ID:

dwi_176

 Coordinate:

scf2_1100000004887:450460-450539 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.9 -25.6 -25.6

Flybase annnotation

Antisense to CDS [Dwil\GK16077-cds]; Antisense to exon [dwil_GLEANR_16440:3]; Antisense to intron [Dwil\GK16077-in]; Antisense to exon [dwil_GLEANR_16440:2]; Antisense to CDS [Dwil\GK16077-cds]

Repeatable elements

NameClassFamilyStrand
Gypsy-13_DWil-I-intLTRGypsy-
mature
  1. dwi_167  scf2_1100000004887:137804-137827 -
  2. dwi_176  scf2_1100000004887:450460-450483 +
star
  1. dwi_167  scf2_1100000004887:137771-137797 -
  2. dwi_176  scf2_1100000004887:450490-450516 +

Sense Strand Reads

TTCACTGAATTGGGGCTGAGGGTCGCCGGTACATTTACTGGTGTTGGAGATAGAATAGCTGTATTGTTGGGTGGGGGCGTTGTCCACTATTGCCAATGTTCGCCACGCGACATTGGCATGCTGCTGTTTTCCGAAGGGTGACTTGTTGTTAGTGGTGCCTCTTTCGTGAGCTGGCTGCGA
***********************************.....................((((((..(((((.((((((((((((...........)))))))).)))).)))))...))).)))********************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
 V117
male body		 V119
head
 M020
head
..................................................TAGAATAGCTGTATTGTTGGGTGG.......................................................................................................... 24 0 2 286.00 572 409 155 7 1 0
..................................................TAGAATAGCTGTATTGTTGGGT............................................................................................................ 22 0 2 190.50 381 352 27 2 0 0
..................................................TAGAATAGCTGTATTGTTGGGTGGG......................................................................................................... 25 0 2 164.50 329 225 99 3 1 1
..................................................TAGAATAGCTGTATTGTTGGGTG........................................................................................................... 23 0 2 150.50 301 236 61 3 1 0
..................................................TAGAATAGCTGTATTGTTGGG............................................................................................................. 21 0 2 62.00 124 107 14 3 0 0
..................................................TAGAATAGCTGTATTGTTGGGTGGGG........................................................................................................ 26 0 2 50.50 101 27 73 1 0 0
................................................................................TGTCCACTATTGCCAATGTTCGCCACG......................................................................... 27 0 2 21.50 43 13 30 0 0 0
..................................................TAGAATAGCTGTATTGTTGG.............................................................................................................. 20 0 2 15.50 31 21 9 1 0 0
..................................................TAGAATAGCTGTATTGTTGGGTGGGGG....................................................................................................... 27 0 2 14.50 29 0 23 5 0 1
................................................................................TGTCCACTATTGCCAATGTTCGCCA........................................................................... 25 0 2 11.00 22 0 22 0 0 0
.................................................................................................................TGGCATGCTGCTGTTTTCCGAAGGG.......................................... 25 0 10 7.10 71 24 47 0 0 0
...................................................AGAATAGCTGTATTGTTGGGTGG.......................................................................................................... 23 0 2 6.50 13 1 12 0 0 0
.............................TACATTTACTGGTGTTGGAGA.................................................................................................................................. 21 0 5 5.60 28 16 12 0 0 0
.......................................................................................TATTGCCAATGTTCGCCACGCGACAT................................................................... 26 0 2 5.00 10 0 10 0 0 0
...............................................................................TTGTCCACTATTGCCAATGTTCGCC............................................................................ 25 0 2 4.50 9 2 7 0 0 0
................................................................................TGTCCACTATTGCCAATGTTCGCCAC.......................................................................... 26 0 2 4.50 9 2 7 0 0 0
................................................................................TGTCCACTATTGCCAATGTTCGCCACGC........................................................................ 28 0 2 4.50 9 1 8 0 0 0
.......................................................TAGCTGTATTGTTGGGTGGG......................................................................................................... 20 0 2 4.50 9 9 0 0 0 0
.......................................................TAGCTGTATTGTTGGGTGGGG........................................................................................................ 21 0 2 4.50 9 7 1 0 1 0
................................................................................TGTCCACTATTGCCAATGTTCGCC............................................................................ 24 0 2 4.50 9 1 8 0 0 0
.................................................................................................................TGGCATGCTGCTGTTTTCCGAAGG........................................... 24 0 11 4.09 45 25 20 0 0 0
...................................................AGAATAGCTGTATTGTTGGGTGGG......................................................................................................... 24 0 2 3.50 7 0 7 0 0 0
..................................................TAGAATAGCTGTATTGTTGGGTGGGT........................................................................................................ 26 1 2 3.50 7 6 1 0 0 0
.............................TACATTTACTGGTGTTGGAGATAGAA............................................................................................................................. 26 0 5 3.20 16 8 7 0 1 0
.................................................................................GTCCACTATTGCCAATGTTCGCCACG......................................................................... 26 0 2 3.00 6 0 6 0 0 0
................................................................................................................TTGGCATGCTGCTGTTTTCCGAAGGG.......................................... 26 0 10 2.90 29 17 12 0 0 0
.............................TACATTTACTGGTGTTGGAGATAGA.............................................................................................................................. 25 0 5 2.60 13 12 1 0 0 0
...............................................................................TTGTCCACTATTGCCAATGTTCGCCA........................................................................... 26 0 2 2.50 5 0 5 0 0 0
..................................................TAGAATAGCTGTATTGTTGGGTGGTA........................................................................................................ 26 2 2 2.00 4 2 1 1 0 0
...................................................AGAATAGCTGTATTGTTGGGTG........................................................................................................... 22 0 2 2.00 4 1 3 0 0 0
..................................................TAGAATAGCTGTATTGTTGGGTGGT......................................................................................................... 25 1 2 2.00 4 4 0 0 0 0
................TGAGGGTCGCCGGTACATTTACTGG........................................................................................................................................... 25 0 6 2.00 12 12 0 0 0 0
.................................................................................................................TGGCATGCTGCTGTTTTCCGAAGGGT......................................... 26 0 10 2.00 20 5 15 0 0 0
...............................................................................TTGTCCACTATTGCCAATGTTCGC............................................................................. 24 0 2 2.00 4 1 3 0 0 0
.............................TACATTTACTGGTGTTGGAGATAGAAT............................................................................................................................ 27 0 5 1.60 8 8 0 0 0 0
............................................TGGAGATAGAATAGCTGTATTGTTGG.............................................................................................................. 26 0 2 1.50 3 2 1 0 0 0
...............................................................................TTGTCCACTATTGCCAATGTTCGCCACG......................................................................... 28 0 2 1.50 3 0 3 0 0 0
..................................................................................TCCACTATTGCCAATGTTCGCCACGCG....................................................................... 27 0 2 1.50 3 0 3 0 0 0
.......................................................TAGCTGTATTGTTGGGTGG.......................................................................................................... 19 0 2 1.50 3 2 1 0 0 0
...................................................AGAATAGCTGTATTGTTGGGT............................................................................................................ 21 0 2 1.50 3 0 3 0 0 0
..................................................TAGAATAGCTGTATTGTTTGGT............................................................................................................ 22 1 2 1.50 3 3 0 0 0 0
..................................................TAGAATAGCTGTATTGTTGGGTGT.......................................................................................................... 24 1 2 1.50 3 3 0 0 0 0
.................................................ATAGAATAGCTGTATTGTTGGGTG........................................................................................................... 24 0 2 1.50 3 3 0 0 0 0
................................................................................TGTCCACTATTGCCAATGTTCGC............................................................................. 23 0 2 1.50 3 0 3 0 0 0
.......................................................TAGCTGTATTGTTGGGTGGGGG....................................................................................................... 22 0 2 1.50 3 1 1 1 0 0
.............................TACATTTACTGGTGTTGGAGATAG............................................................................................................................... 24 0 5 1.40 7 6 1 0 0 0
TTCACTGAATTGGGGCTGAGGGTCGC.......................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
..................................................TAGAATAGCTGTATTGTTGGGA............................................................................................................ 22 1 2 1.00 2 2 0 0 0 0
..................................................TAGAATAGCTGTATTGTTGTGTG........................................................................................................... 23 1 2 1.00 2 2 0 0 0 0
..................................................TATAATAGCTGTATTGTTGGGTG........................................................................................................... 23 1 2 1.00 2 2 0 0 0 0
..................................................TAGAATAGCTGTATTGCTGGGTGG.......................................................................................................... 24 1 2 1.00 2 1 1 0 0 0
.....................................................AATAGCTGTATTGTTGGGTGGG......................................................................................................... 22 0 2 1.00 2 2 0 0 0 0
..................................................TAGAATAGCTGTATTGTTGGGTT........................................................................................................... 23 1 2 1.00 2 2 0 0 0 0
................................................................................TGTCCACTATTGCCAATGTTCGCCACGCG....................................................................... 29 0 2 1.00 2 0 2 0 0 0
..................................................TAGAGTAGCTGTATTGTTGGGT............................................................................................................ 22 1 2 1.00 2 1 1 0 0 0
..................................................TAGAATATCTGTATTGTTGGGTGGG......................................................................................................... 25 1 2 1.00 2 1 1 0 0 0
...............................................................................................................................................TGTTGTTAGTGGTGCCTCTTTCGTG............ 25 0 1 1.00 1 1 0 0 0 0
.......................................................TAGCTGTATTGTTGGGTG........................................................................................................... 18 0 2 1.00 2 2 0 0 0 0
...........................................................................................................................................................TGCCTCTTTCGTGAGCTGGCTGCGA 25 0 5 1.00 5 0 5 0 0 0
..................................................TAGAATAGCTGTATTGTTTGGTGG.......................................................................................................... 24 1 2 1.00 2 2 0 0 0 0
..................................................TAGAATAGCCGTATTGTTGGGTGG.......................................................................................................... 24 1 2 1.00 2 1 1 0 0 0
........................................................AGCTGTATTGTTGGGTGGGGG....................................................................................................... 21 0 2 1.00 2 2 0 0 0 0
..................................................................................TCCACTATTGCCAATGTTCGCCACGCGA...................................................................... 28 0 2 1.00 2 0 2 0 0 0
..................................................TATAATAGCTGTATTGTTGGGTGG.......................................................................................................... 24 1 2 1.00 2 2 0 0 0 0
..................................................TAGAATAGCTGTATTGTTGGGTGGGGT....................................................................................................... 27 1 2 1.00 2 0 2 0 0 0
...................................................................................CCACTATTGCCAATGTTCGCCACGCGA...................................................................... 27 0 2 1.00 2 0 2 0 0 0
...................................................AGAATAGCTGTATTGTTGGGTGGGGG....................................................................................................... 26 0 2 1.00 2 0 2 0 0 0
...................................................................................................TCGCCACGCGACATTGGCATGCTGC........................................................ 25 0 2 1.00 2 0 2 0 0 0
......................................................................................................................TGCTGCTGTTTTCCGAAGGGTGA....................................... 23 0 13 0.85 11 9 1 1 0 0
.............................TACATTTACTGGTGTTGGAG................................................................................................................................... 20 0 5 0.80 4 2 2 0 0 0
................................................................................................................TTGGCATGCTGCTGTTTTCCGAAGG........................................... 25 0 11 0.73 8 7 1 0 0 0
................................................................................................................TTGGCATGCTGCTGTTTTCCGAAGGGT......................................... 27 0 10 0.70 7 2 5 0 0 0
......................................................................................................................TGCTGCTGTTTTCCGAAGGGTGACT..................................... 25 0 13 0.69 9 6 3 0 0 0
...................................................TAAATAGCTGTATTGTTGGGTGG.......................................................................................................... 23 2 3 0.67 2 1 1 0 0 0
...................................TACTGGTGTTGGAGATAGAATAGCTG....................................................................................................................... 26 0 5 0.60 3 3 0 0 0 0
.................................TTTACTGGTGTTGGAGATAGAATAGC......................................................................................................................... 26 0 5 0.60 3 3 0 0 0 0
.................................................................................................................TGGCATGCTGCTGTTTTCCGAAGGGTG........................................ 27 0 10 0.60 6 2 4 0 0 0
......................................................................................................................TGCTGCTGTTTTCCGAAGGGTGACTT.................................... 26 0 9 0.56 5 3 2 0 0 0
..................................................TAGAATAGCTGTATTGTTTGG............................................................................................................. 21 1 2 0.50 1 1 0 0 0 0
.................................................................................GTCCACTATTGCCAATGTTCGCCACGCG....................................................................... 28 0 2 0.50 1 0 1 0 0 0
.............................................................................CGTTGTCCACTATTGCCAATGTTCGCCA........................................................................... 28 0 2 0.50 1 0 1 0 0 0
..................................................TAGACTAGCTGTATTGTTGGG............................................................................................................. 21 1 2 0.50 1 1 0 0 0 0
..................................................................................TCCACTATTGCCAATGTTCGCCACG......................................................................... 25 0 2 0.50 1 1 0 0 0 0
...................................................AGAATAGCTGTATTGTTGGG............................................................................................................. 20 0 2 0.50 1 0 1 0 0 0
.............................................................................CGTTGTCCACTATTGCCAATGTTCG.............................................................................. 25 0 2 0.50 1 0 1 0 0 0
................................................................................TGTCCATTATTGCCAATGTTCGCCACG......................................................................... 27 1 2 0.50 1 1 0 0 0 0
..................................................TAGAATAGCTGTATTGTTGGGTGGTT........................................................................................................ 26 2 2 0.50 1 0 0 0 1 0
..................................................TAGAATAGCTGTATTGTTGGGTGCG......................................................................................................... 25 1 2 0.50 1 1 0 0 0 0
..................................................TAGAATAGCCGTATTGTTGGGTGGGGG....................................................................................................... 27 1 2 0.50 1 0 0 1 0 0
..................................................TAGAATAGCTGTGTTGTTGGGTG........................................................................................................... 23 1 2 0.50 1 1 0 0 0 0
......................................................ATAGCTGTATTGTTGGGTGG.......................................................................................................... 20 0 2 0.50 1 0 1 0 0 0
...................................................AGAATAGCTGTATTGTTGGGTGGGG........................................................................................................ 25 0 2 0.50 1 0 1 0 0 0
..................................................TAGAATAGCTGTATTATTGGGTGGGG........................................................................................................ 26 1 2 0.50 1 0 1 0 0 0
................................................................................TGTCCACTATTGCCAATGTTCGCCACGTT....................................................................... 29 2 2 0.50 1 0 1 0 0 0
..................................................CAGAATATCTGTATTGTTGGGTGG.......................................................................................................... 24 2 2 0.50 1 1 0 0 0 0
...............................................................................TTGTCCACTATTGCCAATGTTCGCCAC.......................................................................... 27 0 2 0.50 1 0 1 0 0 0
..................................................TAGAATGGCTGTATTGTTGGGTGGG......................................................................................................... 25 1 2 0.50 1 1 0 0 0 0
..................................................TCGAATAGTTGTATTGTTGGGGGG.......................................................................................................... 24 3 2 0.50 1 1 0 0 0 0
.................................................................................GTCCACTATTGGCAATGTTCGCCACG......................................................................... 26 1 2 0.50 1 0 1 0 0 0
..................................................TAGAATAGCTGGATTGTCGGGT............................................................................................................ 22 2 2 0.50 1 1 0 0 0 0
..................................................TAGAATAGCTGTATTGTTGGGTA........................................................................................................... 23 1 2 0.50 1 1 0 0 0 0
....................................................TAATAGCTGTATTGTTGGGTGG.......................................................................................................... 22 1 2 0.50 1 0 1 0 0 0
..................................................TAGAATAGCCGTATTGTTGGGTGGG......................................................................................................... 25 1 2 0.50 1 1 0 0 0 0
.............................................................TATTGTTGGGTGGGGGCGTTGTCC............................................................................................... 24 0 2 0.50 1 0 1 0 0 0
....................................................................................CACTATTGCCAATGTTCGCCACGCGACA.................................................................... 28 0 2 0.50 1 0 1 0 0 0
..................................................TAGAATAGATGTATTGTTGGGT............................................................................................................ 22 1 2 0.50 1 1 0 0 0 0
...................................................................................................TCGCCACGCGACATTGGCATGCTGCTGT..................................................... 28 0 2 0.50 1 1 0 0 0 0
..................................................CAGAATAGCTGTATTGTTGGGTGGGG........................................................................................................ 26 1 2 0.50 1 1 0 0 0 0
..............................................................................GTTGTCCACTATTGCCAATGTTCGC............................................................................. 25 0 2 0.50 1 0 1 0 0 0
..................................................TAGAATAGCTGTATTTTTGGGTGG.......................................................................................................... 24 1 2 0.50 1 1 0 0 0 0
..................................................TAGAATAGCTGTATTGTTGGGTGGGA........................................................................................................ 26 1 2 0.50 1 0 1 0 0 0
...................................................................TGGGTGGGGGCGTTGTCCACTATTGC....................................................................................... 26 0 2 0.50 1 0 0 1 0 0
..................................................TAGAATAGCTGTATTGTTCGGTG........................................................................................................... 23 1 2 0.50 1 1 0 0 0 0
..................................................TAGACTAGCTGTATTGTTGGGTG........................................................................................................... 23 1 2 0.50 1 1 0 0 0 0
................................................................................TGTCGACTATTGCCAATGTTCGCCACG......................................................................... 27 1 2 0.50 1 1 0 0 0 0
.................................................................................GTCCACTATTGACAATGTTCGCCACG......................................................................... 26 1 2 0.50 1 0 1 0 0 0
..............................................................................GTTGTCCACTATTGCCAATGTTCGCCA........................................................................... 27 0 2 0.50 1 0 1 0 0 0
.................................................GTAGAATAGCTGTATTGTTGGGTGGGG........................................................................................................ 27 1 2 0.50 1 0 1 0 0 0
......................................................................................CTATTGCCAATGTTCGCCACG......................................................................... 21 0 2 0.50 1 0 1 0 0 0
..................................................TAGAATAGATGTATTGTTGGATGG.......................................................................................................... 24 2 2 0.50 1 1 0 0 0 0
..................................................TAGAATAGCTGTATTTTTGGGTGGG......................................................................................................... 25 1 2 0.50 1 1 0 0 0 0
..................................................TAGAATAGCTGTATTTTTGGGT............................................................................................................ 22 1 2 0.50 1 1 0 0 0 0
..................................................TAGAATAGCTGTATTGTT................................................................................................................ 18 0 2 0.50 1 0 1 0 0 0
........................................................................................ATTGCCAATGTTCGCCACGCGACAT................................................................... 25 0 2 0.50 1 0 1 0 0 0
..................................................TAGAATAGCTGTATTATTGGG............................................................................................................. 21 1 2 0.50 1 1 0 0 0 0
..................................................TAGAATACCTGTATTGTTGGGT............................................................................................................ 22 1 2 0.50 1 1 0 0 0 0
........................................................................................ATTGCCAATGTTCGCCACG......................................................................... 19 0 2 0.50 1 1 0 0 0 0
................................................................................TGTCCACTATTGCCAATGTTCGCCACTC........................................................................ 28 1 2 0.50 1 0 1 0 0 0
......................................................................................CTATTGCCAATGTTCGCCACGCGACAT................................................................... 27 0 2 0.50 1 0 1 0 0 0
..................................................TAGAATAGCTGTATTGTTGGTGG........................................................................................................... 23 2 2 0.50 1 1 0 0 0 0
................................................................................TGTCCACTATTGCCAATGTTCGCCACT......................................................................... 27 1 2 0.50 1 0 1 0 0 0
..................................................TAGAATAGCTGTATTGTTAGGT............................................................................................................ 22 1 2 0.50 1 0 1 0 0 0
..................................................TAGAATAGCTGTATTGTTG............................................................................................................... 19 0 2 0.50 1 1 0 0 0 0
..................................................TACAATAGCTGTATTGTTGGGTGG.......................................................................................................... 24 1 2 0.50 1 0 1 0 0 0
..................................................TAGAATAGCTGTATTGTTGGGTGA.......................................................................................................... 24 1 2 0.50 1 1 0 0 0 0
..................................................TAGAATAGCTGTACTGTTGGGTG........................................................................................................... 23 1 2 0.50 1 1 0 0 0 0
..................................................TAGAATAGCTGTATTATTGGGT............................................................................................................ 22 1 2 0.50 1 1 0 0 0 0
..................................................................................TCCACTATTGCCAATGTTCGCCACGCGAC..................................................................... 29 0 2 0.50 1 0 0 0 0 1
..................................................TAGAATAGCTGTATTGTTGGGTGGGTA....................................................................................................... 27 2 2 0.50 1 0 1 0 0 0
..................................................TAGAATAGCTGTATTGTTGGGTGGTTT....................................................................................................... 27 3 2 0.50 1 1 0 0 0 0
..............................................................................GTTGTCCACTATTGCCAATGTTCGCC............................................................................ 26 0 2 0.50 1 0 1 0 0 0
.........................................................................................TTGCCAATGTTCGCCACGCGACATTGG................................................................ 27 0 2 0.50 1 1 0 0 0 0
........................................................................................................ACGCGACATTGGCATGCTGCTGTT.................................................... 24 0 2 0.50 1 0 1 0 0 0
..................................................TAGAATAGCTGTACTGTTGGG............................................................................................................. 21 1 2 0.50 1 1 0 0 0 0
..................................................GAGAATAGCTGTATTGTTGGGTGG.......................................................................................................... 24 1 2 0.50 1 0 1 0 0 0
.................................................................................GTCCACTATTGCCAATGTTCGCCA........................................................................... 24 0 2 0.50 1 0 1 0 0 0
..............................................................................TTTGTCCACTATTGCCAATGTTCGCCA........................................................................... 27 1 2 0.50 1 0 1 0 0 0
................................................................................TGTCCACTATTGCCAATGTTCGCCACGA........................................................................ 28 1 2 0.50 1 0 1 0 0 0
................................................GATAGAATAGCTGTATTGTTGGG............................................................................................................. 23 0 2 0.50 1 1 0 0 0 0
..................................................TAGAATAACTGTATTGTTGGGT............................................................................................................ 22 1 2 0.50 1 1 0 0 0 0
.......................................................................................TATTGCCAATGTTCGCCACGCGACA.................................................................... 25 0 2 0.50 1 1 0 0 0 0
..................................................TACAATAGCTGTATTGTTGGGT............................................................................................................ 22 1 2 0.50 1 1 0 0 0 0
...............................................................................TTGTCCACTATTGCCAATGTTCG.............................................................................. 23 0 2 0.50 1 0 1 0 0 0
..................................................TAGAGTAGCTGTATTGTTGGGTGG.......................................................................................................... 24 1 2 0.50 1 1 0 0 0 0
..................................................TAGAATATCTGTATTGTTGGGTGG.......................................................................................................... 24 1 2 0.50 1 1 0 0 0 0
....................................................................................AACTATTGCCAATGTTCGCCACGCGACA.................................................................... 28 1 2 0.50 1 0 1 0 0 0
.....................................................................................ACTATTGCCAATGTTCGCCACA......................................................................... 22 1 2 0.50 1 0 1 0 0 0
.................................................GTAGAATAGCTGTATTGTTGGGTGG.......................................................................................................... 25 1 2 0.50 1 0 1 0 0 0
................................................................................TGTACACTATTGCCAATGTTCGCCACG......................................................................... 27 1 2 0.50 1 1 0 0 0 0
..................................................TAGAATAGCTGTATTGTTTGGTG........................................................................................................... 23 1 2 0.50 1 1 0 0 0 0
..................................................TAGAATAGCTGTATTGTTTGGTGGG......................................................................................................... 25 1 2 0.50 1 1 0 0 0 0
..................................................TAGAATAGCTGTATTGTTGTGGG........................................................................................................... 23 2 2 0.50 1 0 1 0 0 0
..................................................TAGAATACATGTATTGTTGGGTG........................................................................................................... 23 2 2 0.50 1 1 0 0 0 0
.............................................................................CGTTGTCCACTATTGCCAATGTTCGCC............................................................................ 27 0 2 0.50 1 0 1 0 0 0
..................................................TAGAATAGCTGGATTGTTGGGTGGG......................................................................................................... 25 1 2 0.50 1 0 1 0 0 0
.......................................................TAGCTGTATTGTTGGGTGGGGGC...................................................................................................... 23 0 2 0.50 1 0 1 0 0 0
..................................................TAGAATAGCTGTATTGTTGGGGGGG......................................................................................................... 25 1 2 0.50 1 0 1 0 0 0
..................................................TCGAATAGCTGTATTGTTGGGT............................................................................................................ 22 1 2 0.50 1 1 0 0 0 0
..................................................TAGAATCGCTGTATTGTTGGGT............................................................................................................ 22 1 2 0.50 1 1 0 0 0 0
..................................................TAGAATAGCTGTATTGTTGTGTGGG......................................................................................................... 25 1 2 0.50 1 1 0 0 0 0
.......................................................................................TATTGCCAATGTTCGCCA........................................................................... 18 0 2 0.50 1 0 1 0 0 0
.............................................................................CGTTGTCCACTATTGCCAATGTTCGC............................................................................. 26 0 2 0.50 1 0 1 0 0 0
..................................................TAGAATAGCTGTTTTGTTGGGTGG.......................................................................................................... 24 1 2 0.50 1 1 0 0 0 0
..................................................TAGCATAGCTGTATTGTTGGGT............................................................................................................ 22 1 2 0.50 1 1 0 0 0 0
..............................................................ATTGTTGGGTGGGGGCGTTGTCCATT............................................................................................ 26 1 2 0.50 1 0 1 0 0 0
..................................................TGGAATAGCTGTATTGTTGGGTGG.......................................................................................................... 24 1 2 0.50 1 1 0 0 0 0
..................................................TAGAATAGCTGTGTTGTTGGGTGG.......................................................................................................... 24 1 2 0.50 1 1 0 0 0 0
..................................................TAGAATAGCTGTATTGTTGTG............................................................................................................. 21 1 2 0.50 1 1 0 0 0 0
................................................................................TGTCCACTATTGCCAATGTTCGCCAAAAG....................................................................... 29 3 2 0.50 1 0 1 0 0 0
.................................................................................................................TGGCATGCTGCTGTTTTCCGAAGGGTT........................................ 27 1 10 0.40 4 2 1 1 0 0
................................................................................................................................TTCCGAAGGGTGACTTGTTGTTAG............................ 24 0 8 0.38 3 1 2 0 0 0
..................................................................................................................GGCATGCTGCTGTTTTCCGAAGGG.......................................... 24 0 11 0.36 4 0 4 0 0 0
.............................................................TATTGTTGGGTGGGGGCGT.................................................................................................... 19 0 3 0.33 1 1 0 0 0 0
..................................................TAGAATATCTGCATTGTTGGGT............................................................................................................ 22 2 3 0.33 1 1 0 0 0 0
..................................................TAAAATAGCTGTATTGTTGGG............................................................................................................. 21 1 3 0.33 1 1 0 0 0 0
..................................................TAAAATAGCTGTATTGTTGGGTGG.......................................................................................................... 24 1 3 0.33 1 0 1 0 0 0
.........................................................GCTGTATTGTTGGGTGGGGGC...................................................................................................... 21 0 3 0.33 1 0 1 0 0 0
..................................................TAGAATAGCTGCATTGTTGGGTGGG......................................................................................................... 25 1 3 0.33 1 0 1 0 0 0
..................................................TAGAATAGCTGCATTGTTGGGTG........................................................................................................... 23 1 3 0.33 1 0 1 0 0 0
......................................................................................................................TGCTGCTGTTTTCCGAAGGGTGAC...................................... 24 0 13 0.31 4 4 0 0 0 0
..............................................................................................................CATTGGCATGCTGCTGTTTTCCGAAGG........................................... 27 0 11 0.27 3 1 2 0 0 0
.........................................................................................................CGCGACATTGGCATGCTGCTGTTT................................................... 24 0 11 0.27 3 2 1 0 0 0
................................................................................................................TTGGCATGCTGCTGTTTTCCGAAG............................................ 24 0 13 0.23 3 3 0 0 0 0
......................................................................................................................TGCTGCTGTTTTCCGAAGGG.......................................... 20 0 13 0.23 3 2 1 0 0 0
......................................................................................................................TGCTGCTGTTTTCCGAAGGGTGACTTG................................... 27 0 9 0.22 2 1 1 0 0 0
.........................................................................................................................TGCTGTTTTCCGAAGGGTGACTTG................................... 24 0 9 0.22 2 0 2 0 0 0
.............................TACATTTACTGGTGTTGGAGATA................................................................................................................................ 23 0 5 0.20 1 1 0 0 0 0
..................................TTACTGGTGTTGGAGATAGAGTAGCT........................................................................................................................ 26 1 5 0.20 1 1 0 0 0 0
.............................TACATTTACTGGTGTTGGAGCA................................................................................................................................. 22 2 5 0.20 1 0 1 0 0 0
.............................TACATTTACTGGTGTTGGAGAAA................................................................................................................................ 23 1 5 0.20 1 0 1 0 0 0
..............................ACATTTACTGGTGTTGGAGA.................................................................................................................................. 20 0 5 0.20 1 0 1 0 0 0
.............................TACATTTACTGGTGTTGGAGAAC................................................................................................................................ 23 2 5 0.20 1 1 0 0 0 0
...............................CATTTACTGGTGTTGGAGGTAGAAT............................................................................................................................ 25 1 5 0.20 1 1 0 0 0 0
.............................TACATTTACTGGTGTTGGAGAA................................................................................................................................. 22 1 5 0.20 1 0 1 0 0 0
.............................TACCTTTACTGGTGTTGGAGATAGAAT............................................................................................................................ 27 1 5 0.20 1 1 0 0 0 0
..................................TTACTGGTGTTGGAGATAGAATAGC......................................................................................................................... 25 0 5 0.20 1 0 1 0 0 0
..............................ACATTTACTGGTGTCGGAGATAGA.............................................................................................................................. 24 1 5 0.20 1 0 1 0 0 0
................................................................................................................TTGGCATGCTGCTGTTTTCCGAAGGGTG........................................ 28 0 10 0.20 2 0 2 0 0 0
..................................TTACTGGTGTTGGAGATAGAATAGCTTT...................................................................................................................... 28 1 5 0.20 1 1 0 0 0 0
..................................TTACTGGTGTTGGAGATAGAATAGCTG....................................................................................................................... 27 0 5 0.20 1 1 0 0 0 0
..................................TTACTGGTGTTGGAGATAGAATAG.......................................................................................................................... 24 0 5 0.20 1 1 0 0 0 0
..................................TTACTGGTGTTGGAGATAGAATAGCT........................................................................................................................ 26 0 5 0.20 1 0 1 0 0 0
................................ATTTACTGGTGTTGGAGATAGAATAG.......................................................................................................................... 26 0 5 0.20 1 1 0 0 0 0
...........................................................................................................CGACATTGGCATGCTGCTGTTTTCC................................................ 25 0 10 0.20 2 1 1 0 0 0
.............................TACATTTACTGGTGTTGGA.................................................................................................................................... 19 0 5 0.20 1 0 1 0 0 0
.............................TACATTTACTGGTGTTGGAGT.................................................................................................................................. 21 1 5 0.20 1 1 0 0 0 0
..................................................................................................................GGCATGCTGCTGTTTTCCGAAGGGTG........................................ 26 0 11 0.18 2 1 1 0 0 0
...........................................................................................................CGACATTGGCATGCTGCTGTTTTC................................................. 24 0 11 0.18 2 1 1 0 0 0
...............................................................................................................ATTGGCATGCTGCTGTTTTCCGAAGG........................................... 26 0 11 0.18 2 2 0 0 0 0
........................GCTGGTACATTTGCTGGTG......................................................................................................................................... 19 2 6 0.17 1 0 1 0 0 0
...............................................................................................................................................TGTTGTTAGAGGTGCCTCTTTCGTG............ 25 1 6 0.17 1 1 0 0 0 0
...........................................................................................................................................................TCCCTCTTTCGTGAGCTGGCTGCG. 24 1 6 0.17 1 0 1 0 0 0
................TGAGGGTCGCCGGCACATTTACTGG........................................................................................................................................... 25 1 6 0.17 1 1 0 0 0 0
.............................TACATTTACTGGTGTTGG..................................................................................................................................... 18 0 6 0.17 1 1 0 0 0 0
.................................................................................................................TGGCATGCTGCTGTTTTCCGAAG............................................ 23 0 13 0.15 2 2 0 0 0 0
..............................................................................................................CATTGGCATGCTGCTGTTTTCCGA.............................................. 24 0 13 0.15 2 1 1 0 0 0
..............................................................................................................CATTGGCATGCTGCTGTTTTCCGAA............................................. 25 0 13 0.15 2 1 1 0 0 0
.....................................................................................ACTATTGCCAATGTTCGCC............................................................................ 19 0 7 0.14 1 0 1 0 0 0
...............................................................................................................................................TGTTGTTAGAGGTGCCTCTTTCGT............. 24 1 7 0.14 1 1 0 0 0 0
..................................................TAGAATAGCTGTATTGTTGTTG............................................................................................................ 22 3 7 0.14 1 1 0 0 0 0
..................................................TAGAATAGCTGTATAGTTGGGTGG.......................................................................................................... 24 1 7 0.14 1 1 0 0 0 0
.TCACTGAATTGGGACTGAGGGTCGCC......................................................................................................................................................... 26 1 8 0.13 1 1 0 0 0 0
.............................................................................................................................GTTTTCCGAAGGGTGACTTGTTGT............................... 24 0 8 0.13 1 0 1 0 0 0
...............................................................................................................................TTTCCGAAGGGTGACTTGTTGTTA............................. 24 0 8 0.13 1 0 1 0 0 0
...........................................TTGGAGATAGTTTAGCGGTA..................................................................................................................... 20 3 8 0.13 1 0 1 0 0 0
............................................................................................................................TGTTTTCCGAAGGGTGACTTGTTG................................ 24 0 8 0.13 1 0 1 0 0 0
............................................................................................................................TGTTTTCCGAAGGGTGACTTGTTGT............................... 25 0 8 0.13 1 0 1 0 0 0
.................................ATTACTGGTGGCGGAGATAG............................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0
................................................................................................................................TTCCGAAGGGCGACTTGTTGTTAG............................ 24 1 8 0.13 1 1 0 0 0 0
.................................................................................................................................TCCGAAGGGTGACTTGTTGTTA............................. 22 0 8 0.13 1 1 0 0 0 0
.................................................................................................................................TCCGAAGGGTGACTTGTTGTT.............................. 21 0 8 0.13 1 1 0 0 0 0
...............................................................................................................................TTTCCGAAGGGTGACTTGTTGTTAG............................ 25 0 8 0.13 1 0 1 0 0 0
...............................................................................................................................TTTCCGAAGGGTGACTTGTTGTTAGA........................... 26 1 8 0.13 1 1 0 0 0 0
................................................................................................................................................ATTGTTAGGGGTGCCTCTTT................ 20 2 9 0.11 1 0 1 0 0 0
............................................TGGAGATAGTTTAGCGGTA..................................................................................................................... 19 3 18 0.11 2 0 1 1 0 0
...........................................................................................................CGACATTGGCATGCTGCTGTTTTCCGAT............................................. 28 1 9 0.11 1 0 1 0 0 0
.................................................................TTTGGCTGGGGGCGCTGTCC............................................................................................... 20 3 9 0.11 1 0 0 0 0 1
......................................................................................................................TGCTGCTGTTTTCCGAAGGGTGAAAT.................................... 26 2 9 0.11 1 1 0 0 0 0
................................................................................................................TTGGCATGCTGCTGTCTTCCGAAGGG.......................................... 26 1 10 0.10 1 1 0 0 0 0
..............GGTGGGGGTCGCCGGTTCA................................................................................................................................................... 19 3 10 0.10 1 0 1 0 0 0
.................................................................................................................TGGCATGCTGCGGTTTTCCGAAGGGTG........................................ 27 1 10 0.10 1 0 1 0 0 0
.................................................................................................................TGGCATGCTGCTGTTTTCCGAAGGGTA........................................ 27 1 10 0.10 1 0 1 0 0 0
.................................................................................................................TGGCATGCTGCTGTTTTACGAAGGG.......................................... 25 1 10 0.10 1 1 0 0 0 0
.................................................................................................................TGGCATGCCGCTGTTTTCCGAAGGGT......................................... 26 1 10 0.10 1 0 1 0 0 0
.................................................................................................................TGGCATGCTGCTGTCTTCCGAAGGG.......................................... 25 1 10 0.10 1 1 0 0 0 0
.................................................................................................................TGTCATGCTGCTGTTTTCCGAAGG........................................... 24 1 11 0.09 1 0 1 0 0 0
..................................................................................................................GGCATGCTGCTGTTTTCCGAAGGGTTA....................................... 27 1 11 0.09 1 1 0 0 0 0
..........................................................................................................GCGACATTGGCATGCTGCTGTTT................................................... 23 0 11 0.09 1 0 1 0 0 0
.............................TACATTTACTGGTGTTGGAGAAAA............................................................................................................................... 24 2 11 0.09 1 1 0 0 0 0
.................................................................................................................TGGCATGCTGCTGTTTTCCGAAGGC.......................................... 25 1 11 0.09 1 1 0 0 0 0
...........................................................................................................CGACATTGGCATGCTGCTGT..................................................... 20 0 11 0.09 1 1 0 0 0 0
.............................TACATTTACTGGTGTTGGAGAAAAA.............................................................................................................................. 25 2 11 0.09 1 1 0 0 0 0
..............................................................................................................CATTGGCATGCTGCTGTTTTCCGAAGGA.......................................... 28 1 11 0.09 1 0 1 0 0 0
.................................................................................................................AGGCATGCTGCTGTTTTCCGAAGGG.......................................... 25 1 11 0.09 1 1 0 0 0 0
...........................................................................................................CGACATTGGCATGCTGCTGTTT................................................... 22 0 11 0.09 1 0 1 0 0 0
.................................................................................................................TAGCATGCTGCTGTTTTCCGAAGGGT......................................... 26 1 11 0.09 1 0 1 0 0 0
....................................................................................................................CATGCTGCTGTTTTCCGAAGGGTG........................................ 24 0 12 0.08 1 1 0 0 0 0
....................................................................................................................CATGCTGCTGTTTTCCGAAGGGTGA....................................... 25 0 12 0.08 1 1 0 0 0 0
...........................................TGGGAGATAGTATAGCGGTA..................................................................................................................... 20 3 12 0.08 1 0 1 0 0 0
..................................................................................................................GGCATGCTGCTGTTTTCCGAAGG........................................... 23 0 12 0.08 1 0 1 0 0 0
...................................................................................................................GCATGCTGCTGTTTTCCGAAGGGTG........................................ 25 0 12 0.08 1 1 0 0 0 0
......................................................................................................................TGCTTCTGTTTTCCGAAGGGTGA....................................... 23 1 13 0.08 1 1 0 0 0 0
......................................................................................................................TGCTGCTGTTTTCCGAAGGGTGAT...................................... 24 1 13 0.08 1 1 0 0 0 0
......................................................................................................................TGCTGCTGTTTTCCGAAGGGCGACT..................................... 25 1 13 0.08 1 1 0 0 0 0
........................................................................................................................CTGCTGTTTTCCGAAGGGTGAT...................................... 22 1 13 0.08 1 1 0 0 0 0
..............................................................................................................CATTGGCATGCTGCTGTTTTCCGAAG............................................ 26 0 13 0.08 1 1 0 0 0 0
......................................................................................................................TGCTGATGTTTTCCGAAGGGTGAC...................................... 24 1 13 0.08 1 1 0 0 0 0
.........................................................................................................................TGCTGTTTTCCGAAGGGTGACT..................................... 22 0 13 0.08 1 0 1 0 0 0
...............................................................................................................ATTGGCATGCTGCTGTTTTCCGAAG............................................ 25 0 13 0.08 1 1 0 0 0 0
......................................................................................................................TGCTGCTGTTTTCCGAAGGGCGAC...................................... 24 1 13 0.08 1 1 0 0 0 0
................................................................................................................TTGGCATGCTGCTGTTTTCCGAA............................................. 23 0 13 0.08 1 1 0 0 0 0
...........................GGTACATTTGCTGGTGGT....................................................................................................................................... 18 2 13 0.08 1 0 1 0 0 0
..................................................................................................................GGCATGCTGCTGTTTTCCGAAG............................................ 22 0 14 0.07 1 0 1 0 0 0
........................GCTGGTACATTTGCTGGTGGT....................................................................................................................................... 21 3 15 0.07 1 0 1 0 0 0
...........................................................................................................................TGCTTTTCCGAAGGGTGACT..................................... 20 3 18 0.06 1 0 0 1 0 0
...................................................................................................................ACATGCTGCTGTGTTCCGTA............................................. 20 3 19 0.05 1 0 1 0 0 0
.........................CTGGTACATTTGCTGGTGGT....................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0
................AGAGGGTGTCCGGTACAT.................................................................................................................................................. 18 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

#####################################--------------------------------------------------#############################################################################################
AAGTGACTTAACCCCGACTCCCAGCGGCCATGTAAATGACCACAACCTCTATCTTATCGACATAACAACCCACCCCCGCAACAGGTGATAACGGTTACAAGCGGTGCGCTGTAACCGTACGACGACAAAAGGCTTCCCACTGAACAACAATCACCACGGAGAAAGCACTCGACCGACGCT
**********************************************************.....................((((((..(((((.((((((((((((...........)))))))).)))).)))))...))).)))*********************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body
.....................................GACCACAACCTCTATCTTATCGA........................................................................................................................ 23 0 5 4.80 24 23 1 0
................................................................................................................AACCGTACGACGACAAAAGGCTTCCCA......................................... 27 0 10 2.20 22 20 2 0
......................................................................................GATAACGGTTACAAGCGGTGCGCTGT.................................................................... 26 0 2 1.50 3 3 0 0
....................................TGACCACAACCTCTATCTTATCGA........................................................................................................................ 24 0 5 1.40 7 4 3 0
...................................................................................GGTGATAACGGTTACAAGCGGTGCGCT...................................................................... 27 0 2 1.00 2 2 0 0
....................................................................................................................GTACGACGACAAAAGGCTTCCCA......................................... 23 0 12 0.83 10 10 0 0
...................................................................................................................CGTACGACGACAAAAGGCTTCCCA......................................... 24 0 12 0.75 9 9 0 0
..................................................................................................................CCGTACGACGACAAAAGGCTTCCCA......................................... 25 0 11 0.55 6 6 0 0
..................................................................................AGGTGATAACGGTTACAAGCGGTGC......................................................................... 25 0 2 0.50 1 1 0 0
........................................................................................TAACGGTTACAAGCGGTGCGCTGT.................................................................... 24 0 2 0.50 1 0 1 0
..................................................................................AGGTGATAACGGTTACAAGC.............................................................................. 20 0 2 0.50 1 1 0 0
....................................................................CCCACCCCCGCAACAGGTGATAACGGT..................................................................................... 27 0 2 0.50 1 1 0 0
............................................................................CGCAACAGGTGATAACGGTTA................................................................................... 21 0 2 0.50 1 1 0 0
.....................................................................................TGATAACGGTTACAAGCGGTGCGCT...................................................................... 25 0 2 0.50 1 1 0 0
.............................................................................GCAACAGGTGATAACGGTTACAAGCGGT........................................................................... 28 0 2 0.50 1 1 0 0
................................................................ACAACCCACCCCCGCAACAGGTGAT........................................................................................... 25 0 2 0.50 1 1 0 0
...................................................................................GGTGATAACGGTTACAAGCGGT........................................................................... 22 0 2 0.50 1 1 0 0
..................................................................................AGGTGATAACGGTTACAAG............................................................................... 19 0 2 0.50 1 1 0 0
......................................................................................................GGTGCGCTGTAACCGTACGAC......................................................... 21 0 2 0.50 1 0 1 0
.........................................................................CCCCGCAACAGGTGATAACGGTTACAA................................................................................ 27 0 2 0.50 1 1 0 0
.....................................................................................TGATAACGGTTACAAGCGGTGCGC....................................................................... 24 0 2 0.50 1 1 0 0
........................................CACAACCTCTATCGTATCGACATAA................................................................................................................... 25 1 2 0.50 1 1 0 0
.........................................................................CCCCGCAACAGGTGATAACGGTTACAAGC.............................................................................. 29 0 2 0.50 1 1 0 0
............................................................CATAACAACCCACCCCCGCAACAGGTGAT........................................................................................... 29 0 2 0.50 1 1 0 0
....................................................................................GTGATAACGGTTACAAGCGGTGCGC....................................................................... 25 0 2 0.50 1 0 1 0
....................................................................................GTGATAACGGTTACAAGCGGTGCCT....................................................................... 25 2 2 0.50 1 0 1 0
...............................................................................................TACAAGCGGTGCGCTGTAACCGTACG........................................................... 26 0 2 0.50 1 1 0 0
................................................................................ACAGGTGATAACGGTTACAAGCGGT........................................................................... 25 0 2 0.50 1 0 1 0
...............................GTAAATGACCACAACCTCTATCTTATCGA........................................................................................................................ 29 0 5 0.40 2 2 0 0
.................................AAATGACCACAACCTCTATCTTATCGA........................................................................................................................ 27 0 5 0.40 2 2 0 0
.................................................................................................................ACCGTACGACGACAAAAGGCTTCCCA......................................... 26 0 10 0.40 4 4 0 0
................................................................................................................AACCGTACGACGACAAAAGGCTTCCC.......................................... 26 0 10 0.40 4 4 0 0
.................................................................CAACCCACCCCCGCAACAGGTGAT........................................................................................... 24 0 3 0.33 1 1 0 0
.....................................................................CCACCCCCGCAACAGGTGAT........................................................................................... 20 0 3 0.33 1 1 0 0
.............................................CCTCTCTCTTATCGGCATAACT................................................................................................................. 22 3 3 0.33 1 1 0 0
...................................................................ACCCACCCCCGCAACAGGTGATA.......................................................................................... 23 0 3 0.33 1 1 0 0
....................................................................CCCACCCCCGCAACAGGTGATA.......................................................................................... 22 0 3 0.33 1 1 0 0
.....................................................................................................................TACGACGACAAAAGGCTTCCCA......................................... 22 0 13 0.23 3 2 1 0
..............................................................................................................GTAACCGTACGACGACAAAAGGCTTCCCA......................................... 29 0 10 0.20 2 2 0 0
.....................................GACCACAACCTCTATCTTATCG......................................................................................................................... 22 0 5 0.20 1 1 0 0
........................................CACAACCTCTATCTTATCGA........................................................................................................................ 20 0 5 0.20 1 1 0 0
......................................ACCACAACCTCTATCTTATCGA........................................................................................................................ 22 0 5 0.20 1 1 0 0
..................................AATGACCACAACCTCTATCTTATCGA........................................................................................................................ 26 0 5 0.20 1 0 1 0
..............................................................................................................GTAACCGTACGACGACAAAAGGCTTCCC.......................................... 28 0 10 0.20 2 2 0 0
...................................ATGACCACAACCTCTATCTTATCGA........................................................................................................................ 25 0 5 0.20 1 1 0 0
.................................................................................................................ACCGTACGACGACAAAAGGCTTCCC.......................................... 25 0 10 0.20 2 2 0 0
.....................................GACCACAACCTCTATCTTA............................................................................................................................ 19 0 5 0.20 1 1 0 0
.............................................................................................................................................................GGAGAAAGCACTCGACCGACGCT 23 0 5 0.20 1 0 1 0
................................................................................................................AACCGTACGACGACAAAAGGCTTCC........................................... 25 0 11 0.18 2 2 0 0
..................................................................................................................CCGTACGACGACAAAAGGCTTCCC.......................................... 24 0 11 0.18 2 2 0 0
.................CTCCCAGCGGCCATGTAAATGA............................................................................................................................................. 22 0 6 0.17 1 1 0 0
................ACTCCCAGCGGCCATGTAAATGACC........................................................................................................................................... 25 0 6 0.17 1 1 0 0
.............................................................................................................TGTAACCGTACGACGACAAAAGGCTT............................................. 26 0 13 0.15 2 2 0 0
...........................................................................................................................GACAAAAGGCTTCCCACTGAACAACAAT............................. 28 0 8 0.13 1 1 0 0
..........................................................................................................................CGACAAAAGGCTTCCCACTGAACAAC................................ 26 0 8 0.13 1 0 0 1
..........................................................................................................CGCTGTAACCGTACGACGACAAAAGGCT.............................................. 28 0 9 0.11 1 1 0 0
................................................................................................................AACCGTACGACGACAGAAGGCTTCCCA......................................... 27 1 10 0.10 1 1 0 0
..........................................................................................................CGCTGTAACCGTACGACGACAAA................................................... 23 0 11 0.09 1 1 0 0
..............................................................................................................GTAACCGTACGACGACAAAAGGCTTCC........................................... 27 0 11 0.09 1 1 0 0
....................................................................................................................GTACGACTACAAAAGGCTTCCCA......................................... 23 1 12 0.08 1 1 0 0
..................................................................................................................CCGTACGACGACAAAAGGCTTCC........................................... 23 0 12 0.08 1 1 0 0
...................................................................................................................CGTACAACGACAAAAGGCTTCCC.......................................... 23 1 12 0.08 1 1 0 0
.................................................................................................................ACCGTACGACGACAAAAGGCTTC............................................ 23 0 13 0.08 1 1 0 0
....................................................................................................................TTACGACGACAAAAGGCTTCCCACT....................................... 25 1 13 0.08 1 1 0 0
......................................................................................................................ACGACGACAAAAGGCTTCCCA......................................... 21 0 13 0.08 1 1 0 0
......................................................................................................................ACGACGACAAAAGGCTTCCCACT....................................... 23 0 13 0.08 1 1 0 0
.................................................................................................................ACCGTACGACGACAAAAGGCTT............................................. 22 0 13 0.08 1 1 0 0
...................................................................................................................CGTACGACGACAAAAGGCTTC............................................ 21 0 15 0.07 1 1 0 0
.............................................................................................................TGTAACCGTACGACGACAAAAA................................................. 22 1 15 0.07 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004887:450410-450589 + dwi_176 TTCACTGAATTGGGGCTGAGGGTCGCCGGTACATTTACTGGTGTT-----------------GGA--GATAGAATAGCTGTATTGTTGGGTGGGGGCGTTGTCCACTATTGCCAATGTTCGCCACGCGACATTGGCATGCTGCTGTTTTCCGAAGGGTGACTTGTTGTTAGTGGTGCCTCTTTCGT---GAGCTGGCTG---CGA
droKik1 scf7180000302642:2123-2321 - TCCAGTAATCCGGGATTGAGGGCGAGCTGGATATGTGCGGCGGTTGTTTGGCCACCGATGAGGAATGGGGGGAGTGAGCACA-CGCTGGCTGGGGCAGTCGGTGTTGGCTGTCAACCTCCGCCCCGAGAGGTTAACGGCAGCTAGTTTCC-CGAGGACGACACGGAATT-CCGGAATCTCCGGGGT---GCGCCGACGGGATCGT
droTak1 scf7180000414409:48876-48988 - G-----------------------------------------------------------------------------------------TGGGGCTGTTGGGACTGGTGGCCAACCTCCGCCCCGAGAGGCTGGCGGCATTTAGTTTCCCGCTTGGTTAGTAGGAGGTGGGGGTGACTCTGGACTAGCACGCCCATTC---CGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TTCACTGAATTGGGGCTGAGGGTCGCCGGTACATTTACTGGTGTT-----------------GGA--GATAGAATAGCTGTATTGTTGGGTGGGGGCGTTGTCCACTATTGCCAATGTTCGCCACGCGACATTGGCATGCTGCTGTTTTCCGAAGGGTGACTTGTTGTTAGTGGTGCCTCTTTCGT---GAGCTGGCTG---CGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................TAGAATAGCTGTATTGTTGGGTGG................................................................................................................242286.00572015574091
.....................................................................TAGAATAGCTGTATTGTTGGGT..................................................................................................................222190.5038102723520
.....................................................................TAGAATAGCTGTATTGTTGGGTGGG...............................................................................................................252164.5032919932251
.....................................................................TAGAATAGCTGTATTGTTGGGTG.................................................................................................................232150.5030106132361
.....................................................................TAGAATAGCTGTATTGTTGGG...................................................................................................................21262.0012401431070
.....................................................................TAGAATAGCTGTATTGTTGGGTGGGG..............................................................................................................26250.501010731270
...................................................................................................TGTCCACTATTGCCAATGTTCGCCACG...............................................................................27221.50430300130
.....................................................................TAGAATAGCTGTATTGTTGG....................................................................................................................20215.5031091210
.....................................................................TAGAATAGCTGTATTGTTGGGTGGGGG.............................................................................................................27214.5029123500
...................................................................................................TGTCCACTATTGCCAATGTTCGCCA.................................................................................25211.0022022000
....................................................................................................................................TGGCATGCTGCTGTTTTCCGAAGGG................................................25107.10710470240
......................................................................AGAATAGCTGTATTGTTGGGTGG................................................................................................................2326.5013012010
.............................TACATTTACTGGTGTT-----------------GGA--GA........................................................................................................................................2155.60280120160
..........................................................................................................TATTGCCAATGTTCGCCACGCGACAT.........................................................................2625.0010010000
..................................................................................................TTGTCCACTATTGCCAATGTTCGCC..................................................................................2524.50907020
...................................................................................................TGTCCACTATTGCCAATGTTCGCCAC................................................................................2624.50907020
...................................................................................................TGTCCACTATTGCCAATGTTCGCCACGC..............................................................................2824.50908010
..........................................................................TAGCTGTATTGTTGGGTGGG...............................................................................................................2024.50900090
..........................................................................TAGCTGTATTGTTGGGTGGGG..............................................................................................................2124.50901071
...................................................................................................TGTCCACTATTGCCAATGTTCGCC..................................................................................2424.50908010
....................................................................................................................................TGGCATGCTGCTGTTTTCCGAAGG.................................................24114.09450200250
......................................................................AGAATAGCTGTATTGTTGGGTGGG...............................................................................................................2423.50707000
.....................................................................TAGAATAGCTGTATTGTTGGGTGGGT..............................................................................................................2623.50701060
.............................TACATTTACTGGTGTT-----------------GGA--GATAGAA...................................................................................................................................2653.201607081
....................................................................................................GTCCACTATTGCCAATGTTCGCCACG...............................................................................2623.00606000
...................................................................................................................................TTGGCATGCTGCTGTTTTCCGAAGGG................................................26102.90290120170
.............................TACATTTACTGGTGTT-----------------GGA--GATAGA....................................................................................................................................2552.6013010120
..................................................................................................TTGTCCACTATTGCCAATGTTCGCCA.................................................................................2622.50505000
.....................................................................TAGAATAGCTGTATTGTTGGGTGGTA..............................................................................................................2622.00401120
......................................................................AGAATAGCTGTATTGTTGGGTG.................................................................................................................2222.00403010
.....................................................................TAGAATAGCTGTATTGTTGGGTGGT...............................................................................................................2522.00400040
................TGAGGGTCGCCGGTACATTTACTGG....................................................................................................................................................................2562.0012000120
....................................................................................................................................TGGCATGCTGCTGTTTTCCGAAGGGT...............................................26102.0020015050
..................................................................................................TTGTCCACTATTGCCAATGTTCGC...................................................................................2422.00403010
.............................TACATTTACTGGTGTT-----------------GGA--GATAGAAT..................................................................................................................................2751.60800080
............................................T-----------------GGA--GATAGAATAGCTGTATTGTTGG....................................................................................................................2621.50301020
..................................................................................................TTGTCCACTATTGCCAATGTTCGCCACG...............................................................................2821.50303000
.....................................................................................................TCCACTATTGCCAATGTTCGCCACGCG.............................................................................2721.50303000
..........................................................................TAGCTGTATTGTTGGGTGG................................................................................................................1921.50301020
......................................................................AGAATAGCTGTATTGTTGGGT..................................................................................................................2121.50303000
.....................................................................TAGAATAGCTGTATTGTTGGGTGT................................................................................................................2421.50300030
....................................................................ATAGAATAGCTGTATTGTTGGGTG.................................................................................................................2421.50300030
...................................................................................................TGTCCACTATTGCCAATGTTCGC...................................................................................2321.50303000
..........................................................................TAGCTGTATTGTTGGGTGGGGG.............................................................................................................2221.50301110
.............................TACATTTACTGGTGTT-----------------GGA--GATAG.....................................................................................................................................2451.40701060
TTCACTGAATTGGGGCTGAGGGTCGC...................................................................................................................................................................................2611.00100010
.....................................................................TAGAATAGCTGTATTGTTGGGA..................................................................................................................2221.00200020
........................................................................AATAGCTGTATTGTTGGGTGGG...............................................................................................................2221.00200020
.....................................................................TAGAATAGCTGTATTGTTGGGTT.................................................................................................................2321.00200020
...................................................................................................TGTCCACTATTGCCAATGTTCGCCACGCG.............................................................................2921.00202000
..................................................................................................................................................................TGTTGTTAGTGGTGCCTCTTTCGT---G...............2511.00100010
..........................................................................TAGCTGTATTGTTGGGTG.................................................................................................................1821.00200020
..............................................................................................................................................................................TGCCTCTTTCGT---GAGCTGGCTG---CGA2551.00505000
...........................................................................AGCTGTATTGTTGGGTGGGGG.............................................................................................................2121.00200020
.....................................................................................................TCCACTATTGCCAATGTTCGCCACGCGA............................................................................2821.00202000
.....................................................................TAGAATAGCTGTATTGTTGGGTGGGGT.............................................................................................................2721.00202000
......................................................................................................CCACTATTGCCAATGTTCGCCACGCGA............................................................................2721.00202000
......................................................................AGAATAGCTGTATTGTTGGGTGGGGG.............................................................................................................2621.00202000
......................................................................................................................TCGCCACGCGACATTGGCATGCTGC..............................................................2521.00202000
.........................................................................................................................................TGCTGCTGTTTTCCGAAGGGTGA.............................................23130.851101190
.............................TACATTTACTGGTGTT-----------------GGA--G.........................................................................................................................................2050.80402020
...................................................................................................................................TTGGCATGCTGCTGTTTTCCGAAGG.................................................25110.73801070
...................................................................................................................................TTGGCATGCTGCTGTTTTCCGAAGGGT...............................................27100.70705020
.........................................................................................................................................TGCTGCTGTTTTCCGAAGGGTGACT...........................................25130.69903060
...................................TACTGGTGTT-----------------GGA--GATAGAATAGCTG.............................................................................................................................2650.60300030
.................................TTTACTGGTGTT-----------------GGA--GATAGAATAGC...............................................................................................................................2650.60300030
....................................................................................................................................TGGCATGCTGCTGTTTTCCGAAGGGTG..............................................27100.60604020
.........................................................................................................................................TGCTGCTGTTTTCCGAAGGGTGACTT..........................................2690.56502030
....................................................................................................GTCCACTATTGCCAATGTTCGCCACGCG.............................................................................2820.50101000
................................................................................................CGTTGTCCACTATTGCCAATGTTCGCCA.................................................................................2820.50101000
.....................................................................................................TCCACTATTGCCAATGTTCGCCACG...............................................................................2520.50100010
......................................................................AGAATAGCTGTATTGTTGGG...................................................................................................................2020.50101000
................................................................................................CGTTGTCCACTATTGCCAATGTTCG....................................................................................2520.50101000
.....................................................................TAGAATAGCTGTATTGTTGGGTGGTT..............................................................................................................2620.50100001
.........................................................................ATAGCTGTATTGTTGGGTGG................................................................................................................2020.50101000
......................................................................AGAATAGCTGTATTGTTGGGTGGGG..............................................................................................................2520.50101000
...................................................................................................TGTCCACTATTGCCAATGTTCGCCACGTT.............................................................................2920.50101000
..................................................................................................TTGTCCACTATTGCCAATGTTCGCCAC................................................................................2720.50101000
.....................................................................TAGAATAGCTGTATTGTTGGGTA.................................................................................................................2320.50100010
................................................................................TATTGTTGGGTGGGGGCGTTGTCC.....................................................................................................2420.50101000
.......................................................................................................CACTATTGCCAATGTTCGCCACGCGACA..........................................................................2820.50101000
......................................................................................................................TCGCCACGCGACATTGGCATGCTGCTGT...........................................................2820.50100010
.................................................................................................GTTGTCCACTATTGCCAATGTTCGC...................................................................................2520.50101000
.....................................................................TAGAATAGCTGTATTGTTGGGTGGGA..............................................................................................................2620.50101000
......................................................................................TGGGTGGGGGCGTTGTCCACTATTGC.............................................................................................2620.50100100
.................................................................................................GTTGTCCACTATTGCCAATGTTCGCCA.................................................................................2720.50101000
.........................................................................................................CTATTGCCAATGTTCGCCACG...............................................................................2120.50101000
.....................................................................TAGAATAGCTGTATTGTT......................................................................................................................1820.50101000
...........................................................................................................ATTGCCAATGTTCGCCACGCGACAT.........................................................................2520.50101000
...........................................................................................................ATTGCCAATGTTCGCCACG...............................................................................1920.50100010
.........................................................................................................CTATTGCCAATGTTCGCCACGCGACAT.........................................................................2720.50101000
...................................................................................................TGTCCACTATTGCCAATGTTCGCCACT...............................................................................2720.50101000
.....................................................................TAGAATAGCTGTATTGTTG.....................................................................................................................1920.50100010
.....................................................................TAGAATAGCTGTATTGTTGGGTGA................................................................................................................2420.50100010
.....................................................................................................TCCACTATTGCCAATGTTCGCCACGCGAC...........................................................................2920.50110000
.....................................................................TAGAATAGCTGTATTGTTGGGTGGGTA.............................................................................................................2720.50101000
.....................................................................TAGAATAGCTGTATTGTTGGGTGGTTT.............................................................................................................2720.50100010
.................................................................................................GTTGTCCACTATTGCCAATGTTCGCC..................................................................................2620.50101000
............................................................................................................TTGCCAATGTTCGCCACGCGACATTGG......................................................................2720.50100010
...........................................................................................................................ACGCGACATTGGCATGCTGCTGTT..........................................................2420.50101000
....................................................................................................GTCCACTATTGCCAATGTTCGCCA.................................................................................2420.50101000
...................................................................................................TGTCCACTATTGCCAATGTTCGCCACGA..............................................................................2820.50101000
...................................................................GATAGAATAGCTGTATTGTTGGG...................................................................................................................2320.50100010
..........................................................................................................TATTGCCAATGTTCGCCACGCGACA..........................................................................2520.50100010
..................................................................................................TTGTCCACTATTGCCAATGTTCG....................................................................................2320.50101000
........................................................................................................ACTATTGCCAATGTTCGCCACA...............................................................................2220.50101000
................................................................................................CGTTGTCCACTATTGCCAATGTTCGCC..................................................................................2720.50101000
..........................................................................TAGCTGTATTGTTGGGTGGGGGC............................................................................................................2320.50101000
..........................................................................................................TATTGCCAATGTTCGCCA.................................................................................1820.50101000
................................................................................................CGTTGTCCACTATTGCCAATGTTCGC...................................................................................2620.50101000
....................................................................................................................................TGGCATGCTGCTGTTTTCCGAAGGGTT..............................................27100.40401120
...................................................................................................................................................TTCCGAAGGGTGACTTGTTGTTAG..................................2480.38302010
.....................................................................................................................................GGCATGCTGCTGTTTTCCGAAGGG................................................24110.36404000
................................................................................TATTGTTGGGTGGGGGCGT..........................................................................................................1930.33100010
............................................................................GCTGTATTGTTGGGTGGGGGC............................................................................................................2130.33101000
.........................................................................................................................................TGCTGCTGTTTTCCGAAGGGTGAC............................................24130.31400040
.................................................................................................................................CATTGGCATGCTGCTGTTTTCCGAAGG.................................................27110.27302010
............................................................................................................................CGCGACATTGGCATGCTGCTGTTT.........................................................24110.27301020
...................................................................................................................................TTGGCATGCTGCTGTTTTCCGAAG..................................................24130.23300030
.........................................................................................................................................TGCTGCTGTTTTCCGAAGGG................................................20130.23301020
.........................................................................................................................................TGCTGCTGTTTTCCGAAGGGTGACTTG.........................................2790.22201010
............................................................................................................................................TGCTGTTTTCCGAAGGGTGACTTG.........................................2490.22202000
.............................TACATTTACTGGTGTT-----------------GGA--GATA......................................................................................................................................2350.20100010
.............................TACATTTACTGGTGTT-----------------GGA--GCA.......................................................................................................................................2250.20101000
..............................ACATTTACTGGTGTT-----------------GGA--GA........................................................................................................................................2050.20101000
.............................TACATTTACTGGTGTT-----------------GGA--GAAC......................................................................................................................................2350.20100010
.............................TACATTTACTGGTGTT-----------------GGA--GAA.......................................................................................................................................2250.20101000
..................................TTACTGGTGTT-----------------GGA--GATAGAATAGC...............................................................................................................................2550.20101000
...................................................................................................................................TTGGCATGCTGCTGTTTTCCGAAGGGTG..............................................28100.20202000
..................................TTACTGGTGTT-----------------GGA--GATAGAATAGCTG.............................................................................................................................2750.20100010
..................................TTACTGGTGTT-----------------GGA--GATAGAATAG................................................................................................................................2450.20100010
..................................TTACTGGTGTT-----------------GGA--GATAGAATAGCT..............................................................................................................................2650.20101000
................................ATTTACTGGTGTT-----------------GGA--GATAGAATAG................................................................................................................................2650.20100010
..............................................................................................................................CGACATTGGCATGCTGCTGTTTTCC......................................................25100.20201010
.............................TACATTTACTGGTGTT-----------------GGA--..........................................................................................................................................1950.20101000
.............................TACATTTACTGGTGTT-----------------GGA--GT........................................................................................................................................2150.20100010
.....................................................................................................................................GGCATGCTGCTGTTTTCCGAAGGGTG..............................................26110.18201010
..............................................................................................................................CGACATTGGCATGCTGCTGTTTTC.......................................................24110.18201010
..................................................................................................................................ATTGGCATGCTGCTGTTTTCCGAAGG.................................................26110.18200020
.............................TACATTTACTGGTGTT-----------------GG.............................................................................................................................................1860.17100010
....................................................................................................................................TGGCATGCTGCTGTTTTCCGAAG..................................................23130.15200020
.................................................................................................................................CATTGGCATGCTGCTGTTTTCCGA....................................................24130.15201010
.................................................................................................................................CATTGGCATGCTGCTGTTTTCCGAA...................................................25130.15201010
........................................................................................................ACTATTGCCAATGTTCGCC..................................................................................1970.14101000
.....................................................................TAGAATAGCTGTATTGTTGTTG..................................................................................................................2270.14100010
................................................................................................................................................GTTTTCCGAAGGGTGACTTGTTGT.....................................2480.13101000
..................................................................................................................................................TTTCCGAAGGGTGACTTGTTGTTA...................................2480.13101000
...............................................................................................................................................TGTTTTCCGAAGGGTGACTTGTTG......................................2480.13101000
...............................................................................................................................................TGTTTTCCGAAGGGTGACTTGTTGT.....................................2580.13101000
....................................................................................................................................................TCCGAAGGGTGACTTGTTGTTA...................................2280.13100010
....................................................................................................................................................TCCGAAGGGTGACTTGTTGTT....................................2180.13100010
..................................................................................................................................................TTTCCGAAGGGTGACTTGTTGTTAG..................................2580.13101000
..................................................................................................................................................TTTCCGAAGGGTGACTTGTTGTTAGA.................................2680.13100010
..............................................................................................................................CGACATTGGCATGCTGCTGTTTTCCGAT...................................................2890.11101000
....................................................................................................................................TGGCATGCTGCTGTTTTCCGAAGGGTA..............................................27100.10101000
.............................................................................................................................GCGACATTGGCATGCTGCTGTTT.........................................................23110.09101000
....................................................................................................................................TGGCATGCTGCTGTTTTCCGAAGGC................................................25110.09100010
..............................................................................................................................CGACATTGGCATGCTGCTGT...........................................................20110.09100010
.................................................................................................................................CATTGGCATGCTGCTGTTTTCCGAAGGA................................................28110.09101000
..............................................................................................................................CGACATTGGCATGCTGCTGTTT.........................................................22110.09101000
.......................................................................................................................................CATGCTGCTGTTTTCCGAAGGGTG..............................................24120.08100010
.......................................................................................................................................CATGCTGCTGTTTTCCGAAGGGTGA.............................................25120.08100010
.....................................................................................................................................GGCATGCTGCTGTTTTCCGAAGG.................................................23120.08101000
......................................................................................................................................GCATGCTGCTGTTTTCCGAAGGGTG..............................................25120.08100010
.........................................................................................................................................TGCTGCTGTTTTCCGAAGGGTGAT............................................24130.08100010
...........................................................................................................................................CTGCTGTTTTCCGAAGGGTGAT............................................22130.08100010
.................................................................................................................................CATTGGCATGCTGCTGTTTTCCGAAG..................................................26130.08100010
............................................................................................................................................TGCTGTTTTCCGAAGGGTGACT...........................................22130.08101000
..................................................................................................................................ATTGGCATGCTGCTGTTTTCCGAAG..................................................25130.08100010
...................................................................................................................................TTGGCATGCTGCTGTTTTCCGAA...................................................23130.08100010
.....................................................................................................................................GGCATGCTGCTGTTTTCCGAAG..................................................22140.07101000
droKik1
TCCAGTAATCCGGGATTGAGGGCGAGCTGGATATGTGCGGCGGTTGTTTGGCCACCGATGAGGAATGGGGGGAGTGAGCACA-CGCTGGCTGGGGCAGTCGGTGTTGGCTGTCAACCTCCGCCCCGAGAGGTTAACGGCAGCTAGTTTCC-CGAGGACGACACGGAATT-CCGGAATCTCCGGGGT---GCGCCGACGGGATCGTSizeHit CountTotal NormTotal
No Reads
droTak1
G-----------------------------------------------------------------------------------------TGGGGCTGTTGGGACTGGTGGCCAACCTCCGCCCCGAGAGGCTGGCGGCATTTAGTTTCCCGCTTGGTTAGTAGGAGGTGGGGGTGACTCTGGACTAGCACGCCCATTC---CGGSizeHit CountTotal NormTotal
No Reads

Generated: 05/15/2015 at 02:57 PM