ID:

dwi_164

 Coordinate:

scf2_1100000004514:3361423-3361509 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-39.2 -38.9 -38.7

Flybase annnotation

intergenic

No Repeatable elements found

mature
star
  1. scf2_1100000004511:2477316-2477339 -
  2. scf2_1100000004514:116563-116586 -
  3. dwi_164  scf2_1100000004514:3361469-3361492 -
  4. scf2_1100000004515:3543095-3543118 -
  5. scf2_1100000004521:9687985-9688008 -
  6. scf2_1100000004558:773532-773555 -
  7. scf2_1100000004729:870406-870429 -
  8. scf2_1100000004943:1991511-1991534 -
  9. scf2_1100000004943:13116116-13116139 -
  10. scf2_1100000004945:101119-101142 -
  11. scf2_1100000004902:11837174-11837197 -
  12. scf2_1100000004921:2130499-2130522 -
  13. scf2_1100000004949:59766-59789 -
  14. scf2_1100000004949:308302-308325 -
  15. scf2_1100000004949:1126647-1126670 -
  16. scf2_1100000004954:1340277-1340300 -
  17. scf2_1100000004954:3466724-3466747 -
  18. scf2_1100000004963:3382127-3382150 -
  19. scf2_1100000004967:2728737-2728760 -
  20. scf2_1100000004967:4173572-4173595 -

Sense Strand Reads

TGCATCTCTTATTGTTAGTTATAAAGTAAGTTTGTCTCATATTGGAATACACCTAGACCTCGCTTTGCGTCGTTTCAGTTTGCGTCGTGTTTTTTTGGAACGTATCCCCAACGTAAAGCGAGGTCTAGGTGTACACAAAATTAATACATACTATTTACATGAGTAGAATAAATCTTTGGACCCGAAT
****************************************************((((((((((((((((((((((((((...((.....))....))))))))........)))))))))))))))))).......................************************************ 		Read size # Mismatch Hit Count Total Norm Total V119
head
 M045
female body
 V117
male body		 V118
embryo
.................................................................................................................TAAAGCGAGGTCTAGGTGTACAC................................................... 23 0 1 13.00 13 11 0 2 0
.GCAACCCTTATTGTTAGTT....................................................................................................................................................................... 19 2 3 3.33 10 0 10 0 0
.................................................................................................................TAAAGCGAGGTCTAGGTGTACA.................................................... 22 0 1 1.00 1 0 0 0 1
CGCAACCCTTATTGTTAGTT....................................................................................................................................................................... 20 3 13 0.54 7 0 5 2 0
................................................................................................................GTAAAGCGAGGTCTAGGTGTA...................................................... 21 0 2 0.50 1 1 0 0 0
.................................................................................................................TAAAGCGAGGTCTAGGTGTAAAC................................................... 23 1 2 0.50 1 1 0 0 0
.............................................................................................................AACGTAAAGCGAGGTCTAGGTGT....................................................... 23 0 2 0.50 1 1 0 0 0
.................................................................................................................TAAAGCGAGGTCTAGGTGT....................................................... 19 0 2 0.50 1 1 0 0 0
.................................................................................................................TAAAGCGAGGTCTAGGTG........................................................ 18 0 2 0.50 1 1 0 0 0
.GCAACCCTTATTGTTAGT........................................................................................................................................................................ 18 2 10 0.10 1 0 1 0 0
...............................................TACACCTAGACCTCGCTTTGCG...................................................................................................................... 22 0 20 0.10 2 0 2 0 0
..............................................ATACACCTAGCCCTCGCCTTCCGT..................................................................................................................... 24 3 20 0.05 1 0 0 0 1
...................................................................CGTCGTTTCAGTTTGCGTCGTGTT................................................................................................ 24 0 20 0.05 1 0 1 0 0
..............................................................................TTTGCGTCGTGATTTTTTGGAACG..................................................................................... 24 1 20 0.05 1 0 1 0 0

Anti-sense strand reads

ACGTAGAGAATAACAATCAATATTTCATTCAAACAGAGTATAACCTTATGTGGATCTGGAGCGAAACGCAGCAAAGTCAAACGCAGCACAAAAAAACCTTGCATAGGGGTTGCATTTCGCTCCAGATCCACATGTGTTTTAATTATGTATGATAAATGTACTCATCTTATTTAGAAACCTGGGCTTA
************************************((((((((((((((((((((((((((...((.....))....))))))))........)))))))))))))))))).......................**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V119
head
 V118
embryo
 M020
head
 V117
male body
.............................................................................................................TTGCATTTCGCTCCAGATCCA......................................................... 21 0 2 0.50 1 0 1 0 0 0
.............................................................................CAAACGCAGCACAAAAAAACCTTGCAT................................................................................... 27 0 20 0.15 3 3 0 0 0 0
....................................................................................AGCACAAAAAAACCTTGCATAGGGGT............................................................................. 26 0 20 0.10 2 0 0 2 0 0
...................................................................................................................TTCGCTCCAGATCCACATGT.................................................... 20 0 13 0.08 1 0 0 1 0 0
......................................................................GCAAAGTCAAACGCAGCACAAAAAAA........................................................................................... 26 0 20 0.05 1 1 0 0 0 0
....................................................................................AGCACAAAAAAACCTTGCATA.................................................................................. 21 0 20 0.05 1 1 0 0 0 0
...................................................................GCAGCAAAGTCAAACGCAGCACAAAAA............................................................................................. 27 0 20 0.05 1 1 0 0 0 0
..................................................TGGATCTGGAGCGAAACGCAG.................................................................................................................... 21 0 20 0.05 1 0 0 0 1 0
..............................................................GAAACGCAGCAAAGTCAAACGCAGCAC.................................................................................................. 27 0 20 0.05 1 1 0 0 0 0
.....................................................................AGCAAAGTCAAACGCAGCACA................................................................................................. 21 0 20 0.05 1 1 0 0 0 0
.....................................................................AGCAAAGTCAAACGCAGCACAAAAA............................................................................................. 25 0 20 0.05 1 1 0 0 0 0
.................................................GTGGATCTGGAGCGAAACGCAGC................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
....................................................................CAGCAAAGTCAAACGCAGCACAAAAC............................................................................................. 26 1 20 0.05 1 1 0 0 0 0
................................................................................ACGCAGCACAAAAAAACCTTGCAT................................................................................... 24 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................CCACATGCGAGTTAATTAT......................................... 19 3 20 0.05 1 0 0 1 0 0
........................................................................AAAGTCAAACGCAGCACAAAAAAACCTT....................................................................................... 28 0 20 0.05 1 0 0 1 0 0
..............................................TATGTGGATCTGGAGCGAAACGCAG.................................................................................................................... 25 0 20 0.05 1 0 0 0 0 1
..................................................................CGCAGCAAAGTCAAACGCAGCACAAAA.............................................................................................. 27 0 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004514:3361373-3361559 - dwi_164 TGCATCTCTT--ATTGTTAGTTATAAAGTAAGTTTGTCTCATATTGGAATACACCTAGACCTCGCTTTGCGTCGTTTCAGTTTGCGTCGTGTTTTTTTGGAACGTATCCCCAACGTAAAGCGAGGTCTAGGTGTACACAAAATTAATACATACTATTTACATGAGTAGAATAAATCTT-----------TGGACCCGAAT
droKik1 scf7180000302476:2334781-2334957 - TGCCAATTTTGAATTTTTAG----AACGTAAC---CCCTTATTTTGTACTGAATCCATGTTTCGCTTAACACGATTTCGCTTAACACGAGGTTTTCTAGGAACGTAACCCCCGTGTTAAGCGAGGGCCAGGTGTATAC----------------ATTTATATAACTGTAAAAAATATTAGTTTATAAATTAGCCCCCAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TGCATCTCTT--ATTGTTAGTTATAAAGTAAGTTTGTCTCATATTGGAATACACCTAGACCTCGCTTTGCGTCGTTTCAGTTTGCGTCGTGTTTTTTTGGAACGTATCCCCAACGTAAAGCGAGGTCTAGGTGTACACAAAATTAATACATACTATTTACATGAGTAGAATAAATCTT-----------TGGACCCGAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................TAAAGCGAGGTCTAGGTGTACAC..............................................................23113.0013002011
...................................................................................................................TAAAGCGAGGTCTAGGTGTACA...............................................................2211.00100010
..................................................................................................................GTAAAGCGAGGTCTAGGTGTA.................................................................2120.50100001
...............................................................................................................AACGTAAAGCGAGGTCTAGGTGT..................................................................2320.50100001
...................................................................................................................TAAAGCGAGGTCTAGGTGT..................................................................1920.50100001
...................................................................................................................TAAAGCGAGGTCTAGGTG...................................................................1820.50100001
.................................................TACACCTAGACCTCGCTTTGCG.................................................................................................................................22200.10202000
.....................................................................CGTCGTTTCAGTTTGCGTCGTGTT...........................................................................................................24200.05101000
droKik1
TGCCAATTTTGAATTTTTAG----AACGTAAC---CCCTTATTTTGTACTGAATCCATGTTTCGCTTAACACGATTTCGCTTAACACGAGGTTTTCTAGGAACGTAACCCCCGTGTTAAGCGAGGGCCAGGTGTATAC----------------ATTTATATAACTGTAAAAAATATTAGTTTATAAATTAGCCCCCAAASizeHit CountTotal NormTotal
No Reads

Generated: 05/15/2015 at 02:53 PM