ID:

dwi_172

 Coordinate:

scf2_1100000004577:1804934-1804998 -

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-37.9 -37.9 -37.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ATTAATGTAACATACATATATCTTAAAAATTATAAATTGATTGGTTTTCATTAGGCTTCAGGTCAATTGACTGTGTTTTTTATTTTGGTTCAATTCAATTGATCTGAAGCCCGATAAAAACCAATTACTACAACACAAAGGTCGCTTAAACAATTACAATAAATT

***********************************..(((((((((((.(((.(((((((((((((((((.((.................))..))))))))))))))))).))).)))))))))))..************************************ 		Read size # Mismatch Hit Count Total Norm Total V117

male body		 M045

female body

 M020

head

 V118

embryo

 V119

head
.............................................................................................TTCAATTGATCTGAAGCCCGA................................................... 21 0 1 224.00 224 193 23 6 2 0
.............................................................................................TTCAATTGATCTGAAGCCCGAT.................................................. 22 0 1 134.00 134 96 33 0 5 0
.............................................................................................TTCAATTGATCTGAAGCCCG.................................................... 20 0 1 55.00 55 31 3 21 0 0
..................................................TTAGGCTTCAGGTCAATTGACT............................................................................................. 22 0 1 37.00 37 1 18 6 9 3
.............................................................................................TTCAATTGATCTGAAGCCCGATA................................................. 23 0 1 21.00 21 17 4 0 0 0
...................................................TAGGCTTCAGGTCAATTGACT............................................................................................. 21 0 1 13.00 13 1 12 0 0 0
..............................................................................................TCAATTGATCTGAAGCCCGATA................................................. 22 0 1 12.00 12 7 3 1 1 0
.............................................................................................TTCAATTGATCTGAAGCCCGATT................................................. 23 1 1 9.00 9 9 0 0 0 0
.............................................................................................TTCAATTGATCTGAAGCCCGAA.................................................. 22 1 1 9.00 9 9 0 0 0 0
..................................................TTAGGCTTCAGGTCAATTGAC.............................................................................................. 21 0 1 8.00 8 0 3 5 0 0
..............................................................................................TCAATTGATCTGAAGCCCGAT.................................................. 21 0 1 8.00 8 4 1 0 3 0
...................................................TAGGCTTCAGGTCAATTGACTG............................................................................................ 22 0 1 7.00 7 0 2 4 1 0
............................................................................................ATTCAATTGATCTGAAGCCCGA................................................... 22 0 1 6.00 6 4 0 2 0 0
.............................................................................................TTCAATTGATCTGAAGCCCGAAA................................................. 23 1 1 6.00 6 4 2 0 0 0
.............................................................................................TTCAATTGATCTGAAGCCCGATC................................................. 23 1 1 5.00 5 3 2 0 0 0
..............................................................................................TCAATTGATCTGAAGCCCGA................................................... 20 0 1 4.00 4 1 1 0 2 0
.............................................................................................TTCAATTGATCTGAAGCCC..................................................... 19 0 1 3.00 3 0 0 3 0 0
..................................................TTAGGCTTCAGGTCAATTGACTT............................................................................................ 23 1 1 3.00 3 0 0 3 0 0
.............................................................................................TTCAATTGATCTGAAGCCCGATCC................................................ 24 2 1 3.00 3 2 1 0 0 0
..................................................TTAGGCTTCAGGTCAATTGACTA............................................................................................ 23 1 1 3.00 3 0 0 2 1 0
.............................................................................................TTCAATTGATCTGAAGCCCGT................................................... 21 1 1 2.00 2 2 0 0 0 0
...............................................................................................CAATTGATCTGAAGCCCGAT.................................................. 20 0 1 2.00 2 0 2 0 0 0
.............................................................................................TTCAATTGATCTGAAGCCCGATAAAA.............................................. 26 0 1 2.00 2 1 1 0 0 0
.............................................................................................TTCAATTGATCTGAAGCCCGATG................................................. 23 1 1 2.00 2 2 0 0 0 0
.............................................................................................TTCAATTGATCTGAAGCCCGATAAA............................................... 25 0 1 2.00 2 1 1 0 0 0
.............................................................................................TTCAATTGATCTGAAGCCCGATCT................................................ 24 2 1 2.00 2 1 0 0 0 1
...................................................TAGGCTTCAGGTCAATTGAC.............................................................................................. 20 0 1 2.00 2 0 0 2 0 0
.............................................................................................TTCAATTGATCTGAAGCCCGATAA................................................ 24 0 1 2.00 2 1 1 0 0 0
............................................................................................ATTCAATTGATCTGAAGCCCG.................................................... 21 0 1 2.00 2 0 0 2 0 0
.............................................................................................TTCAATTGATCTGAAGCCCGATAT................................................ 24 1 1 2.00 2 1 1 0 0 0
...................................................GTGGCTTCAGGTCAATTGACT............................................................................................. 21 2 1 1.00 1 0 1 0 0 0
.............................................................................................TTCAATTGATCTGAAGCCCGTA.................................................. 22 2 1 1.00 1 1 0 0 0 0
.............................................................................................TCCAATTGATCTGAAGCCCGA................................................... 21 1 1 1.00 1 1 0 0 0 0
.............................................................................................TTCAATTGATCTGACGCCCGATA................................................. 23 1 1 1.00 1 1 0 0 0 0
.............................................................................................TTCAATTGATCTGAAGCCCGCT.................................................. 22 1 1 1.00 1 0 1 0 0 0
.............................................................................................ATCAATTGATCTGAAGCCCG.................................................... 20 1 1 1.00 1 0 0 0 0 1
.............................................................................................TTCAATTGATCTGAAGCCCGATCCA............................................... 25 2 1 1.00 1 0 1 0 0 0
............................................................................................GTTCAATTGATCTGAAGCCCGATA................................................. 24 1 1 1.00 1 1 0 0 0 0
..................................................TTAGGCTTCAGGTCAATTGACA............................................................................................. 22 1 1 1.00 1 0 0 0 1 0
.............................................................................................TTCAATTGATCTTAAGCCCGA................................................... 21 1 1 1.00 1 1 0 0 0 0
.............................................................................................TTCAATTGATCTGAAGCCCT.................................................... 20 1 1 1.00 1 1 0 0 0 0
.................................................................................................ATTGATCTGAAGCCCGATAA................................................ 20 0 1 1.00 1 0 1 0 0 0
.............................................................................................TTCAATTGATGTGAAGCCCGA................................................... 21 1 1 1.00 1 1 0 0 0 0
...................................................TAGGCTTCAGGTCAATTGA............................................................................................... 19 0 1 1.00 1 0 0 0 0 1
....................................................AGGCTTCAGGTCAATTGACT............................................................................................. 20 0 1 1.00 1 0 1 0 0 0
.............................................................................................TTCAATTGATCTGAAGCCCGG................................................... 21 1 1 1.00 1 0 0 1 0 0
..............................................................................................TCAATTGATCTGAAGCCCGATAA................................................ 23 0 1 1.00 1 0 0 1 0 0
............................................................................................ATTCAATTGATCTGAAGCCCGAAT................................................. 24 2 1 1.00 1 1 0 0 0 0
...................................................TAGGCTTCAGGTCAATTGACTGT........................................................................................... 23 0 1 1.00 1 0 0 1 0 0
..............................................................................................TCAATTGATCTGCAGCCCGATA................................................. 22 1 1 1.00 1 1 0 0 0 0
............................................................................................ATTCAATTGATCTGAAGCCC..................................................... 20 0 1 1.00 1 0 0 1 0 0
.............................................................................................TTCAATTGATCTGAAGCCCGATAAAAA............................................. 27 0 1 1.00 1 0 1 0 0 0
.............................................................................................TTTAATTGATCTGAAGCCCGA................................................... 21 1 1 1.00 1 1 0 0 0 0
.............................................................................................TTCAATTGAACTGAAGCCCGA................................................... 21 1 1 1.00 1 1 0 0 0 0
...................................................TACGCTTCAGGTCAATTGACT............................................................................................. 21 1 1 1.00 1 0 1 0 0 0
..................................................TTAGGCCTCAGGTCAATTGAC.............................................................................................. 21 1 1 1.00 1 0 1 0 0 0
..................................................TTAGGCTTCAGGTCAATTG................................................................................................ 19 0 1 1.00 1 0 1 0 0 0
.............................................................................................TTCAATTGACCTGAAGCCCGAT.................................................. 22 1 2 0.50 1 1 0 0 0 0
.............................................................................................TTCAATTGATCTGAAGCCTGATG................................................. 23 2 3 0.33 1 1 0 0 0 0
..............................................................................................TCAATTGACCTGAAGCCCGAT.................................................. 21 1 3 0.33 1 1 0 0 0 0

Anti-sense strand reads

TAATTACATTGTATGTATATAGAATTTTTAATATTTAACTAACCAAAAGTAATCCGAAGTCCAGTTAACTGACACAAAAAATAAAACCAAGTTAAGTTAACTAGACTTCGGGCTATTTTTGGTTAATGATGTTGTGTTTCCAGCGAATTTGTTAATGTTATTTAA

************************************..(((((((((((.(((.(((((((((((((((((.((.................))..))))))))))))))))).))).)))))))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total V118

embryo

 M045

female body

 V117

male body		 M020

head
...................................................ATCCGAAGTCCAGTTAACTG.............................................................................................. 20 0 1 3.00 3 3 0 0 0
.................................................TAATCCGAAGTCCAGTTAACTG.............................................................................................. 22 0 1 1.00 1 0 1 0 0
..........................................................................................GTTAAGTTAACTAGACTTCGGGC.................................................... 23 0 1 1.00 1 1 0 0 0
........................................................................................................ACTTCGGGCTATTGTTGGG.......................................... 19 2 1 1.00 1 0 0 1 0
........................................................................................................ACTTCGGGCTATTGTTGGGCAA....................................... 22 3 1 1.00 1 0 1 0 0
....................................................TCCGAAGTCCAGTTAACTG.............................................................................................. 19 0 2 0.50 1 0 0 0 1
.........................................................................................................CTTCGGGCTATTGTTGGGCA........................................ 20 3 4 0.50 2 0 1 1 0
..........................................................................................................TTCGGGCTATTGTTGGGCA........................................ 19 3 10 0.10 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004577:1804884-1805048 - dwi_172 confident ATTAATGTAACATACATATATCTTAAAAATTATAAATTGATTGGTTTTCATTAGGCTTCAGGTCAATTGACTGTGTTTTTTATTTTGGTTCAATTCAATTGATCTGAAGCCCGATAAAAACCAATTACTACAACACAAAGGTCGCTTAAACAATTACAATAAATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
ATTAATGTAACATACATATATCTTAAAAATTATAAATTGATTGGTTTTCATTAGGCTTCAGGTCAATTGACTGTGTTTTTTATTTTGGTTCAATTCAATTGATCTGAAGCCCGATAAAAACCAATTACTACAACACAAAGGTCGCTTAAACAATTACAATAAATTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.............................................................................................TTCAATTGATCTGAAGCCCGA...................................................211224.0022462319320
.............................................................................................TTCAATTGATCTGAAGCCCGAT..................................................221134.001340339650
.............................................................................................TTCAATTGATCTGAAGCCCG....................................................20155.00552133100
..................................................TTAGGCTTCAGGTCAATTGACT.............................................................................................22137.0037618193
.............................................................................................TTCAATTGATCTGAAGCCCGATA.................................................23121.0021041700
...................................................TAGGCTTCAGGTCAATTGACT.............................................................................................21113.0013012100
..............................................................................................TCAATTGATCTGAAGCCCGATA.................................................22112.001213710
.............................................................................................TTCAATTGATCTGAAGCCCGATT.................................................2319.00900900
.............................................................................................TTCAATTGATCTGAAGCCCGAA..................................................2219.00900900
..................................................TTAGGCTTCAGGTCAATTGAC..............................................................................................2118.00853000
..............................................................................................TCAATTGATCTGAAGCCCGAT..................................................2118.00801430
...................................................TAGGCTTCAGGTCAATTGACTG............................................................................................2217.00742010
............................................................................................ATTCAATTGATCTGAAGCCCGA...................................................2216.00620400
.............................................................................................TTCAATTGATCTGAAGCCCGATC.................................................2315.00502300
..............................................................................................TCAATTGATCTGAAGCCCGA...................................................2014.00401120
.............................................................................................TTCAATTGATCTGAAGCCC.....................................................1913.00330000
..................................................TTAGGCTTCAGGTCAATTGACTT............................................................................................2313.00330000
.............................................................................................TTCAATTGATCTGAAGCCCGATCC................................................2413.00301200
..................................................TTAGGCTTCAGGTCAATTGACTA............................................................................................2313.00320010
.............................................................................................TTCAATTGATCTGAAGCCCGT...................................................2112.00200200
...............................................................................................CAATTGATCTGAAGCCCGAT..................................................2012.00202000
.............................................................................................TTCAATTGATCTGAAGCCCGATAAAA..............................................2612.00201100
.............................................................................................TTCAATTGATCTGAAGCCCGATG.................................................2312.00200200
.............................................................................................TTCAATTGATCTGAAGCCCGATAAA...............................................2512.00201100
.............................................................................................TTCAATTGATCTGAAGCCCGATCT................................................2412.00200101
...................................................TAGGCTTCAGGTCAATTGAC..............................................................................................2012.00220000
.............................................................................................TTCAATTGATCTGAAGCCCGATAA................................................2412.00201100
............................................................................................ATTCAATTGATCTGAAGCCCG....................................................2112.00220000
.............................................................................................TTCAATTGATCTGAAGCCCGATAT................................................2412.00201100
.............................................................................................TTCAATTGATCTGAAGCCCGTA..................................................2211.00100100
..................................................TTAGGCTTCAGGTCAATTGACA.............................................................................................2211.00100010
.............................................................................................TTCAATTGATCTGAAGCCCT....................................................2011.00100100
.................................................................................................ATTGATCTGAAGCCCGATAA................................................2011.00101000
...................................................TAGGCTTCAGGTCAATTGA...............................................................................................1911.00100001
....................................................AGGCTTCAGGTCAATTGACT.............................................................................................2011.00101000
.............................................................................................TTCAATTGATCTGAAGCCCGG...................................................2111.00110000
..............................................................................................TCAATTGATCTGAAGCCCGATAA................................................2311.00110000
............................................................................................ATTCAATTGATCTGAAGCCCGAAT.................................................2411.00100100
...................................................TAGGCTTCAGGTCAATTGACTGT...........................................................................................2311.00110000
............................................................................................ATTCAATTGATCTGAAGCCC.....................................................2011.00110000
.............................................................................................TTCAATTGATCTGAAGCCCGATAAAAA.............................................2711.00101000
..................................................TTAGGCTTCAGGTCAATTG................................................................................................1911.00101000

Generated: 10/20/2015 at 06:53 PM