ID:

dwi_1604

 Coordinate:

scf2_1100000004585:286659-286809 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.4 -14.6 -14.5

Flybase annnotation

CDS [Dwil\GK24518-cds]; exon [dwil_GLEANR_8642:7]; intron [Dwil\GK24518-in]

Repeatable elements

NameClassFamilyStrand
DNAREP1_DYakRCHelitron-

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#####################################-------------
TATTTTCTTGATCAGCATCAACAGCCGATGCTGATTGCCACGCCCCTTTCCGCTTTTAAAAAAACTCGAATTTCTCCCTTAATCAACCTTGTGCAATCAAATTTGGTACACTTAAATTTGATACTAATATCCAGCAAAATACCAAATTTGATCAATATCGGACTAAAAATAGCCAAGTTATGCATATAAATGTTTTTCCAGAAGGCCGAAGTTGGCCGTTGGCTGGTGGAGGCGCTAGTGTGCTCGCATGC
******************************************************************************........((.(((...(((((((((((((...........((((....))))........)))))))))))))..)))..))..................************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
 V117
male body		 V119
head
 M020
head
...................................................................................................................................................................................................TTCCAGAAGGCCGAAGTTGGCCGT................................ 24 0 1 3.00 3 3 0 0 0 0
..............................................................................................................................................................................................TGTTTTTCCAGAAGGCCGAAGTTGG.................................... 25 0 1 3.00 3 2 1 0 0 0
..........................................................................................................................................................................................TAAATGTTTTTCCAGAAGGCCGAAGT....................................... 26 0 1 2.00 2 2 0 0 0 0
................................................................................................................................................................................................................................GGTGGAGGCGCTGGTGGGAT....... 20 3 20 1.75 35 0 0 35 0 0
...............................................................................................................................................................................................................................TGGTGGAGGCGCTAGTGTGCTCGC.... 24 0 2 1.50 3 3 0 0 0 0
.................................................................................................................................................................................................TTTTCCAGAAGGCCGAAGTTG..................................... 21 0 1 1.00 1 0 1 0 0 0
..............................................................................TTAATCAACCTTGTGCAATCA........................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0
.....TCTTGATCAGCATCAACAGCCGATGC............................................................................................................................................................................................................................ 26 0 2 1.00 2 0 2 0 0 0
........................................................TAAAAAAACTCGAATTTCTCCCTTAATC....................................................................................................................................................................... 28 0 2 1.00 2 2 0 0 0 0
.......................................................................................................................................................TCAATATCGGACTAAAAATAGCCAAGTT........................................................................ 28 0 1 1.00 1 0 1 0 0 0
....................................................................................................................................................................................TGCATATAAATGTTTTTCCAGAAGGCCG........................................... 28 0 1 1.00 1 1 0 0 0 0
...............................................................................TAATCAACCTTGTGCAATCAAATTTGG................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................TCCAGAAGGCCGAAGTTGGCCGT................................ 23 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................................................TTCCAGAAGGCCGAAGTTGGCCG................................. 23 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................TATGCATATAAATGTTTTTCCAGAAGG.............................................. 27 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................ATAAATGTTTTTCCAGAAGGCCGAAG........................................ 26 0 1 1.00 1 0 1 0 0 0
.............................................................................................................................................................................................ATGTTTTTCCAGAAGGCCGAAGTT...................................... 24 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................CCAAATTTGATCAATATCGGACTAAAAA.................................................................................. 28 0 2 0.50 1 0 1 0 0 0
....TTCTTGATCAGCATCAACAGCCGATGC............................................................................................................................................................................................................................ 27 0 2 0.50 1 0 1 0 0 0
............................TGCTGATTGCCGCGCCCCTTTCCGCT..................................................................................................................................................................................................... 26 1 2 0.50 1 0 1 0 0 0
.....TCTTGATCAGCATCAACAGCCGATG............................................................................................................................................................................................................................. 25 0 2 0.50 1 0 1 0 0 0
.......TTGATCAGCATCAACAGCCGATGCTGA......................................................................................................................................................................................................................... 27 0 2 0.50 1 0 1 0 0 0
..........ATCAGCATCAACAGCCGATGC............................................................................................................................................................................................................................ 21 0 2 0.50 1 1 0 0 0 0
........................................................TAAAAAAACTCGAATTTCTCCCTTAA......................................................................................................................................................................... 26 0 2 0.50 1 0 1 0 0 0
....................................................................................................................................................................................................................TGGCCGTTGGCTGGTGGAGGCGCTAGT............ 27 0 4 0.50 2 1 0 1 0 0
.........................CGATGCTGATTGCCACGCCCC............................................................................................................................................................................................................. 21 0 2 0.50 1 0 1 0 0 0
....TTCTTGATCAGCATCAACAGCCGATG............................................................................................................................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0
.............AGCATCAACAGCCGATGCTGATTGCCA................................................................................................................................................................................................................... 27 0 2 0.50 1 0 1 0 0 0
...............................................................................................................................................................................................................................TGGTGGAGGCGCTAGTGTGCTCGCAT.. 26 0 2 0.50 1 1 0 0 0 0
..........................................................................................................................................................................................................................TTGGCTGGTGGAGGCGCTAGTGTGC........ 25 0 3 0.33 1 1 0 0 0 0
...........................................................................................................................................................................................................................TGGCTGGTGGAGGCGCTAGTGTGCTCT..... 27 1 3 0.33 1 0 1 0 0 0
...............................................TTCCGCTTTTAAAAAAACTCGAATTTC................................................................................................................................................................................. 27 0 3 0.33 1 0 1 0 0 0
...........................................................................................................................................................................................................................TGGCTGGTGGAGGCGCTAGTGTG......... 23 0 3 0.33 1 1 0 0 0 0
...........................................................................................................................................................................................................................TGGCTGGTGGAGGCGCTAGTGTGC........ 24 0 3 0.33 1 1 0 0 0 0
...........................................................................................................................................................................................................................TGGATGGTGGAGGCGCTAGTGTGC........ 24 1 3 0.33 1 1 0 0 0 0
...............................................................................................................................................................................................................................TGGTGGAGGCGCTAGTGTGCTC...... 22 0 3 0.33 1 1 0 0 0 0
...............................................TTCCGCTTTTAAAAAAACTCGAATT................................................................................................................................................................................... 25 0 3 0.33 1 0 1 0 0 0
................................................TCCGCTTTTAAAAAAACTCGAATTTCT................................................................................................................................................................................ 27 0 3 0.33 1 0 1 0 0 0
...............................................................................................................................................................................................................GAAGTTGGCCGTTGGCTGGTG....................... 21 0 16 0.31 5 0 5 0 0 0
....................................................................................................................................................................................................................TGGCCGTTGGCTGGTGGAGGC.................. 21 0 12 0.25 3 3 0 0 0 0
....................................................................................................................................................................................................................TGGCCGTTGGCTGGTGGAGGCGCTAG............. 26 0 10 0.20 2 1 1 0 0 0
....................................................................................................................................................................................................................TGGCCGTTGGCTGGTGGAGGCGCTA.............. 25 0 11 0.18 2 2 0 0 0 0
....................................................................................................................................................................................................................TGGCCGTTGGCTGGTGGAGGCGC................ 23 0 12 0.17 2 0 2 0 0 0
..............................................................................................................................................................................................................CGAAGTTGGCCGTTGGCTGGTGG...................... 23 0 12 0.17 2 1 1 0 0 0
....................................................................................................................................................................................................................TGGCCGTTGGCTGGTGGAGGCG................. 22 0 12 0.17 2 2 0 0 0 0
....................................................................................................................................................................................................................TGGCCGTTGGCTGGTGGAGG................... 20 0 13 0.15 2 2 0 0 0 0
.................................................................................................................................................................................................TTTTCCAGCGGGCCGAAGCT...................................... 20 3 9 0.11 1 0 1 0 0 0
....................................................................................................................................................................................................................TGGCCGTTGGCTGGTGGAT.................... 19 1 20 0.10 2 2 0 0 0 0
.........................................................................................................................................................................................................AAGGCCGAAGTTGGCCGTTGGCTG.......................... 24 0 10 0.10 1 0 1 0 0 0
..................................................................................................................................................................................................................GTTGGCCGTTGGCTGGTGGAGG................... 22 0 11 0.09 1 1 0 0 0 0
...................................................................................................................................................................................................................TTGGCCGTTGGCTGGTGGAGGC.................. 22 0 11 0.09 1 1 0 0 0 0
...............................................................................................................................................................................................................................CGGTGGAGGCGCTGGTGTG......... 19 2 11 0.09 1 0 1 0 0 0
....................................................................................................................................................................................................................TGGCCGTTGGCTGGTGGAGGCGCT............... 24 0 12 0.08 1 0 1 0 0 0
.....................................................................................................................................................................................................ACAGAAGGCAGAAGTTGTCC.................................. 20 3 14 0.07 1 0 0 1 0 0
................................................................................................................................................................................................................................GGTGGAGGCGTTAGTGGG......... 18 2 14 0.07 1 0 1 0 0 0
........................................................................................................................................................................................................................CGTTGGCTGGTGGAGGCGCTA.............. 21 0 14 0.07 1 0 1 0 0 0
................................................................................................................................................................................................................................GGTGGAGGCGCTGGTGCGAT....... 20 3 14 0.07 1 0 0 1 0 0
.......................................................................................................................................................................................................................CCGTTGGCTGGTGGAGGCGCT............... 21 0 15 0.07 1 0 1 0 0 0
..............................................................................................................................................................................................................CGAAGTTGGCCGTTGGCTGG......................... 20 0 15 0.07 1 1 0 0 0 0
..............................................................................................................................................................................................................CGAAGTTGGCCGTTGGCTG.......................... 19 0 15 0.07 1 0 1 0 0 0
.............................................................................................................................................................................................................CCGAAGTTGGCCGTTGGCTGG......................... 21 0 15 0.07 1 0 0 0 1 0
.....................................................................................................................................................................................................................GGCCGTTGGCTGGTGGAG.................... 18 0 16 0.06 1 0 1 0 0 0
......................................................................................................................................................................................................................GCCGTTGGCCGGTGGAGG................... 18 1 17 0.06 1 0 1 0 0 0
....................................................................................................................................................................................................................TGGCCGTTGGCTGGTGGAGGCAA................ 23 2 18 0.06 1 0 1 0 0 0
................................................................................................................................................................................................................AAGTTGGCCGTTGGCTGGTGG...................... 21 0 18 0.06 1 0 1 0 0 0
.............................................................................................................................................................................................ATGTTTTTCCAGATGTCC............................................ 18 2 19 0.05 1 0 0 0 0 1
......CTTGATCAGCATCAACAGCCG................................................................................................................................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

ATAAAAGAACTAGTCGTAGTTGTCGGCTACGACTAACGGTGCGGGGAAAGGCGAAAATTTTTTTGAGCTTAAAGAGGGAATTAGTTGGAACACGTTAGTTTAAACCATGTGAATTTAAACTATGATTATAGGTCGTTTTATGGTTTAAACTAGTTATAGCCTGATTTTTATCGGTTCAATACGTATATTTACAAAAAGGTCTTCCGGCTTCAACCGGCAACCGACCACCTCCGCGATCACACGAGCGTACG
************************************************************************........((.(((...(((((((((((((...........((((....))))........)))))))))))))..)))..))..................****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body
...........................................................................GGGAATTAGTTGGAACACGTTAGTT....................................................................................................................................................... 25 0 1 1.00 1 0 1 0
.......................................................................................................................................................AGTTATAGCCTGATTTTTAT................................................................................ 20 0 1 1.00 1 1 0 0
.....................................................................TAAAGAGGGAATTAGTTGGAACACGT............................................................................................................................................................ 26 0 1 1.00 1 1 0 0
.......................................................................AAGAGGGAATTAGTTGGAACA............................................................................................................................................................... 21 0 1 1.00 1 1 0 0
....................................................................................................................................................................................ACGTATATTTACAAAAAGGTCTTCCGGCT.......................................... 29 0 1 1.00 1 1 0 0
..........................................GGGGAAAGGCGAAAATTTTTTT........................................................................................................................................................................................... 22 0 3 0.67 2 1 1 0
.....................................GGTGCGGGGAAAGGCGAAAAT................................................................................................................................................................................................. 21 0 3 0.67 2 1 0 1
.............................................................................................................................................................................................................GGCTTCAACCGGCAACCGACCACCT..................... 25 0 2 0.50 1 1 0 0
...............GTAGTTGTCGGCTACGACTAACGGT................................................................................................................................................................................................................... 25 0 2 0.50 1 1 0 0
.............................................................................................................................................GGTTTAAACTAGTTATAGCCTGAT...................................................................................... 24 0 2 0.50 1 1 0 0
..................................AACGGTGCGGGGAAAGGCGAAAAT................................................................................................................................................................................................. 24 0 3 0.33 1 1 0 0
..................................................GCGAAAATTTTTTTGAGCTTAAA.................................................................................................................................................................................. 23 0 3 0.33 1 0 1 0
.......................................TGCGGGGAAAGGCGAAAATT................................................................................................................................................................................................ 20 0 3 0.33 1 1 0 0
.............................CGACTAACGGTTCGGGCAAGGG........................................................................................................................................................................................................ 22 3 3 0.33 1 1 0 0
.....................................GGTGCGGGGAAAGGCGAAAA.................................................................................................................................................................................................. 20 0 3 0.33 1 1 0 0
......................................................................................................................................................................................................................CGGCAACCGACCACCTCCGCTATCAC........... 26 1 4 0.25 1 1 0 0
.....................................................AAAATTTTTTTGAGAGTAA................................................................................................................................................................................... 19 2 20 0.15 3 0 3 0
...........................................................................................ACGTTAGTTTAAACCATGTGAA.......................................................................................................................................... 22 0 13 0.08 1 0 1 0
.................................................................................................................................AGGTCGTTTTATGGTTTAA....................................................................................................... 19 0 20 0.05 1 1 0 0
........................................................................................................................TATGATTATAGGCCGTTTTATGGTT.......................................................................................................... 25 1 20 0.05 1 0 1 0
...............................................................................................................................ATAGGTCGTTTTATGGTTTAAACTAGT................................................................................................. 27 0 20 0.05 1 1 0 0
.............................................................................................................................................GGTTTAAACTAATTATAGCCT......................................................................................... 21 1 20 0.05 1 1 0 0
.............................................................................................................................TTATAGGTCGTTTTATGGTTT......................................................................................................... 21 0 20 0.05 1 1 0 0
..................................................................................................................................GGTCGTTTTATGGTTTAAACT.................................................................................................... 21 0 20 0.05 1 0 0 1
..................................................................................................................................GGTCGTTTTATGGTTTAAACTAGTT................................................................................................ 25 0 20 0.05 1 0 1 0
................................CTAACGGTTCGGGCAAGGG........................................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0
........................................................................................................................TATGATTATAGGTCGTTTTATGGT........................................................................................................... 24 0 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004585:286609-286859 - dwi_1604 TA----TTTTCTTG-ATCAGCATCAACAGCCGATGCTGAT--TGCCACGC------------------CCCT-----------------------------TTC----------------C--GCTTT-TAAAAAAACTCGAATTTCTC-------------------------------------------------------------------CCTTAATCA-------ACC-------------------------------------------------------------------------------TTGTGCAATCAAATTTGGTACACTT---------------------------------AAA-T--------TTGATACTAAT----------------------------------------------------ATCCAGCAAAATACCAAATTTGATCAATATCGGA---------------------------------------------------------------------------------------------------------------------CTAAAAATAGCCAAGTTATG------------------------------CATATAAATGTTTTTCCAGAAGGCCGAAGTTGGCCGTTGGCTGGTGGAGGCGCTAGTGTGCTCGCATGC
droVir3 scaffold_12954:1572514-1572705 + TA----TATTGTTG-ATCAACATCAATAGCCGAGTCGGTC-TAGCCATGT------------------CAGTCTG--------TCTGGA--------------------------------------------------------ACAA---------------------------------------------------------------------TT----TTAATGCAAT-----TG---------TAATTTGGGAATACACGAATTATCTGCAGCAAGA--------------------------TAAAATCTAC----------------------------------------------------------------------------------------------------------------------------------------------------------AGATCGGT---------------------------------------------------------------------------------------------------------------------TAAGAAACACCAAGGTTATTGAA-----------GAAAACGTGTTTTGGCTAGTCAC------------------GAATTTGGCTG-------------------------GGCTAGCG
droMoj3 scaffold_6500:31732167-31732343 + TA----TATTCTTG-ATCAGGGCGACGAGCTGAGTTGATC-GCGTCGATT-----------------------T-----------------------------CCGAAGATAAAAGAGCTAGA--GA----------CCTGAATTTTTT--------------------------------------TTTTTAA------------------------AT----T-------ACCATATAA--------A---------------------------------------C--AGCGCGGATGTCGAG---------------------------------------------------------------------T--------TTGCTTTT--------------------------------------------------------------------------------AAAAT--------------------------------------TCGATAAATCATACCGTTATGTT--TTTATC-----------------GAATAA---------------------------------AAACATTCAAGT------------------------------------------------T------------------------------------------------------
droGri2 scaffold_15110:14044786-14044997 + TA----TATTCTTG-TTCAGGATCAATAGCGGAGGCGAAT-TAGCCATGT------------------TCGTTTG--------TCGGAA----C-TCAGAGATC----------------TG-ATTTCCGATAGCAATAAGTGCTACAC---------------------------------------------------------------------TT----TTAAAGGCAGACACTTC---------TAATTAATAAA-----------------------------------------------------------------------------------------TAACATG-----------CAT--------------------------------------------------------------------TTGCATATTATTGATCAACTGCCTAAATTTCATCAAGATCGGA---------------------------------------------------------------------------------------------------------------------TAAGAAAGAGCCAAGTTATACTA-----------GA-------------------AAATATA-TT------------------------------------------------------
dp5 2:28211174-28211394 - TA----TGTTCCTG-ATCAGCATCGATAGCCGAGTCGATT-TAGCCAAGT------------------CTGTCTGTCCATCCACCCATCC-----------GTC----------------T--GATTC-CGC--------------------------------------------------------C-----CCCAAAAAAGCCCGAAAATCTGTGGCAAA---------------------------------------------------------------------------------------CACAAGATACAAGAAAACTAGAAACGCAG---AA------------------------------------------------------C---------------------------------CATAGACAAGGACTATATCTAACAGATTGCCGAATTTGAATCAGAGCGGGCTA----------------------------------------------------TTATTATAGC-----------------CAGAAG----------------------------------------------AAG------------------------------CAAA--TC----AAT------------------------------------------------------
droPer2 scaffold_6:3544906-3545148 - TA----TATTCTTG-ATCAGCATCGATAGCCGAGTCGATT-TAGCCAAGT------------------CTGTCTG--------TCCATCC-----------GTC----------------C--GATTG-GACGCA-------------CTTTTACAAGGGTTTGACCCCTTGC-------------GCC-----CCCAACAAAGCACGAAAATCTTTGGCAAA---------------------------------------------------------------------------------------CACAAGATACAAGAAAACTAGAAACGCAG---AA------------------------------------------------------C---------------------------------CATAGACAAGGACTATATCTAACATATTGCCGAATTTGAATCAGATCGGGCTA----------------------------------------------------TTATTATAGC-----------------CTGAAG----------------------------------------------AAG------------------------------CAAA--TC----AAT------------------------------------------------------
droAna3 scaffold_13258:976922-977159 + TA----TATTCTTG-ATCAGGATCACCTCCTGAGTCGATA-TGACCGTCT----------------GTCGGTCTG--------TCCGTCT-----------GTC----------------T--GTTTC-TACGCAAACTAGTTTCTCAG---------------------------------------------------------------------TTAATTG-------ATTGATCGG--------A---------------------------------------AATGCCATAACTTTGGTGT-------------------T------------------------------------------------T-TTGAAGT-------TAGAACCCATGTTA-----------TATTTGACCAAAATA-TC-------------------TTATGTACAAAATTTCATAAGGATCGGCCGAATATATCCTATAG-----------------------------------------------------------------------------------------C------------------------TGCCATA------------------------------TATGTAACTGATTGATCGGAA------------------------------------------------
droBip1 scf7180000395783:13369-13554 - TC----TATTCTTG-ATTAGGATCACCTTCTGAGTTGATA-AAGGCATGT------------------CCGTCTG--------TCTG---------------TC----------------T--GTTTC-TACGCAAATTAGTCTCTCAG---------------------------------------------------------------------TT----T-------ATTTAAGAA--------A---------------------------------------AATTTTAAAAATTTAT-----TTTAAGATACGTATATACTTTAGAATTAA---GA------------------------------------------------------A---------------------------------CTTAAA----------------------------------CAAGATA--A---------------------------------------------------------------------------------------------TTAAAACTAATTA---------AAATAAAATT----------------------------------------------------------ATAAA------------------------------------------------
droKik1 scf7180000302469:2001442-2001658 - TA----TATTCTTA-ATCAGCATCAAAAACCGATTCGATC-TAGACATGTTTGGGGGAAAAAA--------ATTT--------TTA---------------ATT----------------T--TTTTT-CCCGATATTTTATTG---------------------------------------------TTAAA------------------------AT----T-------GTCATAAAA--------A---------------------------------------AATTATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTTTTGATTTTTTAAAATTCTAAATTTAGTAAGCAGATTTG--TTAAAC-----------------T------------------AGAAA------------------------AAACTAGCA-CAGAAACGTT----------TTCCG--------AATG---------------GAATTTGATGC-------------------------TTTTTCGG
droFic1 scf7180000453932:176489-176710 + TA----TATTCTTG-ATCAGCATCACGATCTGAATCGGAA-TACG----TCTGTAGGCTGCCGCCTGTCCGTCTG--------TCCTCCT-----------GTC----------------T--GTTTC-TATATAAACTAATCTCTCAG---------------------------------------------------------------------TT----TTAAAGCTATCTTGATGAAACTTTA-----------------------------------CCAAAAGTTGTGTAGTTGTGGTGT-------------------TTTC---------------------------------------------------------TAACTGCT----------------------------------------------------ATTGAATTTTGGATTAAATTTTATCAAAATCGGATAA----------------------------------------------------------------------------------------------------------------------------CTCTATTATA------------------------------TGTATAGC----TGT------------------------------------------------------
droEle1 scf7180000490380:71219-71413 + TA----TATTATTG-ATCAGCATCACTAGCAGAGTCGATC-TAGCCAAGT------------------CCGTCTA--------TCCG---------------TC----------------C--GTTTC-TACGCAAACTAGTCTCTCAG---------------------------------------------------------------------TT----TTAAAGCTATCTGCATGAAACTTTC-----------------------------------CCAAA--------------------------------------------------------------------------CTTT-ACAGTCAAT--------TTGACACTGGT----------------------------------------------------ATC-----------------------------------------------------------------------------------------------------------------AAATAAAAACAC-AAA--------A-ATTATAAACACAAAAGTAA-------------AAGAAACGCTTAT-------------------AAATG-----------------------------------------------------------
droRho1 scf7180000769636:2199-2371 - TA----TATTCATG-ATCAGGATCACCTCCTGAGTTGATA-TAAGCATGT------------------CCGTCTG--------TCCGTCT-----------GTC----------------T--GTTTC-TACGAAAACTAGTCTCTCAG---------------------------------------------------------------------TT----TTAAAGGTATCGAATTGGGACTTTC-----------------------------------TATGG--------------------------------------------------------------------------GTTT-------------------------------------TA-----------TATTTGGCCAATCAA-TC-------------------CGACCTACCAAATTTCATAGAGATCGGCCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000299492:5397-5621 - TA----TATTCTTG-ATAAGCATAACTAGACGAGTCGATC-TAGCCATGT------------------CTGTCTG--------TCCG---------------TC----------------C--GTTTC-TACGCAAACTGGTCTCTAAG---------------------------------------------------------------------TT----TAAACGCTAGTGCGGTAAAACTTTC-----------------------------------TCAAA--------------------------------------------------------------------------AGTCTTCTTTCT-A-TTGCAAG-------TAGTGTATAAGTCGGAGCCGGACGG---------------ATCA---------------------AACACTAACA------------------------------------------------------------------------------------------------------------CTAGG--------A-ACTATCGGCGAAAAAATAAAAAAATTATA------------------------------TATCTTGGTGTTTTTC-----------------------------------------------------
droTak1 scf7180000414523:10950-11152 - TA----TATTCTTG-ATCAGCATCACTAGACGAGTCGATC-TAGCCATGT------------------CCGTCTG--------T-----------------------------------------TTC-TACGCAAACTAGTCTCTCAG---------------------------------------------------------------------TT----TTTAAGCTATCGGCTTGAAACTTTC-----------------------------------GCAAA--------------------------------------------------------------------------AGTCTTCTTTCT-A-TTGCAGG-------TAGTATATAAGTCGGAACCGA------------------------------------------------CCGAATCAGA-CAAAATCGGA---------------------------------------------------------------------------------------------------------------------AAAAAAACAAAAAAATTCTAGCT-----------AT-------------------ATATATTTTT------------------------------------------------------
droEug1 scf7180000409551:270561-270691 + TC----TATTCTTA-ATCAGGATCAATAGCGAAGTCGATT-GAGCCATAT------------------CCGCATG--------TACAAT---------------------------CTTGAGA--TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGTGCATCTT-ATGG-------TGGTATCAACATCCGGCCAAA------------------------------------------------CCGGATCTTACGCACACC---------------------------------------------------------------------------------------------------------------------------AAGCT----------------------------------------------------------CAAAA------------------------------------------------
dm3 chr2R:1208384-1208573 + TA----TATTCTTG-ATCAGGATCAATTATTCAGTCGTTATTAGTCGTGT------------------AAATTTC--------T-----------------ATC----------------G--ATTTG-CCAAATAACTTTTTACTCCA---------------------------------------------------------------------CC----CTAAAGCCACCAAACCGG------------------------------------------------------------CCACG-CTCACAC------------T----------------TTTG---------------------------------AAAA-------AT------------------------------------------------------GT----------------------------------------------------------------------TTACATATTTTCTCATTTG--TTTACCCAA----TATCGATATCCCAGAA--------------------------------AAATTAT-GAAATTTCG------------------------------C------------AT------------------------------------------------------
droSim2 3l:6051147-6051346 + TATGTATATTCTTG-ATCAGGATCGACAGTCGAGTCGATC-TGACCATTT------------------TCGTCTG--------TCCGTATGAAC----------------------GTCGAGA--TC--T-CAGGAACTAGCGTG---GAATTACGAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCATACTCTTTAA--TTTAAATAACTTTCCTAGAATTCTTA-----------------------------------------------------------------------------------------------ATTT-ATTAAAATCATT---------------------------------------------------------------------------------------------------------------------GAAAAGATAGAGAGCTTAGG------------------------------CATTTACATATGTATCCACAA------------------------------------------------
droSec2 scaffold_8:3394925-3395152 - TA----TATTCTTGGATTAGGATCAAAAGCCGAGTCCGTC-TGTTC------------------------GTCTG--------TCCGTAT-------------------------------------G-AA-GCTTGCCACGCGCCCAC---------------------------------------------------------------------TT----TTAAACC-ATTT-TTTGAAATTTTT-----------------------------------CATAA--TTGTATTATTC------------TTGTGAA------TTTCTGT----------------CGACATG-----------CA--------------------------------------------------------------------------TT-----------------A-------------------------------ATTTTTTT----------------------------CTCATTTT--AATCCTCAACATCTATCGATATCCCAGAAAAATT--------ATGAAATATCGCA---TTCACACTAGCT-----------GAGTAACGGG-----------------------------TAT------------------------------------------------------
droYak3 v2_chrUn_001:324452-324602 + TA----TATTATAC-ATATT-------------------------------------------------ATATTA--------TATATATGGGGGTTGCTTA-CCT--------------T--GTTTT-TAAAAAATATCGAA----GT------------TTTACTTCTTGCTTCACAGCTTTTATTCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-------TAGCATAAATAT-------------------------------------------------------------------------------------GTTTAAAAACT----------------------------------------------------------AATGTTTCCCGA--------------------------------AAAACAT-AAAA---------------------------------------------------TTCAA------------------------------------------------
droEre2 scaffold_4770:14977885-14978049 + TA----TATTCTTG-AGCAGGATCAATAGCCGAGACGAAC-TGGTCATT-------------------------G--------T-------------------CCG--------------C--ATGTC-TAAATTTTTTTG----TAAT---------------------------------------------------------------------TT----T-----------------------------------------------------------AC----------------------------TAATGTAATTTTACTAAAACTGAAG---TT----------------------------------------------------CTAAAGTCCATAACTCA-----------------------------------------------ACTAATCCTAATCGAAAT--------------------------------------------------------------------------------------T------------------AGAAG------------------------TGGCATACCT-----------GC-------------------AAATGTTTCT------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TA----TTTTCTTG-ATCAGCATCAACAGCCGATGCTGAT--TGCCACGC------------------CCCT-----------------------------TTC----------------C--GCTTT-TAAAAAAACTCGAATTTCTC-------------------------------------------------------------------CCTTAATCA-------ACC-------------------------------------------------------------------------------TTGTGCAATCAAATTTGGTACACTT---------------------------------AAA-T--------TTGATACTAAT----------------------------------------------------ATCCAGCAAAATACCAAATTTGATCAATATCGGA---------------------------------------------------------------------------------------------------------------------CTAAAAATAGCCAAGTTATG------------------------------CATATAAATGTTTTTCCAGAAGGCCGAAGTTGGCCGTTGGCTGGTGGAGGCGCTAGTGTGCTCGCATGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGAAGGCCGAAGTTGGCCGT................................2413.00300030
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTTTCCAGAAGGCCGAAGTTGG....................................2513.00301020
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATGTTTTTCCAGAAGGCCGAAGT.......................................2612.00200020
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGGAGGCGCTAGTGTGCTCGC....2421.50300030
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCCAGAAGGCCGAAGTTG.....................................2111.00101000
..........................................................................................................................................................................................................................TTAATCA-------ACC-------------------------------------------------------------------------------TTGTGCAATCA.........................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.........TCTTG-ATCAGCATCAACAGCCGATGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2621.00202000
.................................................................................................................................TAAAAAAACTCGAATTTCTC-------------------------------------------------------------------CCTTAATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2821.00200020
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATATCGGA---------------------------------------------------------------------------------------------------------------------CTAAAAATAGCCAAGTT......................................................................................................2811.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG------------------------------CATATAAATGTTTTTCCAGAAGGCCG...........................................2811.00100010
...........................................................................................................................................................................................................................TAATCA-------ACC-------------------------------------------------------------------------------TTGTGCAATCAAATTTGG..................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGAAGGCCGAAGTTGGCCGT................................2311.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAGAAGGCCGAAGTTGGCCG.................................2311.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATG------------------------------CATATAAATGTTTTTCCAGAAGG..............................................2711.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAATGTTTTTCCAGAAGGCCGAAG........................................2611.00101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTTTCCAGAAGGCCGAAGTT......................................2411.00100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAATTTGATCAATATCGGA---------------------------------------------------------------------------------------------------------------------CTAAAAA................................................................................................................2820.50101000
........TTCTTG-ATCAGCATCAACAGCCGATGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50101000
.........TCTTG-ATCAGCATCAACAGCCGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.50101000
...........TTG-ATCAGCATCAACAGCCGATGCTGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50101000
...............ATCAGCATCAACAGCCGATGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50100010
.................................................................................................................................TAAAAAAACTCGAATTTCTC-------------------------------------------------------------------CCTTAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCGTTGGCTGGTGGAGGCGCTAGT............2740.50200110
..............................CGATGCTGAT--TGCCACGC------------------CCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50101000
........TTCTTG-ATCAGCATCAACAGCCGATG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.50100010
..................AGCATCAACAGCCGATGCTGAT--TGCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.50101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGGAGGCGCTAGTGTGCTCGCAT..2620.50100010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTGGTGGAGGCGCTAGTGTGC........2530.33100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTGGTGGAGGCGCTAGTGTGCTCT.....2730.33101000
.....................................................................................................TTC----------------C--GCTTT-TAAAAAAACTCGAATTTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2730.33101000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTGGTGGAGGCGCTAGTGTG.........2330.33100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTGGTGGAGGCGCTAGTGTGC........2430.33100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGGAGGCGCTAGTGTGCTC......2230.33100010
.....................................................................................................TTC----------------C--GCTTT-TAAAAAAACTCGAATT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2530.33101000
......................................................................................................TC----------------C--GCTTT-TAAAAAAACTCGAATTTCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2730.33101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGTTGGCCGTTGGCTGGTG.......................21160.31505000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCGTTGGCTGGTGGAGGC..................21120.25300030
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCGTTGGCTGGTGGAGGCGCTAG.............26100.20201010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCGTTGGCTGGTGGAGGCGCTA..............25110.18200020
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCGTTGGCTGGTGGAGGCGC................23120.17202000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGTTGGCCGTTGGCTGGTGG......................23120.17201010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCGTTGGCTGGTGGAGGCG.................22120.17200020
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCGTTGGCTGGTGGAGG...................20130.15200020
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCGTTGGCTGGTGGAT....................19200.10200020
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCCGAAGTTGGCCGTTGGCTG..........................24100.10101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGCCGTTGGCTGGTGGAGG...................22110.09100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCCGTTGGCTGGTGGAGGC..................22110.09100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCGTTGGCTGGTGGAGGCGCT...............24120.08101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGGCTGGTGGAGGCGCTA..............21140.07101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTGGCTGGTGGAGGCGCT...............21150.07101000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGTTGGCCGTTGGCTGG.........................20150.07100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGTTGGCCGTTGGCTG..........................19150.07101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAAGTTGGCCGTTGGCTGG.........................21150.07100001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGTTGGCTGGTGGAG....................18160.06101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCGTTGGCTGGTGGAGGCAA................23180.06101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTGGCCGTTGGCTGGTGG......................21180.06101000
..........CTTG-ATCAGCATCAACAGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
droVir3
TA----TATTGTTG-ATCAACATCAATAGCCGAGTCGGTC-TAGCCATGT------------------CAGTCTG--------TCTGGA--------------------------------------------------------ACAA---------------------------------------------------------------------TT----TTAATGCAAT-----TG---------TAATTTGGGAATACACGAATTATCTGCAGCAAGA--------------------------TAAAATCTAC----------------------------------------------------------------------------------------------------------------------------------------------------------AGATCGGT---------------------------------------------------------------------------------------------------------------------TAAGAAACACCAAGGTTATTGAA-----------GAAAACGTGTTTTGGCTAGTCAC------------------GAATTTGGCTG-------------------------GGCTAGCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----------GAAAACGTGTTTTGGCTAGTCAC------------------............................................2511.001001000000000000000000000000000000000000000000000000000000000000
..............................................ATGT------------------CAGTCTG--------TCTGGA--------------------------------------------------------ACAA---------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
..........GTTG-ATCAACATCAATAGCCGAGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
....................CATCAATAGCCGAGTCGGTC-TAGCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.201001000000000000000000000000000000000000000000000000000000000000
.........................................TAGCCATGT------------------CAGTCTG--------T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.051000000000000000000000000000000000000000000100000000000000000000
.................CAACATCAATAGCCGAGTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000100000000000000000000000000000000000000000
droMoj3
TA----TATTCTTG-ATCAGGGCGACGAGCTGAGTTGATC-GCGTCGATT-----------------------T-----------------------------CCGAAGATAAAAGAGCTAGA--GA----------CCTGAATTTTTT--------------------------------------TTTTTAA------------------------AT----T-------ACCATATAA--------A---------------------------------------C--AGCGCGGATGTCGAG---------------------------------------------------------------------T--------TTGCTTTT--------------------------------------------------------------------------------AAAAT--------------------------------------TCGATAAATCATACCGTTATGTT--TTTATC-----------------GAATAA---------------------------------AAACATTCAAGT------------------------------------------------T------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........TTG-ATCAGGGCGACGAGCTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.60121200000
............................................................................................................................................................................................................................................TATAA--------A---------------------------------------C--AGCGCGGATGTCG.............................................................................................................................................................................................................................................................................................................................................................................................................................2060.171100000
................TCAGGGCGACGAGCTGAGTTGATC-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2460.171100000
.............................................................................................................................................................................................................................................ATAA--------A---------------------------------------C--AGCGCGGATGTCGAG---------------------------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................2160.171000001
............................................................................................................................................................................................................................................TATAA--------A---------------------------------------C--AGCGCGGATGTCGA............................................................................................................................................................................................................................................................................................................................................................................................................................2160.171000001
.............................................................................................................................................................................................................................................ATAA--------A---------------------------------------C--AGCGCGGATGTCGAG---------------------------------------------------------------------T--------.............................................................................................................................................................................................................................................................................................................................................2260.171001000
............................................................................................................................................................................................................................................TATAA--------A---------------------------------------C--AGCGCGGATGTCGAG---------------------------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................2260.171000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAT--------------------------------------TCGATAAATCATACCG..........................................................................................................................................................................................2170.141100000
.............G-ATCAGGGCGACGAGCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.102200000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATC-----------------GAATAA---------------------------------AAACATTCAAG........................................................................................................21200.051100000
........................................................................................................................................................................................................................................................................................................CGGATGTCGAG---------------------------------------------------------------------T--------TTGCTTTT--------------------------------------------------------------------------------A....................................................................................................................................................................................................................................................21200.051000001
droGri2
TA----TATTCTTG-TTCAGGATCAATAGCGGAGGCGAAT-TAGCCATGT------------------TCGTTTG--------TCGGAA----C-TCAGAGATC----------------TG-ATTTCCGATAGCAATAAGTGCTACAC---------------------------------------------------------------------TT----TTAAAGGCAGACACTTC---------TAATTAATAAA-----------------------------------------------------------------------------------------TAACATG-----------CAT--------------------------------------------------------------------TTGCATATTATTGATCAACTGCCTAAATTTCATCAAGATCGGA---------------------------------------------------------------------------------------------------------------------TAAGAAAGAGCCAAGTTATACTA-----------GA-------------------AAATATA-TT------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
TA----TGTTCCTG-ATCAGCATCGATAGCCGAGTCGATT-TAGCCAAGT------------------CTGTCTGTCCATCCACCCATCC-----------GTC----------------T--GATTC-CGC--------------------------------------------------------C-----CCCAAAAAAGCCCGAAAATCTGTGGCAAA---------------------------------------------------------------------------------------CACAAGATACAAGAAAACTAGAAACGCAG---AA------------------------------------------------------C---------------------------------CATAGACAAGGACTATATCTAACAGATTGCCGAATTTGAATCAGAGCGGGCTA----------------------------------------------------TTATTATAGC-----------------CAGAAG----------------------------------------------AAG------------------------------CAAA--TC----AAT------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............TG-ATCAGCATCGATAGCCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2180.2520200000000
............TG-ATCAGCATCGATAGCCGAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2280.2520200000000
............TG-ATCAGCATCGATAGCCGAGTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2470.1410100000000
.................CAGCATCGATAGCCGAGTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2080.1310100000000
..................AGCATCGATAGCCGAGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18110.0910100000000
............TG-ATCAGCATCGATAGCCGAGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23190.0510100000000
droPer2
TA----TATTCTTG-ATCAGCATCGATAGCCGAGTCGATT-TAGCCAAGT------------------CTGTCTG--------TCCATCC-----------GTC----------------C--GATTG-GACGCA-------------CTTTTACAAGGGTTTGACCCCTTGC-------------GCC-----CCCAACAAAGCACGAAAATCTTTGGCAAA---------------------------------------------------------------------------------------CACAAGATACAAGAAAACTAGAAACGCAG---AA------------------------------------------------------C---------------------------------CATAGACAAGGACTATATCTAACATATTGCCGAATTTGAATCAGATCGGGCTA----------------------------------------------------TTATTATAGC-----------------CTGAAG----------------------------------------------AAG------------------------------CAAA--TC----AAT------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............G-ATCAGCATCGATAGCCGAGTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23140.213300000
...........TTG-ATCAGCATCGATAGCCGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22160.193000003
...........TTG-ATCAGCATCGATAGCCGAGTCGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26110.091000001
................TCAGCATCGATAGCCGAGTCGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23140.071010000
..........CTTG-ATCAGCATCGATAGCCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.061010000
....................................................................................................................................................................................................CAACAAAGCACGAAAATCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
droAna3
TA----TATTCTTG-ATCAGGATCACCTCCTGAGTCGATA-TGACCGTCT----------------GTCGGTCTG--------TCCGTCT-----------GTC----------------T--GTTTC-TACGCAAACTAGTTTCTCAG---------------------------------------------------------------------TTAATTG-------ATTGATCGG--------A---------------------------------------AATGCCATAACTTTGGTGT-------------------T------------------------------------------------T-TTGAAGT-------TAGAACCCATGTTA-----------TATTTGACCAAAATA-TC-------------------TTATGTACAAAATTTCATAAGGATCGGCCGAATATATCCTATAG-----------------------------------------------------------------------------------------C------------------------TGCCATA------------------------------TATGTAACTGATTGATCGGAA------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........TTCTTG-ATCAGGATCACCTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.408800000
....................................................................................CCGTCT-----------GTC----------------T--GTTTC-TACGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.357700000
.............................................................................................................................................................................................................................ATTG-------ATTGATCGG--------A---------------------------------------AATGCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153000003
......................TCACCTCCTGAGTCGATA-TGACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23180.061000001
...................GGATCACCTCCTGAGTCGATA-TGACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26180.061000001
.................CAGGATCACCTCCTGAGTCGATA-TGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27190.051010000
..............................................................................................................................................................................................................................TTG-------ATTGATCGG--------A---------------------------------------AATGCCATAACTTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................28200.051100000
...........................................................................................................................................................................................................................TAATTG-------ATTGATCGG--------A---------------------------------------AATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTAACTGATTGATCGGAA------------------------------------------------20200.051000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCATAAGGATCGGCCGA.........................................................................................................................................................................................................................................20200.051010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATATATCCTATAG-----------------------------------------------------------------------------------------C------------------------TGC.......................................................................................................20200.051000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAATTTCATAAGGATCGGCCGAA........................................................................................................................................................................................................................................25200.051100000
.............................................................................................................................................................................................................................................TCGG--------A---------------------------------------AATGCCATAACTTTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
.............................................................................................................................................................................................................................ATTG-------ATTGATCGG--------A---------------------------------------AATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCATAAGGATCGGCCGAATATATCC.................................................................................................................................................................................................................................26200.051100000
droBip1
TC----TATTCTTG-ATTAGGATCACCTTCTGAGTTGATA-AAGGCATGT------------------CCGTCTG--------TCTG---------------TC----------------T--GTTTC-TACGCAAATTAGTCTCTCAG---------------------------------------------------------------------TT----T-------ATTTAAGAA--------A---------------------------------------AATTTTAAAAATTTAT-----TTTAAGATACGTATATACTTTAGAATTAA---GA------------------------------------------------------A---------------------------------CTTAAA----------------------------------CAAGATA--A---------------------------------------------------------------------------------------------TTAAAACTAATTA---------AAATAAAATT----------------------------------------------------------ATAAA------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TA----TATTCTTA-ATCAGCATCAAAAACCGATTCGATC-TAGACATGTTTGGGGGAAAAAA--------ATTT--------TTA---------------ATT----------------T--TTTTT-CCCGATATTTTATTG---------------------------------------------TTAAA------------------------AT----T-------GTCATAAAA--------A---------------------------------------AATTATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTTTTGATTTTTTAAAATTCTAAATTTAGTAAGCAGATTTG--TTAAAC-----------------T------------------AGAAA------------------------AAACTAGCA-CAGAAACGTT----------TTCCG--------AATG---------------GAATTTGATGC-------------------------TTTTTCGGSizeHit CountTotal NormTotal
No Reads
droFic1
TA----TATTCTTG-ATCAGCATCACGATCTGAATCGGAA-TACG----TCTGTAGGCTGCCGCCTGTCCGTCTG--------TCCTCCT-----------GTC----------------T--GTTTC-TATATAAACTAATCTCTCAG---------------------------------------------------------------------TT----TTAAAGCTATCTTGATGAAACTTTA-----------------------------------CCAAAAGTTGTGTAGTTGTGGTGT-------------------TTTC---------------------------------------------------------TAACTGCT----------------------------------------------------ATTGAATTTTGGATTAAATTTTATCAAAATCGGATAA----------------------------------------------------------------------------------------------------------------------------CTCTATTATA------------------------------TGTATAGC----TGT------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TA----TATTATTG-ATCAGCATCACTAGCAGAGTCGATC-TAGCCAAGT------------------CCGTCTA--------TCCG---------------TC----------------C--GTTTC-TACGCAAACTAGTCTCTCAG---------------------------------------------------------------------TT----TTAAAGCTATCTGCATGAAACTTTC-----------------------------------CCAAA--------------------------------------------------------------------------CTTT-ACAGTCAAT--------TTGACACTGGT----------------------------------------------------ATC-----------------------------------------------------------------------------------------------------------------AAATAAAAACAC-AAA--------A-ATTATAAACACAAAAGTAA-------------AAGAAACGCTTAT-------------------AAATG-----------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TA----TATTCATG-ATCAGGATCACCTCCTGAGTTGATA-TAAGCATGT------------------CCGTCTG--------TCCGTCT-----------GTC----------------T--GTTTC-TACGAAAACTAGTCTCTCAG---------------------------------------------------------------------TT----TTAAAGGTATCGAATTGGGACTTTC-----------------------------------TATGG--------------------------------------------------------------------------GTTT-------------------------------------TA-----------TATTTGGCCAATCAA-TC-------------------CGACCTACCAAATTTCATAGAGATCGGCCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TA----TATTCTTG-ATAAGCATAACTAGACGAGTCGATC-TAGCCATGT------------------CTGTCTG--------TCCG---------------TC----------------C--GTTTC-TACGCAAACTGGTCTCTAAG---------------------------------------------------------------------TT----TAAACGCTAGTGCGGTAAAACTTTC-----------------------------------TCAAA--------------------------------------------------------------------------AGTCTTCTTTCT-A-TTGCAAG-------TAGTGTATAAGTCGGAGCCGGACGG---------------ATCA---------------------AACACTAACA------------------------------------------------------------------------------------------------------------CTAGG--------A-ACTATCGGCGAAAAAATAAAAAAATTATA------------------------------TATCTTGGTGTTTTTC-----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TA----TATTCTTG-ATCAGCATCACTAGACGAGTCGATC-TAGCCATGT------------------CCGTCTG--------T-----------------------------------------TTC-TACGCAAACTAGTCTCTCAG---------------------------------------------------------------------TT----TTTAAGCTATCGGCTTGAAACTTTC-----------------------------------GCAAA--------------------------------------------------------------------------AGTCTTCTTTCT-A-TTGCAGG-------TAGTATATAAGTCGGAACCGA------------------------------------------------CCGAATCAGA-CAAAATCGGA---------------------------------------------------------------------------------------------------------------------AAAAAAACAAAAAAATTCTAGCT-----------AT-------------------ATATATTTTT------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TC----TATTCTTA-ATCAGGATCAATAGCGAAGTCGATT-GAGCCATAT------------------CCGCATG--------TACAAT---------------------------CTTGAGA--TG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAGTGCATCTT-ATGG-------TGGTATCAACATCCGGCCAAA------------------------------------------------CCGGATCTTACGCACACC---------------------------------------------------------------------------------------------------------------------------AAGCT----------------------------------------------------------CAAAA------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TA----TATTCTTG-ATCAGGATCAATTATTCAGTCGTTATTAGTCGTGT------------------AAATTTC--------T-----------------ATC----------------G--ATTTG-CCAAATAACTTTTTACTCCA---------------------------------------------------------------------CC----CTAAAGCCACCAAACCGG------------------------------------------------------------CCACG-CTCACAC------------T----------------TTTG---------------------------------AAAA-------AT------------------------------------------------------GT----------------------------------------------------------------------TTACATATTTTCTCATTTG--TTTACCCAA----TATCGATATCCCAGAA--------------------------------AAATTAT-GAAATTTCG------------------------------C------------AT------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCAGAA--------------------------------AAATTAT-GAAATTTCG------------------------------.....................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TTATTAGTCGTGT------------------AAATTTC--------T-----------------ATC----------------G--T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TATTAGTCGTGT------------------AAATTTC--------T-----------------AA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
TA----TATTCTTG-ATCAGGATCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TTATTAGTCGTGT------------------AAATTT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...............................................TGT------------------AAATTTC--------T-----------------ATC----------------G--ATTTG-CCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCCAGAA--------------------------------AAATTAT-GAAATTTCG------------------------------T------------........................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATATCCCAGAA--------------------------------AAATTAT-GAAA........................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................AGTCGTGT------------------AAATTTC--------T-----------------ATC----------------G--C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................TTAGTCGTGT------------------AAATTTC--------T-----------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TA----TATTCTTG-ATCAGGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................GTGT------------------AAATTTC--------T-----------------ATC----------------G--ATTTG-C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCAGAA--------------------------------AAATTAT-GAAATTT.....................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGAA--------------------------------AAATTAT-GAAAT.......................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATATCCCAGAA--------------------------------AAATTAT-GAAATTT.....................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................TCGTGT------------------AAATTTC--------T-----------------ATC----------------G--ATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGATATCCCAGAA--------------------------------AAATTAT-GAAAT.......................................................................................................28200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................AAATTTC--------T-----------------ATC----------------G--ATTTG-CCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCAGAA--------------------------------AAATTAT-GAAATTTCG------------------------------C------------........................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................AAATTTC--------T-----------------ATC----------------G--ATTTG-CCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................AGTCGTGT------------------AAATTTC--------T-----------------ATC----------------G--ATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGATATCCCAGAA--------------------------------AAATTAT-GA..........................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................TTATTAGTCGTGT------------------AAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TATTAGTCGTGT------------------AAATTTC--------T-----------------ATC----------------G--T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................ATTAGTCGTGT------------------AAATTTC--------T-----------------ATC----------------G--C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.....................................TTATTAGTCGTGT------------------AAATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................ATTTC--------T-----------------ATC----------------G--ATTTG-CCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGAA--------------------------------AAATTAT-GAAATTTCG------------------------------C------------........................................................24200.0510000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TATGTATATTCTTG-ATCAGGATCGACAGTCGAGTCGATC-TGACCATTT------------------TCGTCTG--------TCCGTATGAAC----------------------GTCGAGA--TC--T-CAGGAACTAGCGTG---GAATTACGAGG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTCATACTCTTTAA--TTTAAATAACTTTCCTAGAATTCTTA-----------------------------------------------------------------------------------------------ATTT-ATTAAAATCATT---------------------------------------------------------------------------------------------------------------------GAAAAGATAGAGAGCTTAGG------------------------------CATTTACATATGTATCCACAA------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................TG--------TCCGTATGAAC----------------------GTCGAGA--TC--T-CAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28201.5030000000026040000000
..........................................................................G--------TCCGTATGAAC----------------------GTCGAGA--TC--T-CAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.551100000063020000000
.........................................................................TG--------TCCGTATGAAC----------------------GTCGAGA--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.45900000000009000000
........................................................................CTG--------TCCGTATGAAC----------------------GTCGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.40800000000008000000
.........................................................................TG--------TCCGTATGAAC----------------------GTCGAGA--TC--T-CAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.35700000000430000000
...................................................................................TCCGTATGAAC----------------------GTCGAGA--TC--T-CAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.30600000000060000000
.....................................................................................CGTATGAAC----------------------GTCGAGA--TC--T-CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.25500100000000004000
........................................................................................ATGAAC----------------------GTCGAGA--TC--T-CAGGAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.25500000050000000000
....................................................................................CCGTATGAAC----------------------GTCGAGA--TC--T-CAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.20400000000001030000
..........................................................................G--------TCCGTATGAAC----------------------GTCGAGA--TC--T-CAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.20400000000010030000
...................................................................................TCCGTATGAAC----------------------GTCGAGA--TC--T-CAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.20400000000400000000
.........................................................................................TGAAC----------------------GTCGAGA--TC--T-CAGGAACTAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2550.20100000001000000000
....................................................................TCGTCTG--------TCCGTATGAAC----------------------GTCGAGA--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2560.17100000001000000000
.........................................................................TG--------TCCGTATGAAC----------------------GT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.15300000000003000000
.......................................................................TCTG--------TCCGTATGAAC----------------------GTCGAGA--TC--.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.15300000000100020000
..........................................................................................GAAC----------------------GTCGAGA--TC--T-CAGGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.15320100000000000000
.........................................................................TG--------TCCGTATGAAC----------------------GTCGAGA--T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.15300000000010002000
.....................................................................CGTCTG--------TCCGTATGAAC----------------------GTCGAGA--TC--.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10200000000200000000
..........................................................................G--------TCCGTATGAAC----------------------GTCGAGA--TC--T-CAGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.10200200000000000000
........................................................................CTG--------TCCGTATGAAC----------------------GTCGAGA--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10200000020000000000
........................................................................CTG--------TCCGTATGAAC----------------------GTCGAGA--TC--T-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.10200000001010000000
.....................................................................CGTCTG--------TCCGTATGAAC----------------------GTCGAGA--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.10200000000020000000
.........................................................................................TGAAC----------------------GTCGAGA--TC--T-CAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200000000002000000
...................................................................................TCCGTATGAAC----------------------GTCGAGA--TC--T-CAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.10200000000000020000
..........................................................................G--------TCCGTATGAAC----------------------GTCGAGA--TC--.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10200100000001000000
...................................................................................TCCGTATGAAC----------------------GTCGAGA--TC--T-CAGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.10200000001000010000
...................................................................................TCCGTATGAAC----------------------GTCGAGA--TC--T-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10200000001100000000
........................................................................CTG--------TCCGTATGAAC----------------------G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.10200000020000000000
..............................CGAGTCGATC-TGACCAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17130.08100000000001000000
...GTATATTCTTG-ATCAGGATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20140.07100000001000000000
..............................CGAGTCGATC-TGACCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16150.07100000000001000000
.......ATTCTTG-ATCAGGATCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18170.06100000000001000000
.........................................................................................TGAAC----------------------GTCGAGA--TC--T-CAGGAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100100000000000000
...................................................................................TCCGTATGAAC----------------------GTCGAGA--TC--T-CAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100000000000001000
...................................................................................TCCGTATGAAC----------------------GTCGAGA--TC--T-CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100100000000000000
......................................................................................................................CGAGA--TC--T-CAGGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
.........................................................................TG--------TCCGTATGAAC----------------------GTCGAGA--TC--T-CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000010000000
...................................................................................TCCGTATGAAC----------------------GTCGAGA--TC--T-C..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100100000000000000
........................................................................CTG--------TCCGTATGAAC----------------------GTCGAGA--TC--.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000010000000000
.....................................................................CGTCTG--------TCCGTATGAAC----------------------GTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000000001000000
.........................................................................TG--------TCCGTATGAAC----------------------GTCGAGA--TC--.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000000010000000
......................................................................................GTATGAAC----------------------GTCGAGA--TC--T-CAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000000000000000
............................................................................................AC----------------------GTCGAGA--TC--T-CAGGAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05110000000000000000
.......................................................................TCTG--------TCCGTATGAAC----------------------GTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000001000000
.........................................................................TG--------TCCGTATGAAC----------------------GTCGAGA--TC--T-CAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100000001000000000
.........................................................................TG--------TCCGTATGAAC----------------------GTCGAGA--TC--T-CAGGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................30200.05100000001000000000
.........................................................................TG--------TCCGTATGAAC----------------------GTCGAGA--TC--T-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000000100000000
...................................................................................TCCGTATGAAC----------------------GTCGAGA--TC--T-CAGGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100000010000000000
.....................................................................................CGTATGAAC----------------------GTCGAGA--TC--T-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000001000000000
....................................................................................CCGTATGAAC----------------------GTCGAGA--TC--T-CAGGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100000000000010000
........................................................................................ATGAAC----------------------GTCGAGA--TC--T-CAGGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000010000000000
....................................................................................CCGTATGAAC----------------------GTCGAGA--TC--T-CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000000000000000
.....................................................................................CGTATGAAC----------------------GTCGAGA--TC--T-CAGGAACTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100000000010000000
....................................................................................CCGTATGAAC----------------------GTCGAGA--TC--T-CAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000010000000000
..........................................................................G--------TCCGTATGAAC----------------------GTCGAGA--TC--T-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100100000000000000
..........................................................................................GAAC----------------------GTCGAGA--TC--T-CAGGAACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100100000000000000
...........................................................................................AAC----------------------GTCGAGA--TC--T-CAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000000001000000
.......................................................................TCTG--------TCCGTATGAAC----------------------GT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000001000000000
.......................................................................TCTG--------TCCGTATGAAC----------------------GTCGAGA--.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100000000000010000
........................................................................................ATGAAC----------------------GTCGAGA--TC--T-CAGGAACTA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000010000000
droSec2
TA----TATTCTTGGATTAGGATCAAAAGCCGAGTCCGTC-TGTTC------------------------GTCTG--------TCCGTAT-------------------------------------G-AA-GCTTGCCACGCGCCCAC---------------------------------------------------------------------TT----TTAAACC-ATTT-TTTGAAATTTTT-----------------------------------CATAA--TTGTATTATTC------------TTGTGAA------TTTCTGT----------------CGACATG-----------CA--------------------------------------------------------------------------TT-----------------A-------------------------------ATTTTTTT----------------------------CTCATTTT--AATCCTCAACATCTATCGATATCCCAGAAAAATT--------ATGAAATATCGCA---TTCACACTAGCT-----------GAGTAACGGG-----------------------------TAT------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................TCAAAAGCCGAGTCCGTC-TGTTC------------------------GTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACACTAGCT-----------GAGTAACGG.......................................................................................21200.4086101
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACACTAGCT-----------GAGTAACGGG-----------------------------T........................................................23200.2040040
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACTAGCT-----------GAGTAACGG.......................................................................................19200.0510010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---TTCACACTAGCT-----------GAGTAACGGG-----------------------------T........................................................24200.0511000
droYak3
TA----TATTATAC-ATATT-------------------------------------------------ATATTA--------TATATATGGGGGTTGCTTA-CCT--------------T--GTTTT-TAAAAAATATCGAA----GT------------TTTACTTCTTGCTTCACAGCTTTTATTCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-------TAGCATAAATAT-------------------------------------------------------------------------------------GTTTAAAAACT----------------------------------------------------------AATGTTTCCCGA--------------------------------AAAACAT-AAAA---------------------------------------------------TTCAA------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTCCCGA--------------------------------AAAACAT-AAAA---------------------------------------------------TTCAA------------------------------------------------2611.00101000000000
..................................................................................................................................................................TTACTTCTTGCTTCACAGCTTTTATTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27190.11202000000000
........................................................................................................................................................................................TATTCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-------TAGCATAAATAT-------------------------------------------------------------------------------------GTT..................................................................................................................................................................................................................................27130.08100100000000
.............................................................................................................................................................................TTCACAGCTTTTATTCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-------TAGCA.................................................................................................................................................................................................................................................................................................................................28140.07101000000000
...............................................................................................................................................................................CACAGCTTTTATTCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-------TAG...................................................................................................................................................................................................................................................................................................................................24150.07101000000000
.......................................................................................................................................................................TCTTGCTTCACAGCTTTTATTCTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA...............................................................................................................................................................................................................................................................................................................................................27160.06101000000000
droEre2
TA----TATTCTTG-AGCAGGATCAATAGCCGAGACGAAC-TGGTCATT-------------------------G--------T-------------------CCG--------------C--ATGTC-TAAATTTTTTTG----TAAT---------------------------------------------------------------------TT----T-----------------------------------------------------------AC----------------------------TAATGTAATTTTACTAAAACTGAAG---TT----------------------------------------------------CTAAAGTCCATAACTCA-----------------------------------------------ACTAATCCTAATCGAAAT--------------------------------------------------------------------------------------T------------------AGAAG------------------------TGGCATACCT-----------GC-------------------AAATGTTTCT------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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Generated: 05/18/2015 at 01:59 AM