ID:

dwi_175

 Coordinate:

scf2_1100000004909:2934973-2935043 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-30.7 -30.6 -30.5

Flybase annnotation

Antisense to intron [Dwil\GK25559-in]

No Repeatable elements found

mature
  1. scf2_1100000004511:9685219-9685237 +
  2. scf2_1100000004512:1567043-1567061 -
  3. dwi_175  scf2_1100000004909:2935025-2935043 -
  4. scf2_1100000004909:3905285-3905303 +
star

Sense Strand Reads

TTCCAAAACCAATATTAAAAATTTTAAGTCCCTTTATGAGTGGTGCCTCAGGTGGTGGGTGGGTGGTTGTTTTACGAGTACCTGTGTGGGTGTGTGTGTGTGCAACCATAACCACATTTAGAGGGTTGGGGTAAAGGGTTATTTTGGCTACCTAAAATTTTCACCATTTTT
***********************************........((((((((..(((((((..((((((((..((((..(((((....)))))..))))...)))))))).))).)))).......))))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 V117
male body		 V119
head
 M045
female body
..................................................GGTGGTGGGTGGGTGGTTG...................................................................................................... 19 0 4 3.25 13 13 0 0 0
...................................................GTGGTGGGTGGGTGGTTG...................................................................................................... 18 0 11 1.00 11 3 3 2 3
.................................................................GTTGTTTTACGAGTAATTGT...................................................................................... 20 2 1 1.00 1 0 1 0 0
......................................................................................................................TAGTGGGATGCGGTAAAGGGTT............................... 22 3 2 0.50 1 0 0 0 1
...................................................GTGGTGGGTGGGTGGTTGTTA................................................................................................... 21 1 2 0.50 1 0 0 1 0
..................................................GGTGGTGGGTGGGTGGTT....................................................................................................... 18 0 5 0.20 1 0 0 1 0
..................................................GGTGGTGTGTGGGTGGTTG...................................................................................................... 19 1 6 0.17 1 1 0 0 0
....................................................................GTTTTACGAGTGCTTGTG..................................................................................... 18 2 9 0.11 1 0 1 0 0
...................................................GTGGTGGTTGGGTGGTTGT..................................................................................................... 19 1 11 0.09 1 0 0 0 1
...................................................GTGGTGGGTGGGTGGTTGA..................................................................................................... 19 1 12 0.08 1 0 1 0 0
..................................................GGTGGTGGGTGGGAAGTTG...................................................................................................... 19 2 17 0.06 1 0 0 1 0
.....................................................GGTGGGTGGGTGGTGGTT.................................................................................................... 18 1 20 0.05 1 0 0 0 1

Anti-sense strand reads

AAGGTTTTGGTTATAATTTTTAAAATTCAGGGAAATACTCACCACGGAGTCCACCACCCACCCACCAACAAAATGCTCATGGACACACCCACACACACACACGTTGGTATTGGTGTAAATCTCCCAACCCCATTTCCCAATAAAACCGATGGATTTTAAAAGTGGTAAAAA
***********************************........((((((((..(((((((..((((((((..((((..(((((....)))))..))))...)))))))).))).)))).......))))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total V119
head
 M020
head
 M045
female body
....................................................................................................ACGTTGGGATTGGTATACATC.................................................. 21 3 3 0.33 1 0 1 0
........................................ACCACGGAGGCCACTCCCCAC.............................................................................................................. 21 3 3 0.33 1 1 0 0
....................................................................................................ATGTTGGGATTGGTATAAATC.................................................. 21 3 4 0.25 1 1 0 0
............................................................................TCATGGACACAGCCAAACGC........................................................................... 20 3 4 0.25 1 0 0 1
...................................................................ACAAAATGGTCATGGATAA..................................................................................... 19 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004909:2934923-2935093 - dwi_175 TTCCAAAACCAATATTAAAAATTTTAAGTCCCTTTATGAGTGGTGCCTCAGGTGGTGGGTGGGTGGTTGTTTTACGAGTACCTGTGTGGGTGTGTGTGTGTGCAACCATAACCACATTTAGAGGGTTGGGGTAAAGGGTTATTTTGGCTACCTAAAATTTTCACCATTTTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TTCCAAAACCAATATTAAAAATTTTAAGTCCCTTTATGAGTGGTGCCTCAGGTGGTGGGTGGGTGGTTGTTTTACGAGTACCTGTGTGGGTGTGTGTGTGTGCAACCATAACCACATTTAGAGGGTTGGGGTAAAGGGTTATTTTGGCTACCTAAAATTTTCACCATTTTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................GGTGGTGGGTGGGTGGTTG......................................................................................................1943.2513000130
...................................................GTGGTGGGTGGGTGGTTG......................................................................................................18111.001103332
...................................................GTGGTGGGTGGGTGGTTGTTA...................................................................................................2120.50100001
..................................................GGTGGTGGGTGGGTGGTT.......................................................................................................1850.20100001
...................................................GTGGTGGGTGGGTGGTTGA.....................................................................................................19120.08100100

Generated: 05/15/2015 at 02:56 PM