ID:

dwi_1827

 Coordinate:

scf2_1100000004590:3104969-3105119 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.4 -18.2 -18.1

Flybase annnotation

exon [dwil_GLEANR_16823:2]; CDS [Dwil\GK16458-cds]; intron [Dwil\GK16458-in]

Repeatable elements

NameClassFamilyStrand
ISFUN1RCHelitron+
mature
  1. scf2_1100000013831:833-859 +
  2. scf2_1100000003943:358-384 +
  3. scf2_1100000004516:2834092-2834118 +
  4. scf2_1100000004521:2108880-2108906 +
  5. scf2_1100000004521:8305554-8305580 +
  6. scf2_1100000004575:13899-13925 +
  7. scf2_1100000004884:162101-162127 +
  8. scf2_1100000004888:409658-409684 +
  9. scf2_1100000004888:799555-799581 +
  10. scf2_1100000004888:817849-817875 +
  11. scf2_1100000004888:820425-820451 +
  12. scf2_1100000004943:15605649-15605675 +
  13. scf2_1100000004949:155896-155922 +
  14. scf2_1100000004949:192288-192314 +
  15. scf2_1100000004949:440854-440880 +
  16. scf2_1100000004949:1843401-1843427 +
  17. scf2_1100000004958:1974454-1974480 +
  18. scf2_1100000004963:3399667-3399693 +
  19. scf2_1100000004963:3434010-3434036 +
  20. scf2_1100000000439:2765-2791 +
  21. scf2_1100000013581:1077-1103 +
  22. scf2_1100000005939:319-345 +
  23. scf2_1100000002004:2041-2067 +
  24. scf2_1100000004511:4456332-4456358 +
  25. scf2_1100000004511:4771346-4771372 +
  26. scf2_1100000004521:5171612-5171638 +
  27. scf2_1100000004590:373829-373855 +
  28. dwi_1827  scf2_1100000004590:3105084-3105110 +
  29. scf2_1100000004854:109736-109762 +
  30. scf2_1100000004943:492565-492591 +
  31. scf2_1100000004943:497127-497153 +
  32. scf2_1100000004943:13119446-13119472 +
  33. scf2_1100000004902:6506678-6506704 +
  34. scf2_1100000004909:903729-903755 +
  35. scf2_1100000004936:770239-770265 +
  36. scf2_1100000004949:804556-804582 +
  37. scf2_1100000004953:1453516-1453542 +
  38. scf2_1100000004963:2057883-2057909 +
  39. scf2_1100000004968:2638707-2638733 +
  40. scf2_1100000004969:192355-192381 +
  41. scf2_1100000010688:355-381 +
  42. scf2_1100000002969:4249-4275 +
  43. scf2_1100000008379:1378-1404 +
  44. scf2_1100000003426:2444-2470 +
  45. scf2_1100000002421:5636-5662 +
  46. scf2_1100000004511:7938217-7938243 +
  47. scf2_1100000004521:11016585-11016611 +
  48. scf2_1100000004529:37115-37141 +
  49. scf2_1100000004615:68029-68055 +
  50. scf2_1100000004626:19777-19803 +
  51. scf2_1100000004762:1747272-1747298 +
  52. scf2_1100000004822:1188806-1188832 +
  53. scf2_1100000004822:2321276-2321302 +
  54. scf2_1100000014861:845-871 +
  55. scf2_1100000004943:5277354-5277380 +
  56. scf2_1100000004937:104171-104197 +
  57. scf2_1100000004949:515811-515837 +
  58. scf2_1100000004949:670663-670689 +
  59. scf2_1100000004956:751487-751513 +
  60. scf2_1100000004963:3382043-3382069 +
star
  1. scf2_1100000013581:1026-1050 +
  2. scf2_1100000005939:268-292 +
  3. scf2_1100000006164:789-813 +
  4. scf2_1100000004511:4456281-4456305 +
  5. scf2_1100000004511:4771295-4771319 +
  6. scf2_1100000004521:5171561-5171585 +
  7. scf2_1100000004540:2318001-2318025 +
  8. scf2_1100000004555:12552-12576 +
  9. scf2_1100000004590:373778-373802 +
  10. dwi_1827  scf2_1100000004590:3105033-3105057 +
  11. scf2_1100000004854:109685-109709 +
  12. scf2_1100000004883:159151-159175 +
  13. scf2_1100000004945:649199-649223 +
  14. scf2_1100000004909:3671305-3671329 +
  15. scf2_1100000004949:804505-804529 +
  16. scf2_1100000004949:1974776-1974800 +
  17. scf2_1100000004953:1453465-1453489 +
  18. scf2_1100000004953:1497565-1497589 +
  19. scf2_1100000004963:2057832-2057856 +
  20. scf2_1100000004968:2638656-2638680 +
  21. scf2_1100000002004:1990-2014 +
  22. scf2_1100000004515:1805187-1805211 +
  23. scf2_1100000004521:11343255-11343279 +
  24. scf2_1100000004540:131476-131500 +
  25. scf2_1100000004762:99401-99425 +
  26. scf2_1100000004943:3493984-3494008 +
  27. scf2_1100000004943:3956862-3956886 +
  28. scf2_1100000004943:13119395-13119419 +
  29. scf2_1100000004909:8858821-8858845 +
  30. scf2_1100000004936:770188-770212 +
  31. scf2_1100000004954:4326458-4326482 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GTCACTCCAGTGACGGATAAGAACGGACACCTTCTGCCCACAGCACGTCGGTAAGTATATCCATTTTGTTTCGACGGAGGATACCTAACACGTTCTTATAATCGGTTTATATAGTTTTTATACCATACACCCATAGGGTGAAATGGTATATTAAAGTCGCCAAAATGTATGTAACAGGCAGAAGGAAGCATCTCCAACCCCACAAAGTATAGGATCAACAACCGAGTCGATCTAGTCATGTCCGTCTGTCC
******************************************************************************************************************((..((((((((.(((((...)))))..))))))))..))..(((((....(((.....)))))).))..........*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
 V119
head
 M020
head
 V117
male body
...............GATAAGAACGGTCACGTT.......................................................................................................................................................................................................................... 18 2 2 1.00 2 0 0 2 0 0
.....................................................................................................................................................................TGTATGTAACAGGCAGAAGGAAGCATC........................................................... 27 0 20 0.85 17 17 0 0 0 0
......................................................................................................................................................................................................................TCAACAACCGAGTCGATCTAGTCATG........... 26 0 15 0.33 5 2 3 0 0 0
........................................................................................................GTTTATATAGTTTAAATACCA.............................................................................................................................. 21 2 9 0.33 3 0 3 0 0 0
.........................................................TATCCATTTAGTTTCGACC............................................................................................................................................................................... 19 2 3 0.33 1 0 1 0 0 0
............................................................................................................................................................................AACAGGCAGAAGGAAGCATCTCC........................................................ 23 0 20 0.30 6 6 0 0 0 0
..................................................................................................................TTTTTATACCATACACCCATAGGGT................................................................................................................ 25 0 20 0.30 6 3 3 0 0 0
.....................................................................................................................................................................................................................ATCAACAACCGAGTCGATCTA................. 21 0 20 0.20 4 4 0 0 0 0
...............................................................................................................................................................CCAAAATGTATGTAACAGGCAGAAGG.................................................................. 26 0 20 0.15 3 0 3 0 0 0
..........................................................................................................................................TGAAATGGTATATTAAAGTCGCC.......................................................................................... 23 0 20 0.15 3 0 3 0 0 0
.......................................................TATATGCATTTAGTTTCGACC............................................................................................................................................................................... 21 3 12 0.08 1 0 0 0 1 0
........................................................................................................................................................................................................................AACAACCGAGTCGATCTAGTCATGTCCG....... 28 0 14 0.07 1 1 0 0 0 0
.....................................................................................................................................................................................AAGGAAGCATCTCCAACCCCA................................................. 21 0 16 0.06 1 0 1 0 0 0
...........................................................................................................................................................................................................................AACCGAGTCGATCTAGTCATG........... 21 0 16 0.06 1 0 0 0 1 0
..................................................................TGTTTCGACCGTGGATGCC...................................................................................................................................................................... 19 3 18 0.06 1 0 0 0 1 0
.......................................................................................................................................................................................................................CAACAACCGACTCGATCTAGTCATG........... 25 1 19 0.05 1 0 1 0 0 0
...........................................................................................................................................................................TAACAGGCAGAAGGAAGCATCCCCAA...................................................... 26 1 19 0.05 1 0 1 0 0 0
..............................................................................................................................................................................................................................CGAGTCGATCTAGTCATGTCC........ 21 0 19 0.05 1 0 0 0 0 1
...............................................................................................................................................................................................................................GAGTCGATCTAGTCATGTCCG....... 21 0 20 0.05 1 0 1 0 0 0
..................................................................................................................................................................................................................................TCGATCTAGTCATGTCCGT...... 19 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................................AAAGTATCGGATCCACAAG............................. 19 3 20 0.05 1 0 0 0 1 0
...........................................................................................................................................................................TAACAGGCAGAAGGAAGCATCTCTAGT..................................................... 27 3 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

CAGTGAGGTCACTGCCTATTCTTGCCTGTGGAAGACGGGTGTCGTGCAGCCATTCATATAGGTAAAACAAAGCTGCCTCCTATGGATTGTGCAAGAATATTAGCCAAATATATCAAAAATATGGTATGTGGGTATCCCACTTTACCATATAATTTCAGCGGTTTTACATACATTGTCCGTCTTCCTTCGTAGAGGTTGGGGTGTTTCATATCCTAGTTGTTGGCTCAGCTAGATCAGTACAGGCAGACAGG
***********************************************************((..((((((((.(((((...)))))..))))))))..))..(((((....(((.....)))))).))..........****************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body
......................................................CATACAGGTAAAACAAAGC.................................................................................................................................................................................. 19 1 1 1.00 1 1 0 0
.........................................................................................................................................................................................................................TGTTGGCTCAGCTAGATCAGTACAG......... 25 0 14 0.29 4 1 3 0
......................................................................................................................................................................................................................AGTTGTTGGCTCAGCTAGATCAGT............. 24 0 15 0.20 3 0 3 0
............................................................................................................................................................................................................................TGGCTCAGCTAGATCAGTACAGGCAG..... 26 0 15 0.13 2 0 2 0
.....................................................................................................................................................................................................................TAGTTGTTGGCTCAGCTAGATCAGT............. 25 0 15 0.13 2 0 2 0
.........................................................................................................................................................................................................................TGTTGGCTCAGCTAGATCAGTACAGG........ 26 0 14 0.07 1 1 0 0
.........................................................................................................................................................................................................................TGTTGGCCCAGCTAGATCAGTACAG......... 25 1 15 0.07 1 0 1 0
....................................................................................................................................................................................CTTCCTTCGTAGAGGTTGGGGTGTT.............................................. 25 0 16 0.06 1 0 1 0
....................................................................................................................................................................................................................................CTAGATCAGTACAGGCAGACAGG 23 0 16 0.06 1 0 0 1
.....................................................................................................................................................................................................................TAGTTGTTGGCTCAGCTAGATCA............... 23 0 17 0.06 1 0 1 0
.........................................................................................................................................................................................................................TGTTGGCTCAGCTAGACCAGTACAG......... 25 1 19 0.05 1 0 1 0
......................................................................................................................................................................................................................AGTTGTTGGCTCAACTAGATCAGT............. 24 1 20 0.05 1 0 1 0
..............................................................................................................................................................................................................................GCTCAGCTAGATCAGTACAGGCAT..... 24 1 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004590:3104919-3105169 + dwi_1827 GTC-AC--------TCCA------------------------------GTGACGG---------------------------------------------------------------------------------------------------------ATAAGAACGGA-----------------------------------------------CACCTTC-TGCCCACAGCACGTCGGTAAGTA------------------------------------------------------------------------TATCCA---T----------------------------------------TTTGTTTCGACGGA-----------------------------------------------------------------------------GGATA-CCTAA-CACGTT-----------------CTTATAATC--------------------G----GTT-------------T--ATATAGT-------TTTTATACCATACACCCAT-------AGGGTGAAATGGTATATTAAAGTCGCCAAAA-------TGTATGTAACAGGCAGAAGGAAGCATCTCCAACCCCACAAAGTAT-------------------AGGATCAACAACCGAGTCGATCTAGT-----CATGTCCGTCTGTCC
droVir3 scaffold_12723:1106028-1106290 + CAA-AC--------AA------------------------------AAACTAAAAACTTATG---------------------------------------------------------ACA------------------------------------------------------------------------------------------------------------CATAATACGTTGCTATCAG------------------------------------------------------------------------TGTTCA---TTTTAT------------------TGACAGTT--------TGCAGCTCTGG---------------------------------------------------------------------------------------------CGCATACATATAA---------------TATACTTTTT--------------------------TGC------------CTCT-------TTTTATTCCCTGAACTCAATGAAAATGGGTAAAAAGGGTATATTGTATTTGTGCAAA-------TATATGTAACAGGCAAAAGGAAGCATCTCCGTCCCAATGAAGTATATATAT-----TTTTGATTAGCAGCAAAAGCCGAGTCGATCTAGC-----CATGTCCGCCTGGCT
droMoj3 scaffold_6498:2463886-2464137 - ATAT-GTA---------------------------------------------------------------------------------------------------------------------------------------------------------------CATA-----------------------------------------------TAACATC-TGCATATAG---------------------------ACGCTGTAA---------------------------------------------AATTATAACAT---T----------------------------------------TTTGTAATTACGAAGTTT----ACA--------TACTC--------------------------------------------------------------AA-C---------------------------------------------------GCTGTG----AATAGTC----T-----TATT-------TTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATAATGGTTTTGTTGAAA-------TGTATGTAACAGGCAGAAGGAGGCGTGGCAGACCCCACAAAGTATATATAT-----TCTTGATCAGGGCGACGAGCTGAGTCGATTTGGC-----CCTGTCCGTCTGTCT
droGri2 scaffold_15203:4402766-4402970 + GCAT-GGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTAAGTAAATCTGCATACCTACCTGGTACACATTGCCAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGC----AATAA------------ATAT-------GTTTATACACTGAAAGCGTTAAAAATATGTCAAAAGGGAAAAATGGTTTTATGCAAA-------TGCATGTAAGAGGCAGACGGAAGCATCTCCCATCCCA-------------------------TCAGGATCAGCTGACGAGTCGATATTGCATTGCATTGTCTGTCTGTTC
dp5 XL_group1e:1439031-1439268 - GGCT-G--------TTAAGC-------------------------------GCG-------------------------------------------------------------------------------------------------------------------GA-----------------------------------------------TCCCTTC-CGCCCAAC---------------------------CGACCGAGTTGCGCTGC--------------------------------------------------------------------------------CGCA----------------TGACGCA-----------------------------------------------------------------------------CGACA-CCTTAA---------------------------------------------------------------------AAATT-----GTAT-------TTTTATACCCGATACTCAA----AAT-GAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATAT-----TCTTGATCAGCATCAATAGCCGAGTCGATTGAGC-----CATGTCTGTCTGTCC
droPer2 scaffold_622:486-769 - ATC-AT--------TTGA------------------------------GTAGAGTAATGAT-------------------AAGTATGTCCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTCCACAACCAACTTGTTAGTTCCATAACCAA-----------TTCCTTGC----------------------------------------------------TCCGGTTA--AACCTGGATTC----------------------------------TTTTGTTAGTTTTATGTTTG----GT--------------------TC-------------T-----TCTT-------TTTTATACCCGACACTCAA----AAT-GAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGTATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCTTATAAAGTATATATAT-----TCTTGATCAGCATCAATAGCCGAGTCGATTGAGC-----CCTGTCTGTCTGTCC
droAna3 scaffold_13337:10982122-10982370 - GTT-AC--------CC-A------------------------------TTCACGG---------------------------------------------------------------------------------------------------------GT-------AAACAAAGCCACTTTCTGCACCCTACTTTGAAGGGTATTATTCGGTTTTTACTTTC-C------------------------------------TATTTCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAAGAATAAGGTTTCTAA---------------------------------------------------------------------A---T-----ACCT-------TTTTATACCCTT-----GC-------------AGAGGGTATTATAATTTTGGTCAAA-------AGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATAT-----TCTTGATCAGGATCACCTCCTGAGTCGATATGAG-----CATGTCCGTCTGTCC
droBip1 scf7180000395008:21014-21255 + GCT-AC--------A---------------------------------ATAGCAC---------------------------------------------------------------------------------------------------------ATAATAATTAA-----------------------------------------------AA---------------------------------------------------------------------------------------------------------------------------------------------T--------TGCAATTCTGCCAAA---------------------------------ATAAAACCAAGATTTCGCATA--AACTTTGGGTA----------------------------------TGTGACTATATTTAATTATC----TT--------------------TA-------------T-----ATAT-------ATTTATACCCTT-----TC-------------AGAGGGTAATATAATTTTGGTCAAA-------AGTGTGCAACGCAGTGAAGGAGACATCTCTGACCCTATAACGTATATATAT-----TCTTGATCAGGATCACCTCCTGAGTTGATATGAG-----CGTGTCCGTCTGTCT
droKik1 scf7180000302447:5527-5800 + ATGC-C--------TCCA------------------------------G-GAGG-------------------------------------------------------------------------------------------------------------------AATCCAGGC-------------------------------------AAACACCTTC-GTCTTGGAGC--------------------------------------------------------------------------------------------------------------------------AGCT---------------------------CGAAACCAGAATAAATAGTCTATATTTTATTTAAACCAAATTATTATATAGTATGTATAAATA----------------------------------TACAACTTTTATAAAATTTC----C-----------------------------------TT-----TTAT-------TTTTATACCCTT-----GC---------------AGGGTTTTACAATTTTAGTCAGA-------AGTTTGCAACTCAGTAAAGGAGACCTTTCCGACCCTATAAAATATATATTT-----TCTTGATCAGCATCAACAGCCAAGTCAATCTAGC-----CATGTCCGTCTGTCC
droFic1 scf7180000454146:27629-27849 + CCC-AT-----------A------------------------------GCACTTCATTCACTACAAAATCGTCTT------------------------------CTTT-TGATTT---------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCAACAGTTTC----AATAATG---CTCAAGATGCT-------TTTTATACCCTT-----GC-------AGAGCAAAAGGGTATTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATATAT-----TCTTGATCAGCATCACCATCTGAATCGAAATATG-----TATGTACGTCTGTCC
droEle1 scf7180000491347:438708-438954 + GGAT-CGGAATGCGCCAAGTGCTGCTCTTATTGCGTCGTTTAATGGAG---------------------------------------------------------TTTT-TAGTTT---------ATTTTGTTGGGACTTAGCTGAGTACTCATAAATAGGT-------AAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTG---GT-----CAAT-------TTTTATACCCTT-----TC-------------AGAGGTTATTATAATTTTAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATAT-----TCTTGATCAGCATCACTAGGCGAGTCGATCTAGC-----CATGTCCGTCTGTCC
droRho1 scf7180000775660:18649-18891 + CAGT-GA--------------------------------------------------TGACTATAAAGTGATACCCTTCCAAGTACATCCTCATTTTCTGGATGCCCCAGTGGATTGCCA-------------------------------------------------------GGC-------------------------------------ATTCTTTTTCAGTCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----GAGT-------AGTTATACCCGTTACTCGT-------AGAGTAAAAGGGTATATTGTATTCGTGCAAA-------AGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATAT-----TCTTGATCAGGGTCAGTAGCCGAGTCGATATAGC-----CATGTCCGTCTGTTC
droBia1 scf7180000297098:4068-4289 + ATAC-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC-TCCCTACGAGACTTCTTTACATG------------------------------------------------------------------------TTTTTG---C----------------------------------------TT-----TTG-----------------------------------------------------------------------ATTCGAAGAATAAAA-TCCTGT---------------------------------------------------------------------ATATT--ATATAAT-------TTTTATACCCGTAACTCGT-------AGAGTGAAAGGGTATACTAGATTCGTCGGAA-------AGTATGCAACAGGTAAAAGGAAGCGTTTCCGACCCCATAAAGTATATATAC-----TCTTGATCAGGATCACTAGCCGAGTCGATCTAGC-----CATGTCTGTCT----
droTak1 scf7180000415877:16728-16993 + GCC-AT--------TTTA------------------------------GTAACACATAAATGACGTAAAAGTCTA------------------------------CTGT-T----------------------GATAGAAAATTGGGT-------------------------------------------------------------------ACGCACATAC-C------------------------------------TCTTGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTAAAACCGCTTTTTTAATG----GTTTATACAAAGAAAA---TCCATAT-------TTTTATACCCGTTACTCGT-------AGAGTAAAAGGGTATATTAGATTCGTGCAAA-------AGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATATAT-----TCTTGATCAGGGGCACTAGCCGAGTCGATCTAGC-----CATGTCCGTCT----
droEug1 scf7180000409717:50161-50408 + GTCT-G--------CCAAATAAGACT--------------------------------------------------------------------------------------------------------------------------------------------------TTTGGC-------------------------------------TT----------TCGCATTGTTAATCAATCTGTATTTTTCG------------TCCCCTTTGGCAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------GCTTCTTGAATTTG----AATGC------------GTCCCTCCATTTTTTATACCCGTTACTCGT-------AGAGTA-AAGGGTATACTAGATTCGTTGAAA-------TTTATGTTACAGATAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATAT-----TCTCGATCAGGATCAATAGCGAGGTCGATTGAGC-----CATGTCCGTCCGTCC
dm3 chrYHet:203116-203344 + GAT-AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCC-TGCCTAACGATTGTCGGTCTGTAAGTCTTT------------ATTCTGTAGGCAATAAACACTGACTTGTTGTTATTATTTCACTCCAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCTCGTTACTCGT-------AGAGTAAAAGGTTATACTAGATTCGTTGAAA-------AGTATGTAACAGGCAGAATGAAGCGTTACAGATCATATAAAGTGAATATAT-----TCTTAATCAGGATCAATAGCCGAGTCGATCTGGC-----CATGTGCGT------
droSim2 2r:683111-683322 + ATC-GA--------T---------------------------------GTTGTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------T---ACTCGCGTCATCCAA-----------------CAGCT--------TTTAGACCAG---------------------------------------------------------------------------------------------------------------------------------------------------ACTGG----AATAG------------GTTT-------AGTTATACCCGTTACTCGT-------AGAGTAAAAGGGTATAATAGATT-GTTGAAA-------AGTATGTAACAGGCACAAGGAAGCGTTTCGAACTATA-AAAATATATATATTCTATTCTTGATCAGGATGAATAGCCGAGTCGATCAAGA-----CATGTCCGTCTGTCC
droSec2 scaffold_55:52868-53094 + CACT-T--------------CCCGCCCATTCTGC-ACATGAAATGGATAC-------------------------------------------------------TATT-TAGATTGCCAAACATATC---TAGTTACTAAGCTGGGTGTACATATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------A-------------T-----TAAT-------TTTTATACTC-------GT-------AG----GAAGGGTATACTAGATTCTTTGAAA-------AGTATGTAACAGACAGAAGGAAGCGTTTCCGACTATATA-AGTATATATAT-----TCTTGATCAGGACCAATAGCCGAATCGATCTGGC-----CATGTCCGACTGTCC
droYak3 2L:21919422-21919673 - CTCT-AA------------------------------------TGAAA------T---------------------------------------------------------------------------------------------------------TTACGAACTTT-----------------------------------------------TACTATT-TTCCCC--------------------------------------------------------------------------------CAGAAAGTATATTC-------------------------------------------------TACTTGCGAAGTGTGGGGGCC--------TACTC--------------------------------------------------------------AA-TGTTTC-----------------TTTGTTATG------------TTTTT----------------AATG---TT-----TAAT-------TTTTATACCCGTTACTCGT-------AGAGTAAAAGGGTATACTAAATTCGTTGAAA-------AGTATGTAACAGGCAGAAGGAAGCGCTTCCGACCATATAAAGTATATATAT-----TCTTGATCAGG------AGCCGAGTCGATCTGGT-----CATGTCCGTCTGTCC
droEre2 scaffold_4784:25127150-25127392 + ACT-AT-----------A------------------------------GTAACTC---------------------------------------------------------------------------------------------------------ATAGGATCCAA-----------------------------------------------CGCGTTC-TGATCTCATC----------------------------------------GCC---------------------------------CAGGA--------------------------------------------TTAGAGTGGTGTAATTTTGACGTA---------------------------------A-------------------------------------------CAGAGTTCCTAG---------------------------------------------------------------------ATTT------TCTA-------TATTTTACCCGTAACTCGT-------AGAGTAAAGGGGTATACTAGATTCGTTGAAA-------AGTATGTAGCAGACAGAATAAAGCATTTCCGACCCCATATAAAGTATATAT-----GTATATTCATGATCAATAGCCGAGTCGATTTGGT-----CAATTCCGTCTGTC-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
GTC-AC--------TCCA------------------------------GTGACGG---------------------------------------------------------------------------------------------------------ATAAGAACGGA-----------------------------------------------CACCTTC-TGCCCACAGCACGTCGGTAAGTA------------------------------------------------------------------------TATCCA---T----------------------------------------TTTGTTTCGACGGA-----------------------------------------------------------------------------GGATA-CCTAA-CACGTT-----------------CTTATAATC--------------------G----GTT-------------T--ATATAGT-------TTTTATACCATACACCCAT-------AGGGTGAAATGGTATATTAAAGTCGCCAAAA-------TGTATGTAACAGGCAGAAGGAAGCATCTCCAACCCCACAAAGTAT-------------------AGGATCAACAACCGAGTCGATCTAGT-----CATGTCCGTCTGTCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTAACAGGCAGAAGGAAGCATC...................................................................................27200.8517000170
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAACCGAGTCGATCTAGT-----CATG...........26150.33503020
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGGCAGAAGGAAGCATCTCC................................................................................23200.30600060
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------TTTTATACCATACACCCAT-------AGGGT...............................................................................................................................................25200.30603030
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAACCGAGTCGATCTA......................21200.20400040
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAA-------TGTATGTAACAGGCAGAAGG..........................................................................................26200.15303000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATGGTATATTAAAGTCGCC.........................................................................................................................23200.15303000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACCGAGTCGATCTAGT-----CATGTCCG.......28140.07100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAAGCATCTCCAACCCCA.........................................................................21160.06101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGAGTCGATCTAGT-----CATG...........21160.06110000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGT-----CATGTCC........21190.05100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTAGT-----CATGTCCG.......21200.05101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATCTAGT-----CATGTCCGT......19200.05100010
droVir3
CAA-AC--------AA------------------------------AAACTAAAAACTTATG---------------------------------------------------------ACA------------------------------------------------------------------------------------------------------------CATAATACGTTGCTATCAG------------------------------------------------------------------------TGTTCA---TTTTAT------------------TGACAGTT--------TGCAGCTCTGG---------------------------------------------------------------------------------------------CGCATACATATAA---------------TATACTTTTT--------------------------TGC------------CTCT-------TTTTATTCCCTGAACTCAATGAAAATGGGTAAAAAGGGTATATTGTATTTGTGCAAA-------TATATGTAACAGGCAAAAGGAAGCATCTCCGTCCCAATGAAGTATATATAT-----TTTTGATTAGCAGCAAAAGCCGAGTCGATCTAGC-----CATGTCCGCCTGGCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAAATGGGTAAAAAGGGTATATT..................................................................................................................................2620.501000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAATGAAAATGGGTAAAAAGGG........................................................................................................................................2520.501000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTAACAGGCAAAAGGAAGCA.....................................................................................2430.331000000001000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAAAAGGAAGCATCTCCGT..............................................................................2640.251000000000000000000000000000000100000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAAAAGGAAGCATC...................................................................................25200.153000000000000000000000000100200000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAGGCAAAAGGAAGCATCTCC................................................................................24200.153000000000000000000000000100110000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAAATGGGTAAAAAGGGTATC....................................................................................................................................2470.141001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAAATGGGTAAAAAGGGT.......................................................................................................................................2180.131000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGTATATTGTATTTGTG.........................................................................................................................21200.102000000000000000000002000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATCTAGC-----CATGTCCGC......21200.102000000000000000000000000001001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAAAAGGAAGCATCTCC................................................................................26200.102000000000000000000000000000100000010000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGTAAAAAGGGTATATT..................................................................................................................................18200.102000000002000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGC-----CA.............18200.102000000002000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGGTATATTGTATTTGTGCA.......................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATCTAGC-----CATGTCCG.......24200.051000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAAAAGGAAGCATCTC.................................................................................26200.051000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAAGGGTATATTGTATTTGT..........................................................................................................................24200.051000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGTAAAAAGGGTATATTGTAT..............................................................................................................................24200.051000000000000000000000000010000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGCAAAAGGAAGCATC...................................................................................22200.051000000000000000000000000000000000000000100000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAAAAGGAAGCATC...................................................................................24200.051000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGCAAAAGGAAGCATCT..................................................................................20200.051000000000000000000000000000000000000001000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACAGGCAAAAGGAAGCATCTCC................................................................................27200.051000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGCAAAAGGAAGCATCTCC................................................................................25200.051000000000000000000000000000000000000000100000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGGTAAAAAGGGTATATTG.................................................................................................................................24200.051000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGC-----CATGTCCG.......22200.051000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAAAAGGAAGCATCTCCG...............................................................................21200.051000000000000000000000001000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGGGTAAAAAGGGTATATTGT................................................................................................................................25200.051000000000001000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTCGATCTAGC-----CATGTCCGC......23200.051010000000000000000000000000000000000000000000000000000000000000
droMoj3
ATAT-GTA---------------------------------------------------------------------------------------------------------------------------------------------------------------CATA-----------------------------------------------TAACATC-TGCATATAG---------------------------ACGCTGTAA---------------------------------------------AATTATAACAT---T----------------------------------------TTTGTAATTACGAAGTTT----ACA--------TACTC--------------------------------------------------------------AA-C---------------------------------------------------GCTGTG----AATAGTC----T-----TATT-------TTTTATACCCTGAACCCATTGAAAATGGGAAATCAGGGTATAATGGTTTTGTTGAAA-------TGTATGTAACAGGCAGAAGGAGGCGTGGCAGACCCCACAAAGTATATATAT-----TCTTGATCAGGGCGACGAGCTGAGTCGATTTGGC-----CCTGTCCGTCTGTCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATAT-----TCTTGATCAGGGC.........................................21200.95191900000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAA-------TGTATGTAACAGGCAGAAG...........................................................................................23200.102200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGAAA-------TGTATGTAACAGGC................................................................................................23200.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTGAGTCGATTTGGC-----CCTG...........22200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGGGCGACGAGCTGAGTCGATT........................28200.051100000
droGri2
GCAT-GGA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTAAGTAAATCTGCATACCTACCTGGTACACATTGCCAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTGC----AATAA------------ATAT-------GTTTATACACTGAAAGCGTTAAAAATATGTCAAAAGGGAAAAATGGTTTTATGCAAA-------TGCATGTAAGAGGCAGACGGAAGCATCTCCCATCCCA-------------------------TCAGGATCAGCTGACGAGTCGATATTGCATTGCATTGTCTGTCTGTTCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
GGCT-G--------TTAAGC-------------------------------GCG-------------------------------------------------------------------------------------------------------------------GA-----------------------------------------------TCCCTTC-CGCCCAAC---------------------------CGACCGAGTTGCGCTGC--------------------------------------------------------------------------------CGCA----------------TGACGCA-----------------------------------------------------------------------------CGACA-CCTTAA---------------------------------------------------------------------AAATT-----GTAT-------TTTTATACCCGATACTCAA----AAT-GAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGGATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCCCATAAAGTATATATAT-----TCTTGATCAGCATCAATAGCCGAGTCGATTGAGC-----CATGTCTGTCTGTCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAG..............................22202.855700000057000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGTCCAGAAGGAATCGT....................................................................................21201.252502500000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAA----AAT-GAGTATTGGGGTATAT...................................................................................................................................23200.801601600000000
..............................................................................................................................................................................................................................................................................TGCGCTGC--------------------------------------------------------------------------------CGCA----------------TGACGCA-----------------------------------------------------------------------------CG..................................................................................................................................................................................................................................................................................2120.5010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTC............................24200.2550000005000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTTCCGACCCCATAAAG....................................................................21200.2040400000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCAA----AAT-GAGTATTGGGGT.......................................................................................................................................21200.1530030000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAATAGCCGAGTCGAT.........................27200.1530030000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTAGATTTGTGGTAAAAGTGGATG............................................................................................................26200.1530000000300
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-----TCTTGATCAGCATCAATAGCCGAGT.............................28200.1020200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT-----TCTTGATCAGCATCAATAGC..................................23200.1020000000020
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGAAGGAATCGTTTCCG...............................................................................19200.1020200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCAA----AAT-GAGTATTGGGGTA......................................................................................................................................23200.1020200000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATATAT-----TCTTGATCAGCAT.........................................21200.1020000000200
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAGAAGGAATCGTTTCC................................................................................20200.1020200000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATTGAGC-----CATGTCTGT......24200.0511000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATTGAGC-----CATGT..........18200.0510100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGC-----CATGTCTGTCTGTCC21200.0510010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGAGTCGATTGAGC-----CATGTCTGTCTG...28200.0510100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTTCCGACCCCATAAAGTATAT...............................................................25200.0510010000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC-----CATGTCTGTCTGTCC18200.0510001000000
droPer2
ATC-AT--------TTGA------------------------------GTAGAGTAATGAT-------------------AAGTATGTCCAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTCCACAACCAACTTGTTAGTTCCATAACCAA-----------TTCCTTGC----------------------------------------------------TCCGGTTA--AACCTGGATTC----------------------------------TTTTGTTAGTTTTATGTTTG----GT--------------------TC-------------T-----TCTT-------TTTTATACCCGACACTCAA----AAT-GAGTATTGGGGTATATTAGATTTGTGGTAAAAGTGTATGTGTGTAACGTCCAGAAGGAATCGTTTCCGACCTTATAAAGTATATATAT-----TCTTGATCAGCATCAATAGCCGAGTCGATTGAGC-----CCTGTCTGTCTGTCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-GAGTATTGGGGTATATTAG................................................................................................................................21200.204000004
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGATTC----------------------------------TTTTGTTAGTTTTATGTT..........................................................................................................................................................................................................................................2570.141010000
droAna3
GTT-AC--------CC-A------------------------------TTCACGG---------------------------------------------------------------------------------------------------------GT-------AAACAAAGCCACTTTCTGCACCCTACTTTGAAGGGTATTATTCGGTTTTTACTTTC-C------------------------------------TATTTCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAAAGAATAAGGTTTCTAA---------------------------------------------------------------------A---T-----ACCT-------TTTTATACCCTT-----GC-------------AGAGGGTATTATAATTTTGGTCAAA-------AGTGTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATAT-----TCTTGATCAGGATCACCTCCTGAGTCGATATGAG-----CATGTCCGTCTGTCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------------------A---T-----ACCT-------TTTTATACCCTT-----GC-------------AGA...........................................................................................................................................2420.501000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGTCAAA-------AGTGTGCAACG...................................................................................................22200.204000040
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTTTGGTCAAA-------AGTGTG........................................................................................................19200.153000030
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCACCTCCTGAGTCGA..........................28200.102200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTCAAA-------AGTGTGCAACGCAGTGAA............................................................................................26200.102020000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCT-------TTTTATACCCTT-----GC-------------AGAGGGT.......................................................................................................................................25200.051010000
droBip1
GCT-AC--------A---------------------------------ATAGCAC---------------------------------------------------------------------------------------------------------ATAATAATTAA-----------------------------------------------AA---------------------------------------------------------------------------------------------------------------------------------------------T--------TGCAATTCTGCCAAA---------------------------------ATAAAACCAAGATTTCGCATA--AACTTTGGGTA----------------------------------TGTGACTATATTTAATTATC----TT--------------------TA-------------T-----ATAT-------ATTTATACCCTT-----TC-------------AGAGGGTAATATAATTTTGGTCAAA-------AGTGTGCAACGCAGTGAAGGAGACATCTCTGACCCTATAACGTATATATAT-----TCTTGATCAGGATCACCTCCTGAGTTGATATGAG-----CGTGTCCGTCTGTCTSizeHit CountTotal NormTotal
No Reads
droKik1
ATGC-C--------TCCA------------------------------G-GAGG-------------------------------------------------------------------------------------------------------------------AATCCAGGC-------------------------------------AAACACCTTC-GTCTTGGAGC--------------------------------------------------------------------------------------------------------------------------AGCT---------------------------CGAAACCAGAATAAATAGTCTATATTTTATTTAAACCAAATTATTATATAGTATGTATAAATA----------------------------------TACAACTTTTATAAAATTTC----C-----------------------------------TT-----TTAT-------TTTTATACCCTT-----GC---------------AGGGTTTTACAATTTTAGTCAGA-------AGTTTGCAACTCAGTAAAGGAGACCTTTCCGACCCTATAAAATATATATTT-----TCTTGATCAGCATCAACAGCCAAGTCAATCTAGC-----CATGTCCGTCTGTCCSizeHit CountTotal NormTotal
No Reads
droFic1
CCC-AT-----------A------------------------------GCACTTCATTCACTACAAAATCGTCTT------------------------------CTTT-TGATTT---------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTCAACAGTTTC----AATAATG---CTCAAGATGCT-------TTTTATACCCTT-----GC-------AGAGCAAAAGGGTATTATAATTTCAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACACCTCAGACCCCATAAAGTATATATAT-----TCTTGATCAGCATCACCATCTGAATCGAAATATG-----TATGTACGTCTGTCCSizeHit CountTotal NormTotal
No Reads
droEle1
GGAT-CGGAATGCGCCAAGTGCTGCTCTTATTGCGTCGTTTAATGGAG---------------------------------------------------------TTTT-TAGTTT---------ATTTTGTTGGGACTTAGCTGAGTACTCATAAATAGGT-------AAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTG---GT-----CAAT-------TTTTATACCCTT-----TC-------------AGAGGTTATTATAATTTTAGTCAGA-------AGTTTGCAACGCAGTGAAGGAGACATCTCCGACCCTATAAAGTATATATAT-----TCTTGATCAGCATCACTAGGCGAGTCGATCTAGC-----CATGTCCGTCTGTCCSizeHit CountTotal NormTotal
No Reads
droRho1
CAGT-GA--------------------------------------------------TGACTATAAAGTGATACCCTTCCAAGTACATCCTCATTTTCTGGATGCCCCAGTGGATTGCCA-------------------------------------------------------GGC-------------------------------------ATTCTTTTTCAGTCGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----GAGT-------AGTTATACCCGTTACTCGT-------AGAGTAAAAGGGTATATTGTATTCGTGCAAA-------AGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATAT-----TCTTGATCAGGGTCAGTAGCCGAGTCGATATAGC-----CATGTCCGTCTGTTCSizeHit CountTotal NormTotal
No Reads
droBia1
ATAC-T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC-TCCCTACGAGACTTCTTTACATG------------------------------------------------------------------------TTTTTG---C----------------------------------------TT-----TTG-----------------------------------------------------------------------ATTCGAAGAATAAAA-TCCTGT---------------------------------------------------------------------ATATT--ATATAAT-------TTTTATACCCGTAACTCGT-------AGAGTGAAAGGGTATACTAGATTCGTCGGAA-------AGTATGCAACAGGTAAAAGGAAGCGTTTCCGACCCCATAAAGTATATATAC-----TCTTGATCAGGATCACTAGCCGAGTCGATCTAGC-----CATGTCTGTCT----SizeHit CountTotal NormTotal
No Reads
droTak1
GCC-AT--------TTTA------------------------------GTAACACATAAATGACGTAAAAGTCTA------------------------------CTGT-T----------------------GATAGAAAATTGGGT-------------------------------------------------------------------ACGCACATAC-C------------------------------------TCTTGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTAAAACCGCTTTTTTAATG----GTTTATACAAAGAAAA---TCCATAT-------TTTTATACCCGTTACTCGT-------AGAGTAAAAGGGTATATTAGATTCGTGCAAA-------AGTATGTAACAGCTAGAAGGAAGCGTTTCCGACCCCATAAAGTATATATAT-----TCTTGATCAGGGGCACTAGCCGAGTCGATCTAGC-----CATGTCCGTCT----SizeHit CountTotal NormTotal
No Reads
droEug1
GTCT-G--------CCAAATAAGACT--------------------------------------------------------------------------------------------------------------------------------------------------TTTGGC-------------------------------------TT----------TCGCATTGTTAATCAATCTGTATTTTTCG------------TCCCCTTTGGCAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-------------------------------------GCTTCTTGAATTTG----AATGC------------GTCCCTCCATTTTTTATACCCGTTACTCGT-------AGAGTA-AAGGGTATACTAGATTCGTTGAAA-------TTTATGTTACAGATAGAAGGAAGCGTTTCCGACCCTATAAAGTATATATAT-----TCTCGATCAGGATCAATAGCGAGGTCGATTGAGC-----CATGTCCGTCCGTCCSizeHit CountTotal NormTotal
No Reads
dm3
GAT-AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCC-TGCCTAACGATTGTCGGTCTGTAAGTCTTT------------ATTCTGTAGGCAATAAACACTGACTTGTTGTTATTATTTCACTCCAGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATTCTCGTTACTCGT-------AGAGTAAAAGGTTATACTAGATTCGTTGAAA-------AGTATGTAACAGGCAGAATGAAGCGTTACAGATCATATAAAGTGAATATAT-----TCTTAATCAGGATCAATAGCCGAGTCGATCTGGC-----CATGTGCGT------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCAGGATCAATAGCC.................................18110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCAGGATCAATAGCCGAGTCGAA.........................27140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTACTCGT-------AGAGTAAAT...........................................................................................................................................20150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGTTGAAA-------AGTATGTAACAGGCA...............................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAA-------AGTATGTAACAGG.................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTGGC-----CATGT..........18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTC............................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATAGCCGAGTCGATCTGGC-----CATG...........25200.0510000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTCGTTGAAA-------AGTATGT.......................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAAC....................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGATCAATAGCCGAG..............................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTCGATCTGGC-----CATGT..........20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGATCAATAGCCGAGTCGATCTG......................25200.0510000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATTCGTTGAAA-------AGTATGTAAC....................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCGA..........................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTTGAAA-------AGTATGTAACAG..................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCGATCTGG.....................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAA............................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACTAGATTCGTTGAAA-------AGTATGTA......................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACAG..................................................................................................22200.0510000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATCAATAGCCGAGTCGATCTG......................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAGGCAGA.............................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAGATTCGTTGAAA-------AGTATGTAACA...................................................................................................28200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATAGCCGAGTCGATCTGGC-----CAT............26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGTTGAAA-------AGTATGTAACA...................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAATAGCCGAGTCGATCT.......................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGATTCGTTGAAA-------AG............................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAGATTCGTTGAAA-------AGT...........................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATC-GA--------T---------------------------------GTTGTTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------------------------------------------T---ACTCGCGTCATCCAA-----------------CAGCT--------TTTAGACCAG---------------------------------------------------------------------------------------------------------------------------------------------------ACTGG----AATAG------------GTTT-------AGTTATACCCGTTACTCGT-------AGAGTAAAAGGGTATAATAGATT-GTTGAAA-------AGTATGTAACAGGCACAAGGAAGCGTTTCGAACTATA-AAAATATATATATTCTATTCTTGATCAGGATGAATAGCCGAGTCGATCAAGA-----CATGTCCGTCTGTCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAATAGCCGAGTCGATC........................1930.67200000000002000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATAGCCGAGTCGATCAAGA-----CATG...........2520.50100000000100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAGGCACAAGGA.........................................................................................2420.50100000001000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGATGAATAGCCGAGTCGATCAA......................2620.50100000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATAGATT-GTTGAAA-------AA............................................................................................................1830.33100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT-------AGAGTAAAAGGGTA......................................................................................................................................18200.30600000000006000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCTTGATCAGGATGAA......................................1780.13100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-GTTGAAA-------AGTATGTAACAGGCA...............................................................................................24100.10100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAAAGGGTATAATAGATT-............................................................................................................................20100.10100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-GTTGAAA-------AGTATGTAACAGGC................................................................................................23100.10100000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGCCGAGTCGATC........................15200.10200000000002000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTCGT-------AGAGTAAAAGGGT.......................................................................................................................................21200.10200000000002000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGCCGAGTCGATCA.......................17160.06100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA-------AGTATGTAACAGGCA...............................................................................................18200.05100000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT-------AGAGTAAAAGGGTATA....................................................................................................................................20200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGT-------AGAGTAAAAGGGT.......................................................................................................................................17200.05100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCGT-------AGAGTAAAA...........................................................................................................................................16200.05100000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATACCCGTTACTCGT-------AGAGTAAAAG..........................................................................................................................................26200.05100000001000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATACCCGTTACTCGT-------AGAGTAAAA...........................................................................................................................................26200.05100000000100000000
droSec2
CACT-T--------------CCCGCCCATTCTGC-ACATGAAATGGATAC-------------------------------------------------------TATT-TAGATTGCCAAACATATC---TAGTTACTAAGCTGGGTGTACATATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------------------------------------------A-------------T-----TAAT-------TTTTATACTC-------GT-------AG----GAAGGGTATACTAGATTCTTTGAAA-------AGTATGTAACAGACAGAAGGAAGCGTTTCCGACTATATA-AGTATATATAT-----TCTTGATCAGGACCAATAGCCGAATCGATCTGGC-----CATGTCCGACTGTCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCTTTGAAA-------AGT...........................................................................................................2180.2520101
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATAT-----TCTTGATCAGGACCAT......................................2650.2010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACAGAAGGAAGCGTTTCCG...............................................................................2160.1710100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATATATAT-----TCTTGATCAGGA..........................................22200.0511000
droYak3
CTCT-AA------------------------------------TGAAA------T---------------------------------------------------------------------------------------------------------TTACGAACTTT-----------------------------------------------TACTATT-TTCCCC--------------------------------------------------------------------------------CAGAAAGTATATTC-------------------------------------------------TACTTGCGAAGTGTGGGGGCC--------TACTC--------------------------------------------------------------AA-TGTTTC-----------------TTTGTTATG------------TTTTT----------------AATG---TT-----TAAT-------TTTTATACCCGTTACTCGT-------AGAGTAAAAGGGTATACTAAATTCGTTGAAA-------AGTATGTAACAGGCAGAAGGAAGCGCTTCCGACCATATAAAGTATATATAT-----TCTTGATCAGG------AGCCGAGTCGATCTGGT-----CATGTCCGTCTGTCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGTAACAGGCAGAAGGAAGCGC....................................................................................24130.15200200000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGAAGCGCTTCCGA..............................................................................27100.10101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-------AGTATGTAACAGGCAGAAGGAAGCGC....................................................................................28110.09100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATGTAACAGGCAGAAGGAAGCGC....................................................................................25130.08100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGCTTCC................................................................................26130.08100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCGCTTCCGACCAT..........................................................................25150.07100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGC....................................................................................22160.06100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------TTTTATACCCGTTACTCGT-------AGAGTAA.............................................................................................................................................27200.05100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGATCTGGT-----CATGTCC........19200.05101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCGATCTGGT-----CATGTCCGTCTGT..26200.05101000000000
droEre2
ACT-AT-----------A------------------------------GTAACTC---------------------------------------------------------------------------------------------------------ATAGGATCCAA-----------------------------------------------CGCGTTC-TGATCTCATC----------------------------------------GCC---------------------------------CAGGA--------------------------------------------TTAGAGTGGTGTAATTTTGACGTA---------------------------------A-------------------------------------------CAGAGTTCCTAG---------------------------------------------------------------------ATTT------TCTA-------TATTTTACCCGTAACTCGT-------AGAGTAAAGGGGTATACTAGATTCGTTGAAA-------AGTATGTAGCAGACAGAATAAAGCATTTCCGACCCCATATAAAGTATATAT-----GTATATTCATGATCAATAGCCGAGTCGATTTGGT-----CAATTCCGTCTGTC-SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGGGTATACTAGATTCGTT.........................................................................................................................22180.0610001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTAGATTCGTTGAAA-------..............................................................................................................18200.0510000010

Generated: 05/18/2015 at 02:36 AM