCTTTCTCAGCTTGCCTTTTTACC................................................................................................................................ 25 0 19 0.05 1 1 0 0 0 0
......................................................................................TGACAGGGTGTACGCTTTCTCAGCTT........................................................................................................................................... 26 0 19 0.05 1 0 1 0 0 0
.......................................................................................................TCTCAGCTTGCCTTTTTACC................................................................................................................................ 20 0 19 0.05 1 0 1 0 0 0
...........................................................................TGGAACATCGCTGACAGGGTGTACG....................................................................................................................................................... 25 0 19 0.05 1 0 1 0 0 0
............................................TTGTACCATTGCGACTGTCGGAGAGA..................................................................................................................................................................................... 26 0 19 0.05 1 0 1 0 0 0
................................CTTCACCATGTGTTGTACCATTGCGAC................................................................................................................................................................................................ 27 0 19 0.05 1 1 0 0 0 0
............................................................................GGAACATCGCTGACAGAGTGTACGCT..................................................................................................................................................... 26 1 19 0.05 1 0 1 0 0 0
..............................................................................................................................................................................................GAGCCATTCCACGCGCTAACCTA...................................... 23 0 19 0.05 1 1 0 0 0 0
............................................................................GGAACATCGCTGACAGGGTGTACG....................................................................................................................................................... 24 0 19 0.05 1 0 1 0 0 0
...........................................................................TGGGACATCGCTGACAGGGTGT.......................................................................................................................................................... 22 1 19 0.05 1 0 1 0 0 0
......................................................................................TGACAGGGCGTACGCTTTCTCAGCT............................................................................................................................................ 25 1 19 0.05 1 0 1 0 0 0
................................................................................................................................................................................................GCCATTCCACTCGCTAACCTACTTGT................................. 26 1 19 0.05 1 0 1 0 0 0
....................................ACCATGTGTTGTACCATTGCGACTGTCG........................................................................................................................................................................................... 28 0 20 0.05 1 0 1 0 0 0
...................................CACCATGTGTTGTACCATCGCGACTGT............................................................................................................................................................................................. 27 1 20 0.05 1 0 1 0 0 0
..................................TCACCATGTGTTGTACCATTGCGACT............................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
...........................................................................................GGGTGTACGCTTTCTCAGCTTGCCTTTTT................................................................................................................................... 29 0 20 0.05 1 1 0 0 0 0
..........................................................................................AGGGTGTACGCTTTCTCAGCTTGCC........................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0
....................................ACCATGTGTTGTACCATTGCGACT............................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0
..........................................................................................AGGGTGTACCCTTTCTCAGCTTGCCT....................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0
.....................................CCATGTGTTGTACCATTGCGACTGTCG........................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
...........................................GTTGTACCATTGCGACTGTCGGAGA....................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
..................................TCACCATGTGTTGTACCATTGCGA................................................................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
......................................CATGTGTTGTACCATTGCGACTGT............................................................................................................................................................................................. 24 0 20 0.05 1 0 1 0 0 0
..................CGTCTAGGTCGTGGCCTTA...................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0
....................................ACCATGTGTTGTACCATTGCGAC................................................................................................................................................................................................ 23 0 20 0.05 1 0 1 0 0 0
.............................................................................................GTGTACGCTTTCTCAGCTTGCCTTT..................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
..........................................................................................AGGGTGTACGCTTTCTCAGCTTGCT........................................................................................................................................ 25 1 20 0.05 1 1 0 0 0 0
...........................................................................................GGGTGTACGCTTTCTCAGCTTGCC........................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0
.................................................................................................ACGCTTTCTCAGCTTGCCTTTT.................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
........................................TGTGTTGTACCATTGCGACTGTCGGA......................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0
.......................................ATGTGTTGTACCATTGCGACTGTCG........................................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
..........................................................................................TGGGTGTACGCTTTCTCAGCTTGCCTT...................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0
.................................................................................................ACGCTTTCTCAGCTTGCCTTTTTA.................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
................................................................................................TACGCTTTCTCAGCTTGCCTTTT.................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
............................................................................................GGTGTAAGCTTTCTCAGCTTGCCTTTT.................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0
....................................ACCATGTGTTGTACCATTGCGACTT.............................................................................................................................................................................................. 25 1 20 0.05 1 0 1 0 0 0
..........................................................................................GGGGTGTACGCTTTCTCAGCTTGCCTT...................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0
...............................................................................................GTACGCTTTCTCAGCTTGCCTT...................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
...................................CACCATGTGTTATACCATTGCGACTGT............................................................................................................................................................................................. 27 1 20 0.05 1 0 1 0 0 0
.......................................................................................GACAGGGTGTACGCTTTCTCAGCTTGC......................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
.......................................................................................GACAGGGTGTACGCTTTCTCAGCT............................................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0
..................................TCACCATGTGCTGTACCATTGCGAC................................................................................................................................................................................................ 25 1 20 0.05 1 0 1 0 0 0
.........................................................................................CAGGGTGTACGCTTTCTCAGCTTGCC........................................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0
............................................................................................GGTGTACGCTTTCTAAGCTTGCCTTT..................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0
....................................................TTTGGACAGTCGGAGAGAA.................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0
...................................................................................................................................................GGACTATTGGCTGTACGCG..................................................................................... 19 3 20 0.05 1 0 0 0 1 0
.......................................ATGTGTTGTACCATTGCGAC................................................................................................................................................................................................ 20 0 20 0.05 1 0 1 0 0 0
.............................................................................................GTGTACGCTTTCTCAGCTTGCCTT...................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
....................................ACCATGTGTTGCACCATTGCGACTGT............................................................................................................................................................................................. 26 1 20 0.05 1 0 1 0 0 0
..........................................TGTTGTACCATTGCGACTGTCGGAGA....................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................GAGCCATTCCACGCGCTAACC........................................ 21 0 20 0.05 1 1 0 0 0 0
...............................GCTTCACCATGTGTTGTACCATT..................................................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0
........................................TATGTTGTACCATTGCGACTGTCGGAGA....................................................................................................................................................................................... 28 1 20 0.05 1 0 1 0 0 0
.................................................................................................ACGCTTTCTCAGCTTGCCTTT..................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0
..........................................................................................AGGGTGTACGCTTTCTCAGCTTTCCT....................................................................................................................................... 26 1 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004711:5771-6021 + dwi_1895 TCTGCAACAGTACGACGTGCAGATTCAGCACCGAAGTGGTACACAACATGGTAACGCTGACAGCCTCTCTTGCCAACCTTGTAGCGACTGTCCCACATGCGAAAGAGTCGAACGGAAAAATGGAGTGGCTGTGTTGTTT-ACCCACGTCCTGTTACC----------CGACCTGCGCAAGGAGTAAGAGGCGGACCAGGCCCTCGGTAAGGTGCGCGATTGGATGAACAAGTCCGAACGACCGCCTAAACCAACATTGTGGG
droMoj3 scaffold_6482:492802-492935 + AC---AGCAATTCCAGTTCGACGTCCGTTATCGCCGGGGAAGCCTGAACGTGGCGGCCGATGCATTGTCTCGCCAACCCTTGGAGAGCTGCC--------------------------------------------------------------AGC----------AAGCATCGCCAGAGAGCC-----------------------------------------------------GGAGAAGTTTAGAGACTACGTGGT
dp5 Unknown_group_3:117704-117796 + ACTGTAGCAGTACAATATGGAGATTCAAAACCGCTCTGGAAC------------------------------TGGACTCTGCAACGATTGTTGCGTTTGCAAAAAAGCGGAAGAAAAGGCTGG-------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_136:48468-48563 - AC---AGCAATACCAATACGACGTGCAGTATCGGGCCGGCAACCAGAACGTAGTCGCTGACGCGCTGTCAAGACAACCATT-GGAG-----------------------------------------------------------------------ACCCTCTC-------------------------------------------------------------------------------------------CCGCAT
droBip1 scf7180000391922:13085-13162 + GTTGCAGCAGTATGACTACGTCATCAGCTACAGGAAGGGTAAGCTGAACGTGGCCGCCGACGCGCTATCTGGCCAGCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302423:4665-4912 + ACTCCAACAGTACAACATGGATATCCAGCACCGCAGTGGGAAGCAACATGTAAACGCCGACGCTTTGTCTCGTCGTCCTTGTGGCAAGTGCCGCGTATGCAC---AGCAGAACAAAACGACGGCCTCGAGATCATGTTT-CCACAGACCCAACCCTT----------AGACCTAGCTAGCAGCCAGAACAAGGACCCAAGTCTCGCATTGATCCGGCAGTGGCTGGAAAAAGGAGAGCGACCAAGTAAATCGACTACATGGA
droFic1 scf7180000453999:17663-17913 - TCTACAGCAGTACCATATGGACATTCAACACCGAAGTGGTAAACATCATGGAAACGCTGACGCTCTTTCACGCCGACCCTGTGGTGAATGCAGGGTGTGCGAAAAAGCTGAGCAGTCCGAAAGACCAGGAGTCCTCTTT-ATGCAAATCGAAGCTGT----------CGATTATGCCCAACTTCAACGACAGGACCCAACTTTAGCCGTGGTCCTATCATGGTTGGAAAATGGAAAACGACTCGTCAAATCCCAGATTTGGG
droEle1 scf7180000490071:43121-43365 + CCTCCAATAGTATGACATGGACATCCCACATCGTAG-------CAGAATGGGAGTTCAGGCGCCTTGTCTCGCCGACCATGTGGATACTGCCGCAAATGCAACAGAGCGGAACAATGCGATTCCCAAGGAGACATGTTTTTTTCAAGTACAACCCTC----------CGACTTGTCCAGCATCCAGGAAAATGATACCACTTTGGCGCTCATGTTACCTCGGAACCAAAAAGGACAAAGGCCACCAAAATCCACGAGATGGG
droRho1 scf7180000771710:8629-8879 - CCTCCAGCAATACGACATGGATATCCAGCACCGCAGTGGCAAGCTGCACGGTAACGCCGACGCCCTGTCTCGCCGCCCCTGTGGTGAATGCCGCATATGCACTAAGGCAGAACAAAAAGATGATCAAGGGATTTTGTTC-TTACAGGCCCAACCAGT----------CGACATTGCTATCAGCCAGGAAAAAGATCCCACTTTGTCGTTGATCCTGCAGTGGTTAAAAACAGGAGAACGACCAACTAAATCCACAACATGGA
droBia1 scf7180000302127:49766-49993 - CATCCAGCACT---------------------GCAGTGGCAAGCTGCACGGTAACGCCAACGCTCTGTCTCTCAGCCCATGTAGTGAATGCCACATTTGCACTATCGCAGAACAAAACGATGGTCAAGGGCTTCTGTTC-TTACAGGCCCAACCAGT----------CGACATTGCTAGTAGCCAGGAGAAAGATCCCAT--TGTCATTGGTCCTGCAGTGGGTAAAAACAGGAGAACGACTAACTAAATCTACCACATGGA
droTak1 scf7180000415096:13277-13527 + CCTCCAGCAATACAACATGGATATCCAGCACCGCAGTGGCAAGCTGCACGGTAACGCCGACGCCCTGTCTCGCCGCCCCTGTGGCGAATGCCGCATATGCACTAACGCAGAACAAAACGATGGTCAAGGGATTTTGTTC-TTACAGGCCCAACCCGT----------CGACGTTGCTATCAGCCAGGAAAAAGATCCCACTTTGTCGTTGGTCTTGCAGTGGCTAAAAACAGGAGAACGACCACCGAAACCCACAACATGGA
droEug1 scf7180000409847:33189-33292 + GTTACAGCAGTTCCAATATGACGTGATCTAGCGATGCGGAGTCCAGAACCTGGTCGCGGACACGCTGTCGCGCCAGCCTCT-GGCG-----------------------------------------------------------------------ACATTACAACAGG--------------------------------------------------------------------------------------CACAAG
dm3 chr2L:22402720-22402795 + GCTGCAACAGTACGATTTCGAAACCTCGTACAGAAAGGGCCAGCTGAAC---ATCGTTCACGCACTTTCAAGACAACCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 2r:1085451-1085580 + ATTCCAGCAGTACGACGCGGACATCCAGCACCGCAC--------------------------CCCTTTCTCGCCACCCTTTCGGTAAATGTTGCATACGTACCGAAGCGGAACAAATTGACTGTCAGAAGGTCATGTTC-TTAAAAGTCCTATTGCC---------------------------------------------------------------------------------------------------------
droSec2 scaffold_120:12245-12263 + ATTCCAGCAGTACGACGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 v2_chrUn_008:248974-249084 - ACTCCAGCCATACCAGTTCGAGGTGCAATATCGGAAAGGGAAACTAAATGTAGTAGCAGACACACTGTCTAGAGCCCCACC-GGCG-----------------------------------------------------------------------GAACTAA-------------------------------------------------------------------------------AGGCGATCAGAAACACGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TCTGCAACAGTACGACGTGCAGATTCAGCACCGAAGTGGTACACAACATGGTAACGCTGACAGCCTCTCTTGCCAACCTTGTAGCGACTGTCCCACATGCGAAAGAGTCGAACGGAAAAATGGAGTGGCTGTGTTGTTT-ACCCACGTCCTGTTACC----------CGACCTGCGCAAGGAGTAAGAGGCGGACCAGGCCCTCGGTAAGGTGCGCGATTGGATGAACAAGTCCGAACGACCGCCTAAACCAACATTGTGGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................TGGATGAACAAGTCCGAACGACCGCC.................26151.0716016000
...........................................................................................................................................................................................................................TGGATGAACAAGTCCGAACGACCG...................24150.8713013000
............................................AACATGGTAACGCTGACAGCCT....................................................................................................................................................................................................22200.8517310130
...........................................CAACATGGTAACGCTGACAGCCT....................................................................................................................................................................................................23200.601238010
...........................................CAACATGGTAACGCTGACAGCC.....................................................................................................................................................................................................22200.551128010
............................................AACATGGTAACGCTGACAGCCTC...................................................................................................................................................................................................23200.40808000
...........................................................................................................................................................................................................................TGGATGAACAAGTCCGAACGACC....................23170.35606000
.....................................................................................................AAAGAGTCGAACGGAAAAATGGAG.........................................................................................................................................24170.29503110
............................................AACATGGTAACGCTGACAGCCTCTC.................................................................................................................................................................................................25190.26504010
............................................AACATGGTAACGCTGACAGCCTCT..................................................................................................................................................................................................24200.25514000
............................................AACATGGTAACGCTGACAGCCTCTCT................................................................................................................................................................................................26190.21404000
...........................................CAACATGGTAACGCTGACAGCCTC...................................................................................................................................................................................................24200.20403010
...................................GTGGTACACAACATGGTAACGCTG...........................................................................................................................................................................................................24200.15303000
.............................................................................................CACATGCGAAAGAGTCGAACGGA..................................................................................................................................................23200.15301110
...........................................................................................................................................................................................................................TGGATGAACAAGTCCGAACGACCGC..................25150.13201100
..........................................................................................................GTCGAACGGAAAAATGGAGTGG......................................................................................................................................22170.12202000
...........................................................................................................TCGAACGGAAAAATGGAGTGG......................................................................................................................................21170.12202000
...................................................................................................................................................TCCTGTTACC----------CGACCTGCGCA....................................................................................2190.11100010
...................................................................................................................................................TCCTGTTACC----------CGACCTGCGC.....................................................................................2090.11101000
...................................................................................................................................................TCCTGTTACC----------CGACCTGCGCAAGGAG...............................................................................2690.11101000
.....................................................................................................................................................................................................................CGCGATTGGATGAACAAGTCCGAACG.......................26180.11202000
...........................................CAACATGGTAACGCTGACAGCCTCTC.................................................................................................................................................................................................26190.11202000
...........................................CAACATGGTAACGCTGACAGCCTCT..................................................................................................................................................................................................25200.10202000
.............................................................................................CACATGCGAAAGAGTCGAACGG...................................................................................................................................................22200.10200020
.............................................ACATGGTAACGCTGACAGCCT....................................................................................................................................................................................................21200.10202000
.............................................................................................................................................................................................GCGGACCAGGCCCTCGGTAAGGTGCGC..............................................27110.09101000
................................................................................................................................................................................................GACCAGGCCCTCGGTAAGGTGCGC..............................................24120.08100010
............................................................................................................................................................................................GGCGGACCAGGCCCTCGGTAAGGTG.................................................25120.08101000
...........................................................................................................................................................................................AGGCGGACCAGGCCCTCGGTAAG....................................................23130.08101000
..............................................................................................................................................................................................CGGACCAGGCCCTCGGTAAGGT..................................................22130.08101000
...........................................................................................................................................................................................AGGCGGACCAGGCCCTCGGTA......................................................21140.07101000
...........................................................................................................................................................................................AGGCGGACCAGGCCCTCGGTAA.....................................................22140.07101000
...............................................................................TGTAGCGACTGTCCCACATGCGAAAGAG...........................................................................................................................................................28150.07101000
........................................................................................................................................................................................................................GATTGGATGAACAAGTCCGAACGACCGC..................28150.07101000
...........................................................................................................................................................................................................................TGGATGAACAAGTCCGAACGACCGCCT................27150.07101000
........................................................................................................................................................................................................................GATTGGATGAACAAGTCCGAACGACCG...................27150.07101000
...............................................................................................................................................................................................................................TGAACAAGTCCGAACGACCGCCT................23150.07101000
...........................................................................................................................................................................................................................TGGATGAACAAGTCCGAACGACCGCCTA...............28150.07101000
...............................................................................TGTAGCGACTGTCCCACATGCGAAAG.............................................................................................................................................................26150.07101000
................................................................................................................................................................................................................AGGTGCGCGATTGGATGAACAAG...............................23160.06100010
..................................................................................AGCGACTGTCCCACATGCGAAAG.............................................................................................................................................................23160.06101000
..............................................................................................................................................................................................................TAAGGTGCGCGATTGGATGAACAAG...............................25160.06100010
...............................................................................................................................................................................................................AAGGTGCGCGATTGGATGAACAAGT..............................25160.06100010
..................................................................................AGCGACTGTCCCACATGCGAAAGA............................................................................................................................................................24160.06101000
.....................................................................................................AAAGAGTCGAACGGAAAAATGGAGTG.......................................................................................................................................26170.06100010
............................................................................................................CGAACGGAAAAATGGAGTG.......................................................................................................................................19170.06101000
......................................................................................................AAGAGTCGAACGGAAAAATGGAG.........................................................................................................................................23170.06101000
..............................................................................................................AACGGAAAAATGGAGTGG......................................................................................................................................18170.06100010
...........................................................................................................................................................................................................CGGTAAGGTGCGCGATTGGATGAACA.................................26170.06101000
.............................................................................................................................................................................................................GTAAGGTGCGCGATTGGATGAACA.................................24170.06101000
...........................................................................................................................................................................................................CGGTAAGGTGCGCGATTGGATGA....................................23180.06101000
...................................................................................................................................................................................................................TGCGCGATTGGATGAACAAGTCCGAA.........................26180.06101000
......................................................................................................................................................................................................GCCCTCGGTAAGGTGCGCGATTGG........................................24180.06101000
.....................................................................................................................................................................................................................CGCGATTGGATGAACAAGTCCGAA.........................24180.06100010
.............................................................................CTTGTAGCGACTGTCCCACATGCGA................................................................................................................................................................25180.06101000
...........................................................................................................................................................................................................................TGGATGAACAAGTCCGAACGAC.....................22190.05101000
.............................................................................CTTGTAGCGACTGTCCCACATGC..................................................................................................................................................................23190.05101000
.......................................................................................................................................................................................................CCCTCGGTAAGGTGCGCGATTGG........................................23190.05101000
........................................................................................................................................................................................................................GATTGGATGAACAAGTCCGAACG.......................23190.05101000
.................................................................................................TGCGAAAGAGTCGAACGGAAAAATGG...........................................................................................................................................26190.05101000
.............................................................................CTTGTAGCGACTGTCCCACATG...................................................................................................................................................................22190.05101000
................................................TGGTAACGCTGACAGCCTCTCT................................................................................................................................................................................................22190.05100010
............................................AACATGGTAACGCTGACAGCCG....................................................................................................................................................................................................22200.05110000
......................................GTACACAACATGGTAACGCTGA..........................................................................................................................................................................................................22200.05101000
......................................GTACACAACATGGTAACGCTGACAGCC.....................................................................................................................................................................................................27200.05101000
......................................GTACACAACATGGTAACGCTG...........................................................................................................................................................................................................21200.05100010
.............................................................................................CACATGCGAAAGAGTCGAACGGAAAAA..............................................................................................................................................27200.05101000
...............................................ATGGTAACGCTGACAGCCTC...................................................................................................................................................................................................20200.05101000
...........................................CAACATGGTAACGCTGACAGC......................................................................................................................................................................................................21200.05101000
..............................................................................................ACATGCGAAAGAGTCGAACGGAA.................................................................................................................................................23200.05101000
................................................................................................ATGCGAAAGAGTCGAACGGAAAA...............................................................................................................................................23200.05101000
...........................................................................................CCCACATGCGAAAGAGTCGAACGG...................................................................................................................................................24200.05101000
........................................ACACAACATGGTAACGCTGACAG.......................................................................................................................................................................................................23200.05101000
droMoj3
AC---AGCAATTCCAGTTCGACGTCCGTTATCGCCGGGGAAGCCTGAACGTGGCGGCCGATGCATTGTCTCGCCAACCCTTGGAGAGCTGCC--------------------------------------------------------------AGC----------AAGCATCGCCAGAGAGCC-----------------------------------------------------GGAGAAGTTTAGAGACTACGTGGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
AC---AGCAATTCCAGTTCGACGTCC............................................................................................................................................................................................................................................23212.00249000141
AC---AGCAATTCCAGTTCGACGTCCG...........................................................................................................................................................................................................................................2426.50131100011
AC---AGCAATTCCAGTTCGACGTC.............................................................................................................................................................................................................................................2225.0010200071
AC---AGCAATTCCAGTTCGACGTCCGT..........................................................................................................................................................................................................................................2524.509700020
AC---AGCAATTCCAGTTCGACGTCCGTTA........................................................................................................................................................................................................................................2724.008800000
.............................................................GCATTGTCTCGCCAACCCTTGG...................................................................................................................................................................................2273.43242010030
..............................TCGCCGGGGAAGCCTGAACGTGGCGGC.............................................................................................................................................................................................................2713.003200010
............................TATCGCCGGGGAAGCCTGAACGTGGC................................................................................................................................................................................................................2612.002200000
..............................TCGCCGGGGAAGCCTGAACGTGGC................................................................................................................................................................................................................2412.002000020
...............................................................................................................................................................................................................................................GAGAAGTTTAGAGACTACGTGGT2312.002100010
AC---AGCAATTCCAGTTCGACGTCCGTT.........................................................................................................................................................................................................................................2621.503200010
.....AGCAATTCCAGTTCGACGTCCGTT.........................................................................................................................................................................................................................................2421.503200010
.............................................................GCATTGTCTCGCCAACCCTTGGA..................................................................................................................................................................................2371.299800010
..............................TCGCCGGGGAAGCCTGAACGTGG.................................................................................................................................................................................................................2311.001000001
.............................................................................CCTTGGAGAGCTGCC--------------------------------------------------------------AGC----------AAGC...........................................................................................2211.001100000
...............................................................................TTGGAGAGCTGCC--------------------------------------------------------------AGC----------AAGCATCGCC.....................................................................................2611.001000010
......................................GAAGCCTGAACGTGGCGGCCGATC........................................................................................................................................................................................................2411.001100000
............................................................................................................................................................C----------AAGCATCGCCAGAGAGCC-----------------------------------------------------GG......................2111.001000001
...........................................................................................................................................................................ATCGCCAGAGAGCC-----------------------------------------------------GGAGAAG.................2111.001000010
...........................TTATCGCCGGGGAAGCCTGAACGTGGC................................................................................................................................................................................................................2711.001100000
..............................TCGCCGGGGAAGCCTGAACGTGGCGGA.............................................................................................................................................................................................................2711.001100000
............................TATCGCCGGGGAAGCCTGAACGTGGCG...............................................................................................................................................................................................................2711.001100000
...................................................................TCTCGCCAACCCTTGGAGAGCTGCC--------------------------------------------------------------AGC----------...............................................................................................2811.001100000
...........................TTATCGCCGGGGAAGCCTGAA......................................................................................................................................................................................................................2111.001100000
..............................................................................CTTGGAGAGCTGCC--------------------------------------------------------------AGC----------AAGC...........................................................................................2111.001000010
..............................TCGCCGGGGAAGCCTGAACGTGGCG...............................................................................................................................................................................................................2511.001100000
..............................TCGCCGGGGAAGCCTGAACGTGGCGG..............................................................................................................................................................................................................2611.001100000
...................................................................................................................................................................................AGAGCC-----------------------------------------------------GGAGAAGTTTAGAG..........2011.001000010
AC---AGCAATTCCAGTTCGACGTCCGTC.........................................................................................................................................................................................................................................2621.002200000
.............................................................GCATTGTCTCGCCAACCCTTGGAGAGC..............................................................................................................................................................................2770.866600000
.............................................................GCATTGTCTCGCCAACCCTTGGAGAG...............................................................................................................................................................................2670.715500000
.............................................................GCATTGTCTCGCCAACCCTTGGAG.................................................................................................................................................................................2470.574200020
.C---AGCAATTCCAGTTCGACGTCCGT..........................................................................................................................................................................................................................................2420.501100000
.....AGCAATTCCAGTTCGACGTCCGTTA........................................................................................................................................................................................................................................2520.501100000
.C---AGCAATTCCAGTTCGACGTCCG...........................................................................................................................................................................................................................................2320.501100000
.....AGCAATTCCAGTTCGACGTCCGT..........................................................................................................................................................................................................................................2320.501000010
.C---AGCAATTCCAGTTCGACGTC.............................................................................................................................................................................................................................................2120.501100000
......GCAATTCCAGTTCGACGTCCGTTA........................................................................................................................................................................................................................................2420.501100000
.....AGCAATTCCAGTTCGACGTCCGTTT........................................................................................................................................................................................................................................2520.501100000
.....AGCAATTCCAGTTCGACGTCCGTTATC......................................................................................................................................................................................................................................2720.501100000
..............................................................CATTGTCTCGCCAACCCTTGG...................................................................................................................................................................................2170.292200000
.......CAATTCCAGTTCGACGTCCGT..........................................................................................................................................................................................................................................2150.201000001
............CCAGTTCGACGTCCGTTATCGCCGG.................................................................................................................................................................................................................................2560.171100000
..............AGTTCGACGTCCGTTATCGCCGGGG...............................................................................................................................................................................................................................2560.171100000
..............................................................CATTGTCTCGCCAACCCTTG....................................................................................................................................................................................2070.141100000
.............................................................GCATTGTCTCGCCAACCCTTG....................................................................................................................................................................................2170.141100000
.........................................................CGATGCATTGTCTCGCCAACC........................................................................................................................................................................................2170.141000010
..........................................................GATGCATTGTCTCGCCAACCC.......................................................................................................................................................................................2170.141000010
.............................................................GCATTGTCTCGCCAACCCTTGGAGA................................................................................................................................................................................2570.141100000
..............................................................CATTGTCTCGCCAACCCTTGGAGAGC..............................................................................................................................................................................2670.141100000
..............................................................CATTGTCTCGCCAACCCTTGGAG.................................................................................................................................................................................2370.141100000
.............................................................GCATTGTCTCGCCAACCCTTGGAA.................................................................................................................................................................................2470.141000010
...................GACGTCCGTTATCGCCGGGG...............................................................................................................................................................................................................................2080.131100000
AC---AGCAATTCCAGTTCGAC................................................................................................................................................................................................................................................1980.131100000
.......................TCCGTTATCGCCGGGGAAGCC..........................................................................................................................................................................................................................2190.111100000
dp5
ACTGTAGCAGTACAATATGGAGATTCAAAACCGCTCTGGAAC------------------------------TGGACTCTGCAACGATTGTTGCGTTTGCAAAAAAGCGGAAGAAAAGGCTGG-------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AC---AGCAATACCAATACGACGTGCAGTATCGGGCCGGCAACCAGAACGTAGTCGCTGACGCGCTGTCAAGACAACCATT-GGAG-----------------------------------------------------------------------ACCCTCTC-------------------------------------------------------------------------------------------CCGCATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................CCAGAACGTAGTCGCTGACGCGCTT...................................................................................................................................................................................................25200.102200000
....................................CGGCAACCAGAACGTAGTCGCTGACGCG......................................................................................................................................................................................................28200.102020000
............................................................CGCGCTGTCAAGACAACCATT-GG..................................................................................................................................................................................23200.102020000
..........................................CCAGAACGTAGTCGCTGACGCGCT....................................................................................................................................................................................................24200.051010000
.................................GGCCGGCAACCAGAACGTAGTCG..............................................................................................................................................................................................................23200.051010000
.........................................ACCAGAACGTAGTCGCTGACGCG......................................................................................................................................................................................................23200.051000100
.........................................................................CAACCATT-GGAG-----------------------------------------------------------------------ACCCTCTC-------------------------------------------------------------------------------------------CCGCAT26200.051010000
droBip1
GTTGCAGCAGTATGACTACGTCATCAGCTACAGGAAGGGTAAGCTGAACGTGGCCGCCGACGCGCTATCTGGCCAGCC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ACTCCAACAGTACAACATGGATATCCAGCACCGCAGTGGGAAGCAACATGTAAACGCCGACGCTTTGTCTCGTCGTCCTTGTGGCAAGTGCCGCGTATGCAC---AGCAGAACAAAACGACGGCCTCGAGATCATGTTT-CCACAGACCCAACCCTT----------AGACCTAGCTAGCAGCCAGAACAAGGACCCAAGTCTCGCATTGATCCGGCAGTGGCTGGAAAAAGGAGAGCGACCAAGTAAATCGACTACATGGASizeHit CountTotal NormTotal
No Reads
droFic1
TCTACAGCAGTACCATATGGACATTCAACACCGAAGTGGTAAACATCATGGAAACGCTGACGCTCTTTCACGCCGACCCTGTGGTGAATGCAGGGTGTGCGAAAAAGCTGAGCAGTCCGAAAGACCAGGAGTCCTCTTT-ATGCAAATCGAAGCTGT----------CGATTATGCCCAACTTCAACGACAGGACCCAACTTTAGCCGTGGTCCTATCATGGTTGGAAAATGGAAAACGACTCGTCAAATCCCAGATTTGGGSizeHit CountTotal NormTotal
No Reads
droEle1
CCTCCAATAGTATGACATGGACATCCCACATCGTAG-------CAGAATGGGAGTTCAGGCGCCTTGTCTCGCCGACCATGTGGATACTGCCGCAAATGCAACAGAGCGGAACAATGCGATTCCCAAGGAGACATGTTTTTTTCAAGTACAACCCTC----------CGACTTGTCCAGCATCCAGGAAAATGATACCACTTTGGCGCTCATGTTACCTCGGAACCAAAAAGGACAAAGGCCACCAAAATCCACGAGATGGGSizeHit CountTotal NormTotal
No Reads
droRho1
CCTCCAGCAATACGACATGGATATCCAGCACCGCAGTGGCAAGCTGCACGGTAACGCCGACGCCCTGTCTCGCCGCCCCTGTGGTGAATGCCGCATATGCACTAAGGCAGAACAAAAAGATGATCAAGGGATTTTGTTC-TTACAGGCCCAACCAGT----------CGACATTGCTATCAGCCAGGAAAAAGATCCCACTTTGTCGTTGATCCTGCAGTGGTTAAAAACAGGAGAACGACCAACTAAATCCACAACATGGASizeHit CountTotal NormTotal
No Reads
droBia1
CATCCAGCACT---------------------GCAGTGGCAAGCTGCACGGTAACGCCAACGCTCTGTCTCTCAGCCCATGTAGTGAATGCCACATTTGCACTATCGCAGAACAAAACGATGGTCAAGGGCTTCTGTTC-TTACAGGCCCAACCAGT----------CGACATTGCTAGTAGCCAGGAGAAAGATCCCAT--TGTCATTGGTCCTGCAGTGGGTAAAAACAGGAGAACGACTAACTAAATCTACCACATGGASizeHit CountTotal NormTotal
No Reads
droTak1
CCTCCAGCAATACAACATGGATATCCAGCACCGCAGTGGCAAGCTGCACGGTAACGCCGACGCCCTGTCTCGCCGCCCCTGTGGCGAATGCCGCATATGCACTAACGCAGAACAAAACGATGGTCAAGGGATTTTGTTC-TTACAGGCCCAACCCGT----------CGACGTTGCTATCAGCCAGGAAAAAGATCCCACTTTGTCGTTGGTCTTGCAGTGGCTAAAAACAGGAGAACGACCACCGAAACCCACAACATGGASizeHit CountTotal NormTotal
No Reads
droEug1
GTTACAGCAGTTCCAATATGACGTGATCTAGCGATGCGGAGTCCAGAACCTGGTCGCGGACACGCTGTCGCGCCAGCCTCT-GGCG-----------------------------------------------------------------------ACATTACAACAGG--------------------------------------------------------------------------------------CACAAGSizeHit CountTotal NormTotal
No Reads
dm3
GCTGCAACAGTACGATTTCGAAACCTCGTACAGAAAGGGCCAGCTGAAC---ATCGTTCACGCACTTTCAAGACAACCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............CGATTTCGAAACCTCGTACAGAAAGGGC..............................................................................................................................................................................................................................28185.008500000000000000000000000100000000000000002100111030004000000000000000000000000000000000000000000000000000000000000000000000000000000000200000001003000208000000000000000000000000000000000000001000011000000011000000000101040404230000000000000000000000000000000000000000000000000000000000000000002306000000002000000000000000252000000
............CGATTTCGAAACCTCGTACAGAAAGG................................................................................................................................................................................................................................26163.00630000000000000000000000000000000000000000010000001000200000000000000000000000000000000000000000000000000000000000000000000000000000000000008300000001200000000000000000000000000000000000000000100004000000043000000000000030704410000000000000000000000000000000000000000000000000000000000000000003621000000020000000000000000000000000
............CGATTTCGAAACCTCGTACAGAAAGGG...............................................................................................................................................................................................................................27144.00440000000000000000000000000000000000000000000000100000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000101200230000000000000000000000000000000000000200001000000001000000000100090213110000000000000000000000000000000000000000000000000000000000000000001211000000010000000000000000220000000
..................................AAGGGCCAGCTGAAC---ATCGTT............................................................................................................................................................................................................21236.507300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000018119151900000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............CGATTTCGAAACCTCGTACAGAAAG.................................................................................................................................................................................................................................25126.00260000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000070202160000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000
..................................AAGGGCCAGCTGAAC---ATCGT.............................................................................................................................................................................................................20615.6794000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000151611242800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................AGGGCCAGCTGAAC---ATCGTT............................................................................................................................................................................................................20215.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013561500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GATTTCGAAACCTCGTACAGAAAGGGC..............................................................................................................................................................................................................................27112.00120000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000601000000000000000000000000
............CGATTTCGAAACCTCGTACAGAAA..................................................................................................................................................................................................................................24111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000202130000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................AGGGCCAGCTGAAC---ATCGT.............................................................................................................................................................................................................19610.17610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001315771900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TGAAC---ATCGTTCACGCACTTTCAAGACA...........................................................................................................................................................................................2817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010300120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TACAGAAAGGGCCAGCTGAAC---ATCGT.............................................................................................................................................................................................................2666.83410000000000000000000000000000000000003010000010100000200000000000000000000000000000000000000000000000000000000000000000000000000000000101010000200120000000000000000000000000000000000000000000000000000000002010003000001100000100000000000000000000000000000000000000000000000000000000000000000001101000000300000000000000000433000000
............................TACAGAAAGGGCCAGCTGAAC---ATCG..............................................................................................................................................................................................................2566.674000000000000000000000001000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010000000000000010001000000000000000000000000000000000000000000000000001010100130000000010101200000000000000000000000000000000000000000000000000000000000001000000004000000300000000000000002112000000
.....AACAGTACGATTTCGAAACCT............................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000
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droSim2
ATTCCAGCAGTACGACGCGGACATCCAGCACCGCAC--------------------------CCCTTTCTCGCCACCCTTTCGGTAAATGTTGCATACGTACCGAAGCGGAACAAATTGACTGTCAGAAGGTCATGTTC-TTAAAAGTCCTATTGCC---------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................AAATGTTGCATACGTACCGAAGCGGAA......................................................................................................................................................2712.00200000000002000000
...............CGCGGACATCCAGCACCGCAC--------------------------........................................................................................................................................................................................................2111.00100000000001000000
.......................................................................................ATGTTGCATACGTACCGAAGCGGAAC.....................................................................................................................................................2611.00100000000001000000
.............................................................................................................................AGAAGGTCATGTTC-TTAAAAGTCCTAT.............................................................................................................2711.00100000000001000000
...................................................................................................TACCGAAGCGGAACAAATTGA..............................................................................................................................................2111.00100000000001000000
...........................................................................................TGCATACGTACCGAAGCGGAACAAAT.................................................................................................................................................2611.00100010000000000000
....................................................................................................................TTGACTGTCAGAAGGTCATGTTC-TTAAAAG...................................................................................................................3011.00100000001000000000
................................................................................................ACGTACCGAAGCGGAACAAATTGAC.............................................................................................................................................2511.00100000000001000000
....................................................................................................................TTGACTGTCAGAAGGTCATGTTC-TT........................................................................................................................2520.50100000000001000000
droSec2
ATTCCAGCAGTACGACGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ACTCCAGCCATACCAGTTCGAGGTGCAATATCGGAAAGGGAAACTAAATGTAGTAGCAGACACACTGTCTAGAGCCCCACC-GGCG-----------------------------------------------------------------------GAACTAA-------------------------------------------------------------------------------AGGCGATCAGAAACACGGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................TGTAGTAGCAGACACACTGTCTAGA.............................................................................................................................................................................................2520.50101000000000
................................................TGTAGTAGCAGACACACTGTCTA...............................................................................................................................................................................................2320.50101000000000
................................................TGTAGTAGCAGACACACTGTCTAGT.............................................................................................................................................................................................2520.50100000010000

Generated: 05/18/2015 at 02:55 AM