ID:

dwi_1802

 Coordinate:

scf2_1100000004590:2067773-2067923 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dwil\GK16401-cds]; exon [dwil_GLEANR_16769:1]; intron [Dwil\GK16401-in]

Repeatable elements

NameClassFamilyStrand
A-richLow_complexityLow_complexity+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGAGGAGGCGGTGGTGGGGCTCGTACTGGTGATGGAGGCGGACGCTATAGGTGAGTATTGCCAAAAAGAAAAGAAGAAAACAACAAAAAAAAGTACGAAAGAAAAAGACAGAAAATTCTGCTATACATACATAGTATGTGAAAAATCAATTCGAGTATACATACAAAGCAAATGAAAAGAAGAAGAGAGGAACAAAAAAAAAACCAGTGTGGCATCCCCATGTCATGTATCTACAGTGGCATACGCGAATT
**************************************************(((.((((.((............................................((.((((....)))))).(((((((...)))))))..............)))))).))).....................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 M020
head
 V118
embryo
 V119
head
..............................GATGGAGGCGGCCGGGATAG......................................................................................................................................................................................................... 20 3 7 34.29 240 202 38 0 0 0
..............................GATGGAGGCGGCCGGGATA.......................................................................................................................................................................................................... 19 3 15 19.07 286 207 75 0 2 2
.GAGGAGGCGGTGGTGGGGC....................................................................................................................................................................................................................................... 19 0 1 7.00 7 0 0 3 1 3
............................GTGATGGAGGCGGCCGGGATA.......................................................................................................................................................................................................... 21 3 6 6.67 40 26 12 0 2 0
...............................ATGGAGGCGGCCGGGATAG......................................................................................................................................................................................................... 19 3 16 6.25 100 92 7 0 1 0
.............................TGATGGAGGCGGCCGGGATA.......................................................................................................................................................................................................... 20 3 6 4.33 26 23 3 0 0 0
............................GTGATGGAGGCGGCCGGGATAG......................................................................................................................................................................................................... 22 3 6 4.17 25 22 3 0 0 0
..............................GATGGAGGCGGCCGGTATA.......................................................................................................................................................................................................... 19 2 1 4.00 4 1 2 0 1 0
.............................TGATGGAGGCGGCCGGGATAG......................................................................................................................................................................................................... 21 3 6 3.33 20 19 1 0 0 0
............................GTGATGGAGGCGGCCGGGAT........................................................................................................................................................................................................... 20 3 11 3.18 35 32 3 0 0 0
...........................CGTGATGGAGGCGGCCGG.............................................................................................................................................................................................................. 18 3 20 2.25 45 37 7 0 0 1
..............................GATGGAGGCGGCCGGTATAG......................................................................................................................................................................................................... 20 2 1 2.00 2 1 0 1 0 0
.......................TACTGGTGATGGAGGCGG.................................................................................................................................................................................................................. 18 0 1 2.00 2 0 0 0 1 1
.............................TGATGGAGGCGGCCGGGAT........................................................................................................................................................................................................... 19 3 20 1.10 22 19 3 0 0 0
............................GTGATGGAGGCGGCCGGGA............................................................................................................................................................................................................ 19 3 20 1.05 21 11 10 0 0 0
......................GTACTGGTGATGGAGGCGGG................................................................................................................................................................................................................. 20 1 1 1.00 1 0 0 1 0 0
....................TCGTACTGGTGATGGAGGCG................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1
.............GTGGGGCTCGTACTGGTGATGGAGGC.................................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0
......................GTACTGGTGATGGAGGCGGT................................................................................................................................................................................................................. 20 1 1 1.00 1 0 0 1 0 0
............................GTGATGGAGGCTGCCGGTATA.......................................................................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0
......................................CGGACGCTATAGGTGAGTAT................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 1 0
GGAGGGGGCGGTGGTGGGGCT...................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
........................ACTGGTGATGGAGGCGGACGCT............................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1
................................................................................................................................GCATAGTATGTGAAAGATCAA...................................................................................................... 21 2 1 1.00 1 0 0 0 1 0
...........TGGTGGGGCTCGTACTGGTG............................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0
GGAGGAGGCGGTGGTGGGGC....................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0
..............TGGGGCTCGTACTGGTGATGGA....................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0
GGAGGAGGCGTTGGTGGG......................................................................................................................................................................................................................................... 18 1 3 0.67 2 2 0 0 0 0
............................GTGATGGAGGCGGTCGGGATA.......................................................................................................................................................................................................... 21 3 3 0.67 2 1 1 0 0 0
........................ACCCGTGATGGAGGCGGCCG............................................................................................................................................................................................................... 20 3 5 0.60 3 3 0 0 0 0
............................GTGATGGAGGCGGTCGGGATAG......................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0
..............................GATGGAGGCGGACGGGATAG......................................................................................................................................................................................................... 20 2 2 0.50 1 1 0 0 0 0
............................GTGATGGAGGCGGCCGGTA............................................................................................................................................................................................................ 19 2 2 0.50 1 0 1 0 0 0
...............................ATGGAGGCGGTCGGGATAG......................................................................................................................................................................................................... 19 3 12 0.33 4 4 0 0 0 0
..............................GATGAAGGCGGCCGGTATAG......................................................................................................................................................................................................... 20 3 3 0.33 1 1 0 0 0 0
......................GTACCCGTGATGGAGGCGGCC................................................................................................................................................................................................................ 21 3 3 0.33 1 1 0 0 0 0
..............................GATGGAGGCGGTCGGGATAG......................................................................................................................................................................................................... 20 3 8 0.25 2 2 0 0 0 0
..............................GATGGAGGCGGCCGGTAT........................................................................................................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0
GGAGGAGGCGTTGGTGGGA........................................................................................................................................................................................................................................ 19 2 16 0.25 4 4 0 0 0 0
.....................CGTACTGGTGGTGGACGC.................................................................................................................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0
...............................ATGGAGGCGGCCGGGATAGG........................................................................................................................................................................................................ 20 3 5 0.20 1 1 0 0 0 0
.GAGGAGGCGTTGGTGGGA........................................................................................................................................................................................................................................ 18 2 19 0.16 3 0 1 0 0 2
..........TTGGTGGGGCTTGTACTG............................................................................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0
.........................CCCGTGATGGAGGCGGCCG............................................................................................................................................................................................................... 19 3 14 0.14 2 1 1 0 0 0
........................ACCCGTGATGGAGGCGGCC................................................................................................................................................................................................................ 19 3 17 0.12 2 2 0 0 0 0
..............................GATGGAGGCGGACGGGAT........................................................................................................................................................................................................... 18 2 11 0.09 1 0 1 0 0 0
................................................................ACAGAAAAGAAGAAAACA......................................................................................................................................................................... 18 1 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

CCTCCTCCGCCACCACCCCGAGCATGACCACTACCTCCGCCTGCGATATCCACTCATAACGGTTTTTCTTTTCTTCTTTTGTTGTTTTTTTTCATGCTTTCTTTTTCTGTCTTTTAAGACGATATGTATGTATCATACACTTTTTAGTTAAGCTCATATGTATGTTTCGTTTACTTTTCTTCTTCTCTCCTTGTTTTTTTTTTGGTCACACCGTAGGGGTACAGTACATAGATGTCACCGTATGCGCTTAA
**************************************************(((.((((.((............................................((.((((....)))))).(((((((...)))))))..............)))))).))).....................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 M020
head
 V118
embryo
 V119
head
....................................CCGCCTGCGATATCCACTCAT.................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0
..................................CTCCGCCTGCGATATCCACTC.................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1
.....TCCGCCACCACCCCGAGCAT.................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0
.................................................................................................................TTAAGACGGTATGTATGTATC..................................................................................................................... 21 1 1 1.00 1 1 0 0 0
...............................................................................................................................................................................................................ACACCGTAGGGGTACAGTACATAGAT.................. 26 0 1 1.00 1 1 0 0 0
...............................................ATCCACTCATAACGGTTTTTC....................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
....................................................CTCATAACGGTTTTTCTTTTC.................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0
....................................................................................................................................................TAAGCTCATATGTATGTT..................................................................................... 18 0 1 1.00 1 1 0 0 0
........................TGACCACTACCTCCGCCTGCGATATCC........................................................................................................................................................................................................ 27 0 1 1.00 1 0 0 1 0
.......CGCCGCCCCCCCTAGCATG................................................................................................................................................................................................................................. 19 3 7 0.14 1 1 0 0 0
.............................................................................................ATGCTCTCTTTTTCTGACT........................................................................................................................................... 19 2 7 0.14 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004590:2067723-2067973 + dwi_1802 GGAGGAGGCGGTGGTGGGGCTCGTACTG---GTGATGGAGGCGGACGCTATAGGTGAGTATTGCCAAAAAGAA-----A-------AGAA-G-------------------------------A---AAA-----------CAACAAAAAAAAG------------TACGAAAGAAAAAGA--------------------------------------------------------------------------------------------------CAG-----------------------------------AAAATTCTGC--------------------------TA----------------------------------------------------------------------------------------------------------------------------------------TACATACATA-GTATGTGA-AAA------ATCAATTCGAGTATACATACAAAG-------------------------------------------------------------------------------------------------------------------------------CAAATGAAAAGAAGAAGAGAGGAACAAAAAAAAAACCA-----GTGTGGCATCCCCAT--GTCATGT------ATCTA----CAGTGGCATACGC--GAATT
droVir3 scaffold_12932:524931-525126 - CCAAAAAAAAAAAAAAAAA------------------------------------------------------------------------------------------------------------G-------------TATGAAAA------------ATCGATTTGGGGCAAGCAAA--------------------------------------------------------------------------------------------------AAA-----------------------------------AAAAATATATATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------TATATTTATATGTATATGA-AACGGGCCCGCCAATGTGCGTATACATACAAGA--------------------------------------------------AATATTG----------------------CAGTACCGGTTGTAAAAGTGAGCACAGCGCACACATAC----------------------------------------------------------------ACAT--A-CACAC------ATTTA----CAGTAGCGTGCGCATCAATT
droMoj3 scaffold_6640:2543-2668 - AAAAAAAAAAAAAAAAAAAAAAA------------------------AGATAAA---------------------------------------------------------------------------------------------------A------------TAAAAAA----------------------------------------------------------------------------------------------------------AAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-AAAAAAATTTTAAGCTGAAAAAGAAAATAGT--TGA--AAA--AAATAAGAATATATGTT------------------------------------------------------------------------------GC--CA--------------------------------------------------------ATAAATATGAAAAAA----AA----AAAAAA
droGri2 scaffold_15081:3563707-3563847 + GCATGGCGCAAAATAAAAT-----------------------------------------------------------------------------------------------------------TGAA---------------AAACTCCGCCCTAAAAAGCGCTATTGCACAAAAAGACAGAATGGAATATG---------------------TAAATAAAAATCAAACTAA---------------------TA-------------------AAACTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-AA--------------------------------------------------AAAAACG----------------------------------------------------------------------------AGAAGC-----------------------------------------------------------CGAAAAAAAAAACAA----AC----AAAAAA
dp5 2:23803412-23803642 - GGCAGAGGCAGCGGTAGAGGTAGCGGCA---GAGGTAACGGCA-------------------------------------------GCGACAGCGGC---------AGAGGTAG-AGTAGGAGAATTGAA---------------TAAA-----------------------------------------------------------------------------------------------------------CAAACGACAACAACAAAAAATCAGCGACTAAATAAAAGGAGGAGGAGGAGAAGGAGAACAAGA--------GCCACAACAA-------------------------------------------TA-A------------------------------------------------------TAAA---------------------------------------------------------------AA--TA----------------------------------------------------------GAAATA--AAA--ACG-------------AAA-------------------------------------------------------------------------ACG---A----------------------AAACGAGAATAGAGGGACGACAG-------AACGC------ATCAA----CAACAACAAATG---TGACA
droPer2 scaffold_25:1398490-1398751 - GGCGGCGGCGGTGGTGCCCGTGC---TG---GGGACGGCGGTGGACGATATAGGTGAGTCTCGGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGGTTATGAAATTATTAAT-----------------A--------T----------------------------------------------G-------------------------TTCGTTTACATGTG--TAG--------------GTGCTTACACACACACAGAGCGCGCGCACACACGCATGCAGATGTGCATGCAGAATATTTATGGTGCCATCGGGCCG------------TG------CATGTGTGCGTGCGTGTGGTTTCGAAAAA------ATCGATTTTAGTATACATACA--------------------------------------------------------CAAGA------------------------------------------------------------------------------GA--AA--------------------------------------------------------GAAAAGAAAAAAAAA----GA----AAGAAA
droAna3 scaffold_13117:3465995-3466199 + AGGAGGATGAGAAAGGT----------------------GGGGGACGAA--AAG-----------------------------------------------------------------------TTAAAAAAAAAAAAAACACGAGAA------------GCCGATACTGAAAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGAAATAAT--AAG--AAG--AAATGAAATAACATCATGTGGGAGAATAGGATGTTTCTTAATATTAATTG---AAAAATTCAATAC-TAAACAAATAAG----AAGAAACCACAAAAACAA------------------------------------------------AAACATAA--------ACAAAAA----CA----AAAACA
droBip1 scf7180000396418:67387-67524 + AAAAAAAAAAAAAAA------------------------------------------------------------------------------------------------------------AATTAAA---------------AAAA-----------------------------------------------------------------------------------------------------------AAAATTACAACAAAAAAAATTT-AAA-----------------------------------AAAAATAATTACAACAAAAA-------------------------------------------AA-AT------------------------------------------------------TA---------------------------------------------------------------CAA--CA----------------------------------------------------------AAAA--AAA--ATATTACAACAAAAAATATTAC------------------------------------------------------------------------------AA--CA--------------------------------------------------------AAAAAAATTAACAAC----AA----AAAAAA
droKik1 scf7180000302684:880019-880213 - GGCGGGGGTGCCGGTGGCGGAGC---TCCAGGTGAAGGTGGAAGAGGACCTGGACGAGAAGG----------------------------------------------------AAGTAATGAAACTGGA---------------TACA-----------------------------------------------------------------------------------------------------------AGGACAAAGACAAGGA------------------------------------TGGGAACAAGGACAAGAACAAAGACAAGGAGATTACTAAGAACA----------------------------------------------------------------------------------AGGATAAG---------------------------------------------------------------AA--TA----------------------------------------------------------CGGGCA--AAG--ACA-------------TTG-------------------------------------------------------------------------GTA---AGG-----------------------------------------------------------ATAAGGATAAAGTCA----CG----GAAAAA
droFic1 scf7180000454050:1277470-1277669 - GGAGGCGGTACAAGGGC---------CG---GCGACGGCGGCGGTCGTTATAGGTGAGTG----------C-A-------------AAACC---ATT---------GGC---------------------------------------------------------------CCACAAA----------------AACCCAT-----------------------------CCGCCTCGATTATGAAAC-ATCATA-----------------A--------T----------------------------------------------T-------------------------TTTGCCAATATATATGCAGAAAACAAA-AAAGAGA--------------------------AAAACATATA----------------------------------TGTCG------------TGT--------G--TGTGTATGTATGCATGTGA-AAA------ATCGATTCGCGTATACATACGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droEle1 scf7180000491001:1736555-1736758 + AGGGCCGGCGATGGC------------------------GGCGGTCGTTATAGGTGAGTAGA-----TCGC---------------------------------------------------------------------------------------------------------------------------------ATCCCCCCCTCTCTCTCAATCACCAT-----TCGATTCGATTATGAAAC-ATCATA-----------------A--------T----------------------------------------------T-------------------------TTTGCCAATATGTGCGCAGAAA-----------GAAAA--------------------ACAAACACATATAT-----------------ATTTTTGAT----CTGTGTCG------------TGT--------GTGCGTGTATGTATGCATGTGA-AAA------ATCGATTCGCGTATACATACGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droRho1 scf7180000779333:1080280-1080573 - GGAGGAGGCGGTACAAGAGC------TG---GCGATGGCGGCGGCCGTTATAGGTGAGTAGA-----T-----------------------------------------------------------------------------------------------------------------------------------CATCCCCCA---------------------------TTCGATTATGAAAC-ATCATA-----------------A--------T------------------------------------------------------------------------TTTGCCAATATGTG--CAGAAA-----------GAAAA--------------------ACATATACACAT-------------------ATATTTGAT----CTGTGTCG------------TGT--------GTGCGTGTATGTATGCATGTGA-AAA------ATCGATTCGCGTATACATACGAAA--------------------------------------------------------G----------------------CGGGGCCAGCCA---AATTACACACACA-CACACACGCA--AACACAT---ACG---T----------------------CTACCTTAGCAGTGGGACACCACTGTAAGCCAC---------CGCA----CAGTGGCGTCCGT-TGAAAA
droBia1 scf7180000302126:556342-556463 + AAAAAAAAGTAAGAA------------------------------------------------------------------------------------------------------------AACGAAA-----------CAAAAAAATAAAA------------AACAAAAAGAAAACC--------------------------------------------------------------------------------------------------CAT-----------------------------------AAAA-------------------ATACACAAAAGA----------------------------------------------------------------------------------CATACAAAA------------------------------------------------------------------------------------------------------------------------------TATTCA--ACA--AAA--------------------------------------------------------------------------------------TAAAAA--------------------------------------------------------------GAAACAAAAAAAAAAACA----AT----AAAAAA
droTak1 scf7180000415169:153330-153486 - AGTAAAGCCTAAAG--------------------------------------------------------GTA-----A-------AAAA-GAAAACAAAACAAAAAAAAATAAAAATTATA-----------------------------------------------------AAAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAAAAGACAT--CACAAAC----------------ATAAC--------TAAACAAAAACCAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAACTATAAAATAAA-----------------------AAACAGAAAGTTTTCG-----------------AACTCCAAAGGAAAC----TA----AAAAAA
droEug1 scf7180000408958:327074-327390 + AGAGCTGGCGATGGC------------------------GGTGGTCGCTATAGGTGAGTACACTAAATTGC-ATATCCATTCTGCAAAA----------------------------------------------------C-----------------------------------------------------AACCCATCCCCCT---------------------------CTCGATTATGAAAC-ATCATA-----------------A--------T----------------------------------------------T-------------------------TTTGCCAATATGTG--CA---A-----------GAAAATA-----------------TGCAAAAATGTATAT-----------------ATATTTGAT----CTGTGTCGTCTTTATGTGTGTGTGTGCGTATCTGTGTGTATGTATGCATGTGA-AAA------ATCGATTCGCGTATACATACGAAA--------------------------------------------------------G----------------------CGGAGCAAGCCA---AAATACACACACA-CGCACATTCA----------------------------------------------------GTGGGACACCACTGTAAGCCACATATAAACACACA----CAGTGGCGTCCA---TAAAC
dm3 chrUextra:14935412-14935546 + CAAAAAACAAAAAACAAAA--------------------------------------------------------------------------------------------------------------------------CAAAACAAAACAA------------AACAAAACAAAACAA--------------------------------------------------------------------------------------------------AAC-----------------------------------AAAACAAAACAAAACAAAAC-------------------------------------------AA-AA------------------------------------------------------CA---------------------------------------------------------------AAA--CA----------------------------------------------------------AAAC--AAA--ACA--AAACAAAACAAAACAAA------------------------------------------------------------------------------AC--AA--------------------------------------------------------AACAAAACAAAACAA----AA----CAAAAC
droSim2 x:12621914-12622035 - GCATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA-AAA------ATCGATTCGCGTATACATACAAAA--------------------------------------------------------G----------------------CGGTGCCAACCA---AAATACACACAGT-CACACATTCG----------------------------------------------------GTGGGACACCACTGTTAGCCATACAAGAACACACA----CAGTGGCGTCCG----TGAA
droSec2 scaffold_21:1031236-1031368 - TATGTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATGCATGTGA-AAA------ATCGATTCGCGTATACATACAAAA--------------------------------------------------------G----------------------CGGTGCCAACCA---AAGTATACACAGT-CACACATTCG----------------------------------------------------GTGGGACACCACTGTTAGCCATACATGAACACACA----CAGTGGCGTCCG----TGAA
droYak3 v2_chrUn_6893:7459-7589 + AGAGGCAGCGGCGGCAGCAGCAGCGACA---GCGGCAGGAGCA-------------------------------------------GTACC---AAC---------AGAAATTA-AATTTCGAAATTAAA---------------TTTA-----------------------------------------------------------------------------------------------------------CAAA-------------------GGAACATGTC--------------------------------------------------------------------------------------------------------CAAAAACTCGCCGAACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGAATATCATAC------------------------------------------------------------------------AAA----AA----ATAAAT
droEre2 scaffold_4690:1042374-1042466 + AAATAAGCAAACAAA------------------------------------------------------------------------------------------------------------AATAAAA-----------------------------------------------------------------------------------------------------CAAA---------------------CC-------------------AAGAAACAAAAC--------------------------------------------------------------------------------------------------------AAAGCGAAAATCGAACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCAAATGAAGACAAAA-------------------------------------------------------------AAGAAGGCAT----TA----AAATAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
GGAGGAGGCGGTGGTGGGGCTCGTACTG---GTGATGGAGGCGGACGCTATAGGTGAGTATTGCCAAAAAGAA-----A-------AGAA-G-------------------------------A---AAA-----------CAACAAAAAAAAG------------TACGAAAGAAAAAGA--------------------------------------------------------------------------------------------------CAG-----------------------------------AAAATTCTGC--------------------------TA----------------------------------------------------------------------------------------------------------------------------------------TACATACATA-GTATGTGA-AAA------ATCAATTCGAGTATACATACAAAG-------------------------------------------------------------------------------------------------------------------------------CAAATGAAAAGAAGAAGAGAGGAACAAAAAAAAAACCA-----GTGTGGCATCCCCAT--GTCATGT------ATCTA----CAGTGGCATACGC--GAATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.GAGGAGGCGGTGGTGGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1917.00730013
.......................TACTG---GTGATGGAGGCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200011
......................GTACTG---GTGATGGAGGCGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
....................TCGTACTG---GTGATGGAGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001
.............GTGGGGCTCGTACTG---GTGATGGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
......................GTACTG---GTGATGGAGGCGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
.........................................CGGACGCTATAGGTGAGTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
........................ACTG---GTGATGGAGGCGGACGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100001
...........TGGTGGGGCTCGTACTG---GTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
GGAGGAGGCGGTGGTGGGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
..............TGGGGCTCGTACTG---GTGATGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
droVir3
CCAAAAAAAAAAAAAAAAA------------------------------------------------------------------------------------------------------------G-------------TATGAAAA------------ATCGATTTGGGGCAAGCAAA--------------------------------------------------------------------------------------------------AAA-----------------------------------AAAAATATATATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------TATATTTATATGTATATGA-AACGGGCCCGCCAATGTGCGTATACATACAAGA--------------------------------------------------AATATTG----------------------CAGTACCGGTTGTAAAAGTGAGCACAGCGCACACATAC----------------------------------------------------------------ACAT--A-CACAC------ATTTA----CAGTAGCGTGCGCATCAATTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGCGTATACATACAAGA--------------------------------------------------...................................................................................................................................................................................2112.002000000000000000000000000002000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAT--A-CACAC------ATTTA----CAGTAGCGTGCG........2611.001000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGA-AACGGGCCCGCCAATGTGCGT.................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACCGGTTGTAAAAGTGAGCACAGCGCACAC....................................................................................................................3311.001000000000000000000000000000000000000000000000001000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAATGTGCGTATACATACA........................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................ATATATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------TATATTTATATGTAT...........................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
AAAAAAAAAAAAAAAAAAAAAAA------------------------AGATAAA---------------------------------------------------------------------------------------------------A------------TAAAAAA----------------------------------------------------------------------------------------------------------AAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-AAAAAAATTTTAAGCTGAAAAAGAAAATAGT--TGA--AAA--AAATAAGAATATATGTT------------------------------------------------------------------------------GC--CA--------------------------------------------------------ATAAATATGAAAAAA----AA----AAAAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.AAAAAAAAAAAAAAAAAAAAAA------------------------AGATAAA---------------------------------------------------------------------------------------------------A------------TAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................36100.101010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------------------------------------------------------------------------GC--CA--------------------------------------------------------ATAAATATGAAAAA.................19140.071100000
droGri2
GCATGGCGCAAAATAAAAT-----------------------------------------------------------------------------------------------------------TGAA---------------AAACTCCGCCCTAAAAAGCGCTATTGCACAAAAAGACAGAATGGAATATG---------------------TAAATAAAAATCAAACTAA---------------------TA-------------------AAACTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-AA--------------------------------------------------AAAAACG----------------------------------------------------------------------------AGAAGC-----------------------------------------------------------CGAAAAAAAAAACAA----AC----AAAAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
GGCAGAGGCAGCGGTAGAGGTAGCGGCA---GAGGTAACGGCA-------------------------------------------GCGACAGCGGC---------AGAGGTAG-AGTAGGAGAATTGAA---------------TAAA-----------------------------------------------------------------------------------------------------------CAAACGACAACAACAAAAAATCAGCGACTAAATAAAAGGAGGAGGAGGAGAAGGAGAACAAGA--------GCCACAACAA-------------------------------------------TA-A------------------------------------------------------TAAA---------------------------------------------------------------AA--TA----------------------------------------------------------GAAATA--AAA--ACG-------------AAA-------------------------------------------------------------------------ACG---A----------------------AAACGAGAATAGAGGGACGACAG-------AACGC------ATCAA----CAACAACAAATG---TGACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................................................................................................................ACTAAATAAAAGGAGGAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
...................................................................................................................................................................................................................................................................................................AAGGAGGAGGAGGAGAAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.2010100000000
droPer2
GGCGGCGGCGGTGGTGCCCGTGC---TG---GGGACGGCGGTGGACGATATAGGTGAGTCTCGGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAGGTTATGAAATTATTAAT-----------------A--------T----------------------------------------------G-------------------------TTCGTTTACATGTG--TAG--------------GTGCTTACACACACACAGAGCGCGCGCACACACGCATGCAGATGTGCATGCAGAATATTTATGGTGCCATCGGGCCG------------TG------CATGTGTGCGTGCGTGTGGTTTCGAAAAA------ATCGATTTTAGTATACATACA--------------------------------------------------------CAAGA------------------------------------------------------------------------------GA--AA--------------------------------------------------------GAAAAGAAAAAAAAA----GA----AAGAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------CATGTGTGCGTGCGTG................................................................................................................................................................................................................................................................................1820.501010000
droAna3
AGGAGGATGAGAAAGGT----------------------GGGGGACGAA--AAG-----------------------------------------------------------------------TTAAAAAAAAAAAAAACACGAGAA------------GCCGATACTGAAAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAGAAATAAT--AAG--AAG--AAATGAAATAACATCATGTGGGAGAATAGGATGTTTCTTAATATTAATTG---AAAAATTCAATAC-TAAACAAATAAG----AAGAAACCACAAAAACAA------------------------------------------------AAACATAA--------ACAAAAA----CA----AAAACASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGTGGGAGAATAGGATGT..........................................................................................................................................................2212.002010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAATAACATCATGTGGGC.....................................................................................................................................................................2111.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATAACATCATGTGGGA.....................................................................................................................................................................1911.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--AAATGAAATAACATCATGTGGGA.....................................................................................................................................................................2411.001001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATAACATCATGTGGGAG....................................................................................................................................................................2111.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAATAACATCATGTGGGA.....................................................................................................................................................................2211.001000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAATAACATCATGTGGGA.....................................................................................................................................................................2111.001000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATCATGTGGGAGAATAGGAT............................................................................................................................................................2311.001010000
..............GGT----------------------GGGGGACGAA--AAG-----------------------------------------------------------------------TTAAAAAAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGAGAATAGGATGTTTC.......................................................................................................................................................2111.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAACATCATGTGGGAGAATAGGA.............................................................................................................................................................2511.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATAACATCATGTGGGA.....................................................................................................................................................................2011.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGAAATAACATCATGTGGG......................................................................................................................................................................2111.001010000
.......TGAGAAAGGT----------------------GGGGGACGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
.GGAGGATGAGAAAGGT----------------------GGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAACCACAAAAACAA------------------------------------------------AAA....................................2120.501010000
droBip1
AAAAAAAAAAAAAAA------------------------------------------------------------------------------------------------------------AATTAAA---------------AAAA-----------------------------------------------------------------------------------------------------------AAAATTACAACAAAAAAAATTT-AAA-----------------------------------AAAAATAATTACAACAAAAA-------------------------------------------AA-AT------------------------------------------------------TA---------------------------------------------------------------CAA--CA----------------------------------------------------------AAAA--AAA--ATATTACAACAAAAAATATTAC------------------------------------------------------------------------------AA--CA--------------------------------------------------------AAAAAAATTAACAAC----AA----AAAAAASizeHit CountTotal NormTotal
No Reads
droKik1
GGCGGGGGTGCCGGTGGCGGAGC---TCCAGGTGAAGGTGGAAGAGGACCTGGACGAGAAGG----------------------------------------------------AAGTAATGAAACTGGA---------------TACA-----------------------------------------------------------------------------------------------------------AGGACAAAGACAAGGA------------------------------------TGGGAACAAGGACAAGAACAAAGACAAGGAGATTACTAAGAACA----------------------------------------------------------------------------------AGGATAAG---------------------------------------------------------------AA--TA----------------------------------------------------------CGGGCA--AAG--ACA-------------TTG-------------------------------------------------------------------------GTA---AGG-----------------------------------------------------------ATAAGGATAAAGTCA----CG----GAAAAASizeHit CountTotal NormTotal
No Reads
droFic1
GGAGGCGGTACAAGGGC---------CG---GCGACGGCGGCGGTCGTTATAGGTGAGTG----------C-A-------------AAACC---ATT---------GGC---------------------------------------------------------------CCACAAA----------------AACCCAT-----------------------------CCGCCTCGATTATGAAAC-ATCATA-----------------A--------T----------------------------------------------T-------------------------TTTGCCAATATATATGCAGAAAACAAA-AAAGAGA--------------------------AAAACATATA----------------------------------TGTCG------------TGT--------G--TGTGTATGTATGCATGTGA-AAA------ATCGATTCGCGTATACATACGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droEle1
AGGGCCGGCGATGGC------------------------GGCGGTCGTTATAGGTGAGTAGA-----TCGC---------------------------------------------------------------------------------------------------------------------------------ATCCCCCCCTCTCTCTCAATCACCAT-----TCGATTCGATTATGAAAC-ATCATA-----------------A--------T----------------------------------------------T-------------------------TTTGCCAATATGTGCGCAGAAA-----------GAAAA--------------------ACAAACACATATAT-----------------ATTTTTGAT----CTGTGTCG------------TGT--------GTGCGTGTATGTATGCATGTGA-AAA------ATCGATTCGCGTATACATACGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droRho1
GGAGGAGGCGGTACAAGAGC------TG---GCGATGGCGGCGGCCGTTATAGGTGAGTAGA-----T-----------------------------------------------------------------------------------------------------------------------------------CATCCCCCA---------------------------TTCGATTATGAAAC-ATCATA-----------------A--------T------------------------------------------------------------------------TTTGCCAATATGTG--CAGAAA-----------GAAAA--------------------ACATATACACAT-------------------ATATTTGAT----CTGTGTCG------------TGT--------GTGCGTGTATGTATGCATGTGA-AAA------ATCGATTCGCGTATACATACGAAA--------------------------------------------------------G----------------------CGGGGCCAGCCA---AATTACACACACA-CACACACGCA--AACACAT---ACG---T----------------------CTACCTTAGCAGTGGGACACCACTGTAAGCCAC---------CGCA----CAGTGGCGTCCGT-TGAAAASizeHit CountTotal NormTotal
No Reads
droBia1
AAAAAAAAGTAAGAA------------------------------------------------------------------------------------------------------------AACGAAA-----------CAAAAAAATAAAA------------AACAAAAAGAAAACC--------------------------------------------------------------------------------------------------CAT-----------------------------------AAAA-------------------ATACACAAAAGA----------------------------------------------------------------------------------CATACAAAA------------------------------------------------------------------------------------------------------------------------------TATTCA--ACA--AAA--------------------------------------------------------------------------------------TAAAAA--------------------------------------------------------------GAAACAAAAAAAAAAACA----AT----AAAAAASizeHit CountTotal NormTotal
No Reads
droTak1
AGTAAAGCCTAAAG--------------------------------------------------------GTA-----A-------AAAA-GAAAACAAAACAAAAAAAAATAAAAATTATA-----------------------------------------------------AAAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAAAAGACAT--CACAAAC----------------ATAAC--------TAAACAAAAACCAAAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAAACTATAAAATAAA-----------------------AAACAGAAAGTTTTCG-----------------AACTCCAAAGGAAAC----TA----AAAAAASizeHit CountTotal NormTotal
No Reads
droEug1
AGAGCTGGCGATGGC------------------------GGTGGTCGCTATAGGTGAGTACACTAAATTGC-ATATCCATTCTGCAAAA----------------------------------------------------C-----------------------------------------------------AACCCATCCCCCT---------------------------CTCGATTATGAAAC-ATCATA-----------------A--------T----------------------------------------------T-------------------------TTTGCCAATATGTG--CA---A-----------GAAAATA-----------------TGCAAAAATGTATAT-----------------ATATTTGAT----CTGTGTCGTCTTTATGTGTGTGTGTGCGTATCTGTGTGTATGTATGCATGTGA-AAA------ATCGATTCGCGTATACATACGAAA--------------------------------------------------------G----------------------CGGAGCAAGCCA---AAATACACACACA-CGCACATTCA----------------------------------------------------GTGGGACACCACTGTAAGCCACATATAAACACACA----CAGTGGCGTCCA---TAAACSizeHit CountTotal NormTotal
No Reads
dm3
CAAAAAACAAAAAACAAAA--------------------------------------------------------------------------------------------------------------------------CAAAACAAAACAA------------AACAAAACAAAACAA--------------------------------------------------------------------------------------------------AAC-----------------------------------AAAACAAAACAAAACAAAAC-------------------------------------------AA-AA------------------------------------------------------CA---------------------------------------------------------------AAA--CA----------------------------------------------------------AAAC--AAA--ACA--AAACAAAACAAAACAAA------------------------------------------------------------------------------AC--AA--------------------------------------------------------AACAAAACAAAACAA----AA----CAAAACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.AAAAAACAAAAAACAAAA--------------------------------------------------------------------------------------------------------------------------C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AAAAAACAAAAAACAAAA--------------------------------------------------------------------------------------------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................C-------------------------------------------AA-AA------------------------------------------------------CA---------------------------------------------------------------AAA--CA----------------------------------------------------------AAAC--AA....................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA----------------------------------------------------------AAAC--AAA--ACA--AAACAA......................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAAAACAAA------------------------------------------------------------------------------AC--AA--------------------------------------------------------...............................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAACAAA------------------------------------------------------------------------------AC--AA--------------------------------------------------------AACAA..........................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA------------------------------------------------------------------------------AC--AA--------------------------------------------------------AACAAAACAAA....................18200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--AAACAAAACAAAACAAA------------------------------------------------------------------------------.............................................................................................18200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------------------------------------------------------AAA--CA----------------------------------------------------------AAAC--AAA--ACA--A...........................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--AAA--ACA--AAACAAAACAA.................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAA------------------------------------------------------------------------------AC--AA--------------------------------------------------------AACAAAACAA.....................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAAAACAAA------------------------------------------------------------------------------AC--AA--------------------------------------------------------A..............................18200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAAA------------------------------------------------------------------------------AC--AA--------------------------------------------------------AACAAA.........................18200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................CAAAAC-------------------------------------------AA-AA------------------------------------------------------CA---------------------------------------------------------------AAA--CA----------------------------------------------------------A...........................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------------------------------------------------------AACAAAACAAAACAA----A...........18200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAAAACAA----AA----CAAA..18200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................CAAAACAAAAC-------------------------------------------AA-AA------------------------------------------------------CA---------------------------------------------------------------A............................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AACAAAAAACAAAA--------------------------------------------------------------------------------------------------------------------------CAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--AAACAAAACAAAACAA............................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AAAAACAAAA--------------------------------------------------------------------------------------------------------------------------CAAAACAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA-AAA------ATCGATTCGCGTATACATACAAAA--------------------------------------------------------G----------------------CGGTGCCAACCA---AAATACACACAGT-CACACATTCG----------------------------------------------------GTGGGACACCACTGTTAGCCATACAAGAACACACA----CAGTGGCGTCCG----TGAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.CATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA-AAA------ATCGATTCGCG..................................................................................................................................................................................................................................................2111.00110000000000000000
droSec2
TATGTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTATGCATGTGA-AAA------ATCGATTCGCGTATACATACAAAA--------------------------------------------------------G----------------------CGGTGCCAACCA---AAGTATACACAGT-CACACATTCG----------------------------------------------------GTGGGACACCACTGTTAGCCATACATGAACACACA----CAGTGGCGTCCG----TGAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACA----CAGTGGCGTCCG----TG..2111.0011000
droYak3
AGAGGCAGCGGCGGCAGCAGCAGCGACA---GCGGCAGGAGCA-------------------------------------------GTACC---AAC---------AGAAATTA-AATTTCGAAATTAAA---------------TTTA-----------------------------------------------------------------------------------------------------------CAAA-------------------GGAACATGTC--------------------------------------------------------------------------------------------------------CAAAAACTCGCCGAACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGAATATCATAC------------------------------------------------------------------------AAA----AA----ATAAATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................CAAA-------------------GGAACATGTC--------------------------------------------------------------------------------------------------------CAAAAACTCGC.................................................................................................................................................................................................................................................................................................................................................................................2512.00202000000000
.................CAGCAGCGACA---GCGGCAGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
................................................................................................................................................................................................................................................................CAAA-------------------GGAACATGTC--------------------------------------------------------------------------------------------------------CAAAAACTCGCC................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
.........................................................................................CC---AAC---------AGAAATTA-AATTTCGAAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
........CGGCGGCAGCAGCAGCGACA---GCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100100000000
....GCAGCGGCGGCAGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20170.06100100000000
droEre2
AAATAAGCAAACAAA------------------------------------------------------------------------------------------------------------AATAAAA-----------------------------------------------------------------------------------------------------CAAA---------------------CC-------------------AAGAAACAAAAC--------------------------------------------------------------------------------------------------------AAAGCGAAAATCGAACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGCAAATGAAGACAAAA-------------------------------------------------------------AAGAAGGCAT----TA----AAATAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...TAAGCAAACAAA------------------------------------------------------------------------------------------------------------AATAAAA-----------------------------------------------------------------------------------------------------CAAA---------------------CC-------------------AAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0011000000

Generated: 05/18/2015 at 02:27 AM