ID:

dwi_1825

 Coordinate:

scf2_1100000004590:2985406-2985556 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dwil\GK16445-cds]; exon [dwil_GLEANR_16810:6]; intron [Dwil\GK16445-in]

Repeatable elements

NameClassFamilyStrand
T-richLow_complexityLow_complexity+
(TA)nSimple_repeatSimple_repeat+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTTTTGTTCATGTATCTAATTGCATTCATCTCTCTCTCTTTTCTTCCTTTTTTTTCTTATTTTTTTATTTTTGTTTCGTTATGCCGTTTTATTTTGTTTTTTTCTATTTTTTCCCTTGACATCATGTTTTGTTTTTGGTTCTCCTTCATATGCTCCATTGCAAATCTATCCTATATATATATATATGTATATATATATAGCTATAACAAGCGCGAGGAGGCACAGGAGGCCATTTCGGCATTGAACAATG
**************************************************...............................................................((...((((........))))...))............(((......)))........(((((((((((((....)))))))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
 V117
male body
......................................................................................................................................................................................................................GAGGAGGCACAGGAGGCCATTTCGGCAT......... 28 0 1 1.00 1 1 0 0
.............................................................................................................................................................................................................................CCCAGGAGGCCATTTCGGCGCT........ 22 3 2 0.50 1 0 1 0
......................................................................................................................................................................................................................GATCAGGCACAGGAGGCTAT................. 20 3 5 0.20 1 0 0 1
.......................................................................................................................................................................................................................................CATTTCGGCGCTGAACAAC. 19 3 20 0.05 1 0 1 0

Anti-sense strand reads

AAAAAACAAGTACATAGATTAACGTAAGTAGAGAGAGAGAAAAGAAGGAAAAAAAAGAATAAAAAAATAAAAACAAAGCAATACGGCAAAATAAAACAAAAAAAGATAAAAAAGGGAACTGTAGTACAAAACAAAAACCAAGAGGAAGTATACGAGGTAACGTTTAGATAGGATATATATATATATACATATATATATATCGATATTGTTCGCGCTCCTCCGTGTCCTCCGGTAAAGCCGTAACTTGTTAC
**************************************************...............................................................((...((((........))))...))............(((......)))........(((((((((((((....)))))))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V117
male body		 M045
female body
 V118
embryo
 V119
head
.............................AGAGAGAGAGAAAAGAAG............................................................................................................................................................................................................ 18 0 7 2.86 20 14 3 2 1
...............................................GAAAAAAAAGAATAAAAAAA........................................................................................................................................................................................ 20 0 6 0.17 1 0 1 0 0
..........................................AGAAAGAAAAAAAAGAATAAAA........................................................................................................................................................................................... 22 1 13 0.08 1 0 0 1 0
....................................................................AAAAACAAAACAATGCGGCCAA................................................................................................................................................................. 22 3 13 0.08 1 0 0 1 0
.............................AGAGAGAGAGAAAAGAAGC........................................................................................................................................................................................................... 19 1 16 0.06 1 1 0 0 0
...................................................................................................................................................GGATTCGAGGTAACGTTTG..................................................................................... 19 3 20 0.05 1 0 1 0 0
.........................................................................................................................................................................AGGATATATATATACATGCATA............................................................ 22 2 20 0.05 1 0 0 1 0
..........................................AGAAGGAAACAAAAGAATTA............................................................................................................................................................................................. 20 2 20 0.05 1 0 1 0 0
..............................GATAGAGAGAAATGAAGGA.......................................................................................................................................................................................................... 19 2 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004590:2985356-2985606 + dwi_1825 TTTTTTG--------TT---CAT--------------------------------------------GTATCTAAT--------------TGCATTCAT------------------------------------------------------------------CTCTCTCTCTTTTCTTCCTT------TT------------------TTT-TCT-------T---------------------------------------------------------------------------AT-------------------TTTTTTATTTTTGTTTCGTTATGCCGTT------------------------------------------TTATTTTGTTTTTTTCTATTTTTTCCCTTGACATCATGTT---------TTGTTTTTGGTTC---------------------------------------------------TC--CTT-----------------------CATA-TGCTCCATT------GCAAATCTATCCTAT-----------------ATATATATATATG--TA--T--AT---------------------------------A--TATATAGCTATAACAAGCGCGAGGAGGCACAGGAGGCCATTTCGGCATTGAACAATG
droVir3 scaffold_12928:59371-59561 - TTTTTCT--------TT---CAT--------------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTCATTATGTTT--T-------------------------TTTTTTTTTTGTTTA-------TA--------------------------------------------------------------------------------------------------------------------------------------TA---------------T--TT------G----TTTTTT------------------TTTTTA--TGTTATTTTTTTT-----------GGTAAATCGATTCGCATCGCAAACAAAT-----CATCAAAATCAAATCAACAACA--------------AC--A--AC---------------------------------A--AAAACAGCTACAACAAACGCGAGGAGGCACAGGAGGCAATCTCGGCGCTGAACAACG
droMoj3 scaffold_6359:1379665-1379887 - AATAATG--------TT---CTC--------------------------------------------GCATCCAATCAACACTTTCCATTCTAAT-CAT------------------------------------------------------------------CTG-------------------------TT--------------------------------------------------------TTT--GT---------------------------TTTTTTTTTTTTTTTT-------CATTTTTTTTTTATTT----------------------------------------------------TC----------------------------------------------------------ATATTTCACA---------------T--TT------G----TCTATTCC---TA----C-----T--------------------------------------------------------------------------------------AAATATATATGTG--T--ATATATATCGAAATCGTTATCGATATCTGCGATGCATC-A--TCTATAGCTATAATAAACGCGAGGAGGCACAGGAGGCTATCTCGGCGCTGAACAATG
droGri2 scaffold_14853:6691802-6692053 - TGAATCG--------AT---GAT--------------------------------------------AAACCAAAA--------------CAAAT-TAT------------------------------------------------------------------ACA-----CACTTGCCTCAC------TCCACT------------------------------------------------------------------------CCT------------------------------C-------------------ATCTCCACATCTCAACCACCTCTCACATTAAATCATGCATTTCTCTTCTCACTTTTACGCCACGCCACGCCCACACCGTGCCACACCACTT-------------------------------CA---CTTCGATCATCAT--CC------A----TCCA-----------------------A------------CCA----------------TAC------------------------------------------------AAACATACATGCG--T--ACATAA---------------------------------A--AAAACAGCTATAACAAACGCGAGGAGGCACAGGAGGCAATCTCGGCGCTGAACAATG
dp5 XL_group1a:6390645-6390864 - CTGTTGG--------TT---TTT--------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------TT-TTCGAAA--GCGTTCTCATTGT-TGTTCTCTTTCTCTTTTCCCTTTCTTATGTTTTCTTT---------ATCCACACACTT---------------------------------------------------------------TT---------------------------------------------------------GCCA-CGCGCA---------------TGTT--CATGCT----C------------------------------------------CCCC-----------CATATCGAACCGAA------ACGAAC-----CGCTACGATCCGATCCAT---------------GTAC--------------------------------ACCACATCAT--CATATAGCTATAACAAGCGGGAGGAGGCACAGGAGGCCATCTCGGCACTGAACAATG
droPer2 scaffold_25:932061-932281 + CTGTTGG--------TT---TTT--------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------TT-TTCGAAA--GCGTTCTCATTGT-TGTTCTCTTTCTCTTTTCCCTTTCTTATGTTTTCTTT---------TTCCACACACTT---------------------------------------------------------------TT---------------------------------------------------------GCCA-CGCGCA---------------TGTT--CATGCT----C------------------------------------------CCCC-----------CATATCGAACCGAA------CCGAACCGATCCGCTACGATCCGATCCAT---------------GTATC--A--T--------------------------------CAT--CATATAGCTATAACAAGCGGGAGGAGGCACAGGAGGCCATCTCGGCACTGAACAATG
droAna3 scaffold_13117:3893760-3893911 + TTTCTTG--------TA---AAT--------------------------------------------GAATGGTTC---------------------CT------------------------------------------------------------------GTATCTTTTTTTTGCTTGAT------TTCTTT------------------------------------------------------------------------TTT------------------------------T-------------------TTTTTTGTATATTTTCTGTTTCTTTATT------------------------------------------TAATACTTCTTTTTAATATTTTTTTTTTGAATTGTTTGTT---------GTTTCTTTGTTTG---------------------------------------------------TT--TGTCGTTTGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTT
droBip1 scf7180000396696:795900-796047 + TTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTTTCTCT-------CATTT---------------------------------------------------------------CT---------------------------------------------------------TTCA-CGATCA---------------TGTTTCTATA-T----CCATCATC---CA------------TGTTT--------------TGGTGCATCCATTATTAT------------------------------------------------AAATATA--------CA-AA--AA---------------------------------A--AAAATAGCTATAACAAGCGCGAGGAGGCACAGGAGGCCATATCGGCGCTGAACAACG
droKik1 scf7180000302230:44063-44324 + AGTAAAAG-------AG---GA-----------------------------------------------------------------------------TTCATCCCGAAGAACT-T-TGACTGAATTTTCTCTTTGACAAA----------------------TTTG------------------------ATATGAT---T-----TTTTGC-TTT-------TATT---TTTGACACTCCCGGCTCAT---ATGT---------------------------TTTCTTTCTT-TCTCT-------CACAT---------------------------------------------------------------TT---------------------------------------------------------TCCATTGCTCA---------------T--TTCTATC-GCAAACCATCA------ATGTACTTACGTACGACG--TGTGGTGTACACC----------CGATAAT------------------------------------------------TAAAATA--------AT-----AA---------------------------------CGAAATATAGCTACAACAAGCGCGAGGAGGCACAGGAAGCCATATCGGCGCTGAACAACG
droFic1 scf7180000453927:1026375-1026631 + TATTAAG--------AA---TTT----------GCAAT-----------------------TAAAAT--------------------------------TTCGACTTGCAGGACTCT-TGAATGTATTT-T-TCTTGGCCG------------------------------------------TGTTCAAATG------------------TGC-CTT-------TATTATTTTCGACA--CTCGGCTTATCACGTGT--T------------------------TTTTTTTCTTTTCTCT-------CATTT---------------------------------------------------------------TTT-----------------------------------------------TTTGTC-GTACCATCGCTCA---------------T--TC------G----CCATCT------A------------CGGTG--TGTACTTTTGATC-----------GATAAC------------------------------------------------AAAA-----------AC--A--AA---------------------------------CTGAAAACAGGTACAACAAGCGCGAGGAGGCCCAGGAGGCCATATCGGCGTTGAACAACG
droEle1 scf7180000491023:837999-838141 + C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCATGTGT--T------------------------TTTCTTTCTTTTCTCT-------CATTT---------------------------------------------------------------TT---------------------------------------------------------ACCATCGCTCA---------------T--TT------G----CCATCT------A------------CGGTG--TGTATTTTCGATC-----------GATAAA---------------------------------------------------------------TC--A--AA---------------------------------C--TATATAGGTACAACAAGCGCGAGGAGGCCCAGGAGGCCATTTCGGCCCTGAACAACG
droRho1 scf7180000779514:333150-333411 + TTGAAAAAAGTTTTAAA---AAT------GAATGCAATACTTTTAATTAAAGTTTTTTATGTAATAT--------------------------------TTCGACTTGCAGAATCAT-TGAAAGTATTT-C-ACTTGGCCAAA---------------------T--------------------------T-----------------------------------TTAT-TTTCACA--CACCGCTCATCATGTGT--T------------------------TTTCTTTCTTTTCTCT-------CATTT---------------------------------------------------------------GT---------------------------------------------------------ACCATCGCTCA---------------T--TT------G----CCATCTT------------------CGGTG--TGTATTTTCGATC-----------GATAAA---------------------------------------------------------------TC--A--AA---------------------------------C--TATACAGGTACAACAAGCGCGAGGAGGCCCAGGAGGCCATATCGGCCCTGAACAACG
droBia1 scf7180000301760:1607837-1607892 + ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTAGGTACAACAAGCGCGAGGAGGCCCAGGAGGCCATATCGGCGCTGAACAACG
droTak1 scf7180000415873:624279-624552 - TGTTTTA--------AAATATCA----------GCTAT-----------------------CATT----------------------------------ATCGACTCGAAGAACCTTTCGAATGTATC--C-TCTTGGCTCG-----------------------------------------CTTTTTATTT------------------TACCCCCTACTTTGTATTAT-TTCGACA--CCCGGCTCATCATGTGC--TT---------T-------------TTTCTTTCTTTTCTCT-------CATTTTCTTTTTT----------------------------------------------------------------------TTCTTACTGT--------------------------------GTAACATCGCTCA---T-----------T--TT------G----CCATCCTC---TA------------CGA------------CGATC-----------CA--AA-----------------------------------TCAAATGAAAA-----------------TC--A--AA---------------------------------C--TATATAGGTACAACAAGCGCGAGGAGGCCCAGGAGGCCATATCGGCGCTGAACAACG
droEug1 scf7180000409095:319985-320203 - TTAAGCT---------------------------------------------------------------------------------------------------------------------TAAC--A-TCTTGGCCAAGATTTATTAAGACGACCACGCGT--------------------------TGTATTT-----------------------------TTTT-TTGGACA--CCCGGCTCAT---GTGT--TT-------GTT-------------TTTCTTTCT-TTCTCT-------CATTT---------------------------------------------------------------GTT-----------------------------------------------------TTTCCCATCGCTCA---------------T--TT------G----CCATCC------A------------TGGTG--TGTCTTTTCGATC-----------GATAAA---------------------------------------------------------------TCAAA--AA---------------------------------C--TATACAGGTACAACAAGCGTGAGGAGGCCCAGGAGGCCATATCGGCATTGAACAACG
dm3 chrX:6978803-6979019 - TTGA---------------------------------------------------------------------------------------------------------------------ATGTATC--C-CTTTGGTCAA----------------------T--------------------------TGTATTAT---GTTTTCTTTTCC-CCT-------TATTAT-TTCGACA--CCCGGCTCATTATGTGT---------------------------TTTCTTTCTTTTCTCT-------CATTT---------------------------------------------------------------TTA-----------------------------------------------------TAAAC-----CTCA---------------T--TT------G----CCATCTACAACTA----C-----TATGGTG--TGTTATTTCGATC-----------GATAAA---------------------------------------------------------------TC--A-AAA---------------------------------C--TATGCAGGTACAACAAGCGTGAGGAGGCCCAGGAGGCCATTTCGGCGCTGAACAACG
droSim2 x:6571440-6571669 - TTGT-------------------------------------------------------------------------------------------------CGACTCGCAGAACCTC-TGAATGTATT--C-CTTTGGCCAA----------------------T--------------------------TGTATTAT---G-----TTTTCC-CCT-------TATTAT-TTCGACA--CCCGGCTCATTATG--T---------------------------TTTCTTTCTTTTCTCT-------CATTT---------------------------------------------------------------TTA-----------------------------------------------------TAAACCATCGCTCA---------------T--TT------G----CCATCATC---TA----C-----TATGGTG--TGTTATTTCGATC-----------GATAAA---------------------------------------------------------------TC--A--AA---------------------------------C--TATGCAGGTACAACAAGCGTGAGGAGGCCCAGGAGGCCATTTCGGCGCTGAACAACG
droSec2 scaffold_24:198972-199199 - GT---------------------------------------------------------------------------------------------------CGACTCGCAGAACCTT-TGAATGTATT--C-CTTTGGCCAA----------------------T--------------------------TGTATTAT---G-----TTTTCC-CCT-------TATTAT-TTCGACA--CCCGGCTCATTATG--T---------------------------TTTCTTTTTTTTCTCT-------CATTT---------------------------------------------------------------TTA-----------------------------------------------------TAAACCATCGCTCA---------------T--TT------G----CCATCATC---TA----C-----TATGGTG--TGTTATTTCGATC-----------GATAAA---------------------------------------------------------------TC--A--AA---------------------------------C--TATGCAGGTACAACAAGCGTGAGGAGGCCCAGGAGGCCATTTCGGCGCTGAACAACG
droYak3 X:14375684-14375884 + TT--------------------------------------------------------------------------------------------------------------------------------------GGCCAA----------------------T--------------------------TGTATTATTAGG-----TTTTCC-GCT-------TATTAT-TTCAACA--CCCGGCTCATTATGTGT---------------------------TTTCTTTCTTTTCTTT-------CATTT---------------------------------------------------------------TTA-----------------------------------------------------TAAACCATCGCTCA---------------T--TT------G----CCATCATC---CA------------CGGTGTGTGTTATTTCGATC-----------GATAAA---------------------------------------------------------------TC--A--AA---------------------------------C--TATACAGGTACAACAAGCGTGAGGAGGCCCAGGAGGCCATATCGGCGCTGAACAACG
droEre2 scaffold_4690:15889301-15889552 - CATTTAG--------AA---GTTGTGGAAGT---ATAG-----------------------AATT----------------------------------GGTGACTCGAATGACCAT-TGAATG------C-CTTTGGCCAA----------------------C--------------------------TGTATTAT---G-----TTTTTC-CCT-------TATTAT-TTCGACA--CCCGGCTCATTATGTGT---------------------------TTTCTTTCTTTTCTCT-------CATTT---------------------------------------------------------------TTA-----------------------------------------------------TAAACCATCGCTCA---------------T--TT------G----CCATCATC---TA----T-------CGGTG--TGTTATTTTGATC-----------GATAAA---------------------------------------------------------------TC--A--AA---------------------------------C--TATATAGGTACAACAAGCGTGAGGAGGCCCAGGAGGCCATATCGGCACTGAACAACG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TTTTTTG--------TT---CAT--------------------------------------------GTATCTAAT--------------TGCATTCAT------------------------------------------------------------------CTCTCTCTCTTTTCTTCCTT------TT------------------TTT-TCT-------T---------------------------------------------------------------------------AT-------------------TTTTTTATTTTTGTTTCGTTATGCCGTT------------------------------------------TTATTTTGTTTTTTTCTATTTTTTCCCTTGACATCATGTT---------TTGTTTTTGGTTC---------------------------------------------------TC--CTT-----------------------CATA-TGCTCCATT------GCAAATCTATCCTAT-----------------ATATATATATATG--TA--T--AT---------------------------------A--TATATAGCTATAACAAGCGCGAGGAGGCACAGGAGGCCATTTCGGCATTGAACAATGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGCACAGGAGGCCATTTCGGCAT.........2811.00100010
droVir3
TTTTTCT--------TT---CAT--------------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTCATTATGTTT--T-------------------------TTTTTTTTTTGTTTA-------TA--------------------------------------------------------------------------------------------------------------------------------------TA---------------T--TT------G----TTTTTT------------------TTTTTA--TGTTATTTTTTTT-----------GGTAAATCGATTCGCATCGCAAACAAAT-----CATCAAAATCAAATCAACAACA--------------AC--A--AC---------------------------------A--AAAACAGCTACAACAAACGCGAGGAGGCACAGGAGGCAATCTCGGCGCTGAACAACGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCGGCGCTGAACAAC.1811.001000000000000010000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAGGCAATCTCGGCGCT........2111.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCGAGGAGGCACAGGAG......................2011.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACAGGAGGCAATCTCGGCGCT........2411.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCGAGGAGGCACAGGAGGC....................2111.001000100000000000000000000000000000000000000000000000000000000000
TTTTTCT--------TT---CAT--------------------------------------------G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAACGCGAGGAGGCACAGGAGGC....................2711.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCAATCTCGGCGCTGAAC....2011.001000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACAACAAACGCGAGGAG...............................2011.001000000000000010000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGCACAGGAGGCAATC................2011.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAACGCGAGGAGGC.............................1911.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGGAGGCAATCTCGGCGC.........2011.001000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA--------------AC--A--AC---------------------------------A--AAAACAGCT................................................1940.251001000000000000000000000000000000000000000000000000000000000000
droMoj3
AATAATG--------TT---CTC--------------------------------------------GCATCCAATCAACACTTTCCATTCTAAT-CAT------------------------------------------------------------------CTG-------------------------TT--------------------------------------------------------TTT--GT---------------------------TTTTTTTTTTTTTTTT-------CATTTTTTTTTTATTT----------------------------------------------------TC----------------------------------------------------------ATATTTCACA---------------T--TT------G----TCTATTCC---TA----C-----T--------------------------------------------------------------------------------------AAATATATATGTG--T--ATATATATCGAAATCGTTATCGATATCTGCGATGCATC-A--TCTATAGCTATAATAAACGCGAGGAGGCACAGGAGGCTATCTCGGCGCTGAACAATGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCGAGGAGGCACAGGAGGCTATCTC..............2811.001000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTTATCGATATCTGCGATGCATC-............................................................2611.001000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAGGAGGCTATCTCGGCGCT........2311.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGGCACAGGAGGCTATCTCG.............2311.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCGGCGCTGAACAATG1911.001100000
droGri2
TGAATCG--------AT---GAT--------------------------------------------AAACCAAAA--------------CAAAT-TAT------------------------------------------------------------------ACA-----CACTTGCCTCAC------TCCACT------------------------------------------------------------------------CCT------------------------------C-------------------ATCTCCACATCTCAACCACCTCTCACATTAAATCATGCATTTCTCTTCTCACTTTTACGCCACGCCACGCCCACACCGTGCCACACCACTT-------------------------------CA---CTTCGATCATCAT--CC------A----TCCA-----------------------A------------CCA----------------TAC------------------------------------------------AAACATACATGCG--T--ACATAA---------------------------------A--AAAACAGCTATAACAAACGCGAGGAGGCACAGGAGGCAATCTCGGCGCTGAACAATGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
CTGTTGG--------TT---TTT--------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------TT-TTCGAAA--GCGTTCTCATTGT-TGTTCTCTTTCTCTTTTCCCTTTCTTATGTTTTCTTT---------ATCCACACACTT---------------------------------------------------------------TT---------------------------------------------------------GCCA-CGCGCA---------------TGTT--CATGCT----C------------------------------------------CCCC-----------CATATCGAACCGAA------ACGAAC-----CGCTACGATCCGATCCAT---------------GTAC--------------------------------ACCACATCAT--CATATAGCTATAACAAGCGGGAGGAGGCACAGGAGGCCATCTCGGCACTGAACAATGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACAGGAGGCCATCTCGGCA..........2212.0020200000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGAGGAGGCACAGGAGGCCATCT...............2511.0010000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGGCCATCTCGGCACTGAAC....2411.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCACAGGAGGCCATCTCGGC...........2411.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCACAGGAGGCCATCTCGGCACT........2511.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACAGGAGGCCATCTCGGCACTG.......2511.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGAGGAGGCACAGGAG......................1811.0010100000000
droPer2
CTGTTGG--------TT---TTT--------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------TT-TTCGAAA--GCGTTCTCATTGT-TGTTCTCTTTCTCTTTTCCCTTTCTTATGTTTTCTTT---------TTCCACACACTT---------------------------------------------------------------TT---------------------------------------------------------GCCA-CGCGCA---------------TGTT--CATGCT----C------------------------------------------CCCC-----------CATATCGAACCGAA------CCGAACCGATCCGCTACGATCCGATCCAT---------------GTATC--A--T--------------------------------CAT--CATATAGCTATAACAAGCGGGAGGAGGCACAGGAGGCCATCTCGGCACTGAACAATGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTCGGCACTGAACAAT.1912.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGAGGAGGCACAGGAGGCCATCTCG.............2811.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTCGGCACTGAACAAC.1911.001100000
droAna3
TTTCTTG--------TA---AAT--------------------------------------------GAATGGTTC---------------------CT------------------------------------------------------------------GTATCTTTTTTTTGCTTGAT------TTCTTT------------------------------------------------------------------------TTT------------------------------T-------------------TTTTTTGTATATTTTCTGTTTCTTTATT------------------------------------------TAATACTTCTTTTTAATATTTTTTTTTTGAATTGTTTGTT---------GTTTCTTTGTTTG---------------------------------------------------TT--TGTCGTTTGAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTTTCTCT-------CATTT---------------------------------------------------------------CT---------------------------------------------------------TTCA-CGATCA---------------TGTTTCTATA-T----CCATCATC---CA------------TGTTT--------------TGGTGCATCCATTATTAT------------------------------------------------AAATATA--------CA-AA--AA---------------------------------A--AAAATAGCTATAACAAGCGCGAGGAGGCACAGGAGGCCATATCGGCGCTGAACAACGSizeHit CountTotal NormTotal
No Reads
droKik1
AGTAAAAG-------AG---GA-----------------------------------------------------------------------------TTCATCCCGAAGAACT-T-TGACTGAATTTTCTCTTTGACAAA----------------------TTTG------------------------ATATGAT---T-----TTTTGC-TTT-------TATT---TTTGACACTCCCGGCTCAT---ATGT---------------------------TTTCTTTCTT-TCTCT-------CACAT---------------------------------------------------------------TT---------------------------------------------------------TCCATTGCTCA---------------T--TTCTATC-GCAAACCATCA------ATGTACTTACGTACGACG--TGTGGTGTACACC----------CGATAAT------------------------------------------------TAAAATA--------AT-----AA---------------------------------CGAAATATAGCTACAACAAGCGCGAGGAGGCACAGGAAGCCATATCGGCGCTGAACAACGSizeHit CountTotal NormTotal
No Reads
droFic1
TATTAAG--------AA---TTT----------GCAAT-----------------------TAAAAT--------------------------------TTCGACTTGCAGGACTCT-TGAATGTATTT-T-TCTTGGCCG------------------------------------------TGTTCAAATG------------------TGC-CTT-------TATTATTTTCGACA--CTCGGCTTATCACGTGT--T------------------------TTTTTTTCTTTTCTCT-------CATTT---------------------------------------------------------------TTT-----------------------------------------------TTTGTC-GTACCATCGCTCA---------------T--TC------G----CCATCT------A------------CGGTG--TGTACTTTTGATC-----------GATAAC------------------------------------------------AAAA-----------AC--A--AA---------------------------------CTGAAAACAGGTACAACAAGCGCGAGGAGGCCCAGGAGGCCATATCGGCGTTGAACAACGSizeHit CountTotal NormTotal
No Reads
droEle1
C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCATGTGT--T------------------------TTTCTTTCTTTTCTCT-------CATTT---------------------------------------------------------------TT---------------------------------------------------------ACCATCGCTCA---------------T--TT------G----CCATCT------A------------CGGTG--TGTATTTTCGATC-----------GATAAA---------------------------------------------------------------TC--A--AA---------------------------------C--TATATAGGTACAACAAGCGCGAGGAGGCCCAGGAGGCCATTTCGGCCCTGAACAACGSizeHit CountTotal NormTotal
No Reads
droRho1
TTGAAAAAAGTTTTAAA---AAT------GAATGCAATACTTTTAATTAAAGTTTTTTATGTAATAT--------------------------------TTCGACTTGCAGAATCAT-TGAAAGTATTT-C-ACTTGGCCAAA---------------------T--------------------------T-----------------------------------TTAT-TTTCACA--CACCGCTCATCATGTGT--T------------------------TTTCTTTCTTTTCTCT-------CATTT---------------------------------------------------------------GT---------------------------------------------------------ACCATCGCTCA---------------T--TT------G----CCATCTT------------------CGGTG--TGTATTTTCGATC-----------GATAAA---------------------------------------------------------------TC--A--AA---------------------------------C--TATACAGGTACAACAAGCGCGAGGAGGCCCAGGAGGCCATATCGGCCCTGAACAACGSizeHit CountTotal NormTotal
No Reads
droBia1
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTAGGTACAACAAGCGCGAGGAGGCCCAGGAGGCCATATCGGCGCTGAACAACGSizeHit CountTotal NormTotal
No Reads
droTak1
TGTTTTA--------AAATATCA----------GCTAT-----------------------CATT----------------------------------ATCGACTCGAAGAACCTTTCGAATGTATC--C-TCTTGGCTCG-----------------------------------------CTTTTTATTT------------------TACCCCCTACTTTGTATTAT-TTCGACA--CCCGGCTCATCATGTGC--TT---------T-------------TTTCTTTCTTTTCTCT-------CATTTTCTTTTTT----------------------------------------------------------------------TTCTTACTGT--------------------------------GTAACATCGCTCA---T-----------T--TT------G----CCATCCTC---TA------------CGA------------CGATC-----------CA--AA-----------------------------------TCAAATGAAAA-----------------TC--A--AA---------------------------------C--TATATAGGTACAACAAGCGCGAGGAGGCCCAGGAGGCCATATCGGCGCTGAACAACGSizeHit CountTotal NormTotal
No Reads
droEug1
TTAAGCT---------------------------------------------------------------------------------------------------------------------TAAC--A-TCTTGGCCAAGATTTATTAAGACGACCACGCGT--------------------------TGTATTT-----------------------------TTTT-TTGGACA--CCCGGCTCAT---GTGT--TT-------GTT-------------TTTCTTTCT-TTCTCT-------CATTT---------------------------------------------------------------GTT-----------------------------------------------------TTTCCCATCGCTCA---------------T--TT------G----CCATCC------A------------TGGTG--TGTCTTTTCGATC-----------GATAAA---------------------------------------------------------------TCAAA--AA---------------------------------C--TATACAGGTACAACAAGCGTGAGGAGGCCCAGGAGGCCATATCGGCATTGAACAACGSizeHit CountTotal NormTotal
No Reads
dm3
TTGA---------------------------------------------------------------------------------------------------------------------ATGTATC--C-CTTTGGTCAA----------------------T--------------------------TGTATTAT---GTTTTCTTTTCC-CCT-------TATTAT-TTCGACA--CCCGGCTCATTATGTGT---------------------------TTTCTTTCTTTTCTCT-------CATTT---------------------------------------------------------------TTA-----------------------------------------------------TAAAC-----CTCA---------------T--TT------G----CCATCTACAACTA----C-----TATGGTG--TGTTATTTCGATC-----------GATAAA---------------------------------------------------------------TC--A-AAA---------------------------------C--TATGCAGGTACAACAAGCGTGAGGAGGCCCAGGAGGCCATTTCGGCGCTGAACAACGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACAACAAGCGTGAGGA................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGAGGCCATTTCGGCGCTGAAC....2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGAGGAGGCCCAGGA.......................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGGCCCAGGAGGCCATTTCG.............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGGAGGCCATTTCGGCGCTGAA.....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGGAGGCCATTTCGGCGCTG.......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................CCCGGCTCATTATGTGT---------------------------TTT................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCGATC-----------GATAAA---------------------------------------------------------------TC--A-AAA---------------------------------C--.........................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----C-----TATGGTG--TGTTATTTC..........................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACAAGCGTGAGGAGGCCCAG.........................2411.0010000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGGAGGCCATTTCGGCGCTGAAC....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGCGTGAGGAGGCCCAG.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCCATTTCGGCGCTGAAC....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCGATC-----------GATAAA---------------------------------------------------------------TC--A-AA..............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACAAGCGTGAGGAGGCCCAGGA.......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAACAAGCGTGAGGAGGC.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGAGGCCATTTCGGCGCTG.......2211.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCCCAGGAGGCCATTTCGGCGCTG.......2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................ATGTATC--C-CTTTGGTCAA----------------------T--------------------------TG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAA---------------------------------------------------------------TC--A-AAA---------------------------------C--TATGCAG..................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCCAGGAGGCCATTTCGG............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGAGGCCATTTCGGCGCTGAACAAC.2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGAGGAGGCCCAGGAGGCCAT.................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATC-----------GATAAA---------------------------------------------------------------TC--A-AAA---------------------------------C--T........................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGAGGCCATTTCGGCGCTGA......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------T--TT------G----CCATCTACAACTA----C-----TATGG.......................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCAGGAGGCCATTTCGGCGCTGAA.....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--TGTTATTTCGATC-----------GATAAA---------------------------------------------------------------TC--..................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------GATAAA---------------------------------------------------------------TC--A-AAA---------------------------------C--TATGCA...................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACAAGCGTGAGGAGGCCCAGG........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGATC-----------GATAAA---------------------------------------------------------------TC--A-AAA---------------------------------C--TA.......................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTCGATC-----------GATAAA---------------------------------------------------------------TC--A-................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................TTTCTTTTCTCT-------CATTT---------------------------------------------------------------TTA-----------------------------------------------------TA..............................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCCAGGAGGCCATTTCGGCGCT........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTGAGGAGGCCCAGGAGGCCA..................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG--TGTTATTTCGATC-----------GATAA......................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGAGGAGGCCCAGGAGGCCATT................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGAGGAGGCCCAGGAGGCCATTTCGGCG..........3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACAACAAGCGTGAGG.................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
droSim2
TTGT-------------------------------------------------------------------------------------------------CGACTCGCAGAACCTC-TGAATGTATT--C-CTTTGGCCAA----------------------T--------------------------TGTATTAT---G-----TTTTCC-CCT-------TATTAT-TTCGACA--CCCGGCTCATTATG--T---------------------------TTTCTTTCTTTTCTCT-------CATTT---------------------------------------------------------------TTA-----------------------------------------------------TAAACCATCGCTCA---------------T--TT------G----CCATCATC---TA----C-----TATGGTG--TGTTATTTCGATC-----------GATAAA---------------------------------------------------------------TC--A--AA---------------------------------C--TATGCAGGTACAACAAGCGTGAGGAGGCCCAGGAGGCCATTTCGGCGCTGAACAACGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTCGGCGCTGAACAAC.1913.00300300000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCAGGAGGCCATTTCGGCGCTGAAC....2812.00200200000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCAGGAGGCCATTTCGGCGCTG.......2512.00201100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACAACAAGCGTGAGGA................................1911.00100000001000000000
.......................................................................................................ACTCGCAGAACCTC-TGAATGTATT--..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGAGGCCCAGGAGGCCATTTCGGC...........2811.00100010000000000000
...............................................................................................................AACCTC-TGAATGTATT--C-CTTTGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATTTCGGCGCTGAACAAC.2011.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCCAGGAGGCCATTTCGGCGCTG.......2711.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAACAAGCGTGAGGAGGCCCAGGA.......................2611.00100000001000000000
droSec2
GT---------------------------------------------------------------------------------------------------CGACTCGCAGAACCTT-TGAATGTATT--C-CTTTGGCCAA----------------------T--------------------------TGTATTAT---G-----TTTTCC-CCT-------TATTAT-TTCGACA--CCCGGCTCATTATG--T---------------------------TTTCTTTTTTTTCTCT-------CATTT---------------------------------------------------------------TTA-----------------------------------------------------TAAACCATCGCTCA---------------T--TT------G----CCATCATC---TA----C-----TATGGTG--TGTTATTTCGATC-----------GATAAA---------------------------------------------------------------TC--A--AA---------------------------------C--TATGCAGGTACAACAAGCGTGAGGAGGCCCAGGAGGCCATTTCGGCGCTGAACAACGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAACAAGCGTGAGGAGG..............................2011.0011000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGAGGAGGCCCAGGAGGCCATTTC..............2611.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAACAAGCGTGAGGA................................1811.0011000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGAGGAGGCCCAGGAGGC....................2011.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAAGCGTGAGGAGGC.............................1911.0010010
droYak3
TT--------------------------------------------------------------------------------------------------------------------------------------GGCCAA----------------------T--------------------------TGTATTATTAGG-----TTTTCC-GCT-------TATTAT-TTCAACA--CCCGGCTCATTATGTGT---------------------------TTTCTTTCTTTTCTTT-------CATTT---------------------------------------------------------------TTA-----------------------------------------------------TAAACCATCGCTCA---------------T--TT------G----CCATCATC---CA------------CGGTGTGTGTTATTTCGATC-----------GATAAA---------------------------------------------------------------TC--A--AA---------------------------------C--TATACAGGTACAACAAGCGTGAGGAGGCCCAGGAGGCCATATCGGCGCTGAACAACGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGCGTGAGGAGGCCCAGGAGGCC...................2711.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------------------------C--TATACAGGTACAACAAGCGTGAGGA................................2811.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAGGAGGCCCAGGAGGC....................1911.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCCAGGAGGCCATATCGGCGCTGA......2811.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCAGGAGGCCATATCGGCGCT........2411.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCATATCGGCGCTGAACAAC.2111.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAGGAGGCCATATCGGCGCTGAAC....2711.00101000000000
droEre2
CATTTAG--------AA---GTTGTGGAAGT---ATAG-----------------------AATT----------------------------------GGTGACTCGAATGACCAT-TGAATG------C-CTTTGGCCAA----------------------C--------------------------TGTATTAT---G-----TTTTTC-CCT-------TATTAT-TTCGACA--CCCGGCTCATTATGTGT---------------------------TTTCTTTCTTTTCTCT-------CATTT---------------------------------------------------------------TTA-----------------------------------------------------TAAACCATCGCTCA---------------T--TT------G----CCATCATC---TA----T-------CGGTG--TGTTATTTTGATC-----------GATAAA---------------------------------------------------------------TC--A--AA---------------------------------C--TATATAGGTACAACAAGCGTGAGGAGGCCCAGGAGGCCATATCGGCACTGAACAACGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................GTTGTGGAAGT---ATAG-----------------------AATT----------------------------------GGTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACAACAAGCGTGAGGAG...............................2011.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCCCAGGAGGCCATATCGGCACTG.......2611.0010000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACAACAAGCGTGAGGA................................1811.0011000000

Generated: 05/18/2015 at 02:30 AM