ID:

dwi_1834

 Coordinate:

scf2_1100000004590:3310127-3310277 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dwil\GK16155-cds]; exon [dwil_GLEANR_16540:2]; intron [Dwil\GK16155-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCTAGCAATTTCAGTTCGATACAGACACTGAAAGCGTAAACAACAGTCTAAACAACAAAAACTAAGAATAACTTCCGTTTTTTATATAATTTTAGACACACAAAATGTTTAAAATTTTAGGTAAATTTTGCGCAACTTTCTATTATTGGGTAAGTAGAAAAAAAACGTTCTTAATTTATTATTATATTTATTATTATTTAGATCGTCAATTTTGTAAACATTTTCAATGTTGGTTTCGGCGGCGAAAGTAT
**************************************************......((((((...(((....))).))))))..((.(((((((((((.......))))))))))).)).(((((((..(((....((((((((........)))))))).....)))....)))))))......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V117
male body		 M045
female body
................CGATACAGACACTGAAAGCGTAAA................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0
...........................................................GACTAAGCGTAACTTCCGT............................................................................................................................................................................. 19 3 10 0.30 3 0 3
......................................................................................................................................................................................................................................TGGTTCCGGCGGCTAAAGG.. 19 3 14 0.07 1 0 1

Anti-sense strand reads

GGATCGTTAAAGTCAAGCTATGTCTGTGACTTTCGCATTTGTTGTCAGATTTGTTGTTTTTGATTCTTATTGAAGGCAAAAAATATATTAAAATCTGTGTGTTTTACAAATTTTAAAATCCATTTAAAACGCGTTGAAAGATAATAACCCATTCATCTTTTTTTTGCAAGAATTAAATAATAATATAAATAATAATAAATCTAGCAGTTAAAACATTTGTAAAAGTTACAACCAAAGCCGCCGCTTTCATA
**************************************************......((((((...(((....))).))))))..((.(((((((((((.......))))))))))).)).(((((((..(((....((((((((........)))))))).....)))....)))))))......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
............................................................................................................................................................................................ATAATAATAAATCTATGAGT........................................... 20 2 8 0.13 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004590:3310077-3310327 - dwi_1834 CCTAGCAATTTCAGTTCGATACAGACACTGAAAGCGTAAACAACAGTCTAAACAACAAAAACTAAGAATAACTTCCGTTTTTTATATAATTTTAGACACACAAAATGTTTAAAATTTTAGGTAAATTTTGCGCAACTTTCTATTATTGGGTAAGTAGAAAAAAAACGTTCTTAATTTATTATTATATTTATTATTATTTAGATCGTCAATTTTGTAAACATTTTCAATGTTGGTTTCGGCGGCGAAAGTAT
droTak1 scf7180000415381:707236-707278 + -------------------------------------------------AAATAATTAAAAAAAAACATGATTCCCGTGTTTTATATAACTT---------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CCTAGCAATTTCAGTTCGATACAGACACTGAAAGCGTAAACAACAGTCTAAACAACAAAAACTAAGAATAACTTCCGTTTTTTATATAATTTTAGACACACAAAATGTTTAAAATTTTAGGTAAATTTTGCGCAACTTTCTATTATTGGGTAAGTAGAAAAAAAACGTTCTTAATTTATTATTATATTTATTATTATTTAGATCGTCAATTTTGTAAACATTTTCAATGTTGGTTTCGGCGGCGAAAGTATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................CGATACAGACACTGAAAGCGTAAA...................................................................................................................................................................................................................2411.00100100
droTak1
-------------------------------------------------AAATAATTAAAAAAAAACATGATTCCCGTGTTTTATATAACTT---------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 02:33 AM