dwi_1570

Name	Class	Family	Strand
CR1-1_DWil	LINE	CR1	-

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TACCGTAGTGGAAATATGAGGATTAAAAGTTAATGTATGCTCCATAGGAACACCTAAGTCATTGATAATATCTAACCTAATTATTATTAAACCTTTTGTTATAACTGAAAACTCAACATCAAATACAAGAGGTTGTGAAAACAAGAACTTAAAAAATAAACACATCAACTATTTCGTTTTATTTTTATTTGTTTTTTTCAGACTGAATGTGGCTGTCAATTTACCTCAAAACTAGAGGGCATGTTCAAGGA ************************************************...........(((((((((...........)))))))))(((((((((......(((....))).........)))))))))..((((((...((((...(((((((((.((............)))))))))))....)))))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body
.........................................................................................................................................................................TATTTCGTTTTATTTTTTTTTGTTG.........................................................	25	2	12	0.08	1	1
...............................................................................................................................................................................................................TGTGGCCGTAAAGTTACCT.........................	19	3	17	0.06	1	1

ATGGCATCACCTTTATACTCCTAATTTTCAATTACATACGAGGTATCCTTGTGGATTCAGTAACTATTATAGATTGGATTAATAATAATTTGGAAAACAATATTGACTTTTGAGTTGTAGTTTATGTTCTCCAACACTTTTGTTCTTGAATTTTTTATTTGTGTAGTTGATAAAGCAAAATAAAAATAAACAAAAAAAGTCTGACTTACACCGACAGTTAAATGGAGTTTTGATCTCCCGTACAAGTTCCT ************************************************...........(((((((((...........)))))))))(((((((((......(((....))).........)))))))))..((((((...((((...(((((((((.((............)))))))))))....)))))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V118 embryo	M045 female body
.........................................GGTATCCTTGTGGATTCAGTAACTAT........................................................................................................................................................................................	26	0	3	0.33	1	1	0
.....................................ACGAGGTATCATTGTGGTA...................................................................................................................................................................................................	19	3	18	0.11	2	2	0
...............................................................................................................................................................................................................ACACCGGCATTTCAATGGA.........................	19	3	17	0.06	1	0	1
............................................................................................................................................................ATTTGTGTAGTCGCTCAAG............................................................................	19	3	20	0.05	1	0	1
.................................................TGTGGATTCAGTAACTATTATAG...................................................................................................................................................................................	23	0	20	0.05	1	1	0

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004577:1900784-1901034 +	dwi_1570	TACCGTAGTG-GAAATATGAGGATTAAAAGTTAATGTATGCTCCATAGGAACACCTAAGTCATTGATAATATCTAACCTAAT-TATT-ATT----------AAACCT------------TTTGTTATAACTGAAAACTCA-----------------------------------------------------------------ACATCAAATACA----------------------AG------AGGT------------TGTGAAAACAAGAACTTAAAAAATA--------------------AACACATCAACTATTT---------CGTTTTATTTTTATTTGTTTTTTTCAGACTGAATGTGGCTGTCAATTTACCTCAAAACTAGAGGGCATGTTCAAGGA
droVir3	scaffold_13352:13946-14102 +		AACAATGGTA-TCAATATGAAGATTGAATCAGAGTTTAGAATCAAAAATAACGCCTAGATCCTTAACTGTTAGTATACGTTG-CAAA-GGG----------ATATTATCGAT-TGT---------ATAACT--------G---------------------------ACAAGATAAGATGTAGTACGATTAATTGTCATAAACATACACTTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA
droMoj3	scaffold_6500:20623160-20623288 -		AAACTAAAGGTGAG---TGAC-AA-------GAATTTGTAGTCACACTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGCTTTCAC-------------------------TAACC---------TGCTTTCCC----TTCACCTGTTGCAGACTGAATGTGGCTGTCAATTTACATCAAAACTGGAGGGCATGTTTAAGGA
droGri2	scaffold_15126:5463610-5463679 -		TTTCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTCTGGTTATAGACTGAATGTGGCTGTCAATTTACATCAAAACTGGAGGGCATGTTCAAGGA
dp5	Unknown_singleton_1717:214-326 -		CAAAATAGCG-GATATATGAGATTTAAAACATAAGTTAGGTACGAAGATAATGCCTAAGTCATTAACTTTGTACAGTCGTTC-CAAG-GAA----------ATGTTCTTAAT-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAACTCAAAAT
droPer2	scaffold_26:789196-789343 +		TACTGTTGCA-GCTATATGGCTGTTAAAACACATCTTATGATCAAAAAGGACTCAGAGGTAAGAAAGACAGATTTTAACATCATTAGCATAAATTAGTGTAGAAGAG------------TATGTTATA---------------------------------------A-----------------------------------------CTTGAGGA----------------------AG------GTC------------ATTCACA--------------G-----------------------------------------------------------------------------------------------------------------ATAAAA--CAGAT
droAna3	scaffold_12943:110707-110917 +		AACCGTGGTA-GATATATGGTCGGTTAATTTAAGTTTCAAACCTAATAGGATGCCCAGATCGTTAACCTGAGCTAATCGTTC-TAAG--CG----------TTCCCATAGAG-AAAGTAC-----ATACAT--------A---------------------------GCCTGGTGAAGGCTAGATCGATAAAATTACATAAGTTTACATTTCGATCCATTAAGCTTCAGGTTATTTTCTAA------GCATAA----ATTTT---T----------------AAATTT-------------------------------------------------------------A------------------------------------------------------TCCAAA
droBip1	scf7180000395280:986-1245 -		AACCATTAAG-GAAATATGGTCGGCAAATTTAAGTTTAATGTCTAATAGGATGCCGAGATCATTGACCTGGGTTAATTTTTC-TAAG-GTA----------ATCCCGTTAAT-AGA---------ATAAGT--------A---------------------------GCTTGCAGAGGACAAGAACGATAAAAAGACATATGCTTGCATTTTGATCCATTAAGTATTAGATTATTAGCTAA------ACACCA----TTTTT---G----------------AAAGTT-------------------------------------------------------------ATCAAGGTCAGACTGAAGACTGCATTCTGCATACATAAGAACTAGAGAGTTCGTTAAAG--
droKik1	scf7180000300796:337611-337678 -		TCTTACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTTTGCAGACTGAATGCGGCTGTCAATTCACCTCGAAGCTAGAGGGCATGTTTAAGGA
droFic1	scf7180000453499:5210-5369 -		AACCATGTTC-GAAATACGAGCAGAGAATTTAAGTTTGGGGTCCAATTGGACGCCAAGATCGTCAACAAGCGTTATTCTTTC-CAAG-GTT----------CTCCCACTAAG-TGA---------ATAGGT--------G---------------------------ACA--------------------------------------TTTTGTGCT----------------------GA------ACGCTATGAA-----CGCTGAG------AACGAAAAG-----------------------------------------------------------------------------------------------------------------GCCCAA--CACAT
droEle1	scf7180000489586:6154-6268 +		AACAGTAGAC-TTTCAGTGACAGTCGAATTTTAATTTTGGGTCAAGAGGAACTCCTAAATCACTGACGGAATATATTCATAT-TATG----------------------AAG-AGA---------ATAGCT--------------------------------------------------------------------------------------------------------------------------------------TATA------------------------------------------------------------------------------------------------------------------------A-------ATGAAGGCGTAAC
droRho1	scf7180000777849:23359-23622 +		CACCATAGAA-GTAACATGGTCACAAAGCTTAAGTTTTGGGTCAAGAAGGACGCCAAGGTCATCAACATGCGTGATTCTAGA-CACA-GCC----------ATATTGTCGGT--------------------------------------------------------------------TCACCCTAATAAATGTCATTACTTTACACTTTGCGTTATTAAAATCCAAAAGATTTTCACA------ACACCA----TGTCT---G----------------AAAAGCATTTATG-------AAC---TTCACGTCATCTGCGTGCATGATTACACGCGACTTTTTTTTTTTTTTTTCGCGCGGAGTCCTACGGCCCACTTACC--------------------------
droBia1	scf7180000302473:7416-7608 -		AACAGTGGAC-ACTAGGTGGCAGACATATTTAAGTTTTGGGTCCAGAAGAACATCTAAATCGTTAACTCAATATATACGGTT-AAGT-GGC----------CCAATTTTAAT-AAA---------ATAACT-------------------------------------------------------GATAAAATATCATTACGTTGCGTCTAAGGCAGTTAAAATTTAAAAGGTTGTAT----------------------------------------------------------------------TCACATCATTTATTTATTTA----------------------------------------ATTTATTTAT-----------------------------TT
droTak1	scf7180000414779:8657-8898 -		GACAGTGGCC-ATTATGTGGCAATCAAATTTAAGTTTTGGGTCGAGAAGAACACCTAAATCGTTAAAAAATTC-----GGGC-AAGT-A-G----------TTTTCTTTTACCGT----ATTTTCAAAGTGGGAAATTCATCAAATATTGTTGAAAATTAAAAAAAAT---CT------------------------------TGAAGTCAAAGATG----------------------CTGATGTAGCT------------GTTCGAA--------------A-AAAAAATAAAACATAGGACGTAT-G--TATTACT------------------------------TG-TTTCCTAAAATAAATGTATTTGTTGATTT-----------------------------
droEug1	scf7180000409196:76298-76452 -		AACCATAGAG-GAAATATGGTCGGAAAACTTAAGTTTTGCATCCAGTAGGATGCCAAGATCTTCAACTGCATTAATTCTTTC-CAGA-GCT----------ACACCATGCAA-ATT---------ATAAGT--------G---------------------------GCAACT------------------------------TTAGGTCTTAGGCG----------------------AC------AGC------------GTTCGAA-------------------------------------------------------------------------------------------------------------------------------AACGAAAATACAAA
dm3	chr3RHet:2354854-2354984 +		GACAATAGTC-GAAATATGGTCAGAAAATTTTAGTTTAGGGTCCAGAAGAACACCAAGCTCATCAACCCGTGTTATTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTTTAAAAAAAAACTTGGCGAATAGATTGGCTGGAAACTGGAACTT-------ACAA
droSim2	2l:14906248-14906317 -		TTTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTATTATTGCAGACTGAATGCGGCTGTCAATTCACCTCGAAGTTAGAGGGAATGTTTAAAGA
droSec2	scaffold_2804:662-744 +		GACAATAGTC-GAAAGATGGTCAGAAAATTTTAGTTTTGCGTCCAGAAGAACACCAAGATCATCAACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGGCA--CCCAATTA
droYak3	2L:20063195-20063264 +		TCTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCAATTATTGCAGACTGAATGCGGCTGTCAATTCACCTCAAAGCTAGAGGGCATGTTTAAAGA
droEre2	scaffold_4929:7012544-7012613 -		TCTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTCTATTGCAGACTGAATGCGGCTGTCAATTCACCTCGAAGCTAGAGGGCATGTTTAAAGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

TACCGTAGTG-GAAATATGAGGATTAAAAGTTAATGTATGCTCCATAGGAACACCTAAGTCATTGATAATATCTAACCTAAT-TATT-ATT----------AAACCT------------TTTGTTATAACTGAAAACTCA-----------------------------------------------------------------ACATCAAATACA----------------------AG------AGGT------------TGTGAAAACAAGAACTTAAAAAATA--------------------AACACATCAACTATTT---------CGTTTTATTTTTATTTGTTTTTTTCAGACTGAATGTGGCTGTCAATTTACCTCAAAACTAGAGGGCATGTTCAAGGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

AACAATGGTA-TCAATATGAAGATTGAATCAGAGTTTAGAATCAAAAATAACGCCTAGATCCTTAACTGTTAGTATACGTTG-CAAA-GGG----------ATATTATCGAT-TGT---------ATAACT--------G---------------------------ACAAGATAAGATGTAGTACGATTAATTGTCATAAACATACACTTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................TATACGTTG-CAAA-GGG----------ATATTATCGAT-.........................................................................................................................................................................................................................................................................................................	27	7	180.57	1264	0	0	69	1	21	1	8	0	2	0	0	20	63	9	0	0	0	0	0	1	0	0	0	15	47	75	153	140	2	0	0	2	150	0	63	177	63	110	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	29
.................TGAAGATTGAATCAGAGTTTAGAAT................................................................................................................................................................................................................................................................................................................................................................................	25	1	57.00	57	0	0	1	0	6	0	3	0	4	0	0	0	0	2	0	0	0	0	0	0	0	0	0	3	8	3	6	0	1	0	0	0	5	0	5	4	0	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TATACGTTG-CAAA-GGG----------ATATTATCGA...........................................................................................................................................................................................................................................................................................................	26	7	55.71	390	0	0	53	0	8	0	0	0	1	1	1	3	12	2	0	0	0	0	0	0	0	0	0	7	13	18	57	45	4	0	0	0	43	0	18	39	16	37	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TATACGTTG-CAAA-GGG----------ATATTATC.............................................................................................................................................................................................................................................................................................................	24	8	14.13	113	0	0	5	0	7	0	3	0	0	0	0	4	9	6	0	0	0	0	0	0	1	0	0	5	9	6	7	8	2	0	0	1	5	0	3	2	6	5	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.........................................................................TATACGTTG-CAAA-GGG----------ATATTATCG............................................................................................................................................................................................................................................................................................................	25	7	13.71	96	0	0	7	0	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	3	3	4	9	1	0	1	1	1	9	0	2	19	6	11	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TATACGTTG-CAAA-GGG----------ATATTATCGAT-T........................................................................................................................................................................................................................................................................................................	28	6	13.67	82	0	0	11	0	4	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	3	7	6	6	0	0	0	1	12	0	5	3	3	12	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2
..................................................................................................................................T--------G---------------------------ACAAGATAAGATGTAGTACGATTAAT.........................................................................................................................................................................................................................	28	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	3	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TGAAGATTGAATCAGAGTTTAGAATCA..............................................................................................................................................................................................................................................................................................................................................................................	27	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TGAAGATTGAATCAGAGTTTAGAA.................................................................................................................................................................................................................................................................................................................................................................................	24	1	6.00	6	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................T--------G---------------------------ACAAGATAAGATGTAGTACGATTA...........................................................................................................................................................................................................................	26	8	5.25	42	0	0	1	0	1	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	2	2	7	4	0	1	0	0	4	0	3	11	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TTGAATCAGAGTTTAGAATCAAAAATA........................................................................................................................................................................................................................................................................................................................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................G---------------------------ACAAGATAAGATGTAGTACGATTAAT.........................................................................................................................................................................................................................	27	1	4.00	4	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................CAAGATAAGATGTAGTACGATTAATTG.......................................................................................................................................................................................................................	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................T--------G---------------------------ACAAGATAAGATGTAGTACGATT............................................................................................................................................................................................................................	25	8	3.75	30	0	0	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	1	1	1	9	2	2	0	0	0	4	1	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TTAGAATCAAAAATAACGCCTAGATC.............................................................................................................................................................................................................................................................................................................................................................	26	20	3.20	64	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	62	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................CAAGATAAGATGTAGTACGATTAAT.........................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................T--------G---------------------------ACAAGATAAGATGTAGTACGAT.............................................................................................................................................................................................................................	24	9	2.22	20	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	4	2	0	0	0	0	3	0	1	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TATACGTTG-CAAA-GGG----------ATATTATCGAT-C........................................................................................................................................................................................................................................................................................................	28	7	1.86	13	0	0	1	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	2	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................ATACGTTG-CAAA-GGG----------ATATTATCGAT-.........................................................................................................................................................................................................................................................................................................	26	7	1.71	12	0	0	6	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
.........................................................................TATACGTTG-CAAA-GGG----------ATAT.................................................................................................................................................................................................................................................................................................................	20	20	1.50	30	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................G---------------------------ACAAGATAAGATGTAGTACGATTA...........................................................................................................................................................................................................................	25	8	1.50	12	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	4	0	0	0	0	0	0	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TATACGTTG-CAAA-GGG----------ATATTA...............................................................................................................................................................................................................................................................................................................	22	8	1.38	11	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	1	0	0	0	0	0	0	2	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TATACGTTG-CAAA-GGG----------ATATTAT..............................................................................................................................................................................................................................................................................................................	23	8	1.25	10	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................TATACGTTG-CAAA-GGG----------ATATT................................................................................................................................................................................................................................................................................................................	21	20	1.25	25	0	0	9	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................ATACGTTG-CAAA-GGG----------ATATTATCGA...........................................................................................................................................................................................................................................................................................................	25	7	1.14	8	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TGAAGATTGAATCAGAGTTTAGAATCAA.............................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............AATATGAAGATTGAATCAGAGTTTAGA..................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TATGAAGATTGAATCAGAGTTTAGAAT................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TGAAGATTGAATCAGAGT.......................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................CAAGATAAGATGTAGTACGATTAATTGT......................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................T--------G---------------------------ACAAGATAAGATGTAGTACGATTAA..........................................................................................................................................................................................................................	27	8	1.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TGAAGATTGAATCAGAGTTTAGAATC...............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TGAATCAGAGTTTAGAATCAAAAATA........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TTGAATCAGAGTTTAGAATCAAAAAT.........................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................AAGATTGAATCAGAGTTTAGAATC...............................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................G---------------------------ACAAGATAAGATGTAGTACGATTAATT........................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TGAAGATTGAATCAGAGTT......................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................CAAGATAAGATGTAGTACGATTAATT........................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................TAACGCCTAGATCCTTAACTGTTAGT................................................................................................................................................................................................................................................................................................................................................	26	20	0.95	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	3	0	0	0	5	0	1	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................TACGTTG-CAAA-GGG----------ATATTATCGAT-.........................................................................................................................................................................................................................................................................................................	25	7	0.86	6	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TAGTATACGTTG-CAAA-GGG----------ATATTA...............................................................................................................................................................................................................................................................................................................	25	6	0.83	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TTG-CAAA-GGG----------ATATTATCGAT-.........................................................................................................................................................................................................................................................................................................	21	7	0.57	4	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TATACGTTG-CAAA-GGG----------ATATTATCGAA-.........................................................................................................................................................................................................................................................................................................	27	7	0.57	4	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CAGAGTTTAGAATCAAAAATAACGCC...................................................................................................................................................................................................................................................................................................................................................................	26	20	0.55	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................TG-CAAA-GGG----------ATATTATCGAT-TGT---------AT...........................................................................................................................................................................................................................................................................................	25	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................TGTTAGTATACGTTG-CAAA-GGG----------ATATTA...............................................................................................................................................................................................................................................................................................................	28	6	0.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................TG-CAAA-GGG----------ATATTATCGAT-TGT---------A............................................................................................................................................................................................................................................................................................	24	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TATACGTTG-CAAA-GGG----------AT...................................................................................................................................................................................................................................................................................................................	18	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TATACGTTG-CAAA-GGG----------ATA..................................................................................................................................................................................................................................................................................................................	19	20	0.45	9	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................GTTG-CAAA-GGG----------ATATTATCGAT-.........................................................................................................................................................................................................................................................................................................	22	7	0.43	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3
...................................................................................CAAA-GGG----------ATATTATCGAT-.........................................................................................................................................................................................................................................................................................................	18	7	0.43	3	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................GTATACGTTG-CAAA-GGG----------ATATTATCGAT-.........................................................................................................................................................................................................................................................................................................	28	7	0.43	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................G---------------------------ACAAGATAAGATGTAGTACGATT............................................................................................................................................................................................................................	24	8	0.38	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................G---------------------------ACAAGATAAGATGTAGTACGATTAA..........................................................................................................................................................................................................................	26	8	0.38	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TGT---------ATAACT--------G---------------------------ACAAGATAAGATGTAGTA.................................................................................................................................................................................................................................	28	8	0.38	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................TAACGCCTAGATCCTTAACTGTTAG.................................................................................................................................................................................................................................................................................................................................................	25	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................TTAGTATACGTTG-CAAA-GGG----------ATATT................................................................................................................................................................................................................................................................................................................	25	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TAGTATACGTTG-CAAA-GGG----------ATATT................................................................................................................................................................................................................................................................................................................	24	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TAGTATACGTTG-CAAA-GGG----------ATATTATC.............................................................................................................................................................................................................................................................................................................	27	6	0.33	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................AAA-GGG----------ATATTATCGAT-TGT---------ATAAC........................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TATACGTTG-CAAA-GGG----------ATATTATCT............................................................................................................................................................................................................................................................................................................	25	9	0.33	3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................ATACGTTG-CAAA-GGG----------ATATTATCGAT-T........................................................................................................................................................................................................................................................................................................	27	6	0.33	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................TG-CAAA-GGG----------ATATTATCGAT-TGT---------ATAAC........................................................................................................................................................................................................................................................................................	28	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................G---------------------------ACAAGATAAGATGTAGTAC................................................................................................................................................................................................................................	20	10	0.30	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TATACGTTG-CAAA-GGG----------ATATTATCGAT-TGT---------.............................................................................................................................................................................................................................................................................................	30	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................GTTG-CAAA-GGG----------ATATTATCGAT-TGT---------A............................................................................................................................................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................TTG-CAAA-GGG----------ATATTATCGAT-TGT---------A............................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................ACGTTG-CAAA-GGG----------ATATTATCGAT-TGT---------.............................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................T-TGT---------ATAACT--------G---------------------------ACAAGATAAGATGTAG...................................................................................................................................................................................................................................	27	8	0.25	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................ACGTTG-CAAA-GGG----------ATATTATCGAT-TGT---------A............................................................................................................................................................................................................................................................................................	28	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ATAACGCCTAGATCCTTAACTGTTAGT................................................................................................................................................................................................................................................................................................................................................	27	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................GTTAGTATACGTTG-CAAA-GGG----------ATATT................................................................................................................................................................................................................................................................................................................	26	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TGT---------ATAACT--------G---------------------------ACAAGATAAGATGT.....................................................................................................................................................................................................................................	24	12	0.25	3	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TGT---------ATAACT--------G---------------------------ACAAGATAAGATGTAGT..................................................................................................................................................................................................................................	27	8	0.25	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................ACAAGATAAGATGTAGTACGATTA...........................................................................................................................................................................................................................	24	8	0.25	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TTAGAATCAAAAATAACGCCTAGATCC............................................................................................................................................................................................................................................................................................................................................................	27	20	0.25	5	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TATACGTTG-CAAA-GGG----------ATATTAAA.............................................................................................................................................................................................................................................................................................................	24	9	0.22	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................T--------G---------------------------ACAAGATAAGATGTAGTACGA..............................................................................................................................................................................................................................	23	9	0.22	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................G---------------------------ACAAGATAAGATGTAGTACGAT.............................................................................................................................................................................................................................	23	9	0.22	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TAGTATACGTTG-CAAA-GGG----------ATAT.................................................................................................................................................................................................................................................................................................................	23	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................T--------G---------------------------ACAAGATAAGATGTAGTA.................................................................................................................................................................................................................................	20	10	0.20	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TGAAGATTGAATCAGAGTTTAGATA................................................................................................................................................................................................................................................................................................................................................................................	25	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................TCAAAAATAACGCCTAGATCCTTAACTGT....................................................................................................................................................................................................................................................................................................................................................	29	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................T--------G---------------------------ACAAGATAAGATGTAGTACGATTAT..........................................................................................................................................................................................................................	27	10	0.20	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................ACTGTTAGTATACGTTG-CAAA-GGG----------A....................................................................................................................................................................................................................................................................................................................	25	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................TATACGTTG-CAAA-GGG----------ATATTATAT............................................................................................................................................................................................................................................................................................................	25	10	0.20	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................GAT-TGT---------ATAACT--------G---------------------------ACAAGATAAGATG......................................................................................................................................................................................................................................	26	11	0.18	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................TTAGTATACGTTG-CAAA-GGG----------ATATTA...............................................................................................................................................................................................................................................................................................................	26	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................TTAGTATACGTTG-CAAA-GGG----------ATATTAT..............................................................................................................................................................................................................................................................................................................	27	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TAGTATACGTTG-CAAA-GGG----------ATATTAT..............................................................................................................................................................................................................................................................................................................	26	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TATACGTTG-CAAA-GGG----------ATATTATT.............................................................................................................................................................................................................................................................................................................	24	13	0.15	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................CCTAGATCCTTAACTGTTAGTATACGT..........................................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................TGTTAGTATACGTTG-CAAA-GGG----------ATAT.................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................ATACGTTG-CAAA-GGG----------ATATTATCG............................................................................................................................................................................................................................................................................................................	24	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TATACGTTG-CAAA-GGG----------ATATTATCGC...........................................................................................................................................................................................................................................................................................................	26	7	0.14	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................TACGTTG-CAAA-GGG----------ATATTATCGA...........................................................................................................................................................................................................................................................................................................	24	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................TG-CAAA-GGG----------ATATTATCGA...........................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................ACGTTG-CAAA-GGG----------ATATTATCGAT-.........................................................................................................................................................................................................................................................................................................	24	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.............................................................................CGTTG-CAAA-GGG----------ATATTATCGA...........................................................................................................................................................................................................................................................................................................	22	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................TAACT--------G---------------------------ACAAGATAAGATGTAGTACGA..............................................................................................................................................................................................................................	27	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................ACT--------G---------------------------ACAAGATAAGATGTAGTACGAT.............................................................................................................................................................................................................................	26	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................ATACGTTG-CAAA-GGG----------ATATTATC.............................................................................................................................................................................................................................................................................................................	23	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................TAACT--------G---------------------------ACAAGATAAGATGTAGTACGAT.............................................................................................................................................................................................................................	28	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................GTATACGTTG-CAAA-GGG----------ATATTATC.............................................................................................................................................................................................................................................................................................................	25	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................AGATAAGATGTAGTACGATTA...........................................................................................................................................................................................................................	21	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................TACGTTG-CAAA-GGG----------ATATTA...............................................................................................................................................................................................................................................................................................................	20	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................G---------------------------ACAAGATAAGATGTAGTACGATG............................................................................................................................................................................................................................	24	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TATACGTTG-CAAA-GGG----------ATATTATCGAC-.........................................................................................................................................................................................................................................................................................................	27	9	0.11	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................ACGTTG-CAAA-GGG----------ATATTAA..............................................................................................................................................................................................................................................................................................................	20	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................G---------------------------ACAAGATAAGATGTAGTACGA..............................................................................................................................................................................................................................	22	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................T--------G---------------------------ACAAGATAAGATGTAGTAC................................................................................................................................................................................................................................	21	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................T--------G---------------------------ACAAGATAAGATGTAGTACG...............................................................................................................................................................................................................................	22	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................AAAATAACGCCTAGATCCTTAACTGT....................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AGAGTTTAGAATCAAAAATAA.......................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TTAGAATCAAAAATAACGCCT..................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ATAACGCCTAGATCCTTAACTGTTAGTA...............................................................................................................................................................................................................................................................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GAGTTTAGAATCAAAAATA........................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................TCAAAAATAACGCCTAGATCCTTAACTG.....................................................................................................................................................................................................................................................................................................................................................	28	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................G---------------------------ACAAGATAAGATGTAGTA.................................................................................................................................................................................................................................	19	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................CCTAGATCCTTAACTGTTA..................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................GCCTAGATCCTTAACTGTTAG.................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................TTAGTATACGTTG-CAAA-GGG----------.....................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TAGAATCAAAAATAACGCCTAGATCCT...........................................................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................CGCCTAGATCCTTAACTGTTAGT................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................TAACTGTTAGTATACGTTG-CAAA-GGG----------A....................................................................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................T-TGT---------ATAACT--------G---------------------------ACAAGATAAGATGT.....................................................................................................................................................................................................................................	25	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TGT---------ATAACT--------G---------------------------ACAAGATAAGATGTA....................................................................................................................................................................................................................................	25	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TATACGTTG-CAAA-GGG----------ATATTATAA............................................................................................................................................................................................................................................................................................................	25	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................CGAT-TGT---------ATAACT--------G---------------------------ACAAGATAAGAT.......................................................................................................................................................................................................................................	26	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................G---------------------------ACAAGATAAGATGTAGT..................................................................................................................................................................................................................................	18	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TGT---------ATAACT--------G---------------------------ACAAGATAAGAT.......................................................................................................................................................................................................................................	22	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................ATAACT--------G---------------------------ACAAGATAAGATGT.....................................................................................................................................................................................................................................	21	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................T---------ATAACT--------G---------------------------ACAAGATAAGA........................................................................................................................................................................................................................................	19	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................TAACT--------G---------------------------ACAAGATAAGATG......................................................................................................................................................................................................................................	19	14	0.07	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TATACGTTG-CAAA-GGG----------ATATTATG.............................................................................................................................................................................................................................................................................................................	24	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TATACGTTG-CAAA-GGG----------ATATTAATA............................................................................................................................................................................................................................................................................................................	25	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................CTAGATCCTTAACTGTTAG.................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................TAACGCCTAGATCCTTAACTGTTAGTA...............................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................CTTAACTGTTAGTATACGTTG-CAAA-GGG----------.....................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CAGAGTTTAGAATCAAAAATA........................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................CTGTTAGTATACGTTG-CAAA-GGG----------ATA..................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................CAAAAATAACGCCTAGATCCTTAACTGT....................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................AAAAATAACGCCTAGATCCTTAACTGT....................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................CTAGATCCTTAACTGTTAGTATACGTT.........................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................CTAGATCCTTAACTGTTAGTATACGT..........................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................TCCTTAACTGTTAGTATACGTTG-CAAA-G.................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................TAACGCCTAGATCCTTAACTGTTAC.................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AGTTTAGAATCAAAAATAACGCCTA.................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................AAATAACGCCTAGATCCTTAACTGT....................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GAGTTTAGAATCAAAAAT.........................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AGAGTTTAGAATCAAAAA..........................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................TTAGTATACGTTG-CAAA-GGG----------ATA..................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CAGAGTTTAGAATCAAAAATAACGCCT..................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AAACTAAAGGTGAG---TGAC-AA-------GAATTTGTAGTCACACTGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGCTTTCAC-------------------------TAACC---------TGCTTTCCC----TTCACCTGTTGCAGACTGAATGTGGCTGTCAATTTACATCAAAACTGGAGGGCATGTTTAAGGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................CATCAAAACTGGAGGGCATG........	20	1	1.00	1	0	0	0	0	0	1

droGri2

TTTCTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTCTGGTTATAGACTGAATGTGGCTGTCAATTTACATCAAAACTGGAGGGCATGTTCAAGGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dp5

CAAAATAGCG-GATATATGAGATTTAAAACATAAGTTAGGTACGAAGATAATGCCTAAGTCATTAACTTTGTACAGTCGTTC-CAAG-GAA----------ATGTTCTTAAT-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAACTCAAAAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................................................TAACTTTGTACAGTCGTTC-CAAG-GA................................................................................................................................................................................................................................................................................................................................	25	5	0.60	3	0	0	0	0	0	0	0	3	0	0
...AATAGCG-GATATATGAGATTTAAAACA...........................................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........G-GATATATGAGATTTAAAACAT..........................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................TC-CAAG-GAA----------ATGTTCTTAAT-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAACT......	28	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...............................................................................TTC-CAAG-GAA----------ATGTTCTTAAT-T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAACT......	29	4	0.25	1	0	1	0	0	0	0	0	0	0	0
........................TAAAACATAAGTTAGGTACGAAGATAA.......................................................................................................................................................................................................................................................................................................................................................................	27	9	0.22	2	0	0	0	0	0	0	0	0	2	0
....................................................................TTGTACAGTCGTTC-CAAG-G.................................................................................................................................................................................................................................................................................................................................	19	5	0.20	1	0	0	0	0	0	0	0	0	1	0
....................................................................TTGTACAGTCGTTC-CAAG-GAA----------.....................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.........................................................................CAGTCGTTC-CAAG-GAA----------ATGTT................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
........................TAAAACATAAGTTAGGTACGAAGA..........................................................................................................................................................................................................................................................................................................................................................................	24	9	0.11	1	0	0	0	0	0	0	0	0	1	0

droPer2

TACTGTTGCA-GCTATATGGCTGTTAAAACACATCTTATGATCAAAAAGGACTCAGAGGTAAGAAAGACAGATTTTAACATCATTAGCATAAATTAGTGTAGAAGAG------------TATGTTATA---------------------------------------A-----------------------------------------CTTGAGGA----------------------AG------GTC------------ATTCACA--------------G-----------------------------------------------------------------------------------------------------------------ATAAAA--CAGAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................CATCTTATGATCAAAAAGGACTCAGAG................................................................................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0
................................ATCTTATGATCAAAAAGGACTCA...................................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0
.......................................................................................................................TATGTTATA---------------------------------------A-----------------------------------------CTTGAGGA----------------------AG------GTC------------AT..................................................................................................................................................	25	20	0.25	5	0	5	0	0	0	0
............................ACACATCTTATGATCAAAAAGGACTC....................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0
TACTGTTGCA-GCTATATGGC.....................................................................................................................................................................................................................................................................................................................................................................................................	20	15	0.07	1	0	1	0	0	0	0
........................................................................................................GAG------------TATGTTATA---------------------------------------A-----------------------------------------CTTGAGGA----------------------AG------GTC------------....................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
...........................AACACATCTTATGATCAAAAAGGACT.....................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
................................ATCTTATGATCAAAAAGGA.......................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0

droAna3

AACCGTGGTA-GATATATGGTCGGTTAATTTAAGTTTCAAACCTAATAGGATGCCCAGATCGTTAACCTGAGCTAATCGTTC-TAAG--CG----------TTCCCATAGAG-AAAGTAC-----ATACAT--------A---------------------------GCCTGGTGAAGGCTAGATCGATAAAATTACATAAGTTTACATTTCGATCCATTAAGCTTCAGGTTATTTTCTAA------GCATAA----ATTTT---T----------------AAATTT-------------------------------------------------------------A------------------------------------------------------TCCAAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................CAGATCGTTAACCTGAGCTAATCGTTC-.......................................................................................................................................................................................................................................................................................................................................	27	2	5.00	10	0	10	0	0	0	0
..................................................................CCTGAGCTAATCGTTC-TAAG--CG----------TTCC.................................................................................................................................................................................................................................................................................................................	26	2	3.50	7	1	5	1	0	0	0
............................................................................................................................................................................................................TACATTTCGATCCATTAAGCTTCAGGT...................................................................................................................................................................................	27	4	1.75	7	0	7	0	0	0	0
...............................................................TAACCTGAGCTAATCGTTC-TAAG--CG----------T....................................................................................................................................................................................................................................................................................................................	26	2	1.50	3	1	2	0	0	0	0
...........................................TAATAGGATGCCCAGATCGTTAACC......................................................................................................................................................................................................................................................................................................................................................	25	2	1.50	3	0	1	2	0	0	0
............................................................................................................................................................................................................TACATTTCGATCCATTAAGCTTCAGG....................................................................................................................................................................................	26	4	1.25	5	2	2	1	0	0	0
.........................................................................................................CATAGAG-AAAGTAC-----ATACAT--------A---------------------------GCCT...............................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.........................................CCTAATAGGATGCCCAGATCGTTAAC.......................................................................................................................................................................................................................................................................................................................................................	26	2	1.00	2	0	2	0	0	0	0
...............................................................TAACCTGAGCTAATCGTTC-TAAG--CG----------TT...................................................................................................................................................................................................................................................................................................................	27	2	1.00	2	0	2	0	0	0	0
..............................TAAGTTTCAAACCTAATAGGATGCCC..................................................................................................................................................................................................................................................................................................................................................................	26	2	1.00	2	0	2	0	0	0	0
....................................................................TGAGCTAATCGTTC-TAAG--CG----------TTCCC................................................................................................................................................................................................................................................................................................................	25	2	1.00	2	0	1	1	0	0	0
..............................TAAGTTTCAAACCTAATAGGATGCC...................................................................................................................................................................................................................................................................................................................................................................	25	2	1.00	2	0	2	0	0	0	0
.........................................CCTAATAGGATGCCCAGATCGTTAACC......................................................................................................................................................................................................................................................................................................................................................	27	2	1.00	2	0	1	1	0	0	0
..............................................................................................................................................................................................................CATTTCGATCCATTAAGCTTCAGGT...................................................................................................................................................................................	25	4	0.75	3	0	3	0	0	0	0
.........................TAATTTAAGTTTCAAACCTAATAG.........................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0
..............................................TAGGATGCCCAGATCGTTAACCTGAGCT................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	1	0
..............................................TAGGATGCCCAGATCGTTAACCTGAGC.................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0
........................................................................CTAATCGTTC-TAAG--CG----------TTCCCATAG............................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0
.......................................AACCTAATAGGATGCCCAGATCGTTAAC.......................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0
..............................TAAGTTTCAAACCTAATAGGATGCCCA.................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	1	0	0	0	0	0
............................TTTAAGTTTCAAACCTAATAGGATGCC...................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0
.................................................................ACCTGAGCTAATCGTTC-TAAG--CG----------T....................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	1	0	0	0	0	0
...............................................................TAACCTGAGCTAATCGTTC-TAAG--CG----------TTC..................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	1	0	0	0	0	0
.............................................................................................................................................................................................................ACATTTCGATCCATTAAGCTTCAGGT...................................................................................................................................................................................	26	4	0.50	2	1	1	0	0	0	0
.............................TTAAGTTTCAAACCTAATAGGATGCCCA.................................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	1	0	0	0	0	0
................ATGGTCGGTTAATTTAAGTTTCAAACC...............................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0
...............TATGGTCGGTTAATTTAAGTTTCAAACC...............................................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0
...............TATGGTCGGTTAATTTAAGTTTCAAAC................................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	1	0
..............................................................TTAACCTGAGCTAATCGTTC-TAAG--CG----------TT...................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0
............................................................................................................................................................................................................TACATTTCGATCCATTAAGCTTCA......................................................................................................................................................................................	24	4	0.50	2	1	0	0	0	1	0
...............................AAGTTTCAAACCTAATAGGATGCCC..................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0
................................................................AACCTGAGCTAATCGTTC-TAAG--CG----------AC...................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0
............................................................CGTTAACCTGAGCTAATCGTTC-TAAG--C................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0
.................................................................ACCTGAGCTAATCGTTC-TAAG--CG----------TTC..................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0
..............................................................TTAACCTGAGCTAATCGTTC-TAAG--C................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0
.............................................................................................................................ATACAT--------A---------------------------GCCTGGTGAAG........................................................................................................................................................................................................................................	18	2	0.50	1	0	0	1	0	0	0
.............................................................................................................................................................................................................ACATTTCGATCCATTAAGCTTCAGG....................................................................................................................................................................................	25	4	0.50	2	1	1	0	0	0	0
..............................................TAGGATGCCCAGATCGTTAACCTGAG..................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0
.............................TTAAGTTTCAAACCTAATAGGATGCCC..................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0
..................................................................CCTGAGCTAATCGTTC-TAAG--CG----------TTC..................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0
...........................................TAATAGGATGCCCAGATCGTTT.........................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	1
....................................................GCCCAGATCGTTAACCTGAGCTAATCGT..........................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	1	0
...................................................................CTGAGCTAATCGTTC-TAAG--CG----------TTCC.................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0
....................................TCAAACCTAATAGGATGCCCAGATCGTT..........................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0
............................................................................................................................................................................................................TACATTTCGATCCATTAAGCTTCAG.....................................................................................................................................................................................	25	4	0.25	1	0	0	1	0	0	0
............................................................................................................................................................................................................TACATTTCGATCCATTAAGCTTCAGGC...................................................................................................................................................................................	27	9	0.22	2	0	2	0	0	0	0
................................................................................................................................................................................................................TTTCGATCCATTAAGCTTCAGGTTA.................................................................................................................................................................................	25	6	0.17	1	1	0	0	0	0	0
................................................................................................................................................................................................................TTTCGATCCATTAAGCTTCAGGTTAT................................................................................................................................................................................	26	6	0.17	1	1	0	0	0	0	0
................................................................................................................................................................................................................TTTCGATCCATTAAGCTTCAGG....................................................................................................................................................................................	22	6	0.17	1	0	1	0	0	0	0
................................................................................................................................................................................................................TTTCGATCCATTAAGCTTCAGGTTATT...............................................................................................................................................................................	27	6	0.17	1	0	1	0	0	0	0
................................................................................................................................................................................................................TTTCGATCCATTAAGCTTCAGGT...................................................................................................................................................................................	23	6	0.17	1	1	0	0	0	0	0
..............................................................................................................................................................................................................CATTTCGATCCATTAAGCTTCAGGC...................................................................................................................................................................................	25	9	0.11	1	0	1	0	0	0	0
.........................................................................................................................................................................................................GTTTACATTTCGATCCATTAAGC..........................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................ATAAGTTTACATTTCGATC..................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................TAAGTTTACATTTCGATCCATTAAGCT.........................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0

droBip1

AACCATTAAG-GAAATATGGTCGGCAAATTTAAGTTTAATGTCTAATAGGATGCCGAGATCATTGACCTGGGTTAATTTTTC-TAAG-GTA----------ATCCCGTTAAT-AGA---------ATAAGT--------A---------------------------GCTTGCAGAGGACAAGAACGATAAAAAGACATATGCTTGCATTTTGATCCATTAAGTATTAGATTATTAGCTAA------ACACCA----TTTTT---G----------------AAAGTT-------------------------------------------------------------ATCAAGGTCAGACTGAAGACTGCATTCTGCATACATAAGAACTAGAGAGTTCGTTAAAG--	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCTTACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTTTGCAGACTGAATGCGGCTGTCAATTCACCTCGAAGCTAGAGGGCATGTTTAAGGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AACCATGTTC-GAAATACGAGCAGAGAATTTAAGTTTGGGGTCCAATTGGACGCCAAGATCGTCAACAAGCGTTATTCTTTC-CAAG-GTT----------CTCCCACTAAG-TGA---------ATAGGT--------G---------------------------ACA--------------------------------------TTTTGTGCT----------------------GA------ACGCTATGAA-----CGCTGAG------AACGAAAAG-----------------------------------------------------------------------------------------------------------------GCCCAA--CACAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AACAGTAGAC-TTTCAGTGACAGTCGAATTTTAATTTTGGGTCAAGAGGAACTCCTAAATCACTGACGGAATATATTCATAT-TATG----------------------AAG-AGA---------ATAGCT--------------------------------------------------------------------------------------------------------------------------------------TATA------------------------------------------------------------------------------------------------------------------------A-------ATGAAGGCGTAAC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CACCATAGAA-GTAACATGGTCACAAAGCTTAAGTTTTGGGTCAAGAAGGACGCCAAGGTCATCAACATGCGTGATTCTAGA-CACA-GCC----------ATATTGTCGGT--------------------------------------------------------------------TCACCCTAATAAATGTCATTACTTTACACTTTGCGTTATTAAAATCCAAAAGATTTTCACA------ACACCA----TGTCT---G----------------AAAAGCATTTATG-------AAC---TTCACGTCATCTGCGTGCATGATTACACGCGACTTTTTTTTTTTTTTTTCGCGCGGAGTCCTACGGCCCACTTACC--------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AACAGTGGAC-ACTAGGTGGCAGACATATTTAAGTTTTGGGTCCAGAAGAACATCTAAATCGTTAACTCAATATATACGGTT-AAGT-GGC----------CCAATTTTAAT-AAA---------ATAACT-------------------------------------------------------GATAAAATATCATTACGTTGCGTCTAAGGCAGTTAAAATTTAAAAGGTTGTAT----------------------------------------------------------------------TCACATCATTTATTTATTTA----------------------------------------ATTTATTTAT-----------------------------TT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GACAGTGGCC-ATTATGTGGCAATCAAATTTAAGTTTTGGGTCGAGAAGAACACCTAAATCGTTAAAAAATTC-----GGGC-AAGT-A-G----------TTTTCTTTTACCGT----ATTTTCAAAGTGGGAAATTCATCAAATATTGTTGAAAATTAAAAAAAAT---CT------------------------------TGAAGTCAAAGATG----------------------CTGATGTAGCT------------GTTCGAA--------------A-AAAAAATAAAACATAGGACGTAT-G--TATTACT------------------------------TG-TTTCCTAAAATAAATGTATTTGTTGATTT-----------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AACCATAGAG-GAAATATGGTCGGAAAACTTAAGTTTTGCATCCAGTAGGATGCCAAGATCTTCAACTGCATTAATTCTTTC-CAGA-GCT----------ACACCATGCAA-ATT---------ATAAGT--------G---------------------------GCAACT------------------------------TTAGGTCTTAGGCG----------------------AC------AGC------------GTTCGAA-------------------------------------------------------------------------------------------------------------------------------AACGAAAATACAAA	Size	Hit Count	Total Norm	Total
No Reads

dm3

GACAATAGTC-GAAATATGGTCAGAAAATTTTAGTTTAGGGTCCAGAAGAACACCAAGCTCATCAACCCGTGTTATTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGTTTAAAAAAAAACTTGGCGAATAGATTGGCTGGAAACTGGAACTT-------ACAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................GAATAGATTGGCTGGAAACTGGAACT............	26	1	19.00	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	3	0	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TAAAAAAAAACTTGGCGAATAGATTGGC..........................	28	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................TAGATTGGCTGGAAACTGGAACT............	23	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0
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.........C-GAAATATGGTCAGAAAATTTTAGTT......................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................TTTAGTTTAGGGTCCAGAA..........................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................TCAGAAAATTTTAGTTTAGGGTCCAGAA..........................................................................................................................................................................................................................................................................................................................................................................	28	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ATATGGTCAGAAAATTTTAGTTTAGG..................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSim2

TTTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTATTATTGCAGACTGAATGCGGCTGTCAATTCACCTCGAAGTTAGAGGGAATGTTTAAAGA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................GCGGCTGTCAATTCACCT.........................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................AATGCGGCTGTCAATTCACCT.........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................GCAGACTGAATGCGA.......................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSec2

GACAATAGTC-GAAAGATGGTCAGAAAATTTTAGTTTTGCGTCCAGAAGAACACCAAGATCATCAACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGGCA--CCCAATTA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................TTTTAGTTTTGCGTCCAGAAGAACAC....................................................................................................................................................................................................................................................................................................................................................................	26	3	0.67	2	1	0	1	0
...........................................................TCATCAACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGGCA--CCCAATT.	24	3	0.33	1	1	0	0	0
............................TTTTAGTTTTGCGTCCAGAAGAACACC...................................................................................................................................................................................................................................................................................................................................................................	27	3	0.33	1	1	0	0	0
............................TTTTAGTTTTGCGTCCAGAAGAACACCA..................................................................................................................................................................................................................................................................................................................................................................	28	3	0.33	1	1	0	0	0
.........................AAATTTTAGTTTTGCGTCCAGAAGAACAC....................................................................................................................................................................................................................................................................................................................................................................	29	3	0.33	1	1	0	0	0
...............................TAGTTTTGCGTCCAGAAGAACAC....................................................................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	1	0	0	0
........................................................AGATCATCAACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGGCA--C.......	21	3	0.33	1	1	0	0	0
........................................................AGATCATCAACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGGGCA--CCC.....	23	3	0.33	1	1	0	0	0
...............................TAGTTTTGCGTCCAGAAGAACACCA..................................................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	0	1	0
............................TTTTAGTTTTGCGTCCAGAAGAACA.....................................................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	1	0	0	0
................................AGTTTTGCGTCCAGAAGAACACCA..................................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	1	0	0	0
.........................................TCCAGAAGAACACCAAGATCATCAAC.......................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	2	0	0	0

droYak3

TCTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCAATTATTGCAGACTGAATGCGGCTGTCAATTCACCTCAAAGCTAGAGGGCATGTTTAAAGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................GAATGCGGCTGTCAATTCACCT.........................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................CAATTCACCTCAAAGCTAGA...............	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................GACTGAATGCGGCTGTCAATTCACCT.........................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................ATTGCAGACTGAATGCGGCTGTC..................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0

droEre2

TCTTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTTCTATTGCAGACTGAATGCGGCTGTCAATTCACCTCGAAGCTAGAGGGCATGTTTAAAGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................GCGGCTGTCAATTCACCTCG.......................	20	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................GCGGCTGTCAATTCACCTCGAAGCTAGAG..............	29	1	1.00	1	0	1	0	0	0	0	0

dwi_1570

scf2_1100000004577:1900834-1900984 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads