dwi_1726

CDS [Dwil\GK24226-cds]; exon [dwil_GLEANR_8360:1]; exon [dwil_GLEANR_8360:2]; CDS [Dwil\GK24226-cds]; intron [Dwil\GK24226-in]

--------------------------########################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AACTGAAAGACATCTTTTCAACAAACATGGGCAAAGCATCCGAGGCAAATGTGAGTAAAAATAGAATACCATCACAAATTTATTCAATAGCCGATTAAAAATTTAATGGCACTGATTTTACCAGGATCATCTTTTGTCCAGATTTATTTAAATTCAAGATGGAAAAATTGGATCGAGTCATTCGTTTGATGTGGCTGCCTCAACAAAAGGCGTCTCCGCGTTCCTTAATGGCAATAAGTTGTCTGGGGAAAATTTTAACATTGATTTGCATATTAAGAATCATGACAGTGATTCGGGCCAGCCAATTAAGGTGGTCTACGAGGCCTG ************************************************.((((((((....((......)).....))))))))...(((.(((((....))))))))..(((((((...)))))))..((((.(((((((..(((((.((((((..........))))))...((((((.....(((((((.(((((.......)))))...)))))))....))))))..))))).))))))).))))........(((((......))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V118 embryo	M045 female body	V117 male body	V119 head
........................ACATGGGCAAAGCATCCGAGGCA........................................................................................................................................................................................................................................................................................	23	0	2	0.50	1	1	0	0	0
.......................AACATGGGCAAAGCATCCGAGG..........................................................................................................................................................................................................................................................................................	22	0	2	0.50	1	1	0	0	0
.......................AACATGGGCAAAGCATCCGAGGC.........................................................................................................................................................................................................................................................................................	23	0	2	0.50	1	0	0	0	1
.............................................................................................................................................................................................TGTGGCTGCCTCAACAAAAGGCGT..................................................................................................................	24	0	2	0.50	1	0	0	1	0
.....................................................................................................................................................................................................................................................................TGATTTGCATATTAAGAAT...............................................	19	0	2	0.50	1	1	0	0	0
...............................................................................................TAAAAATTTAATCGCAGTAATT..................................................................................................................................................................................................................	22	3	14	0.43	6	0	6	0	0
..........................................................................................................................................................................................................................................................AATTATAACATTGATTTGCATTC......................................................	23	3	3	0.33	1	0	1	0	0
...........................................................................................................................................................................................................CAAAAGGCGTCTTGGCGTT.........................................................................................................	19	2	5	0.20	1	0	1	0	0
....................................................................................................................................................TAAATTCAAGGTGGAAAAATATGA...........................................................................................................................................................	24	3	5	0.20	1	0	1	0	0
...........................................................................................................................................................................................................................................................ATTATAACATTGATTTGCATTC......................................................	22	3	10	0.10	1	1	0	0	0
.......................................................................................................................................................................................................................TCGCGTTGCGTAATGGCAA.............................................................................................	19	3	17	0.06	1	0	1	0	0

TTGACTTTCTGTAGAAAAGTTGTTTGTACCCGTTTCGTAGGCTCCGTTTACACTCATTTTTATCTTATGGTAGTGTTTAAATAAGTTATCGGCTAATTTTTAAATTACCGTGACTAAAATGGTCCTAGTAGAAAACAGGTCTAAATAAATTTAAGTTCTACCTTTTTAACCTAGCTCAGTAAGCAAACTACACCGACGGAGTTGTTTTCCGCAGAGGCGCAAGGAATTACCGTTATTCAACAGACCCCTTTTAAAATTGTAACTAAACGTATAATTCTTAGTACTGTCACTAAGCCCGGTCGGTTAATTCCACCAGATGCTCCGGAC ************************************************.((((((((....((......)).....))))))))...(((.(((((....))))))))..(((((((...)))))))..((((.(((((((..(((((.((((((..........))))))...((((((.....(((((((.(((((.......)))))...)))))))....))))))..))))).))))))).))))........(((((......))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M020 head	M045 female body
.......................................................................................................................................CAGGTATGAAGAAATTTAAGTT..........................................................................................................................................................................	22	3	4	0.25	1	1	0
....................................................................................................................................................................................................................AGAGGCGCTAGTAACTACC................................................................................................	19	3	17	0.06	1	1	0
.................................................ACGCTCATTCTTATCTGAT...................................................................................................................................................................................................................................................................	19	3	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004585:7164677-7165003 -	dwi_1726	AACTGAAAGACATCTTTTCAACAAACATGGGCAAAGCATCCGAGGCAAATGTGAGTAAAAA------------------------------------TAGAATAC--CATCACA-A------------ATTTATTC----AATAGCCGATTAAA-AATTTAATGGCACTGATTTTACCAGGATCATCTTTTGTCCAGATTTATTTAAATTCAAGATGGAAAAATTGGA----------------------TCGAGTCATTCGTTTGATGTGGCTGCCTCAACAAAAGGCGTCTCCGCGTTCCTTAATGGCAATAAGTTGTCTGGGGAAAATTTTAA------CATTGATTTGCATATTAAGAATCATGACAGTGATTCGGGCCAGCCAATTAAGGTGGTCTACGAGGCCTG
droVir3	scaffold_12723:631513-631861 -		AA-----------------------CATGGGAAAAGCAGGTGATCCAGTTGTAAGTACC--AAATACC----------------TATG-CCCAATA-TTAAGCCT--TAACTAA-T------------A----ACAGTTTTCTTTTAGATTTCAGACTTTAATGGCACCGATTACACAAGGATAACATTCAGCCCCGACTTAACTAAGTTTAAAATGGAATCACTGGATAATGATATTGTGGCGCTTATGTCGCGTCGCGCCTACGATGTGGCAGCATCCACGAAGGGCGTGTCTGTGTTCTTGAATGGCACCAAGGTGCCGGTGAAGGGCTTCAAGGATTATATTGATCTGTTTATCAAGAATACAGATGATGACGCTGGCCAGCCTATGAAGGTGGTATACGAGGCGTG
droMoj3	scaffold_6500:29142556-29142910 -		AA-----------------------TATGAGCAAAGCTGGTGACCCAATTGTAAGTT----AAATACC----------------GATTTCTCA-AA-CTGAATTT-CAAGCTAA-TTAAGAAA-----A----AAAAAATCATTTCAGATTAAAGACTTCAATGGTAGCGACTATACACGTATCACCTTCAGTCCAGATCTATCGAAATTCAAAATGGAATCTTTGGATAGTGATATTGTTGCGCTAATGTCGCGTCGTGCCTACGATATAGCCGCTTCCACCAAGGGAGTTTCGGTTTTCTTGAATGGTACTAAGGTTCCCGTGCGTGGTTTTAAAGAATACATTGATTTGTTTGTCAAGAATACCGATGATGATGCTGGCCAGCCCATCAAAGTGGTCTACGAGGCATG
droGri2	scaffold_15252:4178554-4178919 -		AA-----------------------CATGGGCAAAGCGGGCGATCCAATCGTAAGTAAC--AAATATAGACAAC-AG----T--ATTTTCTCA-GC-TTGAACTC--AATCTA-----TGACAATAAAATGCACT----TTATTGCAGATAAAAGACTCTAGCGGCACTGATTTTACACGGATTACGTTTAGTCCAGATTTGACTAAGTTTAAGATGGATTCGCTGGATAAGGATATTGTGGCGCTGATGTCGAGACGCGCCTACGATGTGGCCGCCTCCACGAAGGGTGTGTCTGTATTCCTCAACGGCACCAAGGTGCCTGTGAAGGGCTTCAAGGACTACATTGATTTGTTTGTAAAGAATGACGATGAGGATTCGGGTCAACCCATCAAGGTGGTCTATGAGGCGTG
dp5	4_group4:6034766-6035029 +		---------------------------------------------------------------------------------------------------------------------------------------------------GATTAAGGACTTCAATGGGACCGACTTTACCCGCATCACATTCAGCCCGGATCTGGCCAAGTTCAAGATGGAGAGGCTGGACGAGGACATCGTGGCCCTAATGTCGCGTCGTGCTTTCGATGTGGCTGCCTCCTCGAAGGGCGTCTCCGTCTTCCTCAATGGCAATAAACTGACGGTGAAGAATTTCAAGGACTACATCGATCTACACGTAAAGAACCAGGACGATGATTGCGGCCAGCCGATAAAGATAGTACACGAGGTGGC
droPer2	scaffold_16:858882-859145 -		---------------------------------------------------------------------------------------------------------------------------------------------------GATTAAGGACTTCAATGGGACCGACTTTACCCGCATCACATTCAGCCCGGATCTGGCCAAGTTCAAGATGGAGAGGCTGGACGAGGACATCGTGGCCCTAATGTCGCGTCGTGCTTTCGATGTGGCTGCCTCCTCGAAGGGCGTCTCCGTCTTCCTCAATGGCAATAAACTGACGGTGAAGAATTTCAAGGACTACATCGATCTACACGTAAAGAACCAGGACGATGATTGCGGCCAGCCGATAAAGATAGTACACGAGGTGGC
droAna3	scaffold_12916:12126669-12127017 +		AA-----------------------TATGGCGAAGGCCTCCGACCCAACGGTATGTGTTTA-----AA-------ATAT--C--ATTT-C-----CAGAGAGCTC--CTTCTCAAT------------CTCTTTCC---TATCTACAGATCAAGGACTTCAACGGCAGCGACTTCACCCGCATTACATTCAGCCCCGATCTGGCCAAGTTCAAGATGGAGAGTCTGGAAGAGGACATTGTGGCTCTAATGTCTCGCCGCGCCTTTGACGTGGCTGCTTCTACGAAAGGCGTTGCTGTGTTCCTCAACGGAACTAAGCTGACGGTGAAGAATTTCAAGGACTACATCGATCTGCACATTAAGAACCAGGACGACGACGCTGGGCAGCCCATCAAGATCGTCCACGAGGTGGC
droBip1	scf7180000396769:478060-478408 +		AA-----------------------CATGTCAAAGGCCTCCGAGGCAGCGGTAAGTGTTGG-----TA-------AAATCAT--ATT--------CGTAGAACGAG-TGATTTA-T------------CTTTTTCG---AACCAACAGATTAAGGACTTCAATGGCAGCGACTTCACCCGCATTACATTCAGCCCCGATTTAGCCAAGTTCAAGATGGACCGTCTGGGCGAAGATATTGTGGCTTTAATGTCTCGCCGCGCCTTCGACGTAGCAGCTTCTACTAAAGGTGTTGCTGTGTACCTCAATGGCAATAAGCTGACAGTCAAGAATTTCAAAGACTACATCGATCTACACGTTAAGAATCAGGATGACGATGCTGGACAGCCCATCAAGATCGTCCACGAAGTGGC
droKik1	scf7180000302684:1075773-1076120 -		AA-----------------------CATGGGCAAGGCCTCCGAAGTTAAGGTATATTC---AAATACA-----------------TAAATACATCT-CCAAGGAT--GCTTTAA-TCCC----------TTTTAAC---ACCTTACAGATCAAGGAGTTTAGTGGCACTGACTTCACCCGCATCACGTTCAGCCCCGATCTGGCCAAATTCAAGATGGAACGCCTCGACGATGATATTGTGGCTCTTATGTCGCGTCGTGCCTACGATGTGGCCGCTTCCTCGAAGGGTGTTTCCGTCTTCCTTAACGGCAACAAGCTTACGGTGAAGAACTTTAAGGACTACATTGATCTGCACGTAAAGAACGCAGATGATGAC---GGGCCAGTCATTAAGGTCGTCCACGAGGTGGC
droFic1	scf7180000454003:141813-142076 +		---------------------------------------------------------------------------------------------------------------------------------------------------GATCAAGGATTTTAGTGGCACTGATTTTACTCGCATCACATTCAGTCCCGATTTGGCCAAGTTCAAGATGGAGCGTCTTGATGATGACATTGTGGCATTGATGTCGCGTCGCGCTTACGATGTGGCCGCTTCATCCAAGGGTGTTGCTGTCTTCCTCAACGGCAACAAGCTGGCGGTGAAGAACTTCAAGGACTATATTGATCTGCACATCAAGAGCACGGACGAGGACTCGGGTCCGGCCATTAAGATCGTGCACGAGGTAGC
droEle1	scf7180000491046:3521962-3522313 +		AA-----------------------CATGCAAAAGGCCTCGGATGCGAAGGTAACTACT--AAATGCC----------------AAATGCCTGTTC-CAAAACAT--CAACTAA-TCAA-----------TTGATA---AACCCACAGATCAAGGACTTTATGGGCACCGATTTTACCCGCATCACCTTCAGTCCCGATTTGGCCAAGTTTAAGATGGAACGCCTCGATGAAGACATTGTGGCGTTGATGTCGCGACGCGCCTACGACGTGGCCGCTTCATCCAAGGGCGTGTCCGTCTTCCTCAACGGCACCAAGCTGACGGTGAGGAACTTCAAGGACTACATCGATTTGCACGTCAAGAGCACGGACGAGGACAGTGGTCCACCCATTAAGATCGTGCACGAGGTAGC
droRho1	scf7180000777913:45406-45750 -		AA-----------------------CATGCAAAAGGCCTCGGACGCAAAGGTAAAA--ATT-----CT----------------GAAT-CTTGTTC-AAGAACTT--TATCTTA-T------------TATTGATA---ACCCCACAGATCAAGGACTTCAGTGGCACCGATTTCACTCGCATCACGTTCAGTCCCGATCTAGCCAAGTTCAAGATGGAGAGTCTCGATGAAGACATTGTGGCGTTGATGTCGCGTCGCGCCTACGATGTGGCCGCCTCATCTAAAGGCGTATCCGTGTATCTCAACGGCACCAAACTGTCGGTGAAAAACTTCAAGGACTACATCGATCTGCACATCAAGAGCACGGACGACGACTCTGGTCCGCCCATCAAGATCGTGCACGAGGTTGC
droBia1	scf7180000301500:136760-137109 +		AA-----------------------CATGGGCAAGGCTTCTGAAGTGAAGGTAAGTGAATA-----CT----------------ATTC-TATATTC-GAGAACAC--GGTATAA-T------------CCTTACTATCCAAACCTTAGATCAAGGACTTCAGTGGCACCGATTTCACTCGCATCACATTCAGTCCCGATTTGGCCAAGTTCAAGATGGAACGTCTCGATGAAGATATTGTGGCTCTGATGTCCCGTCGTGCCTACGATGTGGCCGCTTCATCCAAGGGTGTCTCTGTCTTTCTTAACGGCAACAAGCTGGCGGTGCGCAACTTCAAGGACTACATAGATCTGCACGTCAAGAACACGGACGACGACTCCGGTCCACCCATTAAGATCGTTCACGAGGTGGC
droTak1	scf7180000415629:225872-226229 -		AA-----------------------CATGGGCAAGGCCTCGGATGTGCAGGTAACTAACTA-----AC------TAA----CTAATTT-GTAATTC-AAGAACAC--CATCTAA-TAAACC-------CATAAATA---AACCCACAGATCAAGGACTTCAGTGGCACCGACTACACGCGCATCACATTCAGTCCCGATTTGGCCAAGTTCAAGATGGAAACCCTCGATGCAGACATTGTGGCTCTAATGTCCCGACGTGCCTACGATGTGGCCGCCTCGTCCAAGGGCGTTTCCGTCTTCCTGAACGGCAACAAGCTGGCGGTGCGCAACTTCAAGGACTACATCGATCTGCACATCAAGAGCACGGACGAGGATTCCGGTCCGCCCATTAAGATCGTTCACGAGGTGGC
droEug1	scf7180000409463:1767011-1767362 -		AA-----------------------CATGGGAAAGGCGTCTGAAGTCAAGGTAGTTATTTA-----CT-------AT----T--ATTTATACG-TC-CAGAACAT--CATCTAA-TTAT----------CTTAATA---AACCCTTAGATCAAGGACTTTAATGGTACCGATTACACTCGCATCACATTTAGTCCCGATCTGGCCAAGTTCAAGATGGAAACTCTAGATGAAGACATTGTGGCTCTAATGTCGCGTCGCGCTTACGATGTCGCAGCCTCATCAAAAGGAGTATCTGTTTTCCTCAACGGTGAAAAGCTGGCGGTGCGAAACTTCAAGGACTACATTGATTTGCACGTCAAAAGCACGGACGAAGACTCTGGCCCACCCATCAAGATTGTCCACGAGGTAGC
dm3	chr2L:19451408-19451754 -		AA-----------------------CATGGGAAAAGCCTCCGATGTGCAGGTAAGGAAATA-----AC----------------ATTT-CTTATTT-TAGACCAT--CATCTAA-T------------GTTCAGTA---AACCCACAGATCAAGGACTTCAATGGCACTGACTACACACGCATCACATTCAGTCCCGATCTGGCCAAGTTCAAGATGGACCGTCTCGATGAAGATATTGTGGCTCTAATGTCGCGTCGCGCCTACGATGTGGCCGCCTCATCCAAGGGAGTATCCGTCTTCTTAAACGGCAACAAACTGGGTGTACGCAACTTCAAGGACTATATTGATTTGCACATCAAGAACACGGACGACGATTCTGGCCCACCGATCAAGATAGTCCACGAGGTTGC
droSim2	2l:18986266-18986611 -		AA-----------------------CATGGGAAAAGCCTCCGATGTGCAGGTAAGGAAATA-----AC----------------ATTT-CTTGTTT-AAGA-CAT--CATCTAA-T------------GTTCAGTA---AACCCACAGATCAAGGACTTCAATGGCACTGACTACACACGCATCACATTCAGTCCCGATCTGGCCAAGTTCAAGATGGACCGTCTCGATGAAGATATTGTAGCTCTGATGTCGCGTCGCGCCTACGATGTGGCCGCCTCATCCAAGGGAGTATCCGTCTTCCTAAACGGCAACAAGCTGGCTGTACGCAACTTCAAGGACTATATTGATTTGCACATCAAGAGCACGGACGACGATTCTGGCCCACCGATCAAGATAGTCCACGAGGTTGC
droSec2	scaffold_7:3066876-3067222 -		AA-----------------------CATGGGAAAAGCCTCCGATGTGCAGGTAAGGAAATA-----AC----------------ATTT-CTTGTTT-AAGACCAT--CATCTGA-T------------GTTCAGTA---AACCCAAAGATCAAGGACTTCAATGGCACTGACTACACACGCATCACATTCAGTCCCGATCTGGCCAAGTTCAAGATGGACCGTCTCGATGAAGATATTGTAGCTCTGATGTCGCGTCGCGCCTACGATGTGGCCGCCTCATCCAAGGGAGTATCCGTCTTCCTAAACGGCAACAAGCTGGCTGTACGCAACTTCAAGGACTATATTGATTTGCACATCAAGAGCACGGACGAAGATTCTGGCCCACCGATCAAGATAGTCCACGAGGTTGC
droYak3	2R:5948741-5949087 -		AA-----------------------TATGGGAAAAGCATCCGATGTGCAGGTAAGGAAATA-----GC----------------ATTC-ATTGTTT-ATGACATT--TATCTAA-T------------CCTCAGTA---AACCCACAGATCAAAGACTTCAATGGCACTGACTACACTCGCATCACATTCAGTCCCGATTTGGCCAAGTTCAAGATGGAGACTCTCGATGAAGACATTGTGGCTCTGATGTCGCGTCGCGCCTACGATGTGGCCGCCTCATCTAAGGGAGTATCCGTCTTCCTAAACGGCAACAAACTTTCTGTACGCAACTTCAAAGACTATATTGATTTGCACGTCAAGAGCTCGGACGACGACTCTGGCCCACCGATCAAGATAGTCCACGAGGTTGC
droEre2	scaffold_4845:4845086-4845432 +		AA-----------------------CATGGGAAAAGCCTCCGATGTGCAGGTAAGCGAATA-----TC----------------ATTT-ATTTTTT-ATGACCAT--CATCTTA-T------------CCTCAGTA---AACCCACAGATCAAAGACTTCAATGGCACTGACTACACTCGCATCACATTCAGTCCCGATCTGGCCAAGTTCAAGATGGAGAGTCTCGATGAAGACATTGTGGCTCTGATGTCGCGTCGCGCCTACGATGTGGCCGCCTCGTCCAAGGGCGTATCCGTCTTCCTGAACGGCAATAAACTGGCTGTACGCAACTTTAAGGACTACATTGATTTGCACGTTAAGAGCACGGACGACGACTCTGGCCCACCGATCAAGATAGTCCACGAGGTTGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

AACTGAAAGACATCTTTTCAACAAACATGGGCAAAGCATCCGAGGCAAATGTGAGTAAAAA------------------------------------TAGAATAC--CATCACA-A------------ATTTATTC----AATAGCCGATTAAA-AATTTAATGGCACTGATTTTACCAGGATCATCTTTTGTCCAGATTTATTTAAATTCAAGATGGAAAAATTGGA----------------------TCGAGTCATTCGTTTGATGTGGCTGCCTCAACAAAAGGCGTCTCCGCGTTCCTTAATGGCAATAAGTTGTCTGGGGAAAATTTTAA------CATTGATTTGCATATTAAGAATCATGACAGTGATTCGGGCCAGCCAATTAAGGTGGTCTACGAGGCCTG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................ACATGGGCAAAGCATCCGAGGCA............................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	1	0
.......................AACATGGGCAAAGCATCCGAGG..............................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	1	0
.......................AACATGGGCAAAGCATCCGAGGC.............................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	1
...........................................................................................................................................................................................................................................................................TGTGGCTGCCTCAACAAAAGGCGT........................................................................................................................	24	2	0.50	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................TGATTTGCATATTAAGAAT...............................................	19	2	0.50	1	0	0	0	1	0

droVir3

AA-----------------------CATGGGAAAAGCAGGTGATCCAGTTGTAAGTACC--AAATACC----------------TATG-CCCAATA-TTAAGCCT--TAACTAA-T------------A----ACAGTTTTCTTTTAGATTTCAGACTTTAATGGCACCGATTACACAAGGATAACATTCAGCCCCGACTTAACTAAGTTTAAAATGGAATCACTGGATAATGATATTGTGGCGCTTATGTCGCGTCGCGCCTACGATGTGGCAGCATCCACGAAGGGCGTGTCTGTGTTCTTGAATGGCACCAAGGTGCCGGTGAAGGGCTTCAAGGATTATATTGATCTGTTTATCAAGAATACAGATGATGACGCTGGCCAGCCTATGAAGGTGGTATACGAGGCGTG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................................................................................................................................................................................................GTGTCTGTGTTCTTGAATGGC.....................................................................................................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TCACTGGATAATGATATTGTGGCGC......................................................................................................................................................................	25	1	2.00	2	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................TATGTCGCGTCGCGCCTACGATGTG............................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................CCTACGATGTGGCAGCATCCACGAAGGG...........................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................GAATCACTGGATAATGATATTGTGGC........................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................CCTACGATGTGGCAGCATC....................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................TGGCAGCATCCACGAAGGGCGTGTC.....................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TCGCGTCGCGCCTACGATGTGGC..........................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................GGCAGCATCCACGAAGGGCG.........................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................TGGAATCACTGGATAATGATATTGTG..........................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................TCTGTGTTCTTGAATGGCACCA.................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................ATGATATTGTGGCGCTTATGTCGCGTCG.........................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TCGCGTCGCGCCTACGATGTG............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TCACTGGATAATGATATTGTGGC........................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................TTCAGACTTTAATGGCACCGATTACAC..........................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................CGCGTCGCGCCTACGATGTGGCAGCATC....................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TAACATTCAGCCCCGACTTAACTAAGTTTAAAA....................................................................................................................................................................................................	33	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................TCAGACTTTAATGGCACCGATTACA...........................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................TTCAAGGATTATATTGAT..............................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................ACACAAGGATAACATTCAGCCCCGACT...................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CCAAGGTGCCGGTGAAGGGCTTCAAG..........................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TGTCGCGTCGCGCCTACGATGTGGC..........................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................ACCAAGGTGCCGGTGAAGGGCTTCAAG..........................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TCGCGTCGCGCCTACGATGTGGCAGC.......................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CACTGGATAATGATATTGT...........................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CCGACTTAACTAAGTTTAAAATGGAA...............................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TCACTGGATAATGATATTGT...........................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TGTGGCGCTTATGTCGCGTCGCGCC.....................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AA-----------------------TATGAGCAAAGCTGGTGACCCAATTGTAAGTT----AAATACC----------------GATTTCTCA-AA-CTGAATTT-CAAGCTAA-TTAAGAAA-----A----AAAAAATCATTTCAGATTAAAGACTTCAATGGTAGCGACTATACACGTATCACCTTCAGTCCAGATCTATCGAAATTCAAAATGGAATCTTTGGATAGTGATATTGTTGCGCTAATGTCGCGTCGTGCCTACGATATAGCCGCTTCCACCAAGGGAGTTTCGGTTTTCTTGAATGGTACTAAGGTTCCCGTGCGTGGTTTTAAAGAATACATTGATTTGTTTGTCAAGAATACCGATGATGATGCTGGCCAGCCCATCAAAGTGGTCTACGAGGCATG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................................................................................................................................................................................................................................................................TGTCAAGAATACCGATGATGATGCTGGC.............................	28	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................AGGGAGTTTCGGTTTTCTTGAAT........................................................................................................	23	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................TATCACCTTCAGTCCAGATCTATCGA.............................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................ATGGTAGCGACTATACACGT......................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................CAAGAATACCGATGATGATGCTGGCCA...........................	27	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................GTGCCTACGATATAGCCGC.......................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................ATCAAAGTGGTCTACGAGGC...	20	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................CGTCGTGCCTACGATATAGCC.........................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
AA-----------------------TATGAGCAAAGCTGGTGACCC.............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................CCGTGCGTGGTTTTAAAGAATA.....................................................................	22	1	1.00	1	1	0	0	0	0	0

droGri2

AA-----------------------CATGGGCAAAGCGGGCGATCCAATCGTAAGTAAC--AAATATAGACAAC-AG----T--ATTTTCTCA-GC-TTGAACTC--AATCTA-----TGACAATAAAATGCACT----TTATTGCAGATAAAAGACTCTAGCGGCACTGATTTTACACGGATTACGTTTAGTCCAGATTTGACTAAGTTTAAGATGGATTCGCTGGATAAGGATATTGTGGCGCTGATGTCGAGACGCGCCTACGATGTGGCCGCCTCCACGAAGGGTGTGTCTGTATTCCTCAACGGCACCAAGGTGCCTGTGAAGGGCTTCAAGGACTACATTGATTTGTTTGTAAAGAATGACGATGAGGATTCGGGTCAACCCATCAAGGTGGTCTATGAGGCGTG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.......................................................................................................................................................................................................................................................................................................................................GGGCTTCAAGGACTACATTGAT..............................................................	22	1	1.00	1	1	0

dp5

---------------------------------------------------------------------------------------------------------------------------------------------------GATTAAGGACTTCAATGGGACCGACTTTACCCGCATCACATTCAGCCCGGATCTGGCCAAGTTCAAGATGGAGAGGCTGGACGAGGACATCGTGGCCCTAATGTCGCGTCGTGCTTTCGATGTGGCTGCCTCCTCGAAGGGCGTCTCCGTCTTCCTCAATGGCAATAAACTGACGGTGAAGAATTTCAAGGACTACATCGATCTACACGTAAAGAACCAGGACGATGATTGCGGCCAGCCGATAAAGATAGTACACGAGGTGGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................ACGATGATTGCGGCCAGCC........................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................TCCTCGAAGGGCGTCTCCGTCTT...............................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................ATAAAGATAGTACACGAGGTGGC	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................CGTGGCCCTAATGTCGCGTCG.........................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................ATCGTGGCCCTAATGTCGC.............................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................TACACGTAAAGAACCAGGACGA.......................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................GCTTTCGATGTGGCTGCCTCCTCG................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................CCTCGAAGGGCGTCTCCGTCT................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................GAGGCTGGACGAGGACATCGTGGCC.......................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................GGACATCGTGGCCCTAATGTCGC.............................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GAATTTCAAGGACTACATCG................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................ACATCGTGGCCCTAATGTCGCG............................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................CTCGAAGGGCGTCTCCGTCTTCCTCAATG.......................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................CAATGGGACCGACTTTACCCGC......................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................CAGGACGATGATTGCGGC.............................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................................................................................................ATCGTGGCCCTAATGTCGCGTC..........................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

---------------------------------------------------------------------------------------------------------------------------------------------------GATTAAGGACTTCAATGGGACCGACTTTACCCGCATCACATTCAGCCCGGATCTGGCCAAGTTCAAGATGGAGAGGCTGGACGAGGACATCGTGGCCCTAATGTCGCGTCGTGCTTTCGATGTGGCTGCCTCCTCGAAGGGCGTCTCCGTCTTCCTCAATGGCAATAAACTGACGGTGAAGAATTTCAAGGACTACATCGATCTACACGTAAAGAACCAGGACGATGATTGCGGCCAGCCGATAAAGATAGTACACGAGGTGGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................................................................................................................................................................................................................................................................................................................AGAATTTCAAGGACTACATC.................................................................	20	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................CTGGCCAAGTTCAAGATGGA................................................................................................................................................................................................	20	1	2.00	2	0	1	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................ATTTCAAGGACTACATCGATCT............................................................	22	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................................................GACGAGGACATCGTGGCC.......................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................CCAGGACGATGATTGCGGCCAGCCG.......................	25	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................AAACTGACGGTGAAGAAT................................................................................	18	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................AGAATTTCAAGGACTACATCG................................................................	21	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................GCCCTAATGTCGCGTCGTGCTTTC..................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................ATTTCAAGGACTACATCGATCC............................................................	22	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................GAGGCTGGACGAGGACATCGTGGCC.......................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................CGTCGTGCTTTCGATGTGGC..........................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................CATCACATTCAGCCCGGATCTGGCCAAGT..........................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................ATTTCAAGGACTACATCGAT..............................................................	20	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................GAAGAATTTCAAGGACTACAT..................................................................	21	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................GAAGAATTTCAAGGACTACATCG................................................................	23	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................GCTGGACGAGGACATCGTG..........................................................................................................................................................................	19	2	0.50	1	0	0	1	0	0	0

droAna3

AA-----------------------TATGGCGAAGGCCTCCGACCCAACGGTATGTGTTTA-----AA-------ATAT--C--ATTT-C-----CAGAGAGCTC--CTTCTCAAT------------CTCTTTCC---TATCTACAGATCAAGGACTTCAACGGCAGCGACTTCACCCGCATTACATTCAGCCCCGATCTGGCCAAGTTCAAGATGGAGAGTCTGGAAGAGGACATTGTGGCTCTAATGTCTCGCCGCGCCTTTGACGTGGCTGCTTCTACGAAAGGCGTTGCTGTGTTCCTCAACGGAACTAAGCTGACGGTGAAGAATTTCAAGGACTACATCGATCTGCACATTAAGAACCAGGACGACGACGCTGGGCAGCCCATCAAGATCGTCCACGAGGTGGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................................................................................................................................................................................................................AGGACTACATCGATCTGCAC........................................................	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TACGAAAGGCGTTGCTGTGTTC..............................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................AAGTTCAAGATGGAGAGTCT..........................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TTCCTCAACGGAACTAAGCTGACGGTGA.....................................................................................	28	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................GAGGACATTGTGGCTCTAATGT................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................GTTCAAGATGGAGAGTCTG.........................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................GCTCTAATGTCTCGCCGCG.......................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................CCTCAACGGAACTAAGCTGACGGTGAAG...................................................................................	28	1	1.00	1	0	0	0	0	1	0
.A-----------------------TATGGCGAAGGCCTCCGACCCA............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................GACTACATCGATCTGCACAT......................................................	20	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................GGCTGCTTCTACGAAAGGCGTTGCTGT..................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................TGCTGTGTTCCTCAACGGA.....................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................AACCAGGACGACGACGCTGGGCAGCC........................	26	1	1.00	1	1	0	0	0	0	0

droBip1

AA-----------------------CATGTCAAAGGCCTCCGAGGCAGCGGTAAGTGTTGG-----TA-------AAATCAT--ATT--------CGTAGAACGAG-TGATTTA-T------------CTTTTTCG---AACCAACAGATTAAGGACTTCAATGGCAGCGACTTCACCCGCATTACATTCAGCCCCGATTTAGCCAAGTTCAAGATGGACCGTCTGGGCGAAGATATTGTGGCTTTAATGTCTCGCCGCGCCTTCGACGTAGCAGCTTCTACTAAAGGTGTTGCTGTGTACCTCAATGGCAATAAGCTGACAGTCAAGAATTTCAAAGACTACATCGATCTACACGTTAAGAATCAGGATGACGATGCTGGACAGCCCATCAAGATCGTCCACGAAGTGGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AA-----------------------CATGGGCAAGGCCTCCGAAGTTAAGGTATATTC---AAATACA-----------------TAAATACATCT-CCAAGGAT--GCTTTAA-TCCC----------TTTTAAC---ACCTTACAGATCAAGGAGTTTAGTGGCACTGACTTCACCCGCATCACGTTCAGCCCCGATCTGGCCAAATTCAAGATGGAACGCCTCGACGATGATATTGTGGCTCTTATGTCGCGTCGTGCCTACGATGTGGCCGCTTCCTCGAAGGGTGTTTCCGTCTTCCTTAACGGCAACAAGCTTACGGTGAAGAACTTTAAGGACTACATTGATCTGCACGTAAAGAACGCAGATGATGAC---GGGCCAGTCATTAAGGTCGTCCACGAGGTGGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

---------------------------------------------------------------------------------------------------------------------------------------------------GATCAAGGATTTTAGTGGCACTGATTTTACTCGCATCACATTCAGTCCCGATTTGGCCAAGTTCAAGATGGAGCGTCTTGATGATGACATTGTGGCATTGATGTCGCGTCGCGCTTACGATGTGGCCGCTTCATCCAAGGGTGTTGCTGTCTTCCTCAACGGCAACAAGCTGGCGGTGAAGAACTTCAAGGACTATATTGATCTGCACATCAAGAGCACGGACGAGGACTCGGGTCCGGCCATTAAGATCGTGCACGAGGTAGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AA-----------------------CATGCAAAAGGCCTCGGATGCGAAGGTAACTACT--AAATGCC----------------AAATGCCTGTTC-CAAAACAT--CAACTAA-TCAA-----------TTGATA---AACCCACAGATCAAGGACTTTATGGGCACCGATTTTACCCGCATCACCTTCAGTCCCGATTTGGCCAAGTTTAAGATGGAACGCCTCGATGAAGACATTGTGGCGTTGATGTCGCGACGCGCCTACGACGTGGCCGCTTCATCCAAGGGCGTGTCCGTCTTCCTCAACGGCACCAAGCTGACGGTGAGGAACTTCAAGGACTACATCGATTTGCACGTCAAGAGCACGGACGAGGACAGTGGTCCACCCATTAAGATCGTGCACGAGGTAGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AA-----------------------CATGCAAAAGGCCTCGGACGCAAAGGTAAAA--ATT-----CT----------------GAAT-CTTGTTC-AAGAACTT--TATCTTA-T------------TATTGATA---ACCCCACAGATCAAGGACTTCAGTGGCACCGATTTCACTCGCATCACGTTCAGTCCCGATCTAGCCAAGTTCAAGATGGAGAGTCTCGATGAAGACATTGTGGCGTTGATGTCGCGTCGCGCCTACGATGTGGCCGCCTCATCTAAAGGCGTATCCGTGTATCTCAACGGCACCAAACTGTCGGTGAAAAACTTCAAGGACTACATCGATCTGCACATCAAGAGCACGGACGACGACTCTGGTCCGCCCATCAAGATCGTGCACGAGGTTGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AA-----------------------CATGGGCAAGGCTTCTGAAGTGAAGGTAAGTGAATA-----CT----------------ATTC-TATATTC-GAGAACAC--GGTATAA-T------------CCTTACTATCCAAACCTTAGATCAAGGACTTCAGTGGCACCGATTTCACTCGCATCACATTCAGTCCCGATTTGGCCAAGTTCAAGATGGAACGTCTCGATGAAGATATTGTGGCTCTGATGTCCCGTCGTGCCTACGATGTGGCCGCTTCATCCAAGGGTGTCTCTGTCTTTCTTAACGGCAACAAGCTGGCGGTGCGCAACTTCAAGGACTACATAGATCTGCACGTCAAGAACACGGACGACGACTCCGGTCCACCCATTAAGATCGTTCACGAGGTGGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AA-----------------------CATGGGCAAGGCCTCGGATGTGCAGGTAACTAACTA-----AC------TAA----CTAATTT-GTAATTC-AAGAACAC--CATCTAA-TAAACC-------CATAAATA---AACCCACAGATCAAGGACTTCAGTGGCACCGACTACACGCGCATCACATTCAGTCCCGATTTGGCCAAGTTCAAGATGGAAACCCTCGATGCAGACATTGTGGCTCTAATGTCCCGACGTGCCTACGATGTGGCCGCCTCGTCCAAGGGCGTTTCCGTCTTCCTGAACGGCAACAAGCTGGCGGTGCGCAACTTCAAGGACTACATCGATCTGCACATCAAGAGCACGGACGAGGATTCCGGTCCGCCCATTAAGATCGTTCACGAGGTGGC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AA-----------------------CATGGGAAAGGCGTCTGAAGTCAAGGTAGTTATTTA-----CT-------AT----T--ATTTATACG-TC-CAGAACAT--CATCTAA-TTAT----------CTTAATA---AACCCTTAGATCAAGGACTTTAATGGTACCGATTACACTCGCATCACATTTAGTCCCGATCTGGCCAAGTTCAAGATGGAAACTCTAGATGAAGACATTGTGGCTCTAATGTCGCGTCGCGCTTACGATGTCGCAGCCTCATCAAAAGGAGTATCTGTTTTCCTCAACGGTGAAAAGCTGGCGGTGCGAAACTTCAAGGACTACATTGATTTGCACGTCAAAAGCACGGACGAAGACTCTGGCCCACCCATCAAGATTGTCCACGAGGTAGC	Size	Hit Count	Total Norm	Total
No Reads

dm3

AA-----------------------CATGGGAAAAGCCTCCGATGTGCAGGTAAGGAAATA-----AC----------------ATTT-CTTATTT-TAGACCAT--CATCTAA-T------------GTTCAGTA---AACCCACAGATCAAGGACTTCAATGGCACTGACTACACACGCATCACATTCAGTCCCGATCTGGCCAAGTTCAAGATGGACCGTCTCGATGAAGATATTGTGGCTCTAATGTCGCGTCGCGCCTACGATGTGGCCGCCTCATCCAAGGGAGTATCCGTCTTCTTAAACGGCAACAAACTGGGTGTACGCAACTTCAAGGACTATATTGATTTGCACATCAAGAACACGGACGACGATTCTGGCCCACCGATCAAGATAGTCCACGAGGTTGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................ATGGGAAAAGCCTCCGATGTGC...........................................................................................................................................................................................................................................................................................................................................................................	22	1	31.00	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	9	2	14	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AA-----------------------CATGGGAAAAGCCTCCGATGTGC...........................................................................................................................................................................................................................................................................................................................................................................	25	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	8	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................AAGATGGACCGTCTCGATGAAGAT................................................................................................................................................................................	24	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.A-----------------------CATGGGAAAAGCCTCCGATGTGC...........................................................................................................................................................................................................................................................................................................................................................................	24	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................GCAACTTCAAGGACTATATTGA...............................................................	22	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................ATCCAAGGGAGTATCCGTCTTCTT............................................................................................................	24	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................CGCCTCATCCAAGGGAGTATCCGTCTT...............................................................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................................................................................................................................................................TTCAAGGACTATATTGATTTGC..........................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................ACGCAACTTCAAGGACTATATTGATT.............................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................TCAAGGACTATATTGATTTGCACATC.....................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................TGGCCGCCTCATCCAAGGG...........................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AA-----------------------CATGGGAAAAGCCTCCGATGTGCAGGTAAGGAAATA-----AC----------------ATTT-CTTGTTT-AAGA-CAT--CATCTAA-T------------GTTCAGTA---AACCCACAGATCAAGGACTTCAATGGCACTGACTACACACGCATCACATTCAGTCCCGATCTGGCCAAGTTCAAGATGGACCGTCTCGATGAAGATATTGTAGCTCTGATGTCGCGTCGCGCCTACGATGTGGCCGCCTCATCCAAGGGAGTATCCGTCTTCCTAAACGGCAACAAGCTGGCTGTACGCAACTTCAAGGACTATATTGATTTGCACATCAAGAGCACGGACGACGATTCTGGCCCACCGATCAAGATAGTCCACGAGGTTGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................................................................................................................................................................................................................................TACGCAACTTCAAGGACTATATTGATT.............................................................	27	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................GGCAACAAGCTGGCTGTACGCAACTTCA............................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................CTGTACGCAACTTCAAGGACTATATTGA...............................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TTCAATGGCACTGACTACACACGCA.....................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................AGCTGGCTGTACGCAACTTCAAGGA........................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TGTAGCTCTGATGTCGCGTCGCGCCTA...................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TCTGGCCCACCGATCAAGATAGT............	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................ATTGTAGCTCTGATGTCGCGTCG.........................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................AGTTCAAGATGGACCGTCTCGATGAA...................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................TGTAGCTCTGATGTCGCGTCGCGCC.....................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................CAAGGACTATATTGATTTG...........................................................	19	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AAGGGAGTATCCGTCTTCCTAAACGGCA....................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TATATTGATTTGCACATCAAGAGCACGGA..........................................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................AAGAGCACGGACGACGATT..................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................TACACACGCATCACATTCAGTCCCGA.....................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................GATGTCGCGTCGCGC......................................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................ATCAAGAGCACGGAA.........................................	15	16	0.06	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

AA-----------------------CATGGGAAAAGCCTCCGATGTGCAGGTAAGGAAATA-----AC----------------ATTT-CTTGTTT-AAGACCAT--CATCTGA-T------------GTTCAGTA---AACCCAAAGATCAAGGACTTCAATGGCACTGACTACACACGCATCACATTCAGTCCCGATCTGGCCAAGTTCAAGATGGACCGTCTCGATGAAGATATTGTAGCTCTGATGTCGCGTCGCGCCTACGATGTGGCCGCCTCATCCAAGGGAGTATCCGTCTTCCTAAACGGCAACAAGCTGGCTGTACGCAACTTCAAGGACTATATTGATTTGCACATCAAGAGCACGGACGAAGATTCTGGCCCACCGATCAAGATAGTCCACGAGGTTGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................GATGGACCGTCTCGATGAA...................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...................................................................................................................................................................................GCATCACATTCAGTCCCGATCTGGC...............................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0
........................................................................................................................................................................................................................................GATATTGTAGCTCTGATGT................................................................................................................................................................	19	1	1.00	1	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................CACCGATCAAGATAGTCCACGAGG....	24	1	1.00	1	0	0	0	1
.....................................................................................................................................................................................................................................................................CTACGATGTGGCCGCCTC....................................................................................................................................	18	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................TGAAGATATTGTAGCTCTGATGTC...............................................................................................................................................................	24	1	1.00	1	0	0	1	0

droYak3

AA-----------------------TATGGGAAAAGCATCCGATGTGCAGGTAAGGAAATA-----GC----------------ATTC-ATTGTTT-ATGACATT--TATCTAA-T------------CCTCAGTA---AACCCACAGATCAAAGACTTCAATGGCACTGACTACACTCGCATCACATTCAGTCCCGATTTGGCCAAGTTCAAGATGGAGACTCTCGATGAAGACATTGTGGCTCTGATGTCGCGTCGCGCCTACGATGTGGCCGCCTCATCTAAGGGAGTATCCGTCTTCCTAAACGGCAACAAACTTTCTGTACGCAACTTCAAAGACTATATTGATTTGCACGTCAAGAGCTCGGACGACGACTCTGGCCCACCGATCAAGATAGTCCACGAGGTTGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................................................................................................................................................................CTCGATGAAGACATTGTGGCTCTGATGT................................................................................................................................................................	28	1	5.00	5	0	0	5	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................AAGATGGAGACTCTCGAT......................................................................................................................................................................................	18	1	2.00	2	1	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................CTCGATGAAGACATTGTGGCTCTGATGC................................................................................................................................................................	28	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................GACTATATTGATTTGCACGT......................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................GATGAAGACATTGTGGCTCTGAT..................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................CTCGATGAAGACATTGTGGCTCTGATG.................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................TCATCTAAGGGAGTATCCGTC.................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TTGTGGCTCTGATGTCGCGTCGCGCC.....................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................CAAGATGGAGACTCTCGAT......................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................GCACGTCAAGAGCTCGGACGACGACTCT................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

AA-----------------------CATGGGAAAAGCCTCCGATGTGCAGGTAAGCGAATA-----TC----------------ATTT-ATTTTTT-ATGACCAT--CATCTTA-T------------CCTCAGTA---AACCCACAGATCAAAGACTTCAATGGCACTGACTACACTCGCATCACATTCAGTCCCGATCTGGCCAAGTTCAAGATGGAGAGTCTCGATGAAGACATTGTGGCTCTGATGTCGCGTCGCGCCTACGATGTGGCCGCCTCGTCCAAGGGCGTATCCGTCTTCCTGAACGGCAATAAACTGGCTGTACGCAACTTTAAGGACTACATTGATTTGCACGTTAAGAGCACGGACGACGACTCTGGCCCACCGATCAAGATAGTCCACGAGGTTGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................TTGCACGTTAAGAGCACGGACGACGACT..................................	28	1	4.00	4	0	0	0	0	0	0	4
...........................................................................................................................................................ACTTCAATGGCACTGACTACACTCGC......................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TAAGAGCACGGACGACGACTCTGGCC............................	26	1	1.00	1	0	0	0	0	0	0	1
..................................................................................................................................................................................................................................GATGAAGACATTGTGGCTCT.....................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CCACCGATCAAGATAGTCCACGAG.....	24	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................ATGGCACTGACTACACTCGC......................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................CTCTGATGTCGCGTCGCGCCTAC..................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................GATGTGGCCGCCTCGTCCAAGGGCGT........................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................GATCAAGATAGTCCACGAGGTT..	22	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................GTGGCCGCCTCGTCCAAGGGC..........................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................GACATTGTGGCTCTGATGT................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................CTTCCTGAACGGCAATAAACTGGCT.........................................................................................	25	1	1.00	1	0	0	0	0	1	0	0

dwi_1726

scf2_1100000004585:7164727-7164953 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-42.2	-42.1	-42.0