ID:

dwi_1847

 Coordinate:

scf2_1100000004590:4303390-4303470 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.8 -7.8 -7.7

Flybase annnotation

CDS [Dwil\GK16502-cds]; CDS [Dwil\GK16502-cds]; exon [dwil_GLEANR_16866:4]; exon [dwil_GLEANR_16866:3]; intron [Dwil\GK16502-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------##################################################
GGTTACGTATGCCCAAAATATACGAAGTGGTGTTGGAATTGCCACAAAAGGTGGAACAGCAACAGGAGCAGTAGTTGCACCAGCAGCAGCAACAACAACAACACGACTTCAAGGAGGTGTAGCAGGAGCAGGAGCCACAATTATACCCACAATTAGCGCTAATAAAATCATCAATATCAAT
******************************************************..........((((..((.((((.....((....)).....))))...))..))))........*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
 V119
head
 V117
male body
..............................................................................................................AAGGAGGTGTAGCAGGAGCAGGAGCC............................................. 26 0 1 2.00 2 0 0 2 0
...................................................................................................AACACGACTTCAAGGAGGT............................................................... 19 0 1 2.00 2 1 0 0 1
.....CGTATGCCCAAAATATACAAAGTGGT...................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0
............................................CAAAAGGTGGAACAGCAACA..................................................................................................................... 20 0 1 1.00 1 1 0 0 0
........................................................................................................GACTTCAAGGAGGTGTAGC.......................................................... 19 0 1 1.00 1 1 0 0 0
......................................................AACAGCAACAGGAGCAGTAGT.......................................................................................................... 21 0 1 1.00 1 0 0 0 1
......................................................AACAGCAACAGGAGCAGTAGTTG........................................................................................................ 23 0 1 1.00 1 0 0 1 0
................................................................GGAGCAGTAGTTGCACCAGCAGCAG............................................................................................ 25 0 1 1.00 1 0 1 0 0
...............................GTTGGAATTGCCACAAAAGGTGGAACA........................................................................................................................... 27 0 1 1.00 1 0 0 0 1
...........................................................................................................................AGGAGCAGGAGCCACAATTATACC.................................. 24 0 1 1.00 1 1 0 0 0
..............................................................................................................................AGCAGGAGCCACAATTATACCCACAATT........................... 28 0 1 1.00 1 1 0 0 0
......................................................AACAGCAACAGGAGCAGTAGTTGC....................................................................................................... 24 0 1 1.00 1 1 0 0 0
.....................................................................AGTAGTTGCACAATCAGCAGCA.......................................................................................... 22 2 1 1.00 1 0 1 0 0
.............CAAAATATACGAAGTGGTGT.................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
....................................................................CAGTAGTTGCACAATCAGCAGC........................................................................................... 22 2 1 1.00 1 0 1 0 0
........................................................................................................................AGCAGGAGCAGGAGCCACAATTATACC.................................. 27 0 1 1.00 1 1 0 0 0
.........................................................AGCAACAGGAGCAGTAGTT......................................................................................................... 19 0 1 1.00 1 0 0 1 0
................................................................GGAGCAGTAGTTGCACCAGCAGCAGC........................................................................................... 26 0 1 1.00 1 1 0 0 0
....................................................................CAGTAGTTGCACAATCAGCAGCAGC........................................................................................ 25 3 2 0.50 1 0 1 0 0
.........................................................................................CAACAACAACAACACGACT......................................................................... 19 0 2 0.50 1 1 0 0 0
....................................................................CAGTAGTTGCACAATCAGCA............................................................................................. 20 2 3 0.33 1 0 1 0 0
........................TAGTGGGGTTGGAATTGCC.......................................................................................................................................... 19 2 3 0.33 1 0 1 0 0
...............................................................................................................AGGAGGTGTGGAAGGATCAGGA................................................ 22 3 4 0.25 1 0 0 0 1
....................................................................................AGCAGCAACAACACCAACACG............................................................................ 21 1 13 0.08 1 0 1 0 0
..............................................................................ACCAGCAGCAGCAACAACAACAA................................................................................ 23 0 18 0.06 1 1 0 0 0
..............................................................................ACCAGCAGCAGCAACAACAACA................................................................................. 22 0 20 0.05 1 0 0 1 0

Anti-sense strand reads

CCAATGCATACGGGTTTTATATGCTTCACCACAACCTTAACGGTGTTTTCCACCTTGTCGTTGTCCTCGTCATCAACGTGGTCGTCGTCGTTGTTGTTGTTGTGCTGAAGTTCCTCCACATCGTCCTCGTCCTCGGTGTTAATATGGGTGTTAATCGCGATTATTTTAGTAGTTATAGTTA
***************************************************************..........((((..((.((((.....((....)).....))))...))..))))........****************************************************** 		Read size # Mismatch Hit Count Total Norm Total M020
head
........................................................................TCAACGTGTTAGTCGTCGT.......................................................................................... 19 2 19 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004590:4303340-4303520 + dwi_1847 GGTTA--C-----GTATGCCCAAAATATACGAAGTGG-TGTTGGAATTGC-------------------------------------------------------------------------------CACAAAAGGTG---G---AAC---------AG------------CAACAGGAGCAGTAGTTG---CACC------------------AG------C---------------AGCAGCAACAACAACAACAC------------------GACT--------TCAAGGA-----------GGTGTA---------GC-AGGAGCAGGA------G---CCACA-----------ATTATACCCACA------A------------------------------TTAGCG-CTAATAAAATCAT---------------------------------------------CAATATCAAT
droVir3 scaffold_13052:1899578-1899760 - TGCGC--C-----CAATAC------------CTG-------------------------------TG-------------CA-----AATGCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------AAT------------TG------C---------------AGCAGCAACAGCAGCTTCAACTGCCTCAGCT-------------------------------------GCAGCA---------AC-AGCAACAGCAACAGCAGCAACAACA-----------GGTATTGGC------------GC-----------------------------------------AGCAGCAGCAGCTAATACCAATGCTAAACACCTCAAATCAAAACAAAAATAAAAAGAAAA
droMoj3 scaffold_6680:1708925-1709073 + GGAGT--A-----GT-----------------------AGTGGTAAA----------------------------------------------------------------------------------CGCCGCAATAA---TAGCAGC---------AG------------CAACAG---------AA---------GTAGC---------------AGCAACAG---------CAGCAGCAGCAACAGCAA---------------CAGCAGCA-------------------------------GCAGCA---------AC-AGTAACAGCA------G---CAGCA-----------GCAACAGCAACA------GCAGCAGCAGCA--------------------------------ACAGCAG---------------------------------------------CAACAGCAGC
droGri2 scaffold_14853:8433057-8433233 - GGTTA--AAGTC--------------------TT-------------------------------GT-------------CGAGTCGGATGAAGTGGTGGTCG--------------------------CG---CGGCTGGAGG---AGC---------AGCAGCAGCA---------------GCAACAG---CGA------------------------CAACAG---------CAG---CAACAGCAACA---ACAA---------CATCA------ATT--AGATGTC----------------GCTGCA---------GC-TGCAGCTGGT------G-----------------------------------------------CC---ACGCAGCA-GCAGCATTCGGCGAATGATGGGAGTGT---------------------------------------------GGAGATGAAA
dp5 2:6797066-6797262 + GGATG--T-----GTACCA------------CAC-------------------------------TT-------------TGGGCCAGAA-----G---AACACGCAGGCCGAG-----------------------------G---AACAGCAGCAG---------CAGA------------AGGA------------G---CAGCAGTTGCAGAAGGAGCAAGAG---------CAGCAATATCAACA------GCAA---------CAGCA------ACAGCAGAAGT-------------T---CCAGCA---------AC-AGGAACAGCA------G---CAATA--------------TATGCAACA------GCA------------ACATATGCAACAGCAAAA--------TATGCAGCAG---------------------------------------------CAACATCTGC
droPer2 scaffold_44:194240-194403 + GGATATAC-----CTATTGT-----------CAG-------------------------------TG-------------TC-----TCCGAGCTG---GCCTTGCAGGAGCAG-----------------------------G---AAC---------AGCAGCAGCA------ACAGCAG------------CAGC------------------AGCAGCAAC---------------AGCAGCAACAGCAACAGCAA---------------------C----------------A---------AGTACA---------AC-AGCAGCAGC------------AGCA-----------ACAAATGCAACA------GCAGCAGCTACA--------------------------------ACAGCAG---------------------------------------------CAATATCAGC
droAna3 scaffold_12929:1888878-1889052 + AGTTA--C-----TTTAGC------------CAG-------------------------------CC-------------TA-----AGTGAGATA---GCC---------ACTG--------------CCCGCCAGCAG---C---AAC---------AG------------CAACAGCAACAGAA------------G---TTGCTACTGCAACAGCAGCAAC---------------AGCAACAA---------CA------------GCA----------------------------------AC----------------AGCAGC---------AGCAACAACA-----------GCAACAGCA------------AC-----------------------------------------AGCAGCAGCAACTGAAACTGCCACGAAGGATTAT----------------CAATTTTAGC
droBip1 scf7180000396696:708440-708632 + TGTCA--C-----CTACGCCCAGAATATACGCAGCGG-CGTGGGTGTTCCCAAAGCCACTGCTCCTGCCCCAGTACCCAT----------------------------------------------------------------------------------------------CGA------AT---------------------------------CGGCCAA--------GATTGTCATCAACAACA------ACAA---------CATCA------AGC--CGATATCGTTGCTG-----C---GCATCA---------AC-AACAACAACA------A---GCCCA-----------TCGTCGGCAGTA------TCCTTGCCAGCA--------------------------------ATACCAT---------------------------------------------CAAGACCAGT
droKik1 scf7180000302621:77336-77476 + GCAAC--AA-----------------------------------------------------------------------------------------------------------------------------------------------CACAGGCAGCAGCAGCA---------CCAGCAGTAATAG---CAGC------------------AG------C---------------AGTAGCAACAACAACAACAACAACAACAGCA-------------------------------------GCAGCA---------GC-AGCAGTAGCA------G-----------------------------CG------GCAGCAACAATA---ACACACCC-AACGGTGC------------GCAGCAG---------------------------------------------CAGCATTTGC
droFic1 scf7180000453215:859386-859576 - GACAA--C-----TTATTGGCAACACACACGAAACTT-GT-TGCGTTGG-------------------------------------------------------------------------------------CAACAA---C---AAC---------AG------------CA---------GCAACAACAAC---AA---------------CAGCAGCAACAACAACAGCAAC---AACAACAA---------------------CAGCAACAGCAGC---AAACAC-------------ATCGCAGACGGAGGCAGCAAC-AACAACAGCA------A--------------------ACACAGCTGCA---------------------------ACAATAGCAAAC--------ATAGGAGCAA---------------------------------------------CACTATCAAA
droEle1 scf7180000491212:2559928-2560087 + CAAAG--T-----GGCTTT-----------------------TT-------------------------------------------------------------------AATG--------------CACAGCAGGAG---C---AACGACAGGAT---------CAAC------------AGGA------------G---CAGTCACTGCAGCAGGAGCAGC---------------AGTAGCAGCAGCAACAACGT---------AA-------------------------------------TCTACG---------ACCAGAAACAGAA------G---CAACA-----------GTTAAAGTAACA------AAAGTAGTGGCA--------------------------------ACACTAT---------------------------------------------TAACACCAGC
droRho1 scf7180000779900:519850-520022 + TGATG--T-----TTACCA------------CAC-------------------------------GC-------------TGGGGCAGAA-----G---AACACGCAGGCTGAG-----------------------------G---AAC---------AGCAGCAGCA---------------GCAACTG---GAAA------------------AGCAGCAGC---------------AACAACAAAT------GCAG---------CAGCA------ATATCAGGAGC-------------A---GCAGCA---------AC-AACAGCAGCA------G--------------------CTATATCAACAACAACAGCAATATCAGAT--------------------------------GCAACTG---------------------------------------------GAAAAGCAAC
droBia1 scf7180000302075:432062-432238 + GTGAA--------GTATCCCTAAAGCGCTCAAAGCAACAG-------------------------------------------------------------------------------------------------------T---GACAGCAGCAA---------CAACAGCA---------GCAACAGCAAT---AG---------------CAGCAGCATCAG---------CAGCAGCAGCAACA------ACAA---------CAGCAACAGCAAT---AGTA-------------------ATAGCA---------GC-AGCAGCAGCA------G---CAGCA-----------GCAACAGCAGCA------GCAGCAGCAACA--------------------------------GCAGCAA---------------------------------------------CAACAGCAAC
droTak1 scf7180000415111:223159-223318 - AAATT--GA-----------------------AT------------------------------------------------------------------------------TGGAGTTCCATCAG-----------------------------------------------CAGCAGCAA------------CAGC------------------AGGAGCAACTG---------C---AGCAGCAGCAACA---ACAA---------CAGCT----------------------------------AC----------------AGCAGC---------AGCAACAGCA-----------GGAATTGCTGCT------ACAGCAGCAACAGCAGCTGCAACATCAGCCATTAGCG-CCGCTGCAAATTG---------------------------------------------AAAAACCGCC
droEug1 scf7180000409110:929041-929207 + TGCTC--AGATCA--------------ACGGCAG------------------------------------------------------------------------------CGGAGTTGCAACTGCAGCACCGCAACAG---C------------------------------AACAGCAGCAGCTATCG---C------AGC------------AG------C---------------AGCAGCAACAGCAACAGTTG---------------------C----------------AATTACAGCAGCAACA---------GC-AGCAGCAGCT------A---CAACA-----------GCAACAGCAGCT------ACAGCAGCAGCA--------------------------------ACTTCAG---------------------------------------------CAGCAACAGC
dm3 chrX:12542563-12542711 + TGCTC--AGATCA--------------ACGGCAG------------------------------------------------------------------------------CGGAGTTGCAACTGCAGCACCGCAGCAG---C---AAC---------AG------------CAGCAGCAGCAACAGT---------------------------------------------------TGCAGCAATC------ACAG---------CA-------------------------------------ACAACA---------GC-AGCAGCAGCT------A---CAGCA-----------GCAACAGCAGCA------GCAGCAACAACA--------------------------------ACAGCAG---------------------------------------------CAGCAGCAAC
droSim2 x:12441281-12441446 - GGTAA--C-----GTACGCCCAAAATATCCGTAGCGG-AGTGGGCGTGGCGA---CCAAGGGCGGTACACCCATACCCAT----------------------------------------------------------------------------------------------AAG------TG---------------------------------GAGCCAA--------AATTGT-TGTAG--GCAATA---ATAA---------AATCA------AGC--CAATATCGTTGT--------------------------------------------------TG-C-----------GCATCAACAACA------ATAACAACAATA--------------------------------TAGTCAC---------------------------------------------CAGCATTAAC
droSec2 scaffold_34:421717-421856 + GCTGG--G---------------------------------------------------------------------------------------------C---------ATGA--------------CCCAGCAGCTG---C---AAC---------AG------------CAACAGCAGCAGCAGGTG---C------------AAC------AG------C---------------AACAACATCAGCACCAGCAC---------------------C----------------A---------GGTGCA---------AC-AGCAACAGCA------G---CATCA-----------GCAGCAGCAGCA------GCAGCAACAGCA--------------------------------ACAACAA---------------------------------------------CAACAACAGC
droYak3 X:3332125-3332283 - TGCCC--GAATC------------------GCAC------------------------------------------------------------------------------CAGAATCACAACAGCAACAT-GCAACAC---------------------------------------------C------------------------------AGCAGCAGC---------------AGCAGCAACAGCAACAGCAA---------CAC------TACT-------------------------------A---------CC-AGCAACAGC------AGCAACAGCAGGTTGCCCACAATCATAGCCATC---------------ATC---ACATGACT-ACCGCTTA------------CTACCAA---------------------------------------------CAGCAGCAAC
droEre2 scaffold_4644:399397-399554 - CAATG--T-----TG-----------------------TGTTGTGCTTG----------------------------------------------------------------------------------CACCAACAC---C---AACAGCAACAC---------CAACAGCAACAA---------CAA---CACC------------------AA---CAGCAA---------CACCAACAGCAACAGCAACACCAA---------CA-------------------------------------GCAACA---------CC-AACAGCAACA------C---CAACA-----------GCTACACCAACA------GCAACACCAACA--------------------------------GCAACAC---------------------------------------------CAACAGCAAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
GGTTA--C-----GTATGCCCAAAATATACGAAGTGG-TGTTGGAATTGC-------------------------------------------------------------------------------CACAAAAGGTG---G---AAC---------AG------------CAACAGGAGCAGTAGTTG---CACC------------------AG------C---------------AGCAGCAACAACAACAACAC------------------GACT--------TCAAGGA-----------GGTGTA---------GC-AGGAGCAGGA------G---CCACA-----------ATTATACCCACA------A------------------------------TTAGCG-CTAATAAAATCAT---------------------------------------------CAATATCAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................AAGGA-----------GGTGTA---------GC-AGGAGCAGGA------G---CC..........................................................................................................................................2612.00200002
...............................................................................................................................................................................................................................................................AACAC------------------GACT--------TCAAGGA-----------GGT...............................................................................................................................................................................1912.00200110
...................................................................................................................................CAAAAGGTG---G---AAC---------AG------------CAACA....................................................................................................................................................................................................................................................................................................................2011.00100010
......................................................................................................................................................................................................................................................................................GACT--------TCAAGGA-----------GGTGTA---------GC-................................................................................................................................................................1911.00100010
...................................................................................................................................................AAC---------AG------------CAACAGGAGCAGTAGT.........................................................................................................................................................................................................................................................................................................2111.00100100
...................................................................................................................................................AAC---------AG------------CAACAGGAGCAGTAGTTG---....................................................................................................................................................................................................................................................................................................2311.00100001
..................................................................................................................................................................................GGAGCAGTAGTTG---CACC------------------AG------C---------------AGCAG.................................................................................................................................................................................................................................................2511.00101000
.......................................GTTGGAATTGC-------------------------------------------------------------------------------CACAAAAGGTG---G---AAC---------A......................................................................................................................................................................................................................................................................................................................................2711.00100100
......................................................................................................................................................................................................................................................................................................................................AGGAGCAGGA------G---CCACA-----------ATTATACC....................................................................................................................2411.00100010
.........................................................................................................................................................................................................................................................................................................................................AGCAGGA------G---CCACA-----------ATTATACCCACA------A------------------------------TT.........................................................................2811.00100010
...................................................................................................................................................AAC---------AG------------CAACAGGAGCAGTAGTTG---C...................................................................................................................................................................................................................................................................................................2411.00100010
....................CAAAATATACGAAGTGG-TGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.........................................................................................................................................................................................................................................................................................................................A---------GC-AGGAGCAGGA------G---CCACA-----------ATTATACC....................................................................................................................2711.00100010
...............................................................................................................................................................AG------------CAACAGGAGCAGTAGTT........................................................................................................................................................................................................................................................................................................1911.00100001
..................................................................................................................................................................................GGAGCAGTAGTTG---CACC------------------AG------C---------------AGCAGC................................................................................................................................................................................................................................................2611.00100010
.....................................................................................................................................................................................................................................................CAACAACAACAACAC------------------GACT--------....................................................................................................................................................................................................1920.50100010
...................................................................................................................................................................................................ACC------------------AG------C---------------AGCAGCAACAACAACAA.....................................................................................................................................................................................................................................23180.06100010
...................................................................................................................................................................................................ACC------------------AG------C---------------AGCAGCAACAACAACA......................................................................................................................................................................................................................................22200.05100001
droVir3
TGCGC--C-----CAATAC------------CTG-------------------------------TG-------------CA-----AATGCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------AAT------------TG------C---------------AGCAGCAACAGCAGCTTCAACTGCCTCAGCT-------------------------------------GCAGCA---------AC-AGCAACAGCAACAGCAGCAACAACA-----------GGTATTGGC------------GC-----------------------------------------AGCAGCAGCAGCTAATACCAATGCTAAACACCTCAAATCAAAACAAAAATAAAAAGAAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCAAATCAAAACAAAAATAAAAAGA...2717.007000000000000000000000001203010000000000000000000000000000000000
.................................................................TG-------------CA-----AATGCAATT----------------------------------------------------------------------------------ACAATTGCCAG.........................................................................................................................................................................................................................................................................................................2416.006000000000000000000000000000600000000000000000000000000000000000
.................................................................TG-------------CA-----AATGCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------.............................................................................................................................................................................................................................................................................................2714.004000000000000000000000000000202000000000000000000000000000000000
.......................................................................................AATGCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------AAT------------T.............................................................................................................................................................................................................................................................................2713.003003000000000000000000000000000000000000000000000000000000000000
..........................................................................................GCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------AAT------------TG------C---------------......................................................................................................................................................................................................................................................2613.003002000000000000000000000001000000000000000000000000000000000000
.........................................................................................TGCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------.............................................................................................................................................................................................................................................................................................2112.002000010000000000000000000000000010000000000000000000000000000000
..........................................................................................GCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------AAT------------TG------C---------------AG....................................................................................................................................................................................................................................................2812.002002000000000000000000000000000000000000000000000000000000000000
................................................................................CA-----AATGCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------AA...........................................................................................................................................................................................................................................................................................2712.002000000000000000000000000000200000000000000000000000000000000000
.......................................................................................AATGCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------A............................................................................................................................................................................................................................................................................................2412.002002000000000000000000000000000000000000000000000000000000000000
..........................................................................................GCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------AAT------------..............................................................................................................................................................................................................................................................................2312.002001000000000000000000000100000000000000000000000000000000000000
.......................................................................................AATGCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------.............................................................................................................................................................................................................................................................................................2312.002000000000000000000000000010000000000000100000000000000000000000
..........................................................................................GCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------AAT------------T.............................................................................................................................................................................................................................................................................2412.002002000000000000000000000000000000000000000000000000000000000000
.................................................................TG-------------CA-----AATGCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------A............................................................................................................................................................................................................................................................................................2812.002000000000000000000000000010000010000000000000000000000000000000
..................C------------CTG-------------------------------TG-------------CA-----AATGCAATT----------------------------------------------------------------------------------ACAATTGCCC..........................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000010000000000000000000000000000000
..........................................................................................GCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------AAT------------TG------C---------------AGC...................................................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
.............CAATAC------------CTG-------------------------------TG-------------CA-----AATGCAATT----------------------------------------------------------------------------------ACAATT..............................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000100000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................ACAACA-----------GGTATTGGC------------GC-----------------------------------------AGCAGC......................................................2311.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................TGCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------AAT------------T.............................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.................................................................TG-------------CA-----AATGCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---....................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
........................................................................................ATGCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------AAT------------T.............................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACACCTCAAATCAAAACA...............2111.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCTAAACACCTCAAATCAAAACA...............2711.001000000000000000000000000000100000000000000000000000000000000000
................TAC------------CTG-------------------------------TG-------------CA-----AATGCAATT----------------------------------------------------------------------------------ACAATTGCC...........................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACACCTCAAATCAAAACAAAA............2411.001001000000000000000000000000000000000000000000000000000000000000
..................C------------CTG-------------------------------TG-------------CA-----AATGCAATT----------------------------------------------------------------------------------ACAATTGCCAG.........................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAATGCTAAACACCTCAA........................2111.001000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................CAGCAACAGCAGCTTCAACTG...............................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................AATGCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------AAT------------..............................................................................................................................................................................................................................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................GCCAGCG---C------AAT------------TG------C---------------AGCAGCAACAGCA.........................................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACACCTCAAATCAAAACAAAAATA.........2711.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................GCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------.............................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................ATGCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------AA...........................................................................................................................................................................................................................................................................................2411.001000000000000000000000000010000000000000000000000000000000000000
..........................................................................................GCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------AAT------------TG------C---------------CC....................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................GCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------AAT------------TG------C---------------AGT...................................................................................................................................................................................................................................................2911.001000000000000000000000000000000000001000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................CA-----------GGTATTGGC------------GC-----------------------------------------AGCAGCAG....................................................2111.001000000000000000000000000000001000000000000000000000000000000000
..................C------------CTG-------------------------------TG-------------CA-----AATGCAATT----------------------------------------------------------------------------------ACAATT..............................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................................................................................CG---C------AAT------------TG------C---------------AGCAGCAACAGCAGCTC.....................................................................................................................................................................................................................................2611.001000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................T------------TG------C---------------AGCAGCAACAGCAGCTT.....................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
..............AATAC------------CTG-------------------------------TG-------------CA-----AATGCAATT----------------------------------------------------------------------------------ACAATGT.............................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000010000000000000000000000000000000000000
.............CAATAC------------CTG-------------------------------TG-------------CA-----AATGCAATT----------------------------------------------------------------------------------ACAAT...............................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCAAATCAAAACAAAAATAAAAAG....2611.001000000000000000000000000001000000000000000000000000000000000000
........................................................................................ATGCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------.............................................................................................................................................................................................................................................................................................2211.001000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACACCTCAAATCAAAACAAAAA...........2511.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................GCAACAACA-----------GGTATTGGC------------GC-----------------------------------------............................................................2011.001000000000100000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCAAATCAAAACAAAAATAAAAAGT...2711.001000000000000000000000000100000000000000000000000000000000000000
..................C------------CTG-------------------------------TG-------------CA-----AATGCAATT----------------------------------------------------------------------------------ACAATTGCCA..........................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000100000000000000000000000000000000000
.......C-----CAATAC------------CTG-------------------------------TG-------------CA-----AATGCAATT----------------------------------------------------------------------------------ACAAT...............................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000100000000000000000000000000000000000
.......................................................................................AATGCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------AAT------------C.............................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAATGCTAAACACCTCAAATCAAAACAT..............2911.001000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACACCTCAAATCAAAACAAAAAT..........2511.001000000000000000000000000000000001000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAATCAAAACAAAAATAAAAAG....2411.001001000000000000000000000000000000000000000000000000000000000000
..................C------------CTG-------------------------------TG-------------CA-----AATGCAATT----------------------------------------------------------------------------------ACAATTGCCT..........................................................................................................................................................................................................................................................................................................2711.001000010000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................CA-----------GGTATTGGC------------GC-----------------------------------------AGCAGTC.....................................................2011.001000000000000000000000000000000000000000100000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCTAAACACCTCAAATCAAAA.................2511.001000010000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCAAATCAAAACAAAAATAAAAA.....2511.001000000000000000000000000001000000000000000000000000000000000000
................................................................................CA-----AATGCAATT----------------------------------------------------------------------------------ACAATTGCCAGCG---C------.............................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................TG------C---------------AGCAGCAACAGCAGCT......................................................................................................................................................................................................................................1950.201000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................C------AAT------------TG------C---------------AGCAGCAACAGC..........................................................................................................................................................................................................................................1970.141000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................GCAGCA---------AC-AGCAACAGCAACA...................................................................................................................................................21200.051000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAGCAGCAAC...........................................................................................................................................21200.051000000000000000000000000000000010000000000000000000000000000000
droMoj3
GGAGT--A-----GT-----------------------AGTGGTAAA----------------------------------------------------------------------------------CGCCGCAATAA---TAGCAGC---------AG------------CAACAG---------AA---------GTAGC---------------AGCAACAG---------CAGCAGCAGCAACAGCAA---------------CAGCAGCA-------------------------------GCAGCA---------AC-AGTAACAGCA------G---CAGCA-----------GCAACAGCAACA------GCAGCAGCAGCA--------------------------------ACAGCAG---------------------------------------------CAACAGCAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................AGCAA---------------CAGCAGCA-------------------------------GCAGCA---------AC-AGTA............................................................................................................................................................2560.171000010
....................................................................................................................................................................................................................................................................................................................................................................................................AGCA--------------------------------ACAGCAG---------------------------------------------CAACAGCAG.20200.102200000
................................................................................................................................................................................................................................................................................................................................................................................GCAACA------GCAGCAGCAGCA--------------------------------AC............................................................20200.102000020
.....................................................................................................................................................................................................................................................CAACAGCAA---------------CAGCAGCA-------------------------------GCAGC.............................................................................................................................................................................22200.102200000
..............................................................................................................................................................................................................................AACAG---------CAGCAGCAGCAACAGC..........................................................................................................................................................................................................................................21200.102200000
......................................................................................................................................................................................................................................................AACAGCAA---------------CAGCAGCA-------------------------------GCAGCA---------...................................................................................................................................................................22200.102200000
............................................................................................................................................................................................................................................................................................................................................................................AACAGCAACA------GCAGCAGCAGCA--------------------------------..............................................................22200.102200000
..........................................................................................................................................................................................................................................................GCAA---------------CAGCAGCA-------------------------------GCAGCA---------AC-................................................................................................................................................................20200.102000020
.....................................................................................................................................................................................................................................................CAACAGCAA---------------CAGCAGCA-------------------------------GCA...............................................................................................................................................................................20200.051100000
.........................................................................................................................................................................................................AGC---------------AGCAACAG---------CAGCAGCAGCAAC.............................................................................................................................................................................................................................................24200.051001000
............................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCA--------------------------------ACAGCAG---------------------------------------------CA........21200.051100000
..........................................................................................................................................................................................................................................................................................................................................ACAGCA------G---CAGCA-----------GCAACAGC....................................................................................................................20200.051000010
...............................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA--------------------------------ACAGCAG---------------------------------------------CAAC......20200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACA------GCAGCAGCA.................................................................................................20200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................CAACA------GCAGCAGCAGCA--------------------------------ACAGCAG---------------------------------------------CA........26200.051000010
.....................................................................................................................................................................................................................................................................................................................................................................................A------GCAGCAGCAGCA--------------------------------ACAGCAG---------------------------------------------CA........22200.051000010
droGri2
GGTTA--AAGTC--------------------TT-------------------------------GT-------------CGAGTCGGATGAAGTGGTGGTCG--------------------------CG---CGGCTGGAGG---AGC---------AGCAGCAGCA---------------GCAACAG---CGA------------------------CAACAG---------CAG---CAACAGCAACA---ACAA---------CATCA------ATT--AGATGTC----------------GCTGCA---------GC-TGCAGCTGGT------G-----------------------------------------------CC---ACGCAGCA-GCAGCATTCGGCGAATGATGGGAGTGT---------------------------------------------GGAGATGAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................CGAGTCGGATGAAGTGGTGGTCG--------------------------.....................................................................................................................................................................................................................................................................................................................................................................2312.00211
........................................................................................................................................................................................GCAACAG---CGA------------------------CAACAG---------CAG---CAACAGC.............................................................................................................................................................................................................................................2611.00110
....................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGGAGTGT---------------------------------------------GGAGATG...1811.00101
..................................................................T-------------CGAGTCGGATGAAGTGGTGGTC................................................................................................................................................................................................................................................................................................................................................................................................2311.00101
................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGATGGGAGTGT---------------------------------------------GGAG......1911.00101
....A--AAGTC--------------------TT-------------------------------GT-------------CGAGTCGGAT............................................................................................................................................................................................................................................................................................................................................................................................................2011.00101
..............................................................................................................................................................................................................................................................................................GATGTC----------------GCTGCA---------GC-TGCA............................................................................................................................................................1811.00110
.................................................................................................................................................................................................................................................................................................................................................................................................................................AATGATGGGAGTGT---------------------------------------------GGAGATG...2111.00110
....................................................................................................................................................GC---------AGCAGCAGCA---------------GCAACAG---CGA------------------------CA.......................................................................................................................................................................................................................................................................2460.17110
...........................................................................................................................................................................................ACAG---CGA------------------------CAACAG---------CAG---CA..................................................................................................................................................................................................................................................1890.11110
...................................................................................................................................................................GCAGCA---------------GCAACAG---CGA------------------------CA.......................................................................................................................................................................................................................................................................18200.05110
dp5
GGATG--T-----GTACCA------------CAC-------------------------------TT-------------TGGGCCAGAA-----G---AACACGCAGGCCGAG-----------------------------G---AACAGCAGCAG---------CAGA------------AGGA------------G---CAGCAGTTGCAGAAGGAGCAAGAG---------CAGCAATATCAACA------GCAA---------CAGCA------ACAGCAGAAGT-------------T---CCAGCA---------AC-AGGAACAGCA------G---CAATA--------------TATGCAACA------GCA------------ACATATGCAACAGCAAAA--------TATGCAGCAG---------------------------------------------CAACATCTGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................AGCA---------AC-AGGAACAGCA------G---CA..........................................................................................................................................1950.2010100000000
droPer2
GGATATAC-----CTATTGT-----------CAG-------------------------------TG-------------TC-----TCCGAGCTG---GCCTTGCAGGAGCAG-----------------------------G---AAC---------AGCAGCAGCA------ACAGCAG------------CAGC------------------AGCAGCAAC---------------AGCAGCAACAGCAACAGCAA---------------------C----------------A---------AGTACA---------AC-AGCAGCAGC------------AGCA-----------ACAAATGCAACA------GCAGCAGCTACA--------------------------------ACAGCAG---------------------------------------------CAATATCAGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................AAC---------AGCAGCAGCA------ACAGCAG------------CA..................................................................................................................................................................................................................................................................................................22200.153003000
.................................................................................................................................................................................AGCAG------------CAGC------------------AGCAGCAAC---------------AGCAGCAA..............................................................................................................................................................................................................................................26200.051010000
........................................................................................................................................................................................................................................................................................................................CA---------AC-AGCAGCAGC------------AGCA-----------ACA.........................................................................................................................20200.051010000
...............................................................................................................................................................................ACAGCAG------------CAGC------------------AGCAGCAAC---------------AG....................................................................................................................................................................................................................................................22200.051010000
.................................................................................................................................................................CAGCAGCA------ACAGCAG------------CAGC------------------AGCAGC........................................................................................................................................................................................................................................................................25200.051100000
.............................................................................................................................................................................................................................CAAC---------------AGCAGCAACAGCAACA......................................................................................................................................................................................................................................20200.051001000
droAna3
AGTTA--C-----TTTAGC------------CAG-------------------------------CC-------------TA-----AGTGAGATA---GCC---------ACTG--------------CCCGCCAGCAG---C---AAC---------AG------------CAACAGCAACAGAA------------G---TTGCTACTGCAACAGCAGCAAC---------------AGCAACAA---------CA------------GCA----------------------------------AC----------------AGCAGC---------AGCAACAACA-----------GCAACAGCA------------AC-----------------------------------------AGCAGCAGCAACTGAAACTGCCACGAAGGATTAT----------------CAATTTTAGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................................................................................................AGCAGCAAC---------------AGCAACAA---------CA------------GCA----------------------------------AC----------------AG..............................................................................................................................................................2660.171010000
...........................................................................................................................................................................................................................AGCAAC---------------AGCAACAA---------CA------------GCA----------------------------------AC----------------AGCA............................................................................................................................................................2570.141010000
...................................................................................................................................................................................................................................................AACAA---------CA------------GCA----------------------------------AC----------------AGCAGC---------AGCAACA..........................................................................................................................................2580.131000001
................................................................................................................................................................................................................................................AGCAACAA---------CA------------GCA----------------------------------AC----------------AGCAGC---------.................................................................................................................................................21200.102000200
....................................................................................................................................................................................................................................................ACAA---------CA------------GCA----------------------------------AC----------------AGCAGC---------AGCAAC...........................................................................................................................................23100.101010000
................................................................................................................................................................................................................................................AGCAACAA---------CA------------GCA----------------------------------AC----------------AGCAGC---------AGC..............................................................................................................................................24130.081000001
...........................................................................................................................................................................................................................................................................................................................................................AACA-----------GCAACAGCA------------AC-----------------------------------------AGCAGCAGCAAC................................................27150.071000001
.....................................................................................................................................................................................................................AACAGCAGCAAC---------------AGCAACAA---------CA------------.......................................................................................................................................................................................................................22180.061010000
..........................................................................................................................................................................................................................................................................................................................................................CAACA-----------GCAACAGCA------------AC-----------------------------------------AGCAGCAGC...................................................25200.051010000
.........................................................................................................................................................................................................................................................................................................................................AGC---------AGCAACAACA-----------GCAACAGC....................................................................................................................21200.051010000
...................................................................................................................................................................................................................................................AACAA---------CA------------GCA----------------------------------AC----------------AGCAGC---------.................................................................................................................................................18200.051010000
..........................................................................................................................................................................................................................................................................................................................................................CAACA-----------GCAACAGCA------------AC-----------------------------------------AGC.........................................................19200.051010000
......................................................................................................................................................................................................................................................AA---------CA------------GCA----------------------------------AC----------------AGCAGC---------AGCAAC...........................................................................................................................................21200.051100000
.......................................................................................................................................................................................................................................................................................................................................GCAGC---------AGCAACAACA-----------GCAAC.......................................................................................................................20200.051100000
....................................................................................................................................................................................................................CAACAGCAGCAAC---------------AGCAACAA---------C....................................................................................................................................................................................................................................22200.051010000
............................................................................................................................................................................................................................................................................................................................................................................AACAGCA------------AC-----------------------------------------AGCAGCAGCAA.................................................20200.051010000
......................................................................................................................................................................................................................................................................................................................................AGCAGC---------AGCAACAACA-----------GCAACAGC....................................................................................................................24200.051010000
.................................................................................................................................................................................................................................................................................A----------------------------------AC----------------AGCAGC---------AGCAACAACA-----------............................................................................................................................19200.051100000
........................................................................................................................................................................................................................AGCAGCAAC---------------AGCAACAA---------CA------------GC.....................................................................................................................................................................................................................21200.051010000
......................................................................................................................................................................................................................................................AA---------CA------------GCA----------------------------------AC----------------AGCAGC---------AGCAACA..........................................................................................................................................22200.051100000
............................................................................................................................................................................................................................................................................................................................................................................AACAGCA------------AC-----------------------------------------AGCAGCAGCAAC................................................21200.051100000
.....................................................................................................................................................................................................................AACAGCAGCAAC---------------AGCAACAA---------.....................................................................................................................................................................................................................................20200.051010000
..........................................................................................................................................................................................................................................................................................................................................GC---------AGCAACAACA-----------GCAACAGC....................................................................................................................20200.051010000
....................................................................................................................................................................................................................................................ACAA---------CA------------GCA----------------------------------AC----------------AGCAGC---------AGC..............................................................................................................................................20200.051001000
...........................................................................................................................................................................................................................................................................................................................................................................CAACAGCA------------AC-----------------------------------------AGCAGCAGC...................................................19200.051010000
droBip1
TGTCA--C-----CTACGCCCAGAATATACGCAGCGG-CGTGGGTGTTCCCAAAGCCACTGCTCCTGCCCCAGTACCCAT----------------------------------------------------------------------------------------------CGA------AT---------------------------------CGGCCAA--------GATTGTCATCAACAACA------ACAA---------CATCA------AGC--CGATATCGTTGCTG-----C---GCATCA---------AC-AACAACAACA------A---GCCCA-----------TCGTCGGCAGTA------TCCTTGCCAGCA--------------------------------ATACCAT---------------------------------------------CAAGACCAGTSizeHit CountTotal NormTotal
No Reads
droKik1
GCAAC--AA-----------------------------------------------------------------------------------------------------------------------------------------------CACAGGCAGCAGCAGCA---------CCAGCAGTAATAG---CAGC------------------AG------C---------------AGTAGCAACAACAACAACAACAACAACAGCA-------------------------------------GCAGCA---------GC-AGCAGTAGCA------G-----------------------------CG------GCAGCAACAATA---ACACACCC-AACGGTGC------------GCAGCAG---------------------------------------------CAGCATTTGCSizeHit CountTotal NormTotal
No Reads
droFic1
GACAA--C-----TTATTGGCAACACACACGAAACTT-GT-TGCGTTGG-------------------------------------------------------------------------------------CAACAA---C---AAC---------AG------------CA---------GCAACAACAAC---AA---------------CAGCAGCAACAACAACAGCAAC---AACAACAA---------------------CAGCAACAGCAGC---AAACAC-------------ATCGCAGACGGAGGCAGCAAC-AACAACAGCA------A--------------------ACACAGCTGCA---------------------------ACAATAGCAAAC--------ATAGGAGCAA---------------------------------------------CACTATCAAASizeHit CountTotal NormTotal
No Reads
droEle1
CAAAG--T-----GGCTTT-----------------------TT-------------------------------------------------------------------AATG--------------CACAGCAGGAG---C---AACGACAGGAT---------CAAC------------AGGA------------G---CAGTCACTGCAGCAGGAGCAGC---------------AGTAGCAGCAGCAACAACGT---------AA-------------------------------------TCTACG---------ACCAGAAACAGAA------G---CAACA-----------GTTAAAGTAACA------AAAGTAGTGGCA--------------------------------ACACTAT---------------------------------------------TAACACCAGCSizeHit CountTotal NormTotal
No Reads
droRho1
TGATG--T-----TTACCA------------CAC-------------------------------GC-------------TGGGGCAGAA-----G---AACACGCAGGCTGAG-----------------------------G---AAC---------AGCAGCAGCA---------------GCAACTG---GAAA------------------AGCAGCAGC---------------AACAACAAAT------GCAG---------CAGCA------ATATCAGGAGC-------------A---GCAGCA---------AC-AACAGCAGCA------G--------------------CTATATCAACAACAACAGCAATATCAGAT--------------------------------GCAACTG---------------------------------------------GAAAAGCAACSizeHit CountTotal NormTotal
No Reads
droBia1
GTGAA--------GTATCCCTAAAGCGCTCAAAGCAACAG-------------------------------------------------------------------------------------------------------T---GACAGCAGCAA---------CAACAGCA---------GCAACAGCAAT---AG---------------CAGCAGCATCAG---------CAGCAGCAGCAACA------ACAA---------CAGCAACAGCAAT---AGTA-------------------ATAGCA---------GC-AGCAGCAGCA------G---CAGCA-----------GCAACAGCAGCA------GCAGCAGCAACA--------------------------------GCAGCAA---------------------------------------------CAACAGCAACSizeHit CountTotal NormTotal
No Reads
droTak1
AAATT--GA-----------------------AT------------------------------------------------------------------------------TGGAGTTCCATCAG-----------------------------------------------CAGCAGCAA------------CAGC------------------AGGAGCAACTG---------C---AGCAGCAGCAACA---ACAA---------CAGCT----------------------------------AC----------------AGCAGC---------AGCAACAGCA-----------GGAATTGCTGCT------ACAGCAGCAACAGCAGCTGCAACATCAGCCATTAGCG-CCGCTGCAAATTG---------------------------------------------AAAAACCGCCSizeHit CountTotal NormTotal
No Reads
droEug1
TGCTC--AGATCA--------------ACGGCAG------------------------------------------------------------------------------CGGAGTTGCAACTGCAGCACCGCAACAG---C------------------------------AACAGCAGCAGCTATCG---C------AGC------------AG------C---------------AGCAGCAACAGCAACAGTTG---------------------C----------------AATTACAGCAGCAACA---------GC-AGCAGCAGCT------A---CAACA-----------GCAACAGCAGCT------ACAGCAGCAGCA--------------------------------ACTTCAG---------------------------------------------CAGCAACAGCSizeHit CountTotal NormTotal
No Reads
dm3
TGCTC--AGATCA--------------ACGGCAG------------------------------------------------------------------------------CGGAGTTGCAACTGCAGCACCGCAGCAG---C---AAC---------AG------------CAGCAGCAGCAACAGT---------------------------------------------------TGCAGCAATC------ACAG---------CA-------------------------------------ACAACA---------GC-AGCAGCAGCT------A---CAGCA-----------GCAACAGCAGCA------GCAGCAACAACA--------------------------------ACAGCAG---------------------------------------------CAGCAGCAACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................CAG---------CA-------------------------------------ACAACA---------GC-AGCAGCAG........................................................................................................................................................21201.3527000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000003000000000000000001000001000001000000000000000200000000
.......AGATCA--------------ACGGCAG------------------------------------------------------------------------------CGGAGTTG..............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................AGT---------------------------------------------------TGCAGCAATC------ACAG---------CA-------------------------------------A.................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................AGTTGCAACTGCAGCACCGC...............................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGCTC--AGATCA--------------ACGGCAG------------------------------------------------------------------------------CGG...................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GATCA--------------ACGGCAG------------------------------------------------------------------------------CGGAGTTGC.............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..........................................................................................................................ACTGCAGCACCGCAGCAG---C---AAC---------AG------------CAGC.....................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GATCA--------------ACGGCAG------------------------------------------------------------------------------CGGAGTTG..............................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................GTTGCAACTGCAGCACCGCAGCAG---.......................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................TC------ACAG---------CA-------------------------------------ACAACA---------GC-AGCAGC..........................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................GCAACAACA--------------------------------ACAGCAG---------------------------------------------CAGC......20200.951900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000190000000000000000000000000000
.........................................................................................................................................CAG---C---AAC---------AG------------CAGCAGCAGCA..............................................................................................................................................................................................................................................................................................................20200.65130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000400000000000000000000000000000000000000000000000000000400
.......................................................................................................................................................................................................................................................................................................................ACA---------GC-AGCAGCAGCT------A---CAGC........................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACA--------------------------------ACAGCAG---------------------------------------------CAGCAGCA..25200.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACA--------------------------------ACAGCAG---------------------------------------------CA........19200.3570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
GGTAA--C-----GTACGCCCAAAATATCCGTAGCGG-AGTGGGCGTGGCGA---CCAAGGGCGGTACACCCATACCCAT----------------------------------------------------------------------------------------------AAG------TG---------------------------------GAGCCAA--------AATTGT-TGTAG--GCAATA---ATAA---------AATCA------AGC--CAATATCGTTGT--------------------------------------------------TG-C-----------GCATCAACAACA------ATAACAACAATA--------------------------------TAGTCAC---------------------------------------------CAGCATTAACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................AT----------------------------------------------------------------------------------------------AAG------TG---------------------------------GAGCCAA--------AATTGT-T.....................................................................................................................................................................................................................................................2111.00100000000000100000
...............................TAGCGG-AGTGGGCGTGGCGA---CCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
..............................................................................AT----------------------------------------------------------------------------------------------AAG------TG---------------------------------GAGCCAA--------AATTGT-TGTAG--GC.............................................................................................................................................................................................................................................2711.00100010000000000000
..........................................................................................................................................................................................................................................................................................C--CAATATCGTTGT--------------------------------------------------TG-C-----------GCATCAACA...................................................................................................................2511.00100000001000000000
....................CAAAATATCCGTAGCGG-AGTGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
...........................................................................................................................................................................................................................................................TA---ATAA---------AATCA------AGC--CAATATCGTTG..............................................................................................................................................................................................2511.00100000001000000000
droSec2
GCTGG--G---------------------------------------------------------------------------------------------C---------ATGA--------------CCCAGCAGCTG---C---AAC---------AG------------CAACAGCAGCAGCAGGTG---C------------AAC------AG------C---------------AACAACATCAGCACCAGCAC---------------------C----------------A---------GGTGCA---------AC-AGCAACAGCA------G---CATCA-----------GCAGCAGCAGCA------GCAGCAACAGCA--------------------------------ACAACAA---------------------------------------------CAACAACAGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................................................................................................................................................................................................CAACAGCA------G---CATCA-----------GCAGCAGCAGC.................................................................................................................2540.2511000
......................................................................................................................................................................................................................................................................................................................................AGCAACAGCA------G---CATCA-----------GCA.........................................................................................................................1970.1410010
.............................................................................................................................................................................................................................................................................................................................................GCA------G---CATCA-----------GCAGCAGCAGCA------GC........................................................................................................23100.1010010
.........................................................................................................................................................................................................................................................................................................................................AACAGCA------G---CATCA-----------GCAGCA......................................................................................................................19140.0710001
...........................................................................................................................................................................................................................................................................................................................................................ATCA-----------GCAGCAGCAGCA------GCAGCA....................................................................................................22200.0510001
..........................................................................................................................................................................................................................................................................................................................................................CATCA-----------GCAGCAGCAGCA------GCA.......................................................................................................20200.0510001
...............................................................................................................................................................................................................................................................................................................................................................................AGCAGCA------GCAGCAACAGCA--------------------------------..............................................................19200.0510001
................................................................................................................................................................................................................................................................................................................................................................................GCAGCA------GCAGCAACAGCA--------------------------------ACA...........................................................21200.0510010
droYak3
TGCCC--GAATC------------------GCAC------------------------------------------------------------------------------CAGAATCACAACAGCAACAT-GCAACAC---------------------------------------------C------------------------------AGCAGCAGC---------------AGCAGCAACAGCAACAGCAA---------CAC------TACT-------------------------------A---------CC-AGCAACAGC------AGCAACAGCAGGTTGCCCACAATCATAGCCATC---------------ATC---ACATGACT-ACCGCTTA------------CTACCAA---------------------------------------------CAGCAGCAACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................C-AGCAACAGC------AGCAACAGCA.......................................................................................................................................20200.05100100000000
............................................................................................................................................................................................................................GCAGC---------------AGCAGCAACAGCAAC.......................................................................................................................................................................................................................................20200.05101000000000
droEre2
CAATG--T-----TG-----------------------TGTTGTGCTTG----------------------------------------------------------------------------------CACCAACAC---C---AACAGCAACAC---------CAACAGCAACAA---------CAA---CACC------------------AA---CAGCAA---------CACCAACAGCAACAGCAACACCAA---------CA-------------------------------------GCAACA---------CC-AACAGCAACA------C---CAACA-----------GCTACACCAACA------GCAACACCAACA--------------------------------GCAACAC---------------------------------------------CAACAGCAACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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Generated: 05/18/2015 at 02:35 AM