ID:

dwi_1826

 Coordinate:

scf2_1100000004590:3071023-3071173 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-22.9 -22.9 -22.9

Flybase annnotation

exon [dwil_GLEANR_16815:1]; CDS [Dwil\GK16450-cds]; intron [Dwil\GK16450-in]

No Repeatable elements found

mature
  1. scf2_1100000003207:960-982 +
  2. scf2_1100000004389:14492-14514 -
  3. dwi_1826  scf2_1100000004590:3071024-3071046 +
  4. scf2_1100000004884:328864-328886 -
  5. scf2_1100000004909:11127338-11127360 +
  6. scf2_1100000004920:51034-51056 -
  7. scf2_1100000004949:849502-849524 +
  8. scf2_1100000004949:923909-923931 -
  9. scf2_1100000004963:1829774-1829796 +
star

Sense Strand Reads

---------------------------------------------#####---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AATATATGTATCTTGATAATGAGCATAACTATAATTTTAATAAAAATGAAGTAAGTAAGTCGTCTCGCCGACTCACCCTATGGGTGTATGGTATAAAAATTGAATTTAAAAGCCTTAAATCGAAATATTAAGCAAAAATCGGTAAAAGTTTGTGAAAGTTACAGATTCGCACATTTAGAAGTTTTTCAAATTACATTTTTGTTAATTGAGTTTTGTTAATTTGCTCAGACTGTAAATGTATGTTTATTAAG
**************************************************.......(((((......)))))(((((...))))).......(((((((..(((((((((((.....(((((...............)))))...(((((((((...))))))))).............)))))).)))))..)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
...................................................TAAGTAAGTCGTCTCGCCGACTC................................................................................................................................................................................. 23 0 9 0.11 1 1 0
..............................ATAATTTTAATGAAAAGGAAGC....................................................................................................................................................................................................... 22 3 20 0.05 1 0 1
...................................................................................................................................GCAGAATTCGGTAAACGTT..................................................................................................... 19 3 20 0.05 1 1 0
........................................TAAAAATGAAGTAAGTAAGTCGTC........................................................................................................................................................................................... 24 0 20 0.05 1 1 0

Anti-sense strand reads

TTATATACATAGAACTATTACTCGTATTGATATTAAAATTATTTTTACTTCATTCATTCAGCAGAGCGGCTGAGTGGGATACCCACATACCATATTTTTAACTTAAATTTTCGGAATTTAGCTTTATAATTCGTTTTTAGCCATTTTCAAACACTTTCAATGTCTAAGCGTGTAAATCTTCAAAAAGTTTAATGTAAAAACAATTAACTCAAAACAATTAAACGAGTCTGACATTTACATACAAATAATTC
**************************************************.......(((((......)))))(((((...))))).......(((((((..(((((((((((.....(((((...............)))))...(((((((((...))))))))).............)))))).)))))..)))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 V119
head
 M020
head
.........................................................................................................................................................................................................................TGAAACGAGTCTGACAGTTA.............. 20 2 1 2.00 2 1 1 0 0
.........................................................................................................................................................................................................................TGAAACGAGTCTGACAGTTAC............. 21 2 1 1.00 1 1 0 0 0
............................................................................................................................TATAACTCGTTATTAGCCAT........................................................................................................... 20 2 1 1.00 1 0 0 1 0
.........................................................................................................................................................................................................................TGAAACGAGTCTGACAGT................ 18 2 8 0.13 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004590:3070973-3071223 + dwi_1826 AATATATGTATCTTGATAATGAGCATAACTATAATTTTAATAAAAATGAAGTAAGTAAGTCGTCTCGCCGACTCACCCTATGGGTGTATGGTATAAAAATTGAATTTAAAAGCCTTAAATCGAAATATTAAGCAAAAATCGGTAAAAGTTTGTGAAAGTTACAGATTCGCACATTTAGAAGTTTTTCAAATTACATTTTTGTTAATTGAGTTTTGTTAATTTGCTCAGACTGTAAATGTATGTTTATTAAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AATATATGTATCTTGATAATGAGCATAACTATAATTTTAATAAAAATGAAGTAAGTAAGTCGTCTCGCCGACTCACCCTATGGGTGTATGGTATAAAAATTGAATTTAAAAGCCTTAAATCGAAATATTAAGCAAAAATCGGTAAAAGTTTGTGAAAGTTACAGATTCGCACATTTAGAAGTTTTTCAAATTACATTTTTGTTAATTGAGTTTTGTTAATTTGCTCAGACTGTAAATGTATGTTTATTAAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................TAAGTAAGTCGTCTCGCCGACTC.................................................................................................................................................................................2390.11101000
........................................TAAAAATGAAGTAAGTAAGTCGTC...........................................................................................................................................................................................24200.05101000

Generated: 05/18/2015 at 02:33 AM