ID:

dwi_1609

 Coordinate:

scf2_1100000004585:290926-291076 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-21.2 -21.2

Flybase annnotation

exon [dwil_GLEANR_8642:2]; CDS [Dwil\GK24518-cds]; intron [Dwil\GK24518-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTCAACACTGAAATCTCGAGTAGCTTAAGTAAATATTTACCATTCTCATTAATAATTTCACTAAAAATAATTAAAATAAAAATAATTTGATTAGTTTATATTTTAATAAATTAAATTTCCGAATGTTTTCTTCCACAGCTTGATTTGCTAGTGCAGCAAAACGAGCATATGGCGAATTCATTGGATCGTCAGTTCGACAGGCAGCATGCGCCTCAACGGTTACTCACATCAGCGGCAGCACTGATACTAG
***********************************************************************************************************************((.((((..(((..(((..(((((.((((((.....)))))).)))))...))).)))..))))))....************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
.........................................................................................................................................................................................................................CGGTTACTCACATCAGCGGCAGCA.......... 24 0 1 5.00 5 5 0 0
.........................................................................................................................................................................................................................CGGTTACTCACATCAGCGGCAGCACT........ 26 0 1 3.00 3 3 0 0
..............................................................................................................................................................................................CAGTTCGACAGGCAGCATGCGC....................................... 22 0 1 3.00 3 3 0 0
..............................................................................................................................................................................................CAGTTCGACAGGCAGCATGCGCCT..................................... 24 0 1 2.00 2 2 0 0
........................................................................................................................................................................TATGGCGAATTCATTGGATCG.............................................................. 21 0 1 2.00 2 0 2 0
......................................................................................................................................................................................TGGATCGTCAGTTCGACAGGCAGCATG.......................................... 27 0 1 2.00 2 2 0 0
..........................................................................................................................................................................................................................GGTTACTCACATCAGCGGCAGC........... 22 0 1 1.00 1 1 0 0
......................................................................................................................................................................................TGGATCGTCAGTTCGACAGGCAGCA............................................ 25 0 1 1.00 1 1 0 0
...........................................................................................................................................................AGCAAAACGAGCATATGGCGAATTCAT..................................................................... 27 0 1 1.00 1 1 0 0
.........................................................................................................................................................................................................................CGGTTACTCACATCAGCGGCAGCACTG....... 27 0 1 1.00 1 0 1 0
..........................................................................................................................................................................................TCGTCAGTTCGACAGGCAGCA............................................ 21 0 1 1.00 1 0 1 0
.........................................................................................................................................................................................................................CGGTTACTCACATCAGCGGCAG............ 22 0 1 1.00 1 1 0 0
................................................................................................................................................................AACGAGCATATGGCGAATTCATTGGA................................................................. 26 0 1 1.00 1 1 0 0
..............................................................................................................................................................................................CAGTTCGACAAGCAGCATGCACT...................................... 23 3 1 1.00 1 1 0 0
.........................................................................................................................................................................ATGGCGAATTCATTGGATCGT............................................................. 21 0 1 1.00 1 0 1 0
..................................................................................................................................................TGCTAGTGCAGCAAAACGAGCATATGG.............................................................................. 27 0 1 1.00 1 0 1 0
.......................................................................................................................CCGAATGTTTTCTTCCACAGCTTG............................................................................................................ 24 0 1 1.00 1 1 0 0
...........................................................................................................................ATGTTTTCTTCCACAGCTTGA........................................................................................................... 21 0 1 1.00 1 1 0 0
....................................................................................................................................................................................................................CTCAACGGTTACTCACATCAG.................. 21 0 1 1.00 1 0 1 0
..........................................................................................................................................................................................................................GGTTATTCACATCAGCGGCAGCAC......... 24 1 1 1.00 1 1 0 0
.........................................................................................................................................................................................................................CGGTTACTCACATCAGCGG............... 19 0 1 1.00 1 1 0 0
.........................................................................................................................................................................................................................CGGTTACTCACATCAGCGGCAGC........... 23 0 1 1.00 1 1 0 0
.............................................................................................................................................................................................................................TACTCACGTCAGCGGCAGCACTGA...... 24 1 1 1.00 1 0 1 0
.............................................................................................................................................................................................................................TACTCACATCAGCGGCAGCACTGA...... 24 0 1 1.00 1 1 0 0
........................................................................................................................................................TGCAGCAAAACGAGCATATGGCGAATT........................................................................ 27 0 1 1.00 1 0 1 0
........................................................................................................................................................................................................................ACGGTTACTCACATCAGCGGCAG............ 23 0 1 1.00 1 1 0 0
.............................................................................................................................................TGATTTGCTAGTGCAGCAAAACGAGCA................................................................................... 27 0 1 1.00 1 0 1 0
..........................................................................................................................AATGTTTTCTTCCACAGCTTGATT......................................................................................................... 24 0 1 1.00 1 1 0 0
..........................................................................................................................................................................TGGCGAATTCATTGGATCGTC............................................................ 21 0 1 1.00 1 1 0 0
........................................................................................................................CGAATGTTTTCTTCCACAGCTTGATT......................................................................................................... 26 0 1 1.00 1 1 0 0
.........................................................................................................................................................................................................................CGGTTACTCACATCAGCGGCA............. 21 0 1 1.00 1 1 0 0
....................................................................................................................................TCCACAGCTTGATTTGCTAGTGCAGCAA........................................................................................... 28 0 1 1.00 1 1 0 0
......................................................................................................................................................................................TGGATCGTCAGTTCGACAGGCAG.............................................. 23 0 1 1.00 1 1 0 0
..............................................................................................................................................................................................................................ACTCACATCAGCGGCAGCACTGA...... 23 0 1 1.00 1 0 1 0
....................................................................TAATTAAAATAAAAATAATTTGATTAGT........................................................................................................................................................... 28 0 2 0.50 1 1 0 0
..TCAACACTGAAATCTCGAGTAGCTT................................................................................................................................................................................................................................ 25 0 20 0.40 8 8 0 0
.................................................................................................................................................................................CTAATTGGATCGCCAGTT........................................................ 18 3 20 0.05 1 0 0 1
..TCAACACTGAAATCTCGAGTAGC.................................................................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0
GTTCAACACTGAAATCTCGAGTAGCT................................................................................................................................................................................................................................. 26 1 20 0.05 1 1 0 0
....AACACTGAAATCTCGAGTAGCTTAAG............................................................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0
............AATCTCGAGTAGCTTAAGTAAATA....................................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0

Anti-sense strand reads

AAAGTTGTGACTTTAGAGCTCATCGAATTCATTTATAAATGGTAAGAGTAATTATTAAAGTGATTTTTATTAATTTTATTTTTATTAAACTAATCAAATATAAAATTATTTAATTTAAAGGCTTACAAAAGAAGGTGTCGAACTAAACGATCACGTCGTTTTGCTCGTATACCGCTTAAGTAACCTAGCAGTCAAGCTGTCCGTCGTACGCGGAGTTGCCAATGAGTGTAGTCGCCGTCGTGACTATGATC
**************************************************************((.((((..(((..(((..(((((.((((((.....)))))).)))))...))).)))..))))))....*********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body
................................................................................................................................................AAACGATCACGTCGTTTTGCTCGTAT................................................................................. 26 0 1 51.00 51 5 46 0
.........................................................................................................................................................................................................CGTCGTACGCGGAGTTGCCAATGAGT........................ 26 0 1 45.00 45 25 19 1
........................................................................................................................................................................................................CCGTCGTACGCGGAGTTGCCAATGAGT........................ 27 0 1 42.00 42 32 8 2
...........................................................................................................................................................................................................TCGTACGCGGAGTTGCCAATGAGT........................ 24 0 1 29.00 29 5 24 0
...............................................................................................................................................................................TTAAGTAACCTAGCAGTCAAGCTGT................................................... 25 0 1 23.00 23 20 3 0
..........................................................................................................................................................................................................GTCGTACGCGGAGTTGCCAATGAGT........................ 25 0 1 22.00 22 17 5 0
............................................................................................................................................................................................................CGTACGCGGAGTTGCCAATGAGT........................ 23 0 1 20.00 20 12 6 2
.....................................................................................................................................................................CGTATACCGCTTAAGTAACCTAGCAGT........................................................... 27 0 1 12.00 12 12 0 0
...........................................................................................................................................................................CCGCTTAAGTAACCTAGCAGTCAAGC...................................................... 26 0 1 10.00 10 10 0 0
..........................................................................................................................................................................ACCGCTTAAGTAACCTAGCAGTCAAGC...................................................... 27 0 1 10.00 10 10 0 0
............................TCATTTATAAATGGTAAGAGTAATTAT.................................................................................................................................................................................................... 27 0 2 9.50 19 5 14 0
...............................................................................................................................................TAAACGATCACGTCGTTTTGCTCGTAT................................................................................. 27 0 1 9.00 9 3 6 0
..............................................................................................................................................................................................................TACGCGGAGTTGCCAATGAGTGTAGT................... 26 0 1 8.00 8 2 4 2
................................................................................................................................................................................TAAGTAACCTAGCAGTCAAGCTGT................................................... 24 0 1 8.00 8 8 0 0
............................TCATTTATAAATGGTAAGAGTAAT....................................................................................................................................................................................................... 24 0 2 7.50 15 3 12 0
................................................................................................................................................................................TAAGTAACCTAGCAGTCAAGCTGTCCGT............................................... 28 0 1 7.00 7 6 1 0
...............................................................................................................................................................................................................ACGCGGAGTTGCCAATGAGTGTAGT................... 25 0 1 6.00 6 4 2 0
..........................................................................................................................................................................ACCGCTTAAGTAACCTAGCAGTCAAGCT..................................................... 28 0 1 6.00 6 6 0 0
.......................................................................................................................................................................................................TCCGTCGTACGCGGAGTTGCCAATGAGT........................ 28 0 1 6.00 6 1 5 0
......................................................................................................................................................................................................GTCCGTCGTACGCGGAGTTGCCAATGAGT........................ 29 0 1 6.00 6 6 0 0
...........................................................................................................................................................................CCGCTTAAGTAACCTAGCAGTCAAGCT..................................................... 27 0 1 5.00 5 4 1 0
............................................................................................................................................................................CGCTTAAGTAACCTAGCAGTCAAGCTGT................................................... 28 0 1 5.00 5 3 2 0
...............................................................................................................................................................TTTGCTCGTATACCGCTTAAGTAACCT................................................................. 27 0 1 4.00 4 3 1 0
...........................................................................................................................................................................CCGCTTAAGTAACCTAGCAGTCAAGCTGT................................................... 29 0 1 4.00 4 4 0 0
...................................................................................................................................AAGGTGTCGAACTAAACGATCACGTCGT............................................................................................ 28 0 1 4.00 4 4 0 0
............................................................................................................................................................CGTTTTGCTCGTATACCGCTTAAGT...................................................................... 25 0 1 4.00 4 4 0 0
..................................................................................................................................................................................................................CGGAGTTGCCAATGAGTGTAGT................... 22 0 1 4.00 4 3 1 0
.........................................................................................................................................................................................................CGTCGTACGCGGAGTTGCCAATGAG......................... 25 0 1 4.00 4 3 1 0
......................................................................................................................................................TCACGTCGTTTTGCTCGTATACCGCT........................................................................... 26 0 1 3.00 3 3 0 0
............................................................................................................................................................................................................CGTACGCGGAGTTGCCAATGAGTG....................... 24 0 1 3.00 3 3 0 0
......................................................................................................................................................................GTATACCGCTTAAGTAACCTAGCAGT........................................................... 26 0 1 3.00 3 2 1 0
................................................................................................................................................................................................................CGCGGAGTTGCCAATGAGTGTAGT................... 24 0 1 3.00 3 3 0 0
........................................................................................................................................................................................................TCGTCGTACGCGGAGTTGCCAATGAGT........................ 27 1 1 3.00 3 3 0 0
.............................................................................................................TTAATTTAAAGGCTTACAAAAGAAGGT................................................................................................................... 27 0 2 2.50 5 3 2 0
............................................................................................................................................................................................................CGTACGCGGAGTTGCCAATGAGTGTAGT................... 28 0 1 2.00 2 2 0 0
....................................................................................................................................................................TCGTATACCGCTTAAGTAACCTAGCAGT........................................................... 28 0 1 2.00 2 2 0 0
................................................................................................................................................AAACGATCACGTCGTTTTGCTCGTA.................................................................................. 25 0 1 2.00 2 1 1 0
...............................................................................................................................................................................TTAAGTAACCTAGCAGTCAAGCTG.................................................... 24 0 1 2.00 2 2 0 0
..........................................................................................................................................................................................................GTCGTACGCGGAGTTGCCAATGAG......................... 24 0 1 2.00 2 2 0 0
...................................................................................................................................................................................................................GGAGTTGCCAATGAGTGTAGTCGCCGT............. 27 0 1 2.00 2 1 0 1
................................................................................................................................................................................................................CGCGGAGTTGCCAATGAGTCTAGT................... 24 1 1 2.00 2 2 0 0
.....................................................................................................................................................................CGTATACCGCTTAAGTAACCTAGCAG............................................................ 26 0 1 2.00 2 2 0 0
................................................................................................................................................AAACGATCACGTCGTTTTGCTCGT................................................................................... 24 0 1 2.00 2 0 2 0
..........................................................................................................................................CGAACTAAACGATCACGTCGTTTTGCT...................................................................................... 27 0 1 2.00 2 2 0 0
...................................................................................................................................................CGATCACGTCGTTTTGCTCGTATACCGCT........................................................................... 29 0 1 2.00 2 2 0 0
...............................................................................................................................................TAAACGATCACGTCGTTTTGCTCGT................................................................................... 25 0 1 2.00 2 1 1 0
.................................................................................................................................................................................................................GCGGAGTTGCCAATGAGTGTAGT................... 23 0 1 2.00 2 1 1 0
........................................................................................................................................................................................................ATGTCGTACGCGGAGTTGCCAATGAGT........................ 27 2 1 2.00 2 2 0 0
.........................................................................................................................................................................TACCGCTTAAGTAACCTAGCAGTCAAGC...................................................... 28 0 1 2.00 2 2 0 0
............................................................................................................................................................................................................CGTACGCGGAGTTGCCAATGAGTGT...................... 25 0 1 2.00 2 0 2 0
...........................TTCATTTATAAATGGTAAGAGTAAT....................................................................................................................................................................................................... 25 0 2 1.50 3 0 3 0
........................................GGTAAGAGTAATTATTAAAGTGATT.......................................................................................................................................................................................... 25 0 2 1.50 3 2 1 0
..........................................................................................................................................................................ACCGCTTAAGTAACCTAGCAGTCA......................................................... 24 0 1 1.00 1 1 0 0
...............................................................................................................................................................................TTAAGTAACCTAGCAGTGAAGCTGTCCGT............................................... 29 1 1 1.00 1 1 0 0
................................................................................................................................................AAACGATCACGTCGTTTTGCTCG.................................................................................... 23 0 1 1.00 1 1 0 0
...........................................................................................................................................................................................................TCGTACGCGGAGTTGCCAATGAGTGT...................... 26 0 1 1.00 1 0 1 0
.....................................................................................................................................................................................AACCTAGCAGTCAAGCTGTCCGTCGT............................................ 26 0 1 1.00 1 1 0 0
.............................CATTTATAAATGGTAAGAGTAAT....................................................................................................................................................................................................... 23 0 2 1.00 2 0 2 0
....................................................................................................................................................GATCACGTCGTTTTGCTCGTATACCGC............................................................................ 27 0 1 1.00 1 1 0 0
................................................................................................................................................AAACGATCAAGTCGTTTTGCTCGTAT................................................................................. 26 1 1 1.00 1 0 1 0
............................................................................................................................................................................CGCTTAAGTAACCTAGCAGTCA......................................................... 22 0 1 1.00 1 1 0 0
.............................................................................................................................................ACTAAACGATCACGTCGTTTTGCTCG.................................................................................... 26 0 1 1.00 1 1 0 0
......................................................................................................................................................................................................GTCCGTCGTACGCCGAGTTGCCAATGAGT........................ 29 1 1 1.00 1 1 0 0
........................................................................................................................................GTCGAACTAAACGATCACGTCGTTT.......................................................................................... 25 0 1 1.00 1 1 0 0
................................................................................................................................................................................................................CGCGGAGTTGCCCATGAGTGTAGT................... 24 1 1 1.00 1 1 0 0
................................................................................................................................................................................................................CGCGGAGTTGCCAATGAGTGTAGTC.................. 25 0 1 1.00 1 1 0 0
.........................................................................................................................................................................................................CGTCGTACGCGGAGTTGCCCATGAGT........................ 26 1 1 1.00 1 0 1 0
...........................................................................................................................................................................CCGCTTAAGTAACCTAGCAGTCAAG....................................................... 25 0 1 1.00 1 1 0 0
.............................................................................................................................................................................GCTTAAGTAACCTAGCAGTCAAGCTGT................................................... 27 0 1 1.00 1 1 0 0
........................................................................................................................................................................................................................TGCCAATGAGTGTAGTCGCCGTCGT.......... 25 0 1 1.00 1 0 1 0
................................................................................................................................................................TTGCTCGTATACCGCTTAAGTAACCT................................................................. 26 0 1 1.00 1 1 0 0
..............................................................................................................................................................................CTTAAGTAACCTAGCAGTCAAGCTGT................................................... 26 0 1 1.00 1 1 0 0
.....................................................................................................................................................................................AACCTAGCAGTCAAGCTGTCCGTCG............................................. 25 0 1 1.00 1 1 0 0
...............................................................................................................................................................TTTGCTCGTAGACCGCTTAAGT...................................................................... 22 1 1 1.00 1 1 0 0
...........................................................................................................................................................................................................TCGTACGCGGAGTTGCCAATGAGTG....................... 25 0 1 1.00 1 0 1 0
..............................................................................................................................................CTAAACGATCACGTCGTTTTGCTCGTAT................................................................................. 28 0 1 1.00 1 0 1 0
.....................................................................................................................................................................................................TGTCCGTCGTACGCGGAGTTGCCAA............................. 25 0 1 1.00 1 1 0 0
.......................CGAATTCATTTATAAATGGTAAGAGT.......................................................................................................................................................................................................... 26 0 2 1.00 2 0 2 0
..........................................................................................................................................................GTCGTTTTGCTCGTATACCGCTTAAGT...................................................................... 27 0 1 1.00 1 1 0 0
............................................................................................................................................................CGTTTTGCTCGTATACCGCTTAAGTA..................................................................... 26 0 1 1.00 1 1 0 0
................................................................................................................................................AAACGATCACGTCGTTTTGCTCGTATA................................................................................ 27 0 1 1.00 1 0 1 0
.................................................................................................................................................................................................................GCGGAGTTGCCAATGAGT........................ 18 0 1 1.00 1 1 0 0
.........................................................................................................................................................................................................CGTCGTACGCGGAGTTGCCAAGGAGT........................ 26 1 1 1.00 1 1 0 0
.................................................................................................................................................................................AAGTAACCTAGCAGTCAAGCTGTCCGT............................................... 27 0 1 1.00 1 1 0 0
.......................................................................................................................................................................................................ACCGTCGTACGCGGAGTTGCCAATGA.......................... 26 1 1 1.00 1 1 0 0
.......................................................................................................................................................CACGTCGTTTTGCTCTTATACCGCTTA......................................................................... 27 1 1 1.00 1 1 0 0
......................................................................................................................................................TCACGTCGTTTTGCTCGTATACCG............................................................................. 24 0 1 1.00 1 1 0 0
.........................................................................................................................................................................................................................GCCAATGAGTGTAGTCGCCGTCGTGACT...... 28 0 1 1.00 1 1 0 0
....................................................................................................................................AGGTGTCGAACTAAACGATCACGTCGTT........................................................................................... 28 0 1 1.00 1 1 0 0
.........................................................................................................................................................................................................CGTCATACGCGGAGTTGCCAATGAGT........................ 26 1 1 1.00 1 0 1 0
...........................................................................................................................................................................................................TCGTACGCGGAGTTGCCAATG........................... 21 0 1 1.00 1 1 0 0
..............................................................................................................................................CTAAACGATCACGTCGTTTTGCTCGT................................................................................... 26 0 1 1.00 1 1 0 0
...................................................................................................................................................................................................................GGAGTTGCCAATGAGTGTAGTCGCCG.............. 26 0 1 1.00 1 1 0 0
.........................................................................................................................................................................................................CGTCGTACGCGAAGTTGCCAATGAGT........................ 26 1 1 1.00 1 1 0 0
......................................ATGGTAAGAGTAATTATTAAAGTGAT........................................................................................................................................................................................... 26 0 2 1.00 2 1 1 0
..........................................................................................................................................................................................................GTCCTACGCGGAGTTGCCAATGAGT........................ 25 1 1 1.00 1 0 1 0
...................................................................................................................................................................................................................GGAGTTGCCAATGAGTGTAGTCGC................ 24 0 1 1.00 1 0 1 0
.............................................................................................................................................................................................................GTACGCGGAGTTGCCAATGAGTGTAGTC.................. 28 0 1 1.00 1 1 0 0
...............................................................................................................................................................................................................ACGCGGAGTTGCCAATGAGTGCA..................... 23 1 1 1.00 1 1 0 0
...........................................................................................................................................................................CCGCTTAAGTAACCTAGCAGTCAAGCTG.................................................... 28 0 1 1.00 1 1 0 0
........................................................................................................................................................................................................CCGTCGTACGCGGAGTTGCCAATGAG......................... 26 0 1 1.00 1 1 0 0
.....................................................................................................................................................................................AACCTAGCAGTCAAGCTGTCCGT............................................... 23 0 1 1.00 1 1 0 0
...........................................................................................................................................................................................................TCGTACGCTGAGTTGCCAATGAGT........................ 24 1 1 1.00 1 0 1 0
...................................................................................................................................................................CTCGTATACCGCTTAAGTAACCTAGCAGT........................................................... 29 0 1 1.00 1 1 0 0
..................................................................................................................................................................................AGTAACCTAGCAGTCAAGCTGT................................................... 22 0 1 1.00 1 1 0 0
........................................................................................................................................................................................................CCGTCGTACGCGGAGCTGCCAATGAGT........................ 27 1 1 1.00 1 1 0 0
....................................................................................................................................................................................TAACCTAGCAGTCAAGCTGTCCGT............................................... 24 0 1 1.00 1 1 0 0
.........................................................................................................................CTTACAAAAGAAGGTGTCGAACTAAA........................................................................................................ 26 0 1 1.00 1 1 0 0
...................................................................................................................................................CGATCACGTCGTTTTGCTCGTAT................................................................................. 23 0 1 1.00 1 1 0 0
........................................GGTAAGAGTAATTATTAAAGTGATTT......................................................................................................................................................................................... 26 0 2 1.00 2 1 1 0
.......................................................................................................................................................................................................TCCGTCGTACGCGGAGTTGCCAAT............................ 24 0 1 1.00 1 0 1 0
....................................................................................................................................................GATCACGTCGTTTTGCTCGTATACCGCT........................................................................... 28 0 1 1.00 1 0 1 0
................................................................................................................................................TAACGATCACGTCGTTTTGCTCGTAT................................................................................. 26 1 1 1.00 1 0 1 0
................................................................................................................................................CAACGATCACGTCGTTTTGCTCGTAT................................................................................. 26 1 1 1.00 1 0 1 0
.............................................................................................................................................................................................................................GGTAGTGTAGTCGCCGTCGTGACTAT.... 26 3 1 1.00 1 1 0 0
.........................................................................................................................................................................................................CGTCGTACGCGTAGTTGCCAATGAGT........................ 26 1 1 1.00 1 0 1 0
.......................................................................................................................................TGTCGAACTAAACGATCACGTCGTTT.......................................................................................... 26 0 1 1.00 1 1 0 0
..........................................................................................................................................................................................AGCAGTCAAGCTGTCCGTCGT............................................ 21 0 1 1.00 1 0 1 0
......................................................................................................................................GTGTCGAACTAAACGATCACGTCGT............................................................................................ 25 0 1 1.00 1 1 0 0
...............................................................................................................................................................................TTAAGTAACCTAGCAGTCAAGCAGT................................................... 25 1 1 1.00 1 0 1 0
.............................................................................................................................................................................................................GTACGCGGAGTTGCCAATGAGTGTAGT................... 27 0 1 1.00 1 1 0 0
........................................................................................................................................................................................................AAGTCGTACGCGGAGTTGCCAATGAGT........................ 27 2 1 1.00 1 0 1 0
.......................................................................................................................................TGTCGAACTAAACGATCACGTCGT............................................................................................ 24 0 1 1.00 1 0 1 0
............................................................................................................................................................CGTTTTGCTCGTATACCGCTTAAG....................................................................... 24 0 1 1.00 1 1 0 0
...................................................................................................................................AAGGTGTCGAACTAAACGATC................................................................................................... 21 0 1 1.00 1 0 1 0
...............................................................................................................................................................................TTAAGTAACCTAGGAGTCAAGCTGT................................................... 25 1 1 1.00 1 1 0 0
............................................................................................................................................................................CGCTTAAGTAACCTAGCAGTCAAGCTG.................................................... 27 0 1 1.00 1 1 0 0
................................................................................................................................................AAACGATCACGTTGTTTTGCTCGTAT................................................................................. 26 1 1 1.00 1 0 1 0
............................................................................................................................................................................................................CGTACGCGGAGTTGCCAATGAG......................... 22 0 1 1.00 1 1 0 0
..............................................................................................................................................................................................................AACGCGGAGTTGCCAATGAGTGTAGT................... 26 1 1 1.00 1 1 0 0
...................................................................................................................................................................................GTAACCTAGCAGTCAAGCTGTCCGT............................................... 25 0 1 1.00 1 1 0 0
......................................................................................................................................................................................................GTCCGTCGTACGCGGAGTTGCCAATGAG......................... 28 0 1 1.00 1 1 0 0
.......................CGAATTCATTTATAAATGGTAAGAGTAAT....................................................................................................................................................................................................... 29 0 2 0.50 1 1 0 0
......................................ATGGTAAGAGTAATTATTAAAGTGATT.......................................................................................................................................................................................... 27 0 2 0.50 1 0 1 0
................................TTATAAATGGTAAGAGTAATTATTAA................................................................................................................................................................................................. 26 0 2 0.50 1 0 1 0
............................TCATTTATAAACGGTAAGAGTAAT....................................................................................................................................................................................................... 24 1 2 0.50 1 0 1 0
.......................................TGGTAAGAGTAATTATTAAATT.............................................................................................................................................................................................. 22 1 2 0.50 1 0 1 0
..........................................TAAGAGTAATTATTAAAGTGAT........................................................................................................................................................................................... 22 0 2 0.50 1 1 0 0
............................TCATTTATAAATGGTGAGAGTAATTAT.................................................................................................................................................................................................... 27 1 2 0.50 1 1 0 0
.............................................................................................................TTAATTTAAAGGCTTACAAAAGAAGGTGT................................................................................................................. 29 0 2 0.50 1 1 0 0
............................TCATTTATAAATGGCAAGAGTAATTAT.................................................................................................................................................................................................... 27 1 2 0.50 1 0 1 0
..........................................GTAGAGTAATTATTAAAGTGATT.......................................................................................................................................................................................... 23 2 2 0.50 1 0 1 0
............................TCATTTATAAATGGTAAGAGCAATTAT.................................................................................................................................................................................................... 27 1 2 0.50 1 0 1 0
....................................AAATGGTAAGAGTAATTATTAAAGT.............................................................................................................................................................................................. 25 0 2 0.50 1 1 0 0
................................................................................................................................................AAACGATAACGTCGTTTTGCTCGT................................................................................... 24 1 2 0.50 1 0 1 0
......................................ATGGTAAGAGTAATTATTAAAGTG............................................................................................................................................................................................. 24 0 2 0.50 1 1 0 0
.............................CATTTATAAATGGTAAGAGTA......................................................................................................................................................................................................... 21 0 2 0.50 1 0 1 0
.............................................................................................................TTAATTTAAAGGCTTACAAAAGAAGG.................................................................................................................... 26 0 2 0.50 1 1 0 0
............................TCATTTATAAATGCTAAGAGTAATTAT.................................................................................................................................................................................................... 27 1 2 0.50 1 0 1 0
............................CCATTTATAAATGGTAAGAGTAATT...................................................................................................................................................................................................... 25 1 2 0.50 1 0 1 0
................................TTATAAATGGTAAGAGTAATTAT.................................................................................................................................................................................................... 23 0 2 0.50 1 0 1 0
...........................................................GTGATTTTTATTAATTTTATTTTTAT...................................................................................................................................................................... 26 0 2 0.50 1 0 1 0
............................TCATTTATAAATGGTAAGAGTAA........................................................................................................................................................................................................ 23 0 2 0.50 1 1 0 0
...............................................GTAATTATTAAAGTGATTTTTAT..................................................................................................................................................................................... 23 0 2 0.50 1 1 0 0
..................................................................................................................TTAAAGGCTTACAAAAGAAGGT................................................................................................................... 22 0 2 0.50 1 1 0 0
..............................................................................................CAAATATAAAATTATTTAATTTAAAGGCT................................................................................................................................ 29 0 2 0.50 1 1 0 0
.................................TATAAATGGTAAGAGTAATTATTAAAGT.............................................................................................................................................................................................. 28 0 2 0.50 1 1 0 0
..........................................................................TTTATTTTTATTAAACTAATCAAATATA..................................................................................................................................................... 28 0 2 0.50 1 1 0 0
..............................ATTTATAAATGGTAAGAGTAATTAT.................................................................................................................................................................................................... 25 0 2 0.50 1 1 0 0
....................................................................................................TAAAATTATTTAATTTAAAGGCTTACAA........................................................................................................................... 28 0 2 0.50 1 1 0 0
................................TTATAAATGGTAAGAGTAATTATTAAAG............................................................................................................................................................................................... 28 0 2 0.50 1 1 0 0
..............AGAGCTCATCGAATTCATTTATAAAT................................................................................................................................................................................................................... 26 0 20 0.40 8 2 6 0
.....TGTGACTTTAGAGCTCATCGAATT.............................................................................................................................................................................................................................. 24 0 20 0.40 8 0 8 0
.....TGTGACTTTAGAGCTCATCGAAT............................................................................................................................................................................................................................... 23 0 20 0.25 5 0 5 0
............TTAGAGCTCATCGAATTCATTTAT....................................................................................................................................................................................................................... 24 0 20 0.20 4 0 4 0
............TTAGAGCTCATCGAATTCATTTATAAAT................................................................................................................................................................................................................... 28 0 20 0.20 4 4 0 0
........GACTTTAGAGCTCATCGAATTCATT.......................................................................................................................................................................................................................... 25 0 20 0.20 4 0 4 0
...GTTGTGACTTTAGAGCTCATCGAATT.............................................................................................................................................................................................................................. 26 0 20 0.15 3 0 3 0
.................................................................................................................................................................................GTGTAACCTAGCAGTCAA........................................................ 18 2 7 0.14 1 1 0 0
......GTGACTTTAGAGCTCATCGAATTCAT........................................................................................................................................................................................................................... 26 0 20 0.10 2 2 0 0
........GACTTTAGAGCTCATCGAATTCATTTAT....................................................................................................................................................................................................................... 28 0 20 0.10 2 0 2 0
......................................................................TAATTTTATTTTTATTAA................................................................................................................................................................... 18 0 12 0.08 1 0 1 0
........GACTTTAGAGCTCATCGAATTCAT........................................................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0
.....TGTGACTTTAGAGCTCATCGAATTC............................................................................................................................................................................................................................. 25 0 20 0.05 1 0 1 0
......GCGACTTTAGAGCTCATCGAAT............................................................................................................................................................................................................................... 22 1 20 0.05 1 0 1 0
..AGTTGTGACTTTAGAGCTCATCGA................................................................................................................................................................................................................................. 24 0 20 0.05 1 0 1 0
.......TGACTTTAGAGCTCATCGAAT............................................................................................................................................................................................................................... 21 0 20 0.05 1 0 1 0
..............AGAGCTCATCGAATTCATTTATAAATGGT................................................................................................................................................................................................................ 29 0 20 0.05 1 1 0 0
.....TGTGACTTTAGAGCTCATGGAATTCAT........................................................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0
AAAGTTGTGACTTTAGAGCTCATCGAAT............................................................................................................................................................................................................................... 28 0 20 0.05 1 0 1 0
.....TGTGACTTTAGAGCTCATCGAATTCA............................................................................................................................................................................................................................ 26 0 20 0.05 1 0 0 1
................AGCTCATCGAATTCATTTATAAATGGT................................................................................................................................................................................................................ 27 0 20 0.05 1 1 0 0
.................GCTCATCGAATTCATTTATAAATGGT................................................................................................................................................................................................................ 26 0 20 0.05 1 1 0 0
...............GAGCTCATCGAATTCATTTAT....................................................................................................................................................................................................................... 21 0 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004585:290876-291126 - dwi_1609 TTTCAACACTGAAATCTCGAGTAGCTTAAGTAAATATTTACCATTCTCATTAATAATTTCACTAAAAATAATTAAAATAAAAATAATTTGATTAGTTTATATTTTAATAAATTAAATTTCCGAATGTTTTCTTCCACAGCTTGATTTGCTAGTGCAGCAAAACGAGCATATGGCGAATTCATTGGATCGTCAGTTCGACAGGCAGCATGCGCCTCAACGGTTACTCACATCAGCGGCAGCACTGATACTAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TTTCAACACTGAAATCTCGAGTAGCTTAAGTAAATATTTACCATTCTCATTAATAATTTCACTAAAAATAATTAAAATAAAAATAATTTGATTAGTTTATATTTTAATAAATTAAATTTCCGAATGTTTTCTTCCACAGCTTGATTTGCTAGTGCAGCAAAACGAGCATATGGCGAATTCATTGGATCGTCAGTTCGACAGGCAGCATGCGCCTCAACGGTTACTCACATCAGCGGCAGCACTGATACTAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................CGGTTACTCACATCAGCGGCAGCA..........2415.00505000
.........................................................................................................................................................................................................................CGGTTACTCACATCAGCGGCAGCACT........2613.00303000
..............................................................................................................................................................................................CAGTTCGACAGGCAGCATGCGC.......................................2213.00303000
..............................................................................................................................................................................................CAGTTCGACAGGCAGCATGCGCCT.....................................2412.00202000
........................................................................................................................................................................TATGGCGAATTCATTGGATCG..............................................................2112.00200020
......................................................................................................................................................................................TGGATCGTCAGTTCGACAGGCAGCATG..........................................2712.00202000
..........................................................................................................................................................................................................................GGTTACTCACATCAGCGGCAGC...........2211.00101000
......................................................................................................................................................................................TGGATCGTCAGTTCGACAGGCAGCA............................................2511.00101000
...........................................................................................................................................................AGCAAAACGAGCATATGGCGAATTCAT.....................................................................2711.00101000
.........................................................................................................................................................................................................................CGGTTACTCACATCAGCGGCAGCACTG.......2711.00100010
..........................................................................................................................................................................................TCGTCAGTTCGACAGGCAGCA............................................2111.00100010
.........................................................................................................................................................................................................................CGGTTACTCACATCAGCGGCAG............2211.00101000
................................................................................................................................................................AACGAGCATATGGCGAATTCATTGGA.................................................................2611.00101000
.........................................................................................................................................................................ATGGCGAATTCATTGGATCGT.............................................................2111.00100010
..................................................................................................................................................TGCTAGTGCAGCAAAACGAGCATATGG..............................................................................2711.00100010
.......................................................................................................................CCGAATGTTTTCTTCCACAGCTTG............................................................................................................2411.00101000
...........................................................................................................................ATGTTTTCTTCCACAGCTTGA...........................................................................................................2111.00101000
....................................................................................................................................................................................................................CTCAACGGTTACTCACATCAG..................2111.00100010
.........................................................................................................................................................................................................................CGGTTACTCACATCAGCGG...............1911.00101000
.........................................................................................................................................................................................................................CGGTTACTCACATCAGCGGCAGC...........2311.00101000
.............................................................................................................................................................................................................................TACTCACATCAGCGGCAGCACTGA......2411.00101000
........................................................................................................................................................TGCAGCAAAACGAGCATATGGCGAATT........................................................................2711.00100010
........................................................................................................................................................................................................................ACGGTTACTCACATCAGCGGCAG............2311.00101000
.............................................................................................................................................TGATTTGCTAGTGCAGCAAAACGAGCA...................................................................................2711.00100010
..........................................................................................................................AATGTTTTCTTCCACAGCTTGATT.........................................................................................................2411.00101000
..........................................................................................................................................................................TGGCGAATTCATTGGATCGTC............................................................2111.00101000
........................................................................................................................CGAATGTTTTCTTCCACAGCTTGATT.........................................................................................................2611.00101000
.........................................................................................................................................................................................................................CGGTTACTCACATCAGCGGCA.............2111.00101000
....................................................................................................................................TCCACAGCTTGATTTGCTAGTGCAGCAA...........................................................................................2811.00101000
......................................................................................................................................................................................TGGATCGTCAGTTCGACAGGCAG..............................................2311.00101000
..............................................................................................................................................................................................................................ACTCACATCAGCGGCAGCACTGA......2311.00100010
....................................................................TAATTAAAATAAAAATAATTTGATTAGT...........................................................................................................................................................2820.50101000
..TCAACACTGAAATCTCGAGTAGCTT................................................................................................................................................................................................................................25200.40808000
..TCAACACTGAAATCTCGAGTAGC..................................................................................................................................................................................................................................23200.05101000
....AACACTGAAATCTCGAGTAGCTTAAG.............................................................................................................................................................................................................................26200.05101000
............AATCTCGAGTAGCTTAAGTAAATA.......................................................................................................................................................................................................................24200.05101000

Generated: 05/18/2015 at 02:00 AM