ID:

dwi_1875

 Coordinate:

scf2_1100000004620:18588-18676 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.5

Flybase annnotation

exon [dwil_GLEANR_9033:2]; CDS [Dwil\GK24884-cds]; exon [dwil_GLEANR_9033:1]; CDS [Dwil\GK24884-cds]; intron [Dwil\GK24884-in]

Repeatable elements

NameClassFamilyStrand
Gypsy-12_DWil-I-intLTRGypsy-
mature
  1. scf2_1100000001366:5911-5932 -
  2. scf2_1100000002851:373-394 -
  3. scf2_1100000005484:162-183 -
  4. scf2_1100000009006:1226-1247 -
  5. dwi_1875  scf2_1100000004620:18616-18637 -
  6. scf2_1100000004620:164779-164800 -
  7. scf2_1100000012252:7-28 -
  8. scf2_1100000004754:32426-32447 -
  9. scf2_1100000004888:552632-552653 -
  10. scf2_1100000004941:320647-320668 -
  11. scf2_1100000004909:687660-687681 -
  12. scf2_1100000004936:505240-505261 -
  13. scf2_1100000004936:524124-524145 -
  14. scf2_1100000004954:1148843-1148864 -
  15. scf2_1100000004956:294419-294440 -
  16. scf2_1100000004959:60644-60665 -
  17. scf2_1100000004961:2720126-2720147 -
  18. scf2_1100000004967:664961-664982 -
  19. scf2_1100000004968:3182165-3182186 -
  20. scf2_1100000007241:283-304 -
star
  1. scf2_1100000001366:5939-5963 -
  2. scf2_1100000002851:401-425 -
  3. scf2_1100000005484:190-214 -
  4. scf2_1100000013431:10-34 -
  5. scf2_1100000008420:290-314 -
  6. scf2_1100000006027:386-410 -
  7. scf2_1100000006131:572-596 -
  8. dwi_1875  scf2_1100000004620:18644-18668 -
  9. scf2_1100000004620:164807-164831 -
  10. scf2_1100000004754:32454-32478 -
  11. scf2_1100000004854:56016-56040 -
  12. scf2_1100000004887:510001-510025 -
  13. scf2_1100000004941:320675-320699 -
  14. scf2_1100000004936:505268-505292 -
  15. scf2_1100000004936:524152-524176 -
  16. scf2_1100000004954:1148871-1148895 -
  17. scf2_1100000004959:60672-60696 -
  18. scf2_1100000004961:2720154-2720178 -
  19. scf2_1100000004967:664989-665013 -
  20. scf2_1100000000275:3425-3449 -

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------##################################################
AACAACAACTGCCGTGGCGCCTGGAAACAAATCGTCAGGCACCGTCACGAGTGAGACTAGATGCTTCAACTGCTCAGGATGGGGGCATTACAAGAGTCAATGCCCGAAACCAATGAGACCTCCGAATTCATGTTTCAAGTGTGGCATAGTGGGCCACAGCTACAAAAACTGCCCGTCTCGAACTGCCCG
**********************************************************..................((.....(((((.((....))..))))).....))****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V119
head
 V117
male body		 M020
head
..................................................................................................................................................................CAAAAACTGCCCGTCTCGAACT..... 22 0 1 1.00 1 0 1 0 0 0
.........................................................................................ACAAGAGTCAATGCCCGAAACC.............................................................................. 22 0 20 0.25 5 5 0 0 0 0
..........................................................AGATGCTTCAACTGCTCAGGATGGG.......................................................................................................... 25 0 20 0.20 4 4 0 0 0 0
...................CCTGGAAACAAATCGTCAGGCA.................................................................................................................................................... 22 0 20 0.20 4 4 0 0 0 0
...........................CAAATCGTCAGGCACCGTCACG............................................................................................................................................ 22 0 20 0.15 3 3 0 0 0 0
.....................TGGAAACAAATCGTCAGGCACCGT................................................................................................................................................ 24 0 20 0.15 3 3 0 0 0 0
..........................................................AGATGCTTCAACTGCTCAGGATGG........................................................................................................... 24 0 20 0.15 3 3 0 0 0 0
..............................................................GCTTCAACTGCTCAGGATGGGGG........................................................................................................ 23 0 20 0.15 3 3 0 0 0 0
...........................CAAATCGTCAGGCACCGTCACGAGTG........................................................................................................................................ 26 0 20 0.15 3 2 1 0 0 0
..................................................................CAACTGCTCAGGATGGGGGCATT.................................................................................................... 23 0 20 0.10 2 2 0 0 0 0
......AACTGCCGTGGCGCCTGGAAA.................................................................................................................................................................. 21 0 20 0.10 2 0 0 2 0 0
....................................................................................................................................TTTCAAGTGTGGCATAGTGG..................................... 20 0 20 0.10 2 2 0 0 0 0
.....................TGGAAACAAATCGTCAGGCACCG................................................................................................................................................. 23 0 20 0.10 2 2 0 0 0 0
................................................................................................................................CATGTTTCAAGTGTGGCATAGTGGG.................................... 25 0 20 0.10 2 2 0 0 0 0
.........................................................................................ACAAGAGTCAATGCCCGAAACCAATG.......................................................................... 26 0 20 0.10 2 2 0 0 0 0
.............................................................TGCTTCAACTGCTCAGGATGGGGG........................................................................................................ 24 0 20 0.10 2 2 0 0 0 0
..........................................................................................................................CGAATTCATGTTTCAAGTGTGGCA........................................... 24 0 20 0.10 2 2 0 0 0 0
......AACTGCCGTGGCGCCTGG..................................................................................................................................................................... 18 0 20 0.10 2 2 0 0 0 0
.................................................................TCAACTGCTCAGGATGGGGGC....................................................................................................... 21 0 20 0.10 2 0 2 0 0 0
......................................................................................................CCCGAAACCAATGAGACCTCCGAA............................................................... 24 0 20 0.10 2 2 0 0 0 0
AACAACAACTGCCGTGGCGCCTGG..................................................................................................................................................................... 24 0 20 0.10 2 2 0 0 0 0
......................................................................................ATTACAAGAGTCAATGCCCGA.................................................................................. 21 0 20 0.05 1 0 0 0 1 0
..................................................................CAACTGCTCAGGATGGGGGCA...................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
......................................................................TGCTCAGGATGGGGGCATTACAAGAG............................................................................................. 26 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................CAAGTGTGGCATAGTGGG.................................... 18 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................GCCACAGCTACAAAAACTGCCCG.............. 23 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................TTTCAAGTGTGGCATAGTGGG.................................... 21 0 20 0.05 1 0 0 1 0 0
...........................................................GATGCTTCAACTGCTCAGGATGGGGG........................................................................................................ 26 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................AAGTGTGGCATAGTGGGCCAA................................ 21 1 20 0.05 1 0 1 0 0 0
.........................AACAAATCGTCAGGCACCGG................................................................................................................................................ 20 1 20 0.05 1 0 0 0 0 1
.............GTGGCGCCTGGAAACAAATCG........................................................................................................................................................... 21 0 20 0.05 1 0 0 0 1 0
........................................................................................................................................AAGTGTGGCATAGTGGGCCACAGC............................. 24 0 20 0.05 1 1 0 0 0 0
AACAACAACTGCCGTGGCGC......................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0
..........................ACAAATCGTCAGGCACCGTCACGAG.......................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
...........................CAAATCGTCAGGCACCGTCACGAGTGA....................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
...........................CAAATCGTCAGGCACCGTCAC............................................................................................................................................. 21 0 20 0.05 1 1 0 0 0 0
................................................................TTCAACTGCTCAGGATGGGGGC....................................................................................................... 22 0 20 0.05 1 0 0 1 0 0
........................AAACAAATCGTGAGGCACCGTCACGA........................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0
..............................................................................................................................TTCATGTTTCAAGTGTGGCATAGTGGGC................................... 28 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................TGTTTCAAGTGTGGCATAGTGG..................................... 22 0 20 0.05 1 0 0 1 0 0
................................................................TTCAACTGCTCAGGATGGGGG........................................................................................................ 21 0 20 0.05 1 1 0 0 0 0
...................................................................AACTGCTCAGGATGGGGGCA...................................................................................................... 20 0 20 0.05 1 0 0 0 1 0
............................................................................................................................AATTCATGCTTCAAGTGTGGC............................................ 21 1 20 0.05 1 0 1 0 0 0
...........................CAACTCGTCAGGCACCGTCACG............................................................................................................................................ 22 1 20 0.05 1 0 0 0 0 1
.....................................................................................CATTACAAGAGTCAATGCCCGA.................................................................................. 22 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................TCATGTTTCAAGTGTGGCATAGTGG..................................... 25 0 20 0.05 1 0 1 0 0 0
.....CAACTGCCGTGGCGCCTGGAAACAAA.............................................................................................................................................................. 26 0 20 0.05 1 0 1 0 0 0
..............................................................................................................................................................GCTACAAAAACTGCCCGTCTCGAA....... 24 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................CCGAATTCATGTTTCAAGTGTGG............................................. 23 0 20 0.05 1 1 0 0 0 0
......................................................................TGCTGCGGATGGGGGCAGTA................................................................................................... 20 3 20 0.05 1 0 1 0 0 0
................................................................................................................................CATGTTTCAAGTGTGGCA........................................... 18 0 20 0.05 1 1 0 0 0 0
...AACAACTGCCGTGGCTCCTGGA.................................................................................................................................................................... 22 1 20 0.05 1 0 1 0 0 0
........................................................................................................................................................GCCACAGCTACAAAAACTGC................. 20 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................ATGTTTCAAGTGTGGCATAGTGGGC................................... 25 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................TGTTTCAAGTGTGGCATAGTG...................................... 21 0 20 0.05 1 0 1 0 0 0
...............................................................................TGGGGGCATTACAAGAGTC........................................................................................... 19 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................CAAGTGTGGCATAGTGGGCC.................................. 20 0 20 0.05 1 0 0 0 1 0
..........................................................................................CAAGAGTCAATCCCCGAAACCAATG.......................................................................... 25 1 20 0.05 1 1 0 0 0 0
..........................ACAAATCGTCAGGCACCGTCACGAGTGA....................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0
..........................ACAAATCGTCAGGCACCGTC............................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0
........................................................................................TACAAGAGTCAATGCCCGAAACCAATG.......................................................................... 27 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................TGGGCCACAGCTACAAAAACTG.................. 22 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TTGTTGTTGACGGCACCGCGGACCTTTGTTTAGCAGTCCGTGGCAGTGCTCACTCTGATCTACGAAGTTGACGAGTCCTACCCCCGTAATGTTCTCAGTTACGGGCTTTGGTTACTCTGGAGGCTTAAGTACAAAGTTCACACCGTATCACCCGGTGTCGATGTTTTTGACGGGCAGAGCTTGACGGGC
******************************************************************************..................((.....(((((.((....))..))))).....))********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
 V117
male body		 V119
head
..........................................................................GTCCTACCCCCGTAATGTTCTCAGT.......................................................................................... 25 0 20 13.95 279 279 0 0 0 0
........................................................................GAGTCCTACCCCCGTAATGTTCTCAGT.......................................................................................... 27 0 20 7.30 146 146 0 0 0 0
............................................................................................................................................................GTCGATGTTTTTGACGGGCAGAGCTT....... 26 0 20 5.30 106 104 2 0 0 0
.........................................GGCAGTGCTCACTCTGATCTACGAAGT......................................................................................................................... 27 0 1 3.00 3 3 0 0 0 0
................................................................................................................TACTCTGGAGGCTTAAGTACAAAGTT................................................... 26 0 20 2.80 56 54 2 0 0 0
.......................................................................................AATGTTCTCAGTTACGGGCTTTGGT............................................................................. 25 0 20 2.75 55 48 7 0 0 0
............................................................................CCTACCCCCGTAATGTTCTCAGT.......................................................................................... 23 0 20 2.30 46 46 0 0 0 0
...........................................CAGTGCTCACTCTGAACT................................................................................................................................ 18 1 1 2.00 2 0 0 2 0 0
...............................................GCTCACTCTGATCTACGAAGTTGAC..................................................................................................................... 25 0 2 2.00 4 4 0 0 0 0
............GCACCGCGGACCTTTGTTTAGCAGT........................................................................................................................................................ 25 0 20 1.75 35 33 2 0 0 0
............................................................................................................................................................GTCGATGTTTTTGACGGGCAGAGCT........ 25 0 20 1.70 34 34 0 0 0 0
.............................TTAGCAGTCCGTGGCAGTGCTCACTCT..................................................................................................................................... 27 0 20 1.65 33 33 0 0 0 0
...........................................CAGTGCTCACTCTGAACTTG.............................................................................................................................. 20 3 8 1.50 12 5 0 7 0 0
.................................................................................................................ACTCTGGAGGCTTAAGTACAAAGT.................................................... 24 0 20 1.30 26 24 2 0 0 0
.........................................................................................................................................TCACACCGTATCACCCGGTGTCGAT........................... 25 0 20 1.30 26 25 1 0 0 0
..........CGGCACCGCGGACCTTTGTTTAGCAGT........................................................................................................................................................ 27 0 20 1.30 26 26 0 0 0 0
.......TGACGGCACCGCGGACCTTTGTTT.............................................................................................................................................................. 24 0 20 1.25 25 19 6 0 0 0
.......................................................................CGAGTCCTACCCCCGTAATGTTCTCAGT.......................................................................................... 28 0 20 1.20 24 24 0 0 0 0
..GTTGTTGACGGCACCGCGGACCTTTGT................................................................................................................................................................ 27 0 20 1.20 24 24 0 0 0 0
...........................................................CTACGAAGTTGACGAGTCCTACCCCCGT...................................................................................................... 28 0 20 1.10 22 21 1 0 0 0
.............................................................................................................GGTTACTCTGGAGGCTTAAGTACAA....................................................... 25 0 20 1.05 21 21 0 0 0 0
....TGTTGACGGCACCGCGGACCTTTGTT............................................................................................................................................................... 26 0 20 1.05 21 21 0 0 0 0
.......................................................................................................................................................................TGACGGGCAGAGCTTGACGGG. 21 0 1 1.00 1 0 1 0 0 0
...........................................CAGTGCTCACTCTGAACTG............................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0
...................................GTCCGTGGCAGTGCTCACTCTGAT.................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0
............................................................................................................................................................GTCGATGTTTTTGACGGGCAGAGCTTG...... 27 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................ACCGTATCACCCGGTGTCGATGTT........................ 24 0 20 1.00 20 13 7 0 0 0
..........................................GCAGTGCTCACTCTGATCTACGAAGT......................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................GTTTTTGACGGGCAGAGCTTGACGG.. 25 0 1 1.00 1 1 0 0 0 0
............................................................................CCTACCCCCGTAATGTTCTCAGTT......................................................................................... 24 0 20 1.00 20 20 0 0 0 0
...........................................................................................................TTGGTTACTCTGGAGGCTTAAGT........................................................... 23 0 20 0.95 19 19 0 0 0 0
.........................................................................................................................................TCACACCGTATCACCCGGTGTCGATGT......................... 27 0 20 0.95 19 19 0 0 0 0
.............................................................................................................GGTTACTCTGGAGGCTTAAGTACAAAGT.................................................... 28 0 20 0.95 19 19 0 0 0 0
...............................................................................................................TTACTCTGGAGGCTTAAGTACAAAGT.................................................... 26 0 20 0.90 18 18 0 0 0 0
.............................................................................................................................................ACCGTATCACCCGGTGTCGATGTTT....................... 25 0 20 0.90 18 0 18 0 0 0
.........ACGGCACCGCGGACCTTTGTTTAGC........................................................................................................................................................... 25 0 20 0.90 18 18 0 0 0 0
.............................TTAGCAGTCCGTGGCAGTGCTCAC........................................................................................................................................ 24 0 20 0.75 15 14 1 0 0 0
.TGTTGTTGACGGCACCGCGGACCTTTGT................................................................................................................................................................ 28 0 20 0.75 15 15 0 0 0 0
.....................................................................GACGAGTCCTACCCCCGTAATGTTCT.............................................................................................. 26 0 20 0.75 15 15 0 0 0 0
.............................................................................................................................................................TCGATGTTTTTGACGGGCAGAGCTT....... 25 0 20 0.70 14 14 0 0 0 0
..............................................................................................................GTTACTCTGGAGGCTTAAGTACAAAGT.................................................... 27 0 20 0.65 13 13 0 0 0 0
.......TGACGGCACCGCGGACCTTTGT................................................................................................................................................................ 22 0 20 0.65 13 9 4 0 0 0
.............................................................................................................................TAAGTACAAAGTTCACACCGTATCAC...................................... 26 0 20 0.65 13 13 0 0 0 0
...............................AGCAGTCCGTGGCAGTGCTCACTCT..................................................................................................................................... 25 0 20 0.65 13 13 0 0 0 0
.........................TTGTTTAGCAGTCCGTGGCAGTGCT........................................................................................................................................... 25 0 20 0.60 12 12 0 0 0 0
............................................AGTGCTCACTCTGAACTT............................................................................................................................... 18 2 10 0.60 6 6 0 0 0 0
................................................................................................................TACTCTGGAGGCTTAAGTACAAAG..................................................... 24 0 20 0.60 12 12 0 0 0 0
..........................................................................................GTTCTCAGTTACGGGCTTTGGTTA........................................................................... 24 0 20 0.55 11 11 0 0 0 0
.......TGACGGCACCGCGGACCTTTGTTTAGC........................................................................................................................................................... 27 0 20 0.55 11 11 0 0 0 0
.............................................................................................................................................ACCGTATCACCCGGTGTCGATGTTTT...................... 26 0 20 0.55 11 9 2 0 0 0
.................................................TCACTCTGATCTACGAAGTTGAC..................................................................................................................... 23 0 2 0.50 1 1 0 0 0 0
............................................................................CCTACCCCCGTAATGTTCTCAGTTA........................................................................................ 25 0 20 0.50 10 10 0 0 0 0
...................................................ACTCTGATCTACGAAGTTGAC..................................................................................................................... 21 0 2 0.50 1 0 1 0 0 0
..........................................................................................................TCTGGTTACTCTGGAGGCTTAAGT........................................................... 24 1 20 0.50 10 10 0 0 0 0
..............................TAGCAGTCCGTGGCAGTGCTCACTCT..................................................................................................................................... 26 0 20 0.50 10 10 0 0 0 0
..................................................................GTTGACGAGTCCTACCCCCGTAATGT................................................................................................. 26 0 20 0.50 10 10 0 0 0 0
...TTGTTGACGGCACCGCGGACCTTTGT................................................................................................................................................................ 26 0 20 0.45 9 9 0 0 0 0
............................................................................CCTACCCCCGTAATGTTCTCAGTTAC....................................................................................... 26 0 20 0.45 9 9 0 0 0 0
........................................................................................................GCTTTGGTTACTCTGGAGGCTTAAGT........................................................... 26 0 20 0.40 8 8 0 0 0 0
.........................................................................................................................................TCACACCGTATCACCCGGTGTCGATGTTT....................... 29 0 20 0.40 8 8 0 0 0 0
.TGTTGTTGACGGCACCGCGGACCT.................................................................................................................................................................... 24 0 20 0.40 8 0 8 0 0 0
.........................................................................AGTCCTACCCCCGTAATGTTCTCAG........................................................................................... 25 0 20 0.40 8 8 0 0 0 0
..............................................................................................................................................CCGTATCACCCGGTGTCGATGTTT....................... 24 0 20 0.40 8 8 0 0 0 0
.....................ACCTTTGTTTAGCAGTCCGTGGCAGT.............................................................................................................................................. 26 0 20 0.35 7 7 0 0 0 0
...........................GTTTAGCAGTCCGTGGCAGTGCTCAC........................................................................................................................................ 26 0 20 0.35 7 7 0 0 0 0
.....GTTGACGGCACCGCGGACCTTTGTTT.............................................................................................................................................................. 26 0 20 0.35 7 7 0 0 0 0
...........................................................................................................................................................TGTCGATGTTTTTGACGGGCA............. 21 0 20 0.35 7 0 6 0 0 1
...........................................................................................................................................................TGTCGATGTTTTTGACGGGCAGAGCT........ 26 0 20 0.30 6 0 6 0 0 0
........................................................................................ATGTTCTCAGTTACGGGCTTTGGT............................................................................. 24 0 20 0.30 6 5 1 0 0 0
.......TGACGGCACCGCGGACCTTTGTT............................................................................................................................................................... 23 0 20 0.30 6 6 0 0 0 0
.............................................................ACGAAGTTGACGAGTCCTACCCCCGT...................................................................................................... 26 0 20 0.30 6 6 0 0 0 0
...............................AGCAGTCCGTGGCAGTGCTCACT....................................................................................................................................... 23 0 20 0.30 6 6 0 0 0 0
................................................................................................................................................GTATCACCCGGTGTCGATGTTTT...................... 23 0 20 0.30 6 5 1 0 0 0
...............................................................................................................................................CGTATCACCCGGTGTCGATGTTTTT..................... 25 0 20 0.30 6 6 0 0 0 0
.....................................................................GACGAGTCCTACCCCCGTAATGTTCTCAG........................................................................................... 29 0 20 0.25 5 5 0 0 0 0
......................................................................................AAATGTTCTCAGTTACGGGCTTTGGT............................................................................. 26 1 20 0.25 5 4 1 0 0 0
...........................................................................................................TTGGTTACTCTGGAGGCTTAAGTAC......................................................... 25 0 20 0.25 5 5 0 0 0 0
.............................................................................CTACCCCCGTAATGTTCTCAGT.......................................................................................... 22 0 20 0.25 5 5 0 0 0 0
.......................................................................................AATGTTCTCAGTTACGGGCTTTGG.............................................................................. 24 0 20 0.25 5 5 0 0 0 0
...................................................................................................TACGGGCTTTGGTTACTCTGGAGGCT................................................................ 26 0 20 0.25 5 5 0 0 0 0
..................................................................................CCCGTAATGTTCTCAGTTACGGGCTT................................................................................. 26 0 20 0.25 5 5 0 0 0 0
................................GCAGTCCGTGGCAGTGCTCACT....................................................................................................................................... 22 0 20 0.25 5 5 0 0 0 0
.....................................................................GACGAGTCCTACCCCCGTAATGT................................................................................................. 23 0 20 0.25 5 5 0 0 0 0
.............................................................................................................GGTTACTCTGGAGGCTTAAGTACA........................................................ 24 0 20 0.25 5 5 0 0 0 0
..........CGGCACCGCGGACCTTTGTTTAGC........................................................................................................................................................... 24 0 20 0.25 5 5 0 0 0 0
..................................................................................................................................................ATCACCCGGTGTCGATGTTTTTGA................... 24 0 20 0.25 5 5 0 0 0 0
....................GACCTTTGTTTAGCAGTCCGTGGCAGT.............................................................................................................................................. 27 0 20 0.25 5 5 0 0 0 0
.............................................................................................................GGTTACTCTGGAGGCTTAAGTACAAAG..................................................... 27 0 20 0.20 4 4 0 0 0 0
.................................................................AGTTGACGAGTCCTACCCCCGTAATGT................................................................................................. 27 0 20 0.20 4 4 0 0 0 0
...........................................................................................................................................ACACCGTATCACCCGGTGTCGATGT......................... 25 0 20 0.20 4 4 0 0 0 0
......................................................................................TAATGTTCTCAGTTACGGGCTTTGGT............................................................................. 26 0 20 0.20 4 3 1 0 0 0
TTGTTGTTGACGGCACCGCGGACCT.................................................................................................................................................................... 25 0 20 0.20 4 4 0 0 0 0
...........................................................................TCCTACCCCCGTAATGTTCTCAG........................................................................................... 23 0 20 0.20 4 4 0 0 0 0
........................................................................................................................AGGCTTAAGTACAAAGTTCACACCGTAT......................................... 28 0 20 0.20 4 4 0 0 0 0
......................................................................................................................GGAGGCTTAAGTACAAAGTTCACACCG............................................ 27 0 20 0.20 4 2 1 0 1 0
...................................................................................CCGTAATGTTCTCAGTTACGGGCTT................................................................................. 25 0 20 0.20 4 4 0 0 0 0
..................................................................................................................................................ATCACCCGGTGTCGATGTTT....................... 20 0 20 0.20 4 4 0 0 0 0
.................................................................AGTTGACGAGTCCTACCCCCGTAAT................................................................................................... 25 0 20 0.20 4 4 0 0 0 0
.........................................................................................................................................TCACACCGTATCACCCGGTGTCGA............................ 24 0 20 0.20 4 4 0 0 0 0
...............................................................................................................................................CGTATCACCCGGTGTCGATGTTTTTG.................... 26 0 20 0.20 4 4 0 0 0 0
............................................................................................................................................................GTCGATGTTTTTGACGGGCAG............ 21 0 20 0.20 4 0 4 0 0 0
............................................................................................................................................CACCGTATCACCCGGTGTCGATGTTT....................... 26 0 20 0.15 3 3 0 0 0 0
.................................................................GTTTGACGAGTCCTACCCCCGTAATGT................................................................................................. 27 2 20 0.15 3 3 0 0 0 0
................................................................................................................................................GTATCACCCGGTGTCGATGTTTTT..................... 24 0 20 0.15 3 3 0 0 0 0
.........................................................................................................................................TCACACCGTATCACCCGGTGTCGATG.......................... 26 0 20 0.15 3 3 0 0 0 0
.............CACCGCGGACCTTTGTTTAGCAGT........................................................................................................................................................ 24 0 20 0.15 3 3 0 0 0 0
.......TGACGGCACCGCGGACCTTTGTTTA............................................................................................................................................................. 25 0 20 0.15 3 3 0 0 0 0
...........................................................................................................CTGGTTACTCTGGAGGCTTAAGTACAA....................................................... 27 1 20 0.15 3 3 0 0 0 0
..........................TGTTTAGCAGTCCGTGGCAGTGCT........................................................................................................................................... 24 0 20 0.15 3 3 0 0 0 0
................................................................................................................................................GTATCACCCGGTGTCGATGTTTTTGA................... 26 0 20 0.15 3 3 0 0 0 0
..............ACCGCGGACCTTTGTTTAGCAGT........................................................................................................................................................ 23 0 20 0.15 3 3 0 0 0 0
...........................................................................................................TTGGTTACTCTGGAGGCTTAAGTACAAA...................................................... 28 0 20 0.15 3 3 0 0 0 0
...............................................................................................................................................CGTATCACCCGGTGTCGATGTTTTTGA................... 27 0 20 0.15 3 3 0 0 0 0
........GACGGCACCGCGGACCTTTGTTTAG............................................................................................................................................................ 25 0 20 0.15 3 3 0 0 0 0
.....................................................................................................CGGGCTTTGGTTACTCTGGAGGCTT............................................................... 25 0 20 0.15 3 3 0 0 0 0
..............................................................................................................GTTACTCTGGAGGCTTAAGTACAA....................................................... 24 0 20 0.15 3 3 0 0 0 0
......................................................................................................................GGAGGCTTAAGTACAAAGT.................................................... 19 0 20 0.15 3 3 0 0 0 0
.......................................................................................................GGCTTTGGTTACTCTGGAGGCTTAAG............................................................ 26 0 20 0.15 3 3 0 0 0 0
............................................................................................................................................CACCGTATCACCCGGTGTCGATGT......................... 24 0 20 0.15 3 3 0 0 0 0
....TGTTGACGGCACCGCGGACCT.................................................................................................................................................................... 21 0 20 0.15 3 3 0 0 0 0
..............................................................................................................................................CCGTATCACCCGGTGTCGATGTT........................ 23 0 20 0.15 3 3 0 0 0 0
............................................................................CCTACCCCCGTAATGTTCTCAG........................................................................................... 22 0 20 0.15 3 3 0 0 0 0
..............................TAGCAGTCCGTGGCAGTGCTCAC........................................................................................................................................ 23 0 20 0.15 3 3 0 0 0 0
..................................................................GTTGACGAGTCCTACCCCCGT...................................................................................................... 21 0 20 0.15 3 3 0 0 0 0
............................................................................................................TGGTTACTCTGGAGGCTTAAGT........................................................... 22 0 20 0.10 2 2 0 0 0 0
............GCACCGCGGACCTTTGTTTAGCAGTC....................................................................................................................................................... 26 0 20 0.10 2 2 0 0 0 0
TTGTTGTTGACGGCACCGCGGACCTT................................................................................................................................................................... 26 0 20 0.10 2 2 0 0 0 0
..........CGGCACCGCGGACCTTTGTTTAG............................................................................................................................................................ 23 0 20 0.10 2 2 0 0 0 0
...............................................................................................................................................CGTATCACCCGGTGTCGATGTTT....................... 23 0 20 0.10 2 2 0 0 0 0
...........................................................................................TTCTCAGTTACGGGCTTTGGTTAC.......................................................................... 24 0 20 0.10 2 2 0 0 0 0
..................................................................................CCCGTAATGTTCTCAGTTACGGGCT.................................................................................. 25 0 20 0.10 2 2 0 0 0 0
...................GGACCTTTGTTTAGCAGTCCGTGGCAGT.............................................................................................................................................. 28 0 20 0.10 2 2 0 0 0 0
...............................................................................................................................................................GATGTTTTTGACGGGCAGAGCTT....... 23 0 20 0.10 2 2 0 0 0 0
...........................................................................................................................................ATACCGTATCACCCGGTGTCGATGTTT....................... 27 1 20 0.10 2 1 1 0 0 0
.................GCGGACCTTTGTTTAGCAGT........................................................................................................................................................ 20 0 20 0.10 2 0 2 0 0 0
........................................................................CGGTCCTACCCCCGTAATGTTCTCAG........................................................................................... 26 2 20 0.10 2 2 0 0 0 0
....................................................................................CGTAATGTTCTCAGTTACGGGCTTT................................................................................ 25 0 20 0.10 2 2 0 0 0 0
.......................CTTTGTTTAGCAGTCCGTGGCAGT.............................................................................................................................................. 24 0 20 0.10 2 2 0 0 0 0
.......................................................................CGAGTCCTACCCCCGTAATGT................................................................................................. 21 0 20 0.10 2 2 0 0 0 0
..................................................................GTTGACGAGTCCTACCCCCGTAATGTG................................................................................................ 27 1 20 0.10 2 2 0 0 0 0
...................................................................................................................TCTGGAGGCTTAAGTACAAAGTTCACAC.............................................. 28 0 20 0.10 2 2 0 0 0 0
....TGTTGACGGCACCGCGGACCTTTT................................................................................................................................................................. 24 1 20 0.10 2 2 0 0 0 0
.........................................................................AGTCCTACCCTCGTAATGTTCTCAG........................................................................................... 25 1 20 0.10 2 2 0 0 0 0
.....................................................................................ATAATGTTCTCAGTTACGGGCTTTGGT............................................................................. 27 1 20 0.10 2 0 2 0 0 0
........................................................................................ATGTTCTCAGTTACGGGCTTTGGTT............................................................................ 25 0 20 0.10 2 2 0 0 0 0
..................................................................................................................................................ATCACCCGGTGTCGATGTTTT...................... 21 0 20 0.10 2 1 1 0 0 0
...............CCGCGGACCTTTGTTTAGCA.......................................................................................................................................................... 20 0 20 0.10 2 0 2 0 0 0
........................................................................................................................................ATCACACCGTATCACCCGGTGTCGATGT......................... 28 1 20 0.10 2 2 0 0 0 0
........................................................................TAGTCCTACCCCCGTAATGTTCTCAGT.......................................................................................... 27 1 20 0.10 2 2 0 0 0 0
.................................CAGTCCGTGGCAGTGCTCACTCT..................................................................................................................................... 23 0 20 0.10 2 2 0 0 0 0
...............................AGCAGTCCGTGGCAGTGCTCACTC...................................................................................................................................... 24 0 20 0.10 2 2 0 0 0 0
.........................................................................AGTCCTACCCCCGTAATGTTCTCA............................................................................................ 24 0 20 0.10 2 2 0 0 0 0
................................................................................................................................................GTATCACCCGGTGTCGATGTTTTTG.................... 25 0 20 0.10 2 2 0 0 0 0
..........................TGTTTAGCAGTCCGTGGCAGTGCTCA......................................................................................................................................... 26 0 20 0.10 2 2 0 0 0 0
..............................................................................................TCAGTTACGGGCTTTGGTTACTCTG...................................................................... 25 0 20 0.10 2 2 0 0 0 0
..............................................................................................................................AAGTACAAAGTTCACACCGTATCAC...................................... 25 0 20 0.10 2 2 0 0 0 0
..........................................................................................................................................CACACCGTATCACCCGGTGTCGATGT......................... 26 0 20 0.10 2 2 0 0 0 0
................................................................................................................TACTCTGGAGGCTTAAGTACAAAGT.................................................... 25 0 20 0.10 2 0 2 0 0 0
...........................................................................................................CTGGTTACTCTGGAGGCTTAAGTAC......................................................... 25 1 20 0.10 2 2 0 0 0 0
...............CCGCGGACCTTTGTTTAGCAGT........................................................................................................................................................ 22 0 20 0.10 2 1 1 0 0 0
............................................AGTGCTCACTCTGAGCTTG.............................................................................................................................. 19 3 13 0.08 1 1 0 0 0 0
..........................................ACAGTGCTCACTCTGAACTT............................................................................................................................... 20 3 18 0.06 1 1 0 0 0 0
................................................................................................................TACTCTGGAGGCTTACGTACAAAGT.................................................... 25 1 20 0.05 1 0 0 0 1 0
..............................................................................................................................................................CGATGTTTTTGACGGGCAGAGC......... 22 0 20 0.05 1 1 0 0 0 0
.............................................................................CTACCCCCGTAATGTTCTC............................................................................................. 19 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................................TTCACCCGGTGTCGATGTTTTT..................... 22 1 20 0.05 1 0 0 0 0 1
...................................................................................................................................................TCACCCGGTGTCGATGTTTTTGACGGGC.............. 28 0 20 0.05 1 1 0 0 0 0
....TGCTGACGGCACCGCGGACCT.................................................................................................................................................................... 21 1 20 0.05 1 0 1 0 0 0
................................................................TGATTGACGAGTCCTACCCCCGTAATGT................................................................................................. 28 3 20 0.05 1 1 0 0 0 0
..........CGGCACCGCGGACCTTTGTTTAGCAGTG....................................................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0
............................................................................................................................................................TTCGATGTTTTTGACGGGCAGAGCTT....... 26 1 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................TGTCGATGTTTTTGACGGGCAGAGC......... 25 0 20 0.05 1 1 0 0 0 0
......................................................................................GAATGTTCTCAGTTACGGGCTTTGGT............................................................................. 26 1 20 0.05 1 1 0 0 0 0
....................................................................TGACGAGTCCTACCCCCGTAATGTTCTCA............................................................................................ 29 0 20 0.05 1 1 0 0 0 0
............................................................................................................................................................GTCGATGTTTTTGAAGGGCAG............ 21 1 20 0.05 1 0 1 0 0 0
....................................................................TGACGAGTCCTACCCCCGTAATGT................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
....TGTTGACGGCACGGCGGACCTTTGT................................................................................................................................................................ 25 1 20 0.05 1 1 0 0 0 0
........GACGGCACCGCGGACCTTTG................................................................................................................................................................. 20 0 20 0.05 1 1 0 0 0 0
..................................................................................................TTACGGGCTTTGGTTACTCTGGAGGCT................................................................ 27 0 20 0.05 1 1 0 0 0 0
........................................................................AAGTCCTACCCCCGTAATGTTCTCAGT.......................................................................................... 27 1 20 0.05 1 1 0 0 0 0
............................................................................................................................................................GTCGATGTTTTTGACGGGCAGAGCCT....... 26 1 20 0.05 1 1 0 0 0 0
...............................................................................................................ATACTCTGGAGGCTTAAGTACAAAGTT................................................... 27 1 20 0.05 1 1 0 0 0 0
.TGTTGCTGACGGCACCGCGGACCTT................................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0
.........................................................................AGTCCTACCCCCGTAATGTTCTCAGTAA........................................................................................ 28 1 20 0.05 1 1 0 0 0 0
....TGTTGACGGCACCGCGGAC...................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0
..........................................................................................................TCTGGTTACTCTGGAGGCTTAAGTA.......................................................... 25 1 20 0.05 1 1 0 0 0 0
...........................GTTTAGCAGTCCGTGGCAGTGCTC.......................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................ACCGTATCACCCGGTGTCGA............................ 20 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................TGTTTTTGACGGGCAGAGC......... 19 0 20 0.05 1 0 0 0 1 0
...............................................................................................................................AGTACAAAGTTCACACCGTATCA....................................... 23 0 20 0.05 1 1 0 0 0 0
....TGTTGACGGCACCGCGGACCTTTCT................................................................................................................................................................ 25 1 20 0.05 1 1 0 0 0 0
....TGTTGACGCCACCGCGGACCTTTGTT............................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0
.........................................................................................................CTTTGGTTACTCTGGAGGCTTAAGTA.......................................................... 26 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................CCGTATCAAGCTGTGTCGATGTT........................ 23 3 20 0.05 1 0 0 1 0 0
..TATGTTGACGGCACCGCGGACCTTTGTT............................................................................................................................................................... 28 2 20 0.05 1 1 0 0 0 0
.......................................................................................................GGCTTTGGTTACTCTGGAGGCTTAAGT........................................................... 27 0 20 0.05 1 0 1 0 0 0
..............................................................................................................................................CCGTATCACCCGGTGTCGAT........................... 20 0 20 0.05 1 1 0 0 0 0
....................................................................TGACGAGTCCTACCCCCGTAATGTTC............................................................................................... 26 0 20 0.05 1 1 0 0 0 0
............................................................................................................................................CACCGTATCACCCGGTGTCGATGTT........................ 25 0 20 0.05 1 1 0 0 0 0
.....GTCGACGGCACCGCGGACCTTTGT................................................................................................................................................................ 24 1 20 0.05 1 1 0 0 0 0
..........................................................................................................TTTGGTTACTCTGGAGGCTTAAGTACAA....................................................... 28 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................TCACACCGTATCACCAGGTGTCGATGT......................... 27 1 20 0.05 1 1 0 0 0 0
.............................................................................CCACCCCCGTAATGTTCTCAGT.......................................................................................... 22 1 20 0.05 1 1 0 0 0 0
...........................................................................................................................................ACACCGTATCACCCGGTGTCGATGTTTT...................... 28 0 20 0.05 1 0 1 0 0 0
...............................................................................................................................................CGTATCACCCGGTGTCGATGTTTTTTA................... 27 1 20 0.05 1 1 0 0 0 0
.TGTTGTTGACGGCACCGCGGACCTT................................................................................................................................................................... 25 0 20 0.05 1 0 0 0 1 0
ATGTTGTTGACGGCACCGCGGACCTT................................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0
..........................................................................................................................................................AAATCGATGTTTTTGACGGGCAGAGCTT....... 28 3 20 0.05 1 1 0 0 0 0
...........................................................................................................................................ACACCGTATCACCCGGTGTCGATGTTT....................... 27 0 20 0.05 1 0 1 0 0 0
...........................................................................TCCTACCCCCGTAAGGTTCTCAGTTA........................................................................................ 26 1 20 0.05 1 1 0 0 0 0
........................................................................GAGTCCTACCCCCGTAATGTTCTCA............................................................................................ 25 0 20 0.05 1 1 0 0 0 0
.................................................................................................................ACTCTGGAGGCTTAAGTACAA....................................................... 21 0 20 0.05 1 0 0 0 1 0
...............................AGCAGTCCGTGGCAGTGCTCA......................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0
........GACGGCACCGCGGACCTTTGTTT.............................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
............................TTTAGCAGTCCGTGGCAGTGCTCACT....................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0
...........................................................................................................TTGGTTACTCTGGAGGCTTAAGTA.......................................................... 24 0 20 0.05 1 1 0 0 0 0
................................................................................CCCCCGTAATGTTCTCAGTTACGGGCT.................................................................................. 27 0 20 0.05 1 1 0 0 0 0
...........................GTTTAGCAGTCCGTGGCAGTGCTCA......................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
..............................TAGCAGTCCGTGGCAGTGCTCACTC...................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
........................................................................................ATGTTCTCAGTTACGGGCTTTGG.............................................................................. 23 0 20 0.05 1 1 0 0 0 0
.........................................................................................TGTTCTCAGTTACGGGCTTTGGTTA........................................................................... 25 0 20 0.05 1 1 0 0 0 0
.....GTTGACGGCACCGAGGACCTTTGTT............................................................................................................................................................... 25 1 20 0.05 1 1 0 0 0 0
...........................GTTTAGCAGTCCGTGGCAGTGCT........................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
....................................................................................CGTAATGTTCTCAGTTAC....................................................................................... 18 0 20 0.05 1 0 1 0 0 0
...................................................................................................................TCTGGAGGCTTAAGTACAAAGTTCAC................................................ 26 0 20 0.05 1 1 0 0 0 0
..........................................................TCTACGAAGTTGACGAGTCCT.............................................................................................................. 21 0 20 0.05 1 0 1 0 0 0
...........GGCACCGCGGACCTTTGT................................................................................................................................................................ 18 0 20 0.05 1 0 1 0 0 0
.........................................................................................TGTTCTCAGTTACGGGCTTTGGTTAC.......................................................................... 26 0 20 0.05 1 1 0 0 0 0
.......................................................................................................GGCTTTGGTTACTCTGGAGGCTTAAGTA.......................................................... 28 0 20 0.05 1 1 0 0 0 0
..............ACCGCGGACCTTTGTTTAGCAGTCCGT.................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................CACACCGTATCACCCTGTGTCGATGT......................... 26 1 20 0.05 1 1 0 0 0 0
...............................................................................ACCCCCGTAATGTTCTCAGTTACGGGCT.................................................................................. 28 0 20 0.05 1 1 0 0 0 0
............................................................................................................TGGTTACTCTGGAGGCTTAAGTACAA....................................................... 26 0 20 0.05 1 0 1 0 0 0
........................................................................................................................................................TGGTGTCGATGTTTTTGACGGGCAGA........... 26 1 20 0.05 1 0 1 0 0 0
............................................................................................................................................................GTCGATGTTTTTTACGGGCAGAGCTT....... 26 1 20 0.05 1 1 0 0 0 0
.....................................................................................................................TGGAGGCTTAAGTACAAAGTTCACA............................................... 25 0 20 0.05 1 1 0 0 0 0
.............................TTAGCTGTCCGTGGCAGTGCTCACTCT..................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0
...TTGTTGACGGCACCGCGGACCTTTGTT............................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
.TGTTGTTGACGGCACCGCGGACCTTTG................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................................ATCACCCGGTGTGGATGTTTTTGA................... 24 1 20 0.05 1 1 0 0 0 0
.........ACGGCACCGCGGACCTTTGTTT.............................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0
......TTGACGGCACCGCGGACCTTT.................................................................................................................................................................. 21 0 20 0.05 1 0 1 0 0 0
.........ACGGCACCGCGGACCTTTGTTTAGCAGT........................................................................................................................................................ 28 0 20 0.05 1 0 1 0 0 0
............................................................................................TCTCAGTTACGGGCTTTGGTT............................................................................ 21 0 20 0.05 1 0 0 0 1 0
..........................................................................................................................GCTTAAGTACAAAGTTCACACCGTATCA....................................... 28 0 20 0.05 1 1 0 0 0 0
..........................................................................GTCCTACCCCCGTAATGTTCTCA............................................................................................ 23 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................AAACACCGTATCACCCGGTGTCGATGTTT....................... 29 2 20 0.05 1 0 1 0 0 0
.........ACGGCACCGCGGACCTTTGTTTA............................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
..........................................................................GTCCTACCCTCGTAATGTTCTCAGT.......................................................................................... 25 1 20 0.05 1 1 0 0 0 0
........................................................................GAGTCCTACCCCCGTAATGTTCT.............................................................................................. 23 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................ACCGTATCACCCGGTGTCGATGTTTTT..................... 27 0 20 0.05 1 1 0 0 0 0
..............................................................CGAAGTTGACGAGTCCTACCCCCGTA..................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
................................................................................................AGTTACGGGCTTTGGTTACTCT....................................................................... 22 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................GGCTTAAGTACAAAGTTCACACCGTAT......................................... 27 0 20 0.05 1 1 0 0 0 0
.....................................................................................................CGGGCTTTGGTTACTCTGGAGGCTTAA............................................................. 27 0 20 0.05 1 0 0 0 1 0
..........TGGCACCGCGGACCTTTGTTTAGCAGT........................................................................................................................................................ 27 1 20 0.05 1 1 0 0 0 0
.....................................................................GACGAGTCCTACACCCGTAATGTT................................................................................................ 24 1 20 0.05 1 1 0 0 0 0
...........................................................................................................................................TCACCGTATCACCCGGTGTCGATGTTT....................... 27 1 20 0.05 1 1 0 0 0 0
...................................................................................................................................CAAAGTTCACACCGTATCACCCGGTGT............................... 27 0 20 0.05 1 1 0 0 0 0
...........................................................................TCCTACCCCCGTAATGTTCTC............................................................................................. 21 0 20 0.05 1 1 0 0 0 0
...................TTACCTTTGTTTAGCAGTCCGTGGCAGT.............................................................................................................................................. 28 2 20 0.05 1 1 0 0 0 0
.............................................................................................................................................ACCGTATCACCCGGTGTCGATGT......................... 23 0 20 0.05 1 0 1 0 0 0
...............CCGCGGACCTTTGTTTAGCAG......................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0
..TATGTTGACGGCACCACGGACCTTTGT................................................................................................................................................................ 27 3 20 0.05 1 1 0 0 0 0
.GTTTGTTGACGGCACCGCGGACCTTTGT................................................................................................................................................................ 28 2 20 0.05 1 1 0 0 0 0
..........................................................................................GTTCTCAGTTACGGGCTTTGCTTA........................................................................... 24 1 20 0.05 1 1 0 0 0 0
...................................................................................CCGTAATGTTCTCAGTTACGGGCT.................................................................................. 24 0 20 0.05 1 1 0 0 0 0
...............................................................GAAGTTGACGAGTCCTACCCCCGT...................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
.................................................................AGTTGACGAGTCCTACCCCCGTAATGTT................................................................................................ 28 0 20 0.05 1 1 0 0 0 0
.....GTTGACGGCACCGCGGACCT.................................................................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
........................................................................................................................AGGCTTAAGTACAAAGTT................................................... 18 0 20 0.05 1 1 0 0 0 0
.........................................................................................................CTTTGGTTACTCTGGAGGCTTAA............................................................. 23 0 20 0.05 1 1 0 0 0 0
..........................................................................GTCCTACCCCCCTAATGTTCTCAGT.......................................................................................... 25 1 20 0.05 1 1 0 0 0 0
.............................................................................................CTCAGTTACGGGCTTTGGTTACTC........................................................................ 24 0 20 0.05 1 1 0 0 0 0
........................................................................................GGGTTCTCAGTTACGGGCTT................................................................................. 20 2 20 0.05 1 1 0 0 0 0
......................................................................................TAATGTTCTCAGTTACGGGCTTTGGTT............................................................................ 27 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................CCGTATCACCCGGTGTCGATGT......................... 22 0 20 0.05 1 1 0 0 0 0
.............................................................................................................GGTTACTCTGGAGGCTTAAGTAC......................................................... 23 0 20 0.05 1 1 0 0 0 0
..........................................................................................GTTCTCAGTTACGGGCTTTGGTTAC.......................................................................... 25 0 20 0.05 1 0 1 0 0 0
............................................................................................................................................................GTCGATGTTTTTGACGGGCAGTGCTT....... 26 1 20 0.05 1 1 0 0 0 0
........................................................................................................ACTCTGGTTACTCTGGAGGCTTAAG............................................................ 25 2 20 0.05 1 1 0 0 0 0
................................................................................................................TACTCTGGAGGCTTAAGTACAAAGTTC.................................................. 27 0 20 0.05 1 1 0 0 0 0
......................................................................................................GGGCTTTGGTTACTCTGGAGGC................................................................. 22 0 20 0.05 1 1 0 0 0 0
......................................................................................TAATGTTCTCAGTTACGGGCTTTGG.............................................................................. 25 0 20 0.05 1 1 0 0 0 0
....TGTTGACGGCACCGCGGACCTTTGTG............................................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0
...ATGTTGACGGCACCGCGGACCTTTGTTT.............................................................................................................................................................. 28 1 20 0.05 1 1 0 0 0 0
..........................................................................................................................................TACACCGTATCACCCGGTGTCGATGT......................... 26 1 20 0.05 1 1 0 0 0 0
.....................................................................................................................TGGAGGCTTAAGTACAAAGTT................................................... 21 0 20 0.05 1 0 1 0 0 0
.....................................................................................GTAATGTTCTCAGTTACGGGCTTTGGT............................................................................. 27 0 20 0.05 1 1 0 0 0 0
....................................................................TGACGAGTCCTACCCCCGT...................................................................................................... 19 0 20 0.05 1 1 0 0 0 0
............................................................................CCTACCCCCGTAATGTTCTCAGCTAC....................................................................................... 26 1 20 0.05 1 1 0 0 0 0
..........................................................................GTCCTACCCCCGTAATGTC................................................................................................ 19 1 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................GGTGTCGATGTTTTTGACGGGCA............. 23 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................TCACACCGTATCACCCGGTGTCGATCT......................... 27 1 20 0.05 1 1 0 0 0 0
............................................................................................................................................TACCGTATCACCCGGTGTCGATGTTT....................... 26 1 20 0.05 1 1 0 0 0 0
.......................................................................................................................GAGGCTTAAGTACAAAGTTCACACCGTAT......................................... 29 0 20 0.05 1 1 0 0 0 0
..........................TGTTTAGCAGTCCGTGGCAGTGCTCACT....................................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................TGTCGATGTTTTTGACGGGCAGAGCA........ 26 1 20 0.05 1 0 1 0 0 0
.................................................................AGTTGACGAGTCCTACCCCCGTAATG.................................................................................................. 26 0 20 0.05 1 1 0 0 0 0
...TTTTTGACGGCACCGCGGACCTTTGTTT.............................................................................................................................................................. 28 1 20 0.05 1 1 0 0 0 0
................CGCGGACCTTTGTTTAGCAG......................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004620:18538-18726 - dwi_1875 AACAACAACTGCCGTGGCGCCTGGAAACAAATCGTCAGGCACCGTCACGAGTGAGACTAGATGCTTCAACTGCTCAGGATGGGGGCATTACAAGAGTCAATGCCCGAAACCAATGAGACCTCCGAATTCATGTTTCAAGTGTGGCATAGTGGGCCACAGCTACAAAAACTGCCCGTCTCGAACTGCCCG
droKik1 scf7180000300814:4124-4231 - A-------------------------------------------------GCGAGACTCGTTGCTTCAATTGCAACGCGAAGGGGCACTGGAAGAGGGAGTGCACTAAGCCAAAGAGGTCGCCAGGTTCGTGCTACGGATGCGGCGCAGAGGATCAC--------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AACAACAACTGCCGTGGCGCCTGGAAACAAATCGTCAGGCACCGTCACGAGTGAGACTAGATGCTTCAACTGCTCAGGATGGGGGCATTACAAGAGTCAATGCCCGAAACCAATGAGACCTCCGAATTCATGTTTCAAGTGTGGCATAGTGGGCCACAGCTACAAAAACTGCCCGTCTCGAACTGCCCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................CAAAAACTGCCCGTCTCGAACT.....2211.00100010
.........................................................................................ACAAGAGTCAATGCCCGAAACC..............................................................................22200.25505000
..........................................................AGATGCTTCAACTGCTCAGGATGGG..........................................................................................................25200.20404000
...................CCTGGAAACAAATCGTCAGGCA....................................................................................................................................................22200.20404000
...........................CAAATCGTCAGGCACCGTCACG............................................................................................................................................22200.15303000
.....................TGGAAACAAATCGTCAGGCACCGT................................................................................................................................................24200.15303000
..........................................................AGATGCTTCAACTGCTCAGGATGG...........................................................................................................24200.15303000
..............................................................GCTTCAACTGCTCAGGATGGGGG........................................................................................................23200.15303000
...........................CAAATCGTCAGGCACCGTCACGAGTG........................................................................................................................................26200.15302010
..................................................................CAACTGCTCAGGATGGGGGCATT....................................................................................................23200.10202000
......AACTGCCGTGGCGCCTGGAAA..................................................................................................................................................................21200.10200002
....................................................................................................................................TTTCAAGTGTGGCATAGTGG.....................................20200.10202000
.....................TGGAAACAAATCGTCAGGCACCG.................................................................................................................................................23200.10202000
................................................................................................................................CATGTTTCAAGTGTGGCATAGTGGG....................................25200.10202000
.........................................................................................ACAAGAGTCAATGCCCGAAACCAATG..........................................................................26200.10202000
.............................................................TGCTTCAACTGCTCAGGATGGGGG........................................................................................................24200.10202000
..........................................................................................................................CGAATTCATGTTTCAAGTGTGGCA...........................................24200.10202000
......AACTGCCGTGGCGCCTGG.....................................................................................................................................................................18200.10202000
.................................................................TCAACTGCTCAGGATGGGGGC.......................................................................................................21200.10200020
......................................................................................................CCCGAAACCAATGAGACCTCCGAA...............................................................24200.10202000
AACAACAACTGCCGTGGCGCCTGG.....................................................................................................................................................................24200.10202000
......................................................................................ATTACAAGAGTCAATGCCCGA..................................................................................21200.05100100
..................................................................CAACTGCTCAGGATGGGGGCA......................................................................................................21200.05101000
......................................................................TGCTCAGGATGGGGGCATTACAAGAG.............................................................................................26200.05101000
.......................................................................................................................................CAAGTGTGGCATAGTGGG....................................18200.05101000
........................................................................................................................................................GCCACAGCTACAAAAACTGCCCG..............23200.05101000
....................................................................................................................................TTTCAAGTGTGGCATAGTGGG....................................21200.05100001
...........................................................GATGCTTCAACTGCTCAGGATGGGGG........................................................................................................26200.05101000
........................................................................................................................................AAGTGTGGCATAGTGGGCCAA................................21200.05100010
.........................AACAAATCGTCAGGCACCGG................................................................................................................................................20200.05110000
.............GTGGCGCCTGGAAACAAATCG...........................................................................................................................................................21200.05100100
........................................................................................................................................AAGTGTGGCATAGTGGGCCACAGC.............................24200.05101000
AACAACAACTGCCGTGGCGC.........................................................................................................................................................................20200.05100010
..........................ACAAATCGTCAGGCACCGTCACGAG..........................................................................................................................................25200.05101000
...........................CAAATCGTCAGGCACCGTCACGAGTGA.......................................................................................................................................27200.05101000
...........................CAAATCGTCAGGCACCGTCAC.............................................................................................................................................21200.05101000
................................................................TTCAACTGCTCAGGATGGGGGC.......................................................................................................22200.05100001
..............................................................................................................................TTCATGTTTCAAGTGTGGCATAGTGGGC...................................28200.05101000
..................................................................................................................................TGTTTCAAGTGTGGCATAGTGG.....................................22200.05100001
................................................................TTCAACTGCTCAGGATGGGGG........................................................................................................21200.05101000
...................................................................AACTGCTCAGGATGGGGGCA......................................................................................................20200.05100100
.....................................................................................CATTACAAGAGTCAATGCCCGA..................................................................................22200.05101000
...............................................................................................................................TCATGTTTCAAGTGTGGCATAGTGG.....................................25200.05100010
.....CAACTGCCGTGGCGCCTGGAAACAAA..............................................................................................................................................................26200.05100010
..............................................................................................................................................................GCTACAAAAACTGCCCGTCTCGAA.......24200.05101000
.........................................................................................................................CCGAATTCATGTTTCAAGTGTGG.............................................23200.05101000
................................................................................................................................CATGTTTCAAGTGTGGCA...........................................18200.05101000
........................................................................................................................................................GCCACAGCTACAAAAACTGC.................20200.05101000
.................................................................................................................................ATGTTTCAAGTGTGGCATAGTGGGC...................................25200.05101000
..................................................................................................................................TGTTTCAAGTGTGGCATAGTG......................................21200.05100010
...............................................................................TGGGGGCATTACAAGAGTC...........................................................................................19200.05101000
.......................................................................................................................................CAAGTGTGGCATAGTGGGCC..................................20200.05100100
..........................ACAAATCGTCAGGCACCGTCACGAGTGA.......................................................................................................................................28200.05101000
..........................ACAAATCGTCAGGCACCGTC...............................................................................................................................................20200.05100010
........................................................................................TACAAGAGTCAATGCCCGAAACCAATG..........................................................................27200.05101000
.....................................................................................................................................................TGGGCCACAGCTACAAAAACTG..................22200.05101000
droKik1
A-------------------------------------------------GCGAGACTCGTTGCTTCAATTGCAACGCGAAGGGGCACTGGAAGAGGGAGTGCACTAAGCCAAAGAGGTCGCCAGGTTCGTGCTACGGATGCGGCGCAGAGGATCAC--------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 02:47 AM