ID:

dwi_186

 Coordinate:

scf2_1100000004902:7275739-7275798 +

 Confidence:

candidate

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-32.2 -32.1 -32.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AGGCATCAATTATATTAGAAAAATATTGAGAATGATGTGAAAACTACTTTTGATAATTTTATGATATTGGATTATATTTCGATGAATCCAGTAACATCAAATTATTAAAAGTGTTTTCATAACCGAAACAAATGCAAAATTTACTCATATATGCTAAAGT

***********************************(((((((((.((((((((((((((.(((.(((((((((.(((....)))))))))))).))).)))))))))))))))))))))))*************************************** 		Read size # Mismatch Hit Count Total Norm Total M020

head

 V118

embryo

 V117

male body		 M045

female body

 V119

head
..................................................TGATAATTTTATGATATTGGAT........................................................................................ 22 0 1 717.00 717 376 216 89 23 13
..................................................TGATAATTTTATGATATTGGATC....................................................................................... 23 1 1 50.00 50 42 2 1 3 2
..................................................TGATAATTTTATGATATTGGATT....................................................................................... 23 0 1 26.00 26 10 12 0 2 2
..................................................TGATAATTTTATGATATTGGATA....................................................................................... 23 1 1 13.00 13 5 1 4 1 2
..................................................TGATAATTTTATGATATTGGA......................................................................................... 21 0 1 13.00 13 0 7 3 3 0
..................................................TGATAATTTTATGATATTGGAC........................................................................................ 22 1 1 9.00 9 9 0 0 0 0
..................................................TGATAATTTTATGATATTGGAA........................................................................................ 22 1 1 4.00 4 0 1 2 0 1
..................................................TGATAATTTTATGATATTGGATCC...................................................................................... 24 2 1 4.00 4 3 1 0 0 0
..................................................TGATAATTTTATGATATTTGAT........................................................................................ 22 1 1 2.00 2 0 2 0 0 0
..................................................TCATAATTTTATGATATTGGAT........................................................................................ 22 1 1 2.00 2 1 1 0 0 0
...................................................TATAATTTTATGATATTGGAT........................................................................................ 21 1 1 2.00 2 0 2 0 0 0
..................................................TGATAATTTTAGGATATTGGAT........................................................................................ 22 1 1 1.00 1 0 0 0 1 0
..................................................TGATAATTTCATGATATTGGAT........................................................................................ 22 1 1 1.00 1 0 0 0 0 1
....................AAATATGGAGTATGATGTGA........................................................................................................................ 20 2 1 1.00 1 0 1 0 0 0
..................................................TGATAATTTTATGAAATTGGAT........................................................................................ 22 1 1 1.00 1 0 1 0 0 0
..................................................TGATAATTTTATGATATTGGCT........................................................................................ 22 1 1 1.00 1 0 0 1 0 0
..................................................TGATAGTTTTATGATATTGGAT........................................................................................ 22 1 1 1.00 1 1 0 0 0 0
..................................................TAATAATTTTATGATATTGGAT........................................................................................ 22 1 1 1.00 1 1 0 0 0 0
..................................................TGATAATTTTATGATATTGG.......................................................................................... 20 0 1 1.00 1 0 1 0 0 0
..................................................TGATAATTTTATGATGTTGGAT........................................................................................ 22 1 1 1.00 1 0 1 0 0 0
..................................................TGATAATTTTATGATATTGGATG....................................................................................... 23 1 1 1.00 1 1 0 0 0 0
......................................................................................TCCAGTAACATCAAATTATT...................................................... 20 0 1 1.00 1 0 0 0 1 0
..................................................TGATAATTTTATCATATTGGAT........................................................................................ 22 1 1 1.00 1 1 0 0 0 0
..................................................TGATACTTTTATGATATTGGAT........................................................................................ 22 1 1 1.00 1 0 1 0 0 0
..................................................TGATCATTTTATGATATTGGAT........................................................................................ 22 1 1 1.00 1 1 0 0 0 0
...................................................GATAATTTTATGATATTGGAT........................................................................................ 21 0 1 1.00 1 0 0 0 1 0
...................................................GATAATTTTATGATATTGGATC....................................................................................... 22 1 1 1.00 1 0 0 0 1 0
....................AAATATGGCGTATGATGTGA........................................................................................................................ 20 3 14 0.86 12 0 11 0 1 0
..................................................TGATAATTTTATGACATTGGAT........................................................................................ 22 1 2 0.50 1 0 0 1 0 0
..................................................TGATAATTTTATGACATTGGA......................................................................................... 21 1 2 0.50 1 0 0 0 0 1
..................................................TGATAATTTTATTATATTGGAT........................................................................................ 22 1 2 0.50 1 1 0 0 0 0
....................................................TGAATTTTATGATATTGGAT........................................................................................ 20 2 6 0.17 1 0 1 0 0 0
.........................................................................ATATTTCGGTGAGGCCAGT.................................................................... 19 3 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

TCCGTAGTTAATATAATCTTTTTATAACTCTTACTACACTTTTGATGAAAACTATTAAAATACTATAACCTAATATAAAGCTACTTAGGTCATTGTAGTTTAATAATTTTCACAAAAGTATTGGCTTTGTTTACGTTTTAAATGAGTATATACGATTTCA

***************************************(((((((((.((((((((((((((.(((.(((((((((.(((....)))))))))))).))).)))))))))))))))))))))))*********************************** 		Read size # Mismatch Hit Count Total Norm Total V118

embryo
..........................................................................AAAAAGATACTTGGGTCAT................................................................... 19 3 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004902:7275689-7275848 + dwi_186 candidate AGGCATCAATTATATTAGAAAAATATTGAGAATGATGTGAAAACTACTTTTGATAATTTTATGATATTGGATTATATTTCGATGAATCCAGTAACATCAAATTATTAAAAGTGTTTTCATAACCGAAACAAATGCAAAATTTACTCATATATGCTAAAGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AGGCATCAATTATATTAGAAAAATATTGAGAATGATGTGAAAACTACTTTTGATAATTTTATGATATTGGATTATATTTCGATGAATCCAGTAACATCAAATTATTAAAAGTGTTTTCATAACCGAAACAAATGCAAAATTTACTCATATATGCTAAAGTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..................................................TGATAATTTTATGATATTGGAT........................................................................................221717.00717376238921613
..................................................TGATAATTTTATGATATTGGATC.......................................................................................23150.0050423122
..................................................TGATAATTTTATGATATTGGATT.......................................................................................23126.00261020122
..................................................TGATAATTTTATGATATTGGATA.......................................................................................23113.001351412
..................................................TGATAATTTTATGATATTGGA.........................................................................................21113.001303370
..................................................TGATAATTTTATGATATTGGAC........................................................................................2219.00990000
..................................................TGATAATTTTATGATATTGGAA........................................................................................2214.00400211
..................................................TGATAATTTTATGATATTGGATCC......................................................................................2414.00430010
..................................................TGATAATTTTATGATATTGG..........................................................................................2011.00100010
..................................................TGATAATTTTATGATATTGGATG.......................................................................................2311.00110000
......................................................................................TCCAGTAACATCAAATTATT......................................................2011.00101000
...................................................GATAATTTTATGATATTGGAT........................................................................................2111.00101000
...................................................GATAATTTTATGATATTGGATC.......................................................................................2211.00101000

Generated: 10/20/2015 at 06:56 PM