ID:

dwi_156

 Coordinate:

scf2_1100000001556:4124-4181 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
Gypsy-1_DGri-LTRLTRGypsy+
Gypsy16-I_Dpse-intLTRGypsy+
mature
  1. scf2_1100000005448:359-380 -
  2. dwi_156  scf2_1100000001556:4160-4181 -
  3. dwi_155  scf2_1100000011061:574-595 +
  4. scf2_1100000009760:498-519 +
  5. dwi_154  scf2_1100000004968:2463483-2463504 +
  6. scf2_1100000007297:607-628 +
star
  1. scf2_1100000012839:714-738 -
  2. dwi_156  scf2_1100000001556:4125-4149 -
  3. scf2_1100000001599:950-974 -
  4. scf2_1100000002370:957-981 -
  5. scf2_1100000014338:719-743 -
  6. scf2_1100000004596:1701-1725 -
  7. scf2_1100000007036:1335-1359 -
  8. scf2_1100000004721:287970-287994 -
  9. scf2_1100000004832:69158-69182 -
  10. scf2_1100000004832:78398-78422 -
  11. scf2_1100000004832:124075-124099 -
  12. scf2_1100000004909:1125774-1125798 -
  13. scf2_1100000004932:74550-74574 -
  14. scf2_1100000004932:80401-80425 -
  15. scf2_1100000004949:1537818-1537842 -
  16. scf2_1100000004961:3091537-3091561 -
  17. scf2_1100000004961:3098257-3098281 -
  18. scf2_1100000004963:184827-184851 -
  19. scf2_1100000004968:1477522-1477546 -
  20. scf2_1100000000032:775-799 -

Sense Strand Reads

AGTAAAGGAGTGGATTAGAGACACGTAGGGCAAAAAAAATCCTTGCTTCTTCGTGCCCCACGTTGGGCGCCATTTATTATGTAACGAACACGCGGGTGTCGGAGTGCACTCTCTGTCTTACTAACAAGTGGCTCGGCTGAGCTCAGGGAAAATGGGGG
***********************************........(((..(((((.(((((.((.((..((.(((.....)))...))..)))).))).))))))).)))..............************************************ 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V119
head
 V118
embryo
 V117
male body		 M020
head
.................................................TTCGTGCCCCACGTTGGGCGCCA...................................................................................... 23 0 4 336.00 1344 1158 110 68 8 0
..................................................TCGTGCCCCACGTTGGGCGCCA...................................................................................... 22 0 6 268.83 1613 1276 160 130 10 37
................................................GTTCGTGCCCCACGTTGGGCGCCA...................................................................................... 24 1 6 264.00 1584 492 845 162 77 8
...................................................CGTGCCCCACGTTGGGCGCCA...................................................................................... 21 0 6 59.67 358 325 19 8 0 6
................................................GTTCGTGCCCCACGTTGGG........................................................................................... 19 1 18 54.89 988 786 4 193 5 0
...............................................GGTTCGTGCCCCACGTTGGGCGCCA...................................................................................... 25 2 10 45.40 454 232 202 16 4 0
................................................GTTCGTGCCCCACGTTGG............................................................................................ 18 1 19 16.53 314 270 2 19 23 0
....................................................GTGCCCCACGTTGGGCGCCA...................................................................................... 20 0 10 11.00 110 71 30 5 3 1
.................................................TTCGTGCCCCACGTTGGG........................................................................................... 18 0 5 9.20 46 44 0 1 0 1
.................................................TTCGTGCCCCACGTTGGGCG......................................................................................... 20 0 4 5.00 20 20 0 0 0 0
................................................GTTCGTGCCCCACGTTGGGC.......................................................................................... 20 1 17 4.47 76 56 4 7 0 9
................................................GTTCGTGCCCCACGTTGGGCGCCG...................................................................................... 24 2 7 3.43 24 22 2 0 0 0
.........................................................................................................................TAACAAGTGGCTCGGCTGAGCTCA............. 24 0 20 3.30 66 10 0 56 0 0
.................................................TTCGTGCCCCACGTTGGGCGCC....................................................................................... 22 0 4 2.75 11 11 0 0 0 0
..................................................TCGTGCCCCACGTTGGGCGCC....................................................................................... 21 0 6 2.50 15 15 0 0 0 0
.................................................TTCGTGCCCCAGGTTGGGCGCCA...................................................................................... 23 1 4 2.00 8 8 0 0 0 0
.................................................TTCGCGCCCCACGTTGGGCGCCA...................................................................................... 23 1 8 1.88 15 14 1 0 0 0
.........................................................................................................................TAACAAGTGGCTCGGCTGAGCTCAGGG.......... 27 0 20 1.65 33 33 0 0 0 0
................................................GTTCGTGCCCCACGTTGGGCGCCC...................................................................................... 24 2 8 1.63 13 0 12 0 0 1
................................................CTTCGTGCCCCACGTTGGGCGCCA...................................................................................... 24 0 4 1.50 6 4 1 1 0 0
.................................................TTCGTGCCCCAAGTTGGGCGCCA...................................................................................... 23 1 4 1.50 6 6 0 0 0 0
.................................................TTCGTGCCCCACGTTGGGCGCCG...................................................................................... 23 1 4 1.50 6 6 0 0 0 0
................................................GTTCGTGCCCAACGTTGGGCGCCA...................................................................................... 24 2 6 1.33 8 0 5 3 0 0
................................................GTTCGTGCCCCACGTTGGGCGCC....................................................................................... 23 1 6 1.33 8 8 0 0 0 0
..................................................................................AACGAACACGCGGGTGTCGGAGTGC................................................... 25 0 20 1.20 24 1 0 23 0 0
..................................................TCGCGCCCCACGTTGGGCGCCA...................................................................................... 22 1 20 1.20 24 19 4 1 0 0
..................................................TCGTGCCCCACGTTGGGCGCCG...................................................................................... 22 1 6 1.17 7 5 0 0 0 2
.................................................................................................................TGTCTTACTAACAAGTGGCTCGGCT.................... 25 0 20 1.05 21 20 0 1 0 0
...................................................CGTGCCCCACGTTGGGCGCCG...................................................................................... 21 1 6 1.00 6 6 0 0 0 0
................................................GTTCGTGCCCCACGTTGGGCG......................................................................................... 21 1 17 1.00 17 16 0 1 0 0
.................................................TTCGTGCCCCACGTTGGGCGCCT...................................................................................... 23 1 4 1.00 4 4 0 0 0 0
.....................................................TGCCCCACGTTGGGCGCCA...................................................................................... 19 0 20 0.95 19 19 0 0 0 0
..................................................TCGTGCCCCACATTGGGCGCCA...................................................................................... 22 1 6 0.83 5 5 0 0 0 0
................................................GTTCGTGCCCCACGTTAGGCGCCA...................................................................................... 24 2 6 0.83 5 0 5 0 0 0
...................................................CGTGCCCCACGTTGGGCGCC....................................................................................... 20 0 6 0.83 5 5 0 0 0 0
................................................GTTCGTGCACCACGTTGGGCGCCA...................................................................................... 24 2 6 0.83 5 0 5 0 0 0
.................................................TTCGTGCCCCACGTTGAGCGCCA...................................................................................... 23 1 4 0.75 3 0 3 0 0 0
.................................................TTCGTGCCCCACGCTGGGCGCCA...................................................................................... 23 1 4 0.75 3 2 0 1 0 0
.................................................TTCGTGCCCCACGTTGGGCGC........................................................................................ 21 0 4 0.75 3 3 0 0 0 0
................................................GTTCGTGACCCACGTTGGGCGCCA...................................................................................... 24 2 6 0.67 4 0 4 0 0 0
................................................GTTAGTGCCCCACGTTGGGCGCCA...................................................................................... 24 2 15 0.60 9 0 9 0 0 0
..................................................TCGTGCCCCACGTTGGGC.......................................................................................... 18 0 7 0.57 4 0 0 0 0 4
.................................................CTCGTGCCCCACGTTGGGCGCCA...................................................................................... 23 1 6 0.50 3 3 0 0 0 0
...............................................TGTTCGTGCCCCACGTTGGGCGCCA...................................................................................... 25 1 6 0.50 3 2 1 0 0 0
................................................GTTCGTGCCCCACGTTGGGCGACA...................................................................................... 24 2 12 0.50 6 0 6 0 0 0
.................................................TTCGTGCCCAACGTTGGGCGCCA...................................................................................... 23 1 4 0.50 2 0 2 0 0 0
.................................................TTCGTGCCCCACGTTGCGCGCCA...................................................................................... 23 1 4 0.50 2 0 1 1 0 0
.................................................TTCGTGCCCCACGTTGGGC.......................................................................................... 19 0 4 0.50 2 2 0 0 0 0
...............................................CGTTCGTGCCCCACGTTGGGCGCCA...................................................................................... 25 2 6 0.50 3 2 1 0 0 0
.................................................TTCGTGCCCCATGTTGGGCGCCA...................................................................................... 23 1 4 0.50 2 2 0 0 0 0
.............................................CGTGTTCGTGCCCCACGTTGGGCGCCA...................................................................................... 27 2 4 0.50 2 0 2 0 0 0
.................................................TTCGTGCCCCACATTGGGCGCCA...................................................................................... 23 1 4 0.50 2 2 0 0 0 0
.................................................TTCGTGCCCCACGTTGGGCGACA...................................................................................... 23 1 4 0.50 2 0 1 1 0 0
......................................................................................................................TACTAACAAGTGGCTCGGCTGAGCTC.............. 26 0 20 0.45 9 0 0 8 1 0
................................................GTTCGTGTCCCACGTTGGGCGCCA...................................................................................... 24 2 9 0.44 4 0 3 1 0 0
................................................GTTCGTGCCCCACGTTGGCCGCCA...................................................................................... 24 2 7 0.43 3 0 3 0 0 0
................................................GTTCGTGCCCCAAGTTGGGCGCCA...................................................................................... 24 2 7 0.43 3 0 3 0 0 0
................................................GTTCGTGCCCCACGTTGGGCGTCA...................................................................................... 24 2 7 0.43 3 0 3 0 0 0
.................................................TTCGTGCCCCACGTTGGGCGCCC...................................................................................... 23 1 5 0.40 2 2 0 0 0 0
....................................................GTGCCCCACGTTGGGCGCCG...................................................................................... 20 1 10 0.40 4 4 0 0 0 0
................................................GTTCATGCCCCACGTTGGGCGCCA...................................................................................... 24 2 10 0.40 4 0 4 0 0 0
..................................................ACGTGCCCCACGTTGGGCGCCA...................................................................................... 22 1 8 0.38 3 3 0 0 0 0
................................................GTTCGTGCCCCCCGTTGGGCGCCA...................................................................................... 24 2 6 0.33 2 0 2 0 0 0
..................................................TCGTGCCCTACGTTGGGCGCCA...................................................................................... 22 1 6 0.33 2 2 0 0 0 0
..................................................TCGTGCCCCACGTTGGGCGCCAC..................................................................................... 23 1 6 0.33 2 2 0 0 0 0
...............................................GGTTCGTGCCCCACGTTGGGCGCC....................................................................................... 24 2 12 0.33 4 3 0 1 0 0
................................................GTTCGTGCCCCAGGTTGGGCGCCA...................................................................................... 24 2 6 0.33 2 0 2 0 0 0
................................................GTTCGTGCCCCACATTGGGCGCCA...................................................................................... 24 2 6 0.33 2 0 1 1 0 0
..................................................TCGTGCCCAACGTTGGGCGCCA...................................................................................... 22 1 6 0.33 2 0 2 0 0 0
................................................GTTCGTGCCCCGCGTTGGGCGCCA...................................................................................... 24 2 6 0.33 2 1 1 0 0 0
................................................CTTCGAGCCCCACGTTGGGCGCCA...................................................................................... 24 1 6 0.33 2 2 0 0 0 0
................................................GTCCGTGCCCCACGTTGGGCGCCA...................................................................................... 24 2 6 0.33 2 0 2 0 0 0
..................................................TCGTGCCCCACCTTGGGCGCCA...................................................................................... 22 1 6 0.33 2 2 0 0 0 0
................................................GTTCGTGCCCCACGTTGGACGCCA...................................................................................... 24 2 9 0.33 3 0 3 0 0 0
..................................................TCGTGCCCCGCGTTGGGCGCCA...................................................................................... 22 1 6 0.33 2 2 0 0 0 0
................................................GTTCGTGCCCCACGTGGGGCGCCA...................................................................................... 24 2 6 0.33 2 1 1 0 0 0
................................................GTTCGTGCCCCACGCTGGGCGCCA...................................................................................... 24 2 6 0.33 2 0 2 0 0 0
................................................GTTCGTGCCCCACGTTGAGCGCCA...................................................................................... 24 2 6 0.33 2 0 1 1 0 0
................................................GTTCGTGCCCCACGGTGGGCGCCA...................................................................................... 24 2 13 0.31 4 3 0 0 1 0
...................................................CGTGCCCCACGGTGGGCGCCA...................................................................................... 21 1 13 0.31 4 3 1 0 0 0
......................................................................................................................TACTAACAAGTGGCTCGGCTGAGCTCA............. 27 0 20 0.30 6 0 0 6 0 0
..................................................TCGTGCCACACGTTGGGCGCCA...................................................................................... 22 1 7 0.29 2 0 2 0 0 0
................................................GTTCGTGCCCCACGTTGGGTGCCA...................................................................................... 24 2 7 0.29 2 0 2 0 0 0
................................................ATTCGTGCCCCACGTTGGGCGCCA...................................................................................... 24 1 7 0.29 2 1 1 0 0 0
..................................................TCGTGCCCCACGTTGGGCG......................................................................................... 19 0 7 0.29 2 2 0 0 0 0
................................................GTTCGTCCCCCACGTTGGGCGCCA...................................................................................... 24 2 7 0.29 2 0 1 1 0 0
..................................................TCGTGCCCCACGTTGGGCTCCA...................................................................................... 22 1 7 0.29 2 0 2 0 0 0
............................................GAATGTTCGTGCCCCACGTTGGGCGCCA...................................................................................... 28 3 4 0.25 1 1 0 0 0 0
.................................................................................................................TGTCTTACTAACAAGTGGCTCGG...................... 23 0 20 0.25 5 3 0 2 0 0
.................................................TTCGTGCCCCACGTTGGGCGCCAG..................................................................................... 24 1 4 0.25 1 1 0 0 0 0
.................................................TCCGTGCCCCACGTTGGGCGCCA...................................................................................... 23 1 4 0.25 1 1 0 0 0 0
.................................................TTCGTACCCCACGTTGGGCGCCA...................................................................................... 23 1 4 0.25 1 0 1 0 0 0
.................................................TTCGTGCCCCACGTTGGGCGCCAC..................................................................................... 24 1 4 0.25 1 1 0 0 0 0
.................................................TTCGTGCCCCACGTCGGGCGCCA...................................................................................... 23 1 4 0.25 1 1 0 0 0 0
...........................................CGCGGCTTCGTGCCCCACGTTGGGCGCCA...................................................................................... 29 3 4 0.25 1 0 0 1 0 0
..........................................TCGTGTCTTCGTGCCCCACGTTGGGCGCCA...................................................................................... 30 3 4 0.25 1 0 0 1 0 0
................................................GTTCGTGCCCCACGGTGGG........................................................................................... 19 2 20 0.25 5 5 0 0 0 0
.................................................TTCGTGCCCCAAGTTGGGCG......................................................................................... 20 1 4 0.25 1 1 0 0 0 0
...............................................GCTTCGTGCCCCACGTTGGGCGCCA...................................................................................... 25 1 4 0.25 1 0 1 0 0 0
.............................................CTTCTTCGTGCCCCACGTTGGGCGCCA...................................................................................... 27 0 4 0.25 1 1 0 0 0 0
.................................................TTCGTGCCCCGCGTTGGGCGCCA...................................................................................... 23 1 4 0.25 1 1 0 0 0 0
.............................................TGTGTTCGTGCCCCACGTTGGGCGCCA...................................................................................... 27 3 9 0.22 2 0 1 0 1 0
.............................................CGGGTTCGTGCCCCACGTTGGGCGCCA...................................................................................... 27 3 9 0.22 2 0 1 0 1 0
...............................................TGTTCGTGCCCCACGTTGG............................................................................................ 19 1 9 0.22 2 2 0 0 0 0
..................................................GCGTGCCCCACGTTGGGCGCCA...................................................................................... 22 1 9 0.22 2 1 1 0 0 0
................................................GTTCGTGCCCCGCGTTGGG........................................................................................... 19 2 18 0.22 4 4 0 0 0 0
.................................................TTCGTGCCCCACGTAGGG........................................................................................... 18 1 5 0.20 1 1 0 0 0 0
...............................................GGTTCGTGCCCCACGCTGGGCGCCA...................................................................................... 25 3 10 0.20 2 0 2 0 0 0
................................................GTTCGTGCCCCACGTTGGGCGC........................................................................................ 22 1 10 0.20 2 2 0 0 0 0
..................................................................................AACGAACACGCGGGTGTCGGAGTG.................................................... 24 0 20 0.20 4 0 0 4 0 0
................................................CTTCGGGCCCCACGTTGGGC.......................................................................................... 20 1 5 0.20 1 1 0 0 0 0
...................................................................................................................TCTTACTAACAAGTGGCTCGGCTGAGC................ 27 0 20 0.20 4 4 0 0 0 0
................................................CATCGTGCCCCACGTTGGGCGCCA...................................................................................... 24 1 5 0.20 1 1 0 0 0 0
...............................................GGTTCGTGCACCACGTTGGGCGCCA...................................................................................... 25 3 10 0.20 2 0 2 0 0 0
.................................................................................................................TGTCTTACTAACAAGTGGCTCGGCTGAG................. 28 0 20 0.20 4 4 0 0 0 0
...............................................GGTTCGTGCCCAACGTTGGGCGCCA...................................................................................... 25 3 10 0.20 2 2 0 0 0 0
.....................................................................................................................................CGGCTGAGCTCAGGGAAAATGG... 22 0 20 0.20 4 4 0 0 0 0
...................................AAAATCCTTGCTTCTTCGTGCCCCACGT............................................................................................... 28 0 5 0.20 1 0 0 1 0 0
................................................TTTCGTGCCCCACGTTGGGCGCCA...................................................................................... 24 1 5 0.20 1 0 1 0 0 0
...............................................GGTTCGTGCCCCAAGTTGGGCGCCA...................................................................................... 25 3 11 0.18 2 0 2 0 0 0
................................................GTTCGTGCCCCACCTTGGGCGCCA...................................................................................... 24 2 6 0.17 1 0 1 0 0 0
..................................................TCGTGCCCCACGTAGGGCGCCA...................................................................................... 22 1 6 0.17 1 1 0 0 0 0
..................................................TCGTGCCCCACGTCGGGCGCCA...................................................................................... 22 1 6 0.17 1 1 0 0 0 0
................................................GTTCGTGCCCCACGTTGGGCACCA...................................................................................... 24 2 6 0.17 1 0 1 0 0 0
..................................................TCGTGCCCCACGTTGGGCGCCAG..................................................................................... 23 1 6 0.17 1 1 0 0 0 0
..................................................TCGTGACCCACGTTGGGCGCCA...................................................................................... 22 1 6 0.17 1 0 1 0 0 0
...............................................TCGTGGTGCCCCACGTTGGGCGCCA...................................................................................... 25 2 6 0.17 1 0 0 1 0 0
..................................................TCGTGCCCCACGTTGGGCACCA...................................................................................... 22 1 6 0.17 1 1 0 0 0 0
..................................................TCGTGCCCCACTTTGGGCGCCA...................................................................................... 22 1 6 0.17 1 1 0 0 0 0
..................................................TCGTGCCCCACGTTGCGCGCCA...................................................................................... 22 1 6 0.17 1 1 0 0 0 0
..................................................TCGTGCCCCGCGTTGGGCGCC....................................................................................... 21 1 6 0.17 1 1 0 0 0 0
...................................................CGTGCCCCACGTTGAGCGCCA...................................................................................... 21 1 6 0.17 1 0 1 0 0 0
................................................GTTCGTTCCCCACGTTGGGCGCCA...................................................................................... 24 2 6 0.17 1 0 1 0 0 0
..............................................ATGTTCGTGCCCCACGTTGGGCGCCA...................................................................................... 26 2 6 0.17 1 1 0 0 0 0
..................................................TCGTGCCCCACGTTGGGCGACA...................................................................................... 22 1 6 0.17 1 0 1 0 0 0
..................................................TCGTGCCCCACGCTGGGCGCCA...................................................................................... 22 1 6 0.17 1 0 1 0 0 0
..............................................TGGTTCGTGCCCCACGTTGGGCGCCA...................................................................................... 26 2 6 0.17 1 1 0 0 0 0
................................................GTTCGTGCCCCTCGTTGGGCGCCA...................................................................................... 24 2 6 0.17 1 1 0 0 0 0
................................................GTTTGTGCCCCACGTTGGGCGCCA...................................................................................... 24 2 13 0.15 2 0 1 0 1 0
..................................................TCGTGCCCCACGGTGGGCGCCA...................................................................................... 22 1 13 0.15 2 1 0 0 0 1
.....................................................................................................................................CGGCTGAGCTCAGGGAAAATGGG.. 23 0 20 0.15 3 3 0 0 0 0
...................................................CGCGCCCCACGTTGGGCGCCA...................................................................................... 21 1 20 0.15 3 3 0 0 0 0
.................................................................................................................TGTCTTACTAACAAGTGGCTCGGCTG................... 26 0 20 0.15 3 0 0 3 0 0
.............................................................................................................TCTCTGTCTTACTAACAAGTGGCTCG....................... 26 0 20 0.15 3 3 0 0 0 0
...............................................................................................................TCTGTCTTACTAACAAGTGGCTCGGC..................... 26 0 20 0.15 3 3 0 0 0 0
.................................................................................TAACGAACACGCGGGTGTCGGAGTG.................................................... 25 0 20 0.15 3 3 0 0 0 0
................................................GTTCGTGCCCCAAGCTGGGCGCCA...................................................................................... 24 3 7 0.14 1 0 1 0 0 0
............................................TCGTGTTCGTGCCCCACGTTGGGCGCCA...................................................................................... 28 3 7 0.14 1 0 0 1 0 0
............................................GTGTGTTCGTGCCCCACGTTGGGCGCCA...................................................................................... 28 3 7 0.14 1 0 1 0 0 0
..................................................TCGTGCCCCACGTTGGGCCCCA...................................................................................... 22 1 7 0.14 1 0 1 0 0 0
................................................ATTCGTGCCCAACGTTGGGCGCCA...................................................................................... 24 2 7 0.14 1 0 1 0 0 0
...................................................CGTGCCCCACGATGGGCGCCA...................................................................................... 21 1 7 0.14 1 1 0 0 0 0
................................................GTCCGTGCCCCACGTTGGGCGCCG...................................................................................... 24 3 7 0.14 1 0 1 0 0 0
..................................................TCGTGCCCCACGTTGGGCGCGA...................................................................................... 22 1 7 0.14 1 1 0 0 0 0
................................................GTTCGTGCTCCACGTTGGGCGTCA...................................................................................... 24 3 7 0.14 1 0 0 1 0 0
.................................................TTCGTGCCCCACGTTGGAC.......................................................................................... 19 1 7 0.14 1 0 0 0 0 1
................................................GTTCGTGCCCCACGTTGCGTGCCA...................................................................................... 24 3 7 0.14 1 0 1 0 0 0
.................................................TTTGTGCCCCACGTTGGGCGCCA...................................................................................... 23 1 7 0.14 1 1 0 0 0 0
................................................TTTCGTGCCCCACGTTGGG........................................................................................... 19 1 7 0.14 1 1 0 0 0 0
................................................CTTCGAGCCCCACGTTGGGCGCCG...................................................................................... 24 2 7 0.14 1 0 1 0 0 0
.................................................TTCGTGCCCCACGTTGGACGCCA...................................................................................... 23 1 7 0.14 1 0 1 0 0 0
..................................................TCGTGCCCCACGTTGGGCGC........................................................................................ 20 0 7 0.14 1 1 0 0 0 0
................................................GTTCGTGCCCCACGTTGGGCTCCA...................................................................................... 24 2 7 0.14 1 0 0 1 0 0
................................................GTTCGTGCCCCACGTTGGGGGCCA...................................................................................... 24 2 7 0.14 1 0 1 0 0 0
............................................GTTGGTTCGTGCCCCACGTTGGGCGCCA...................................................................................... 28 3 7 0.14 1 0 1 0 0 0
..............................................ATGTTCGTGCCCCACGTTGGG........................................................................................... 21 2 8 0.13 1 1 0 0 0 0
................................................GTTCGTGCCCCAAGTTGGCCGCCA...................................................................................... 24 3 8 0.13 1 0 1 0 0 0
................................................GTTCGTGCCGCACGTTGGGGGCCA...................................................................................... 24 3 8 0.13 1 0 0 0 1 0
................................................GTACGTGCCCCACGTTGGGCGCCA...................................................................................... 24 2 8 0.13 1 0 1 0 0 0
...............................................GCGCCGTGCCCCACGTTGGGCGCCA...................................................................................... 25 3 8 0.13 1 1 0 0 0 0
...............................................AGTTCGTGCCCCACGTTGGGCGCCA...................................................................................... 25 2 8 0.13 1 1 0 0 0 0
................................................GTTCGTGCCCCACGTTGGGCGCGA...................................................................................... 24 2 8 0.13 1 0 1 0 0 0
.................................................TTCATGCCCCACGTTGGGCGCCA...................................................................................... 23 1 8 0.13 1 0 0 0 0 1
................................................ATTCGTGCCCCACGTTGGG........................................................................................... 19 1 9 0.11 1 0 0 1 0 0
................................................GTTCGTGCCCCACGCTGGG........................................................................................... 19 2 18 0.11 2 1 0 1 0 0
.............................................TTGGTTCGTGCCCCACGTTGGGCGCCA...................................................................................... 27 3 9 0.11 1 0 1 0 0 0
..................................................TCGTGCCCCACGTTTGGCGCCA...................................................................................... 22 1 9 0.11 1 1 0 0 0 0
..................................................................................AACGAACACGCGGGTGTCGGAGTGCAC................................................. 27 0 20 0.10 2 2 0 0 0 0
..............................................TCTCTCGTGCCCCACGTTGGGCGCCA...................................................................................... 26 3 10 0.10 1 1 0 0 0 0
...........................................................................................................................ACAAGTGGCTCGGCTGAGCTCAGG........... 24 0 20 0.10 2 2 0 0 0 0
.........................................................................................................................TAACAAGTGGCTCGGCTGAG................. 20 0 20 0.10 2 1 0 0 1 0
...............................................CGTTCGTGCCCCACGTTGGG........................................................................................... 20 2 20 0.10 2 2 0 0 0 0
..................................................TGGTGCCCCACGTTGGGCGCCA...................................................................................... 22 1 10 0.10 1 0 1 0 0 0
....................................................GTGCCCCACGTTGGGCGCC....................................................................................... 19 0 10 0.10 1 1 0 0 0 0
...............................................GGTTCGTGCCCCACGTTGTGCGCCA...................................................................................... 25 3 10 0.10 1 0 1 0 0 0
.................................................TTCGTGCCCCACGTTGGGGCCA....................................................................................... 22 3 10 0.10 1 1 0 0 0 0
...............................................CGTTCGTGCCCCACGTTGG............................................................................................ 19 2 20 0.10 2 2 0 0 0 0
...............................................GGTTCGTGCCCCACATTGGGCGCCA...................................................................................... 25 3 10 0.10 1 0 1 0 0 0
................................................GTTGGTGCCCCACGTTGGGCGCCA...................................................................................... 24 2 10 0.10 1 0 1 0 0 0
....................................................GTGCCCCACGCTGGGCGCCA...................................................................................... 20 1 10 0.10 1 0 1 0 0 0
...............................................GGTTCGTGCCCCACGTGGGGCGCCA...................................................................................... 25 3 10 0.10 1 0 1 0 0 0
...............................................GGTTCGTGCCCCACGTTGAGCGCCA...................................................................................... 25 3 10 0.10 1 0 1 0 0 0
...............................................GGTTCGTGCCCCACGTCGGGCGCCA...................................................................................... 25 3 10 0.10 1 0 1 0 0 0
...............................................GGTTCGTGCCCCACTTTGGGCGCCA...................................................................................... 25 3 10 0.10 1 0 1 0 0 0
...............................................GGTTCGTGCCCCCCGTTGGGCGCCA...................................................................................... 25 3 10 0.10 1 0 1 0 0 0
...............................................GGTTCGTGCCCCACGTTGGGCACCA...................................................................................... 25 3 10 0.10 1 0 1 0 0 0
..................................................................................................TCGGAGTGCACTCTCTGTCTTACTAACA................................ 28 0 20 0.10 2 2 0 0 0 0
.................................................TTCCTGCCCCACGTTGGGCGCCA...................................................................................... 23 1 11 0.09 1 0 1 0 0 0
...............................................GGTTCGTCCCCCACGTTGGGCGCCA...................................................................................... 25 3 12 0.08 1 0 1 0 0 0
...............................................GGTTCGTGCCCCACGTTGGGCTCCA...................................................................................... 25 3 12 0.08 1 0 1 0 0 0
............................................GATTCGTCGTGCACCACGTT.............................................................................................. 20 3 12 0.08 1 0 0 0 1 0
...............................................GGTCCGTGCCCCACGTTGGGCGCCA...................................................................................... 25 3 12 0.08 1 0 0 1 0 0
..............................................AGGTTCGTGCCCCACGTTGGGCGCCA...................................................................................... 26 3 12 0.08 1 1 0 0 0 0
.................................................TTCGTGCCCCACGGTGGG........................................................................................... 18 1 12 0.08 1 1 0 0 0 0
................................................GTTCGTGCCCCACGGTGGGCGCC....................................................................................... 23 2 13 0.08 1 1 0 0 0 0
................................................GTTTGTGCCCCACTTTGGGCGCCA...................................................................................... 24 3 13 0.08 1 0 1 0 0 0
.......................................................CCCCACGTTGGGCGCCAT..................................................................................... 18 0 14 0.07 1 0 0 0 0 1
..................................................TCGTGCCCCACGGTGGGCGC........................................................................................ 20 1 14 0.07 1 0 0 1 0 0
..................................................TCGTGCCTCACGTTGGGCGCCA...................................................................................... 22 1 14 0.07 1 0 1 0 0 0
................................................GTTCGTGCCCCACGTTTGGCGACA...................................................................................... 24 3 15 0.07 1 0 1 0 0 0
................................................GTTCGTGCCTCACGTTGGGCGCCA...................................................................................... 24 2 15 0.07 1 0 1 0 0 0
.......................................................CCCCACGTTGGGCGCCTT..................................................................................... 18 1 16 0.06 1 0 0 0 0 1
...............................................TCATCGGACCCCACGTTGGGCGCCA...................................................................................... 25 3 16 0.06 1 1 0 0 0 0
................................................GTTCGTGCCCCACGTCGGGCG......................................................................................... 21 2 17 0.06 1 1 0 0 0 0
................................................GTTCGTGCCCCGCGTTGGGC.......................................................................................... 20 2 17 0.06 1 1 0 0 0 0
................................................GTTCGTGCGCCACGTTGGG........................................................................................... 19 2 18 0.06 1 0 0 1 0 0
................................................GTTCGTGCCCCACGTTGTG........................................................................................... 19 2 18 0.06 1 0 0 1 0 0
................................................CGTGGAGCCCCACGTTGGGCGCCA...................................................................................... 24 3 18 0.06 1 0 0 0 0 1
................................................GTTCGTGCCCCACGTCGGG........................................................................................... 19 2 18 0.06 1 0 0 1 0 0
................................................GTCCGTGCCCCACGTTGGG........................................................................................... 19 2 18 0.06 1 0 0 1 0 0
................................................GTTCGTGCACCACGTTGGG........................................................................................... 19 2 18 0.06 1 0 0 1 0 0
................................................GTTCGTGCCCGACGTTGGG........................................................................................... 19 2 18 0.06 1 0 0 1 0 0
................................................GTTCGTGCCCAACGTTGGG........................................................................................... 19 2 18 0.06 1 0 1 0 0 0
................................................GTTCGTGCCCCACGTGGGG........................................................................................... 19 2 18 0.06 1 1 0 0 0 0
................................................GTTCGTGCCCCACGTTGGGG.......................................................................................... 20 2 19 0.05 1 1 0 0 0 0
................................................GTTCGTGCCCCACGTTGAG........................................................................................... 19 2 19 0.05 1 1 0 0 0 0
................................................GTTCGTACCCCACGTTGGG........................................................................................... 19 2 20 0.05 1 0 0 1 0 0
.............................................................................................................TCTCTGTCTTACTAACAAGTGGCTCGGCT.................... 29 0 20 0.05 1 1 0 0 0 0
.......................................................................................ACACGCGGGTGTCTGAGTGCACT................................................ 23 1 20 0.05 1 0 0 1 0 0
...................................................................................................................TCTTACTAACAAGTGGCTCGGCTGAGCTC.............. 29 0 20 0.05 1 0 0 1 0 0
....................................................................................CGAACACGCGGGTGTCGGAGTGCAC................................................. 25 0 20 0.05 1 1 0 0 0 0
.................................................................................................................TGTCTTACTAACAAGTGGCTCGGCTGA.................. 27 0 20 0.05 1 0 0 1 0 0
................................................GTTCGTGCCCCCCGTTGG............................................................................................ 18 2 20 0.05 1 1 0 0 0 0
.............................................................................................................TCTCTGTCTTACTAACAAGTGGCT......................... 24 0 20 0.05 1 0 0 1 0 0
..................................................................................................................GTCTTACTAACAAGTGGCTCGGCT.................... 24 0 20 0.05 1 1 0 0 0 0
...............................................CGTTCGTGCCCCACGTTG............................................................................................. 18 2 20 0.05 1 1 0 0 0 0
......................................................................................................AGTGCACTCTCTGTCTTACTAACAAG.............................. 26 0 20 0.05 1 1 0 0 0 0
.............................................................................................................TCTCTGTCTTACTAACAAGTGGCTCGG...................... 27 0 20 0.05 1 0 0 0 1 0
..........................................................................................................................AACAAGTGGCTAGGCTGAGCTCAGGG.......... 26 1 20 0.05 1 1 0 0 0 0
.........................................................................................................................TAACAAGTGGCTCGGCCGAGCTCAGG........... 26 1 20 0.05 1 1 0 0 0 0
................................................GTTCGTACCCCACGTTGG............................................................................................ 18 2 20 0.05 1 0 0 1 0 0
................................................GTTCGTGCCCCGCGTTGG............................................................................................ 18 2 20 0.05 1 1 0 0 0 0
.........................................................................................................................TAACAAGTGGCTCGGCTGAGCA............... 22 1 20 0.05 1 0 0 1 0 0
.................................................................................................................TGTCTTACTAACAAGTGGCTCCGCTG................... 26 1 20 0.05 1 1 0 0 0 0
..................................................................................................................GTCTTACTAACAAGTGGCTCAGCTGAGC................ 28 1 20 0.05 1 0 0 1 0 0
.........................................................................................................................TAACAAGTGGCTCGGCTGAGCTCT............. 24 1 20 0.05 1 0 0 1 0 0
................................................GTTTGTGCCCCACGTTGG............................................................................................ 18 2 20 0.05 1 1 0 0 0 0
.................................................................................TAACGAACACGCGGGTGTAGGAGTGC................................................... 26 1 20 0.05 1 0 0 1 0 0
...............................................GCTTCGGGCCCCACGTTGGG........................................................................................... 20 2 20 0.05 1 0 0 1 0 0
....................................................................................................GGAGTGCACTCTCTGTCTTAC..................................... 21 0 20 0.05 1 1 0 0 0 0
.....................................................................................GAACACGCGGGTGTCGGAGTGCACTT............................................... 26 1 20 0.05 1 1 0 0 0 0
................................................GTTCGTTCCCCACGTTGG............................................................................................ 18 2 20 0.05 1 0 0 1 0 0
...............................................GGTTCCTGCCCCACGTTGGGCGCCA...................................................................................... 25 3 20 0.05 1 0 1 0 0 0
.........................................................................................................................TAACAAGTGGCTCGGCTGATC................ 21 1 20 0.05 1 0 0 1 0 0
.........................................................................................ACGCGGGTGTCGGAGTGCACTCTCTGT.......................................... 27 0 20 0.05 1 0 0 0 1 0
........................................................................................................TGCACTCTCTGTCTTACTAACAAG.............................. 24 0 20 0.05 1 1 0 0 0 0
...................................................................................................CGGAGTGCACTCTCTGTCTTACTAACAAG.............................. 29 0 20 0.05 1 1 0 0 0 0
................................................GTTCGTGCCCCACGGTGGGC.......................................................................................... 20 2 20 0.05 1 1 0 0 0 0
...............................................................................................................TCTGTCTTACTAACAAGTGGCTCCCCC.................... 27 3 20 0.05 1 0 0 1 0 0
..................................................................................................TCGGAGTGCACTCTCTGTCTTAC..................................... 23 0 20 0.05 1 1 0 0 0 0
..................................................................................................................GTCTTACTAACAAGTGGCTCGG...................... 22 0 20 0.05 1 1 0 0 0 0
.................................................................................................................TGTCTTACTAACAAGTGGCTCCCC..................... 24 2 20 0.05 1 0 0 1 0 0
...............................................................................................................TCTGTCTTACTAACAAGTGGCTCGGCT.................... 27 0 20 0.05 1 1 0 0 0 0
..............................................GTGTTCGTGCCCCACGTTGG............................................................................................ 20 2 20 0.05 1 1 0 0 0 0
....................................................................................CGAACACGCGGGTGTCGGAGTGCACT................................................ 26 0 20 0.05 1 0 0 1 0 0
................................................GTTCATGCCCCACGTTGGG........................................................................................... 19 2 20 0.05 1 0 0 1 0 0
.....................................................................................................................TTACTAACAAGTGGCCCGGC..................... 20 1 20 0.05 1 1 0 0 0 0
................................................................................................................................TGGCTCGGCTGAGCTCAGGGAAAATG.... 26 0 20 0.05 1 1 0 0 0 0
...................................................................................................................TCTTACTAACAAGTGGCTCGGCTGA.................. 25 0 20 0.05 1 0 0 0 1 0
...............................................................................................................TCTGTCTTACTAACAAGTGGCTCGG...................... 25 0 20 0.05 1 1 0 0 0 0
.........................................................................................................GCACTCTCTGTCTTACTAACAAGTGG........................... 26 0 20 0.05 1 1 0 0 0 0
................................................................................................TGTCGGAGTGCACTCTCTGTCTTACTG................................... 27 1 20 0.05 1 1 0 0 0 0
......................................................................................................................TACTAACAAGTGGCTCGGCTGAGCT............... 25 0 20 0.05 1 0 0 1 0 0
.........................................................................................................................TAACAAGTGGCTCGGCTGAGCTCAGT........... 26 1 20 0.05 1 1 0 0 0 0
..................................................................................AACGAACACGCAGGTGTCGGAGTGC................................................... 25 1 20 0.05 1 0 0 1 0 0
...............................................................................TGTAACGAACACGCGGGTGTCGGAG...................................................... 25 0 20 0.05 1 1 0 0 0 0
................................................GTTTGTGCCCCACGTTGGG........................................................................................... 19 2 20 0.05 1 1 0 0 0 0
................................................GTTCGTGCCCCACGTTCGG........................................................................................... 19 2 20 0.05 1 0 0 1 0 0
................................................................................GTAACGAACACGCGGGTGTCGGAGTG.................................................... 26 0 20 0.05 1 1 0 0 0 0
................................................GTTCGTGCCCCACGTTGGA........................................................................................... 19 2 20 0.05 1 0 0 1 0 0
..................................................................................AACGAACGCGCGGGTGTCGGAGTGC................................................... 25 1 20 0.05 1 0 0 1 0 0
......................................................................................................................TACTAACAAGTGGCTCGGCTGAGCTCAG............ 28 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................TAACAAGTGGCCCGGCTGAGCTCAGGG.......... 27 1 20 0.05 1 1 0 0 0 0
.......................................................................................................................ACTAACAAGTGGCTCGGCTGAGCTCA............. 26 0 20 0.05 1 1 0 0 0 0
.........................................................................................................GCACTCTCTGTCTTACTAACAAGTGGC.......................... 27 0 20 0.05 1 1 0 0 0 0
.....................................................TGCCCCACGCTGGGCGCCA...................................................................................... 19 1 20 0.05 1 1 0 0 0 0
.................................................................................................................TGTCTTACTAACAAGTGGCTCG....................... 22 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TCATTTCCTCACCTAATCTCTGTGCATCCCGTTTTTTTTAGGAACGAAGAAGCACGGGGTGCAACCCGCGGTAAATAATACATTGCTTGTGCGCCCACAGCCTCACGTGAGAGACAGAATGATTGTTCACCGAGCCGACTCGAGTCCCTTTTACCCCC
************************************........(((..(((((.(((((.((.((..((.(((.....)))...))..)))).))).))))))).)))..............*********************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
..................................................................................................AGCCTCACGTGAGAGACAGAATGAT................................... 25 0 20 0.25 5 3 2
.........................................................................................................CGTGAGAGACAGAATGATTGTTC.............................. 23 0 20 0.15 3 2 1
.....................................................................................CTTGTGCGCCCACAGCCTCACGT.................................................. 23 0 20 0.10 2 2 0
...................................................................................TGCTTGTGCGCCCACAGCCTCA..................................................... 22 0 20 0.10 2 2 0
............................................................................................................GAGAGACAGAATGATTGTTCACC........................... 23 0 20 0.10 2 2 0
.................................................................................................................ACAGAATGATTGTTCACCGAGCCGACT.................. 27 0 20 0.10 2 0 2
..............................................................................................CCACAGCCTCACGTGAGAGACAGAATG..................................... 27 0 20 0.10 2 1 1
...................................................................................................GCCTCACGTGAGAGACAGAATGAT................................... 24 0 20 0.10 2 2 0
............................................................................................................GAGAGACAGAATGATTGTTCACCGAG........................ 26 0 20 0.05 1 0 1
............................................................................................GCCCACAGCCTCACGTGAGAGACAGAA....................................... 27 0 20 0.05 1 1 0
............................................................................................................GAGAGACAGAAGGATTGTTCACC........................... 23 1 20 0.05 1 1 0
.......................................................................................................CACGTGAGAGACAGAATGATTGTT............................... 24 0 20 0.05 1 1 0
.............................................................................................TTTACAGCCTCACGTGAGAGACAGAAT...................................... 27 3 20 0.05 1 0 1
............................................................................................GCCCACAGCCTCACGTGAGAGA............................................ 22 0 20 0.05 1 1 0
..............................................................................................................................TCACCGAGCCGACTCGAGTCCCTTT....... 25 0 20 0.05 1 1 0
...........................................................................................................TGAGAGACAGAATGATTGTTCACC........................... 24 0 20 0.05 1 1 0
....................................................................................GCTTGTGCGCCCACAGCCTCAC.................................................... 22 0 20 0.05 1 1 0
...................................................................................TGCTTGTGCGCCCACAGCCTCACGT.................................................. 25 0 20 0.05 1 1 0
..............................................................................................................................TCACCGAGCCGACTCGAGTCCCTTTT...... 26 0 20 0.05 1 1 0
....................................................................................................CCTCACGTGAGAGACAGAATGAT................................... 23 0 20 0.05 1 1 0
...................................................................................................................................GAGCCGACTCGAGTCCCT......... 18 0 20 0.05 1 1 0
.........................................................................................................CGTGAGAGACAGAATGATTGT................................ 21 0 20 0.05 1 0 1
.............................................................................................................AGAGACAGAATGATTGTTCACC........................... 22 0 20 0.05 1 1 0
.....................................................................................................CTCACGTGAGAGACAGAATGAT................................... 22 0 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000001556:4074-4231 - dwi_156 AGTAAAGGA---------GTGGATTAGA-----------------------G------ACACGTAGGGCAAAAA------AAAT--------C-CT----------------TG-------CT----TCT-TCGTGCCCCACG-TTGGGCGCCATTTA-TT-ATGTAACGAACACGCGGGT--------------GTC------------G---GAGTGCACTCTCTGTCTTA---------------CT--AACAAGTGG-CTCGGCTGAGCTCAGGGAAAATGGGGG
droVir3 scaffold_12958:1311043-1311154 - TGAC---------------------------------------------------------------------------------------------------------------------------TAT-TCGTGC-CTACA-TTGGGAGCCATTTG-TT-ATGTAACGAACACAAGTAA-GCTT------T-------------------AC-AGAGCACATTCTGTCTAA---------------AA--A----GGGG-TCCGGCCTAGCGCAGGGCAAGCGGATG
droGri2 scaffold_17438:11948-12141 + AGGAAATT----------CAGAGAGGTTATCTGGTTTGTGGGGGATTTTGAGAAGGCTATATGTAGTTGGAGAA------GTAG--------C-CG----------------TACTAC--GTT----ATT-CTTAGCCCCACG-TTGGGCGCCATTTAATT-ATGTAACGAACACGTTGAT-GTGTGCAGCAAA------------------CTGGAGGCGTACTCTGCCTAC---------------AG----------G-GTCGACTGTGCTCAGGGAAAATGGGGC
dp5 Unknown_group_2:79429-79483 + AGCACGCCC----------A-----------------------------------------------------------------------------------------------------------------TGGC---------------------------------------------------------------------------------------CTTATTTAC--------------CAT---------AG-TTGAATTGAGCTCAGAAAACTTTAGCT
droPer2 scaffold_208:26038-26128 + TTGT----------------------------------------------------------------------------------------------------------------------T----GTA-TCGTGCCCCACG-TTGGGCGCCACTT-----TTGTAATGTGTCCCGGTGT--------------TCTGGTGTGGAAGCTTTC--GAGACGCATTCCACTAAC---------------AA----------G----------------------------
droAna3 scaffold_13770:717331-717460 + AATATCCT--------------------------------------------------------------------------------------------------------TA-------AA----GCG-TCGTGCCCCACG-TTGGGCGTCATA-A-TT-CTGTAACGGTGTGGCA--------------CATGTC------------C---TGAAGGTACTTCGATCTACTAACAATCTACTAACAG----------GCTCCAGCCGTGCTCAGGGAAAGTGGGAG
droBip1 scf7180000391849:5866-6033 + TAGAGGGA-----------TGGCT----GTTAGGGT------------------------ATGTTGGGTAAAAGTTCGGAAAAGCATGGTTGCATT----------------TT-------CA----TTT-TCTCGCCCCCCC-TTGGGCGCCATTTA-TT-TTGTGACGAACTCGGTGAA-GTTTGATACCCA------------------CTGGTAGCATACTCTGCCTAC---------------GA----------G-TCCAGCCTAGCTCAGTAAAGA------
droKik1 scf7180000302841:287-467 - AGCAGGGTA---------CTGGAACCTA-----------------------A------ATACATTAAGCAATGT------ATAT--------A-TTTAAGTTTTCCATATGGTTTTACATTAAAACCTAA-TCGTGCATCACG-TTGGGCGCCAA--A-TT-CTGTAATGGACG-GTA-------T-------ATGTC------------CTTC-GAGGAACGCTCTGTCTAC---------------GAAAA----GGGG-TCCGGCCGTGCTCAGGGAAAATGG-CG
droFic1 scf7180000453447:1557-1707 - AGCTAGGGAGTCCAACGACTAGTACCTAATCAGGCT------------------------AC---------------------------------------------------------------------GCTGGCTTCACGATTGGGCGCCATTAA-TT-CTGTAACGAACACACACAC-AAGTGCTGCTCA------------------CTCCCAACACGCTCTGTCTAC---------------AT-------TTTG-CCCGGC-CTGCTCAGGGTAGGTGACGT
droEle1 scf7180000490116:4511-4621 - T----------------------------------------------------------------------------------------------------------------------------------TCTTGCCCCACG-TTAGGCGGCATAGA-AT-ATTTAACGAATACGCTCTT--TGTGAGGCTAA------------------CTGGCAGCGTACTCTGCCTAC---------------GC---------AG-TTCGGCTGTGGTTAAAGAAAATGGGTG
droRho1 scf7180000776969:9817-9933 - TGCT---------------------------------------------------------------------------------------------------------------------------TTT-GCTAGCCCCACG-TTGGGAGCCATTTA-TTACTGTGACGAACACGGTGAA-GTGG-ATACCGA------------------TTGGTTGCATACTCTGCCTAC---------------GG----------G-ATCGGCCTAGCTCAGGGATGAGGCCAG
droBia1 scf7180000302291:932095-932248 + AATTAACT----------CTGGTATCTTCTCAGGAT------------------------AC--------------------------------GG----------------TATTTC--TGATTTCC---GATCGCCCCACG-TTGGGCGCCAAAGA-AT-ATGTAAGAAACACGGCAAT-GTGTGCGGCTAT------------------CGGGCAGCTTACTCAGCCTAC---------------AG----------G-GTCGGCTGTGCTCAGGGAAAATGGAAG
droTak1 scf7180000415052:2-122 + AAAACAGG-----------------------------------------------------------------------------------------------------------------TC----CTT-TCGTGCCCCACG-TTGGGCACCATTTA-GT-ATGTAACGAACACGACTGT-C--T---ATCTACGCC------------C---GAGAGTCTTTTCTGTCTAA---------------CT--A----ACTT-GCCGACTAGGTTCAGGGCT----GGGG
droEug1 scf7180000409778:15021-15043 - T----------------------------------------------------------------------------------------------------------------------------------TCGTGCTCCACG-TTGGGCGCCA---------------------------------------------------------------------------------------------------------------------------------------
dm3 chrUextra:1580084-1580195 - T--------------------------------------------------------------------------------------------------------------------------------------GTCCCACGTTTGGGCGCCAATTA-TAACTCTAACGAACACACTCATAGAGCGTTGTCCA------------------CC-CCAACACACTCTGTCTAC---------------TA--T----TTTT-ACCGGC-TTGCTCAGGGAAAATGGGCG
droSec2 scaffold_6752:1542-1637 - ----------------------------------------------------------------------------------------------------------------------------------------------------GCGCCATC-A-TA-TTGTAACGAACACACTCATAGTGCGTTGTCCA------------------CC-TCAACACACTCTGTCTAC---------------TA--T----TTTT-ACCGGC-ATGCTCAGGGAAAATGGGCG
droYak3 v2_chrUn_6631:124164-124281 - AGAAAT--------------------------------------------------------------------------------------------------------------------------CCTCGAAGCCCCACG-TTGGGCGCCAATTA-GT-ACGTAACGAACACGACAGC-T--T---ATCTACGCC------------C---GAGAGTCTTCTCTGTCTAA---------------CT--A----ACTT-GCCGGCTAGGTTCAGGGC---TGGGGT
droEre2 scaffold_4719:9941-10049 + T----------------------------------------------------------------------------------------------------------------------------------TCGAGCCCCACT-TTGTGCGCCAATTA-GT-ATGAAACGAACACGACTGT-T--T---ATCTACGCC------------C---GAGAGTCTTTTCTGTCTAA---------------TT--A----ACTT-GCCGACTAAGTTCAGGGCT----GGGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AGTAAAGGA---------GTGGATTAGA-----------------------G------ACACGTAGGGCAAAAA------AAAT--------C-CT----------------TG-------CT----TCT-TCGTGCCCCACG-TTGGGCGCCATTTA-TT-ATGTAACGAACACGCGGGT--------------GTC------------G---GAGTGCACTCTCTGTCTTA---------------CT--AACAAGTGG-CTCGGCTGAGCTCAGGGAAAATGGGGGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................................T-TCGTGCCCCACG-TTGGGCGCCA.......................................................................................................................................234336.00134401158868110
...................................................................................................................................TCGTGCCCCACG-TTGGGCGCCA.......................................................................................................................................226268.83161337127610130160
....................................................................................................................................CGTGCCCCACG-TTGGGCGCCA.......................................................................................................................................21659.6735863250819
.....................................................................................................................................GTGCCCCACG-TTGGGCGCCA.......................................................................................................................................201011.001101713530
.................................................................................................................................T-TCGTGCCCCACG-TTGGG............................................................................................................................................1859.2046144010
.................................................................................................................................T-TCGTGCCCCACG-TTGGGCG..........................................................................................................................................2045.0020020000
.........................................................................................................................................................................................................................................................T--AACAAGTGG-CTCGGCTGAGCTCA.............24203.30660100560
.................................................................................................................................T-TCGTGCCCCACG-TTGGGCGCC........................................................................................................................................2242.7511011000
...................................................................................................................................TCGTGCCCCACG-TTGGGCGCC........................................................................................................................................2162.5015015000
.........................................................................................................................................................................................................................................................T--AACAAGTGG-CTCGGCTGAGCTCAGGG..........27201.6533033000
................................................................................................................................CT-TCGTGCCCCACG-TTGGGCGCCA.......................................................................................................................................2441.50604011
.................................................................................................................................T-TCGTGCCCCACG-TTGGGCGCCG.......................................................................................................................................2341.50606000
......................................................................................................................................................................AACGAACACGCGGGT--------------GTC------------G---GAGTGC.....................................................................25201.2024010230
...................................................................................................................................TCGTGCCCCACG-TTGGGCGCCG.......................................................................................................................................2261.17725000
..................................................................................................................................................................................................................................TGTCTTA---------------CT--AACAAGTGG-CTCGGCT....................25201.0521020010
....................................................................................................................................CGTGCCCCACG-TTGGGCGCCG.......................................................................................................................................2161.00606000
.................................................................................................................................T-TCGTGCCCCACG-TTGGGCGCCT.......................................................................................................................................2341.00404000
......................................................................................................................................TGCCCCACG-TTGGGCGCCA.......................................................................................................................................19200.9519019000
....................................................................................................................................CGTGCCCCACG-TTGGGCGCC........................................................................................................................................2060.83505000
.................................................................................................................................T-TCGTGCCCCACG-TTGGGCGC.........................................................................................................................................2140.75303000
...................................................................................................................................TCGTGCCCCACG-TTGGGC...........................................................................................................................................1870.57440000
.................................................................................................................................T-TCGTGCCCCACG-TTGGGC...........................................................................................................................................1940.50202000
.......................................................................................................................................................................................................................................TA---------------CT--AACAAGTGG-CTCGGCTGAGCTC..............26200.45900180
.................................................................................................................................T-TCGTGCCCCACG-TTGGGCGCCC.......................................................................................................................................2350.40202000
.....................................................................................................................................GTGCCCCACG-TTGGGCGCCG.......................................................................................................................................20100.40404000
...................................................................................................................................TCGTGCCCCACG-TTGGGCGCCAC......................................................................................................................................2360.33202000
.......................................................................................................................................................................................................................................TA---------------CT--AACAAGTGG-CTCGGCTGAGCTCA.............27200.30600060
...................................................................................................................................TCGTGCCCCACG-TTGGGCG..........................................................................................................................................1970.29202000
..................................................................................................................................................................................................................................TGTCTTA---------------CT--AACAAGTGG-CTCGG......................23200.25503020
.................................................................................................................................T-TCGTGCCCCACG-TTGGGCGCCAG......................................................................................................................................2440.25101000
.................................................................................................................................T-TCGTGCCCCACG-TTGGGCGCCAC......................................................................................................................................2440.25101000
.........................................................................................................................CT----TCT-TCGTGCCCCACG-TTGGGCGCCA.......................................................................................................................................2740.25101000
......................................................................................................................................................................AACGAACACGCGGGT--------------GTC------------G---GAGTG......................................................................24200.20400040
....................................................................................................................................................................................................................................TCTTA---------------CT--AACAAGTGG-CTCGGCTGAGC................27200.20404000
..................................................................................................................................................................................................................................TGTCTTA---------------CT--AACAAGTGG-CTCGGCTGAG.................28200.20404000
........................................................................................................................................................................................................................................................................CGGCTGAGCTCAGGGAAAATGG...22200.20404000
.........................................................................A------AAAT--------C-CT----------------TG-------CT----TCT-TCGTGCCCCACG-T................................................................................................................................................2850.20100010
...................................................................................................................................TCGTGCCCCACG-TTGGGCGCCAG......................................................................................................................................2360.17101000
........................................................................................................................................................................................................................................................................CGGCTGAGCTCAGGGAAAATGGG..23200.15303000
..................................................................................................................................................................................................................................TGTCTTA---------------CT--AACAAGTGG-CTCGGCTG...................26200.15300030
..............................................................................................................................................................................................................................TCTCTGTCTTA---------------CT--AACAAGTGG-CTCG.......................26200.15303000
................................................................................................................................................................................................................................TCTGTCTTA---------------CT--AACAAGTGG-CTCGGC.....................26200.15303000
.....................................................................................................................................................................TAACGAACACGCGGGT--------------GTC------------G---GAGTG......................................................................25200.15303000
...................................................................................................................................TCGTGCCCCACG-TTGGGCGC.........................................................................................................................................2070.14101000
......................................................................................................................................................................AACGAACACGCGGGT--------------GTC------------G---GAGTGCAC...................................................................27200.10202000
.............................................................................................................................................................................................................................................................ACAAGTGG-CTCGGCTGAGCTCAGG...........24200.10202000
.........................................................................................................................................................................................................................................................T--AACAAGTGG-CTCGGCTGAG.................20200.10201100
.....................................................................................................................................GTGCCCCACG-TTGGGCGCC........................................................................................................................................19100.10101000
....................................................................................................................................................................................................TC------------G---GAGTGCACTCTCTGTCTTA---------------CT--AACA.................................28200.10202000
........................................................................................................................................CCCCACG-TTGGGCGCCAT......................................................................................................................................18140.07110000
..............................................................................................................................................................................................................................TCTCTGTCTTA---------------CT--AACAAGTGG-CTCGGCT....................29200.05101000
....................................................................................................................................................................................................................................TCTTA---------------CT--AACAAGTGG-CTCGGCTGAGCTC..............29200.05100010
........................................................................................................................................................................CGAACACGCGGGT--------------GTC------------G---GAGTGCAC...................................................................25200.05101000
..................................................................................................................................................................................................................................TGTCTTA---------------CT--AACAAGTGG-CTCGGCTGA..................27200.05100010
..............................................................................................................................................................................................................................TCTCTGTCTTA---------------CT--AACAAGTGG-CT.........................24200.05100010
...................................................................................................................................................................................................................................GTCTTA---------------CT--AACAAGTGG-CTCGGCT....................24200.05101000
.......................................................................................................................................................................................................................AGTGCACTCTCTGTCTTA---------------CT--AACAAG...............................26200.05101000
..............................................................................................................................................................................................................................TCTCTGTCTTA---------------CT--AACAAGTGG-CTCGG......................27200.05100100
.........................................................................................................................................................................................................................................................T--AACAAGTGG-CTCGGCTGAGCA...............22200.05100010
.........................................................................................................................................................................................................................................................T--AACAAGTGG-CTCGGCTGAGCTCT.............24200.05100010
..................................................................................................................................................................................................................G---GAGTGCACTCTCTGTCTTA---------------C........................................21200.05101000
.........................................................................................................................................................................GAACACGCGGGT--------------GTC------------G---GAGTGCACTT.................................................................26200.05101000
.............................................................................................................................................................................ACGCGGGT--------------GTC------------G---GAGTGCACTCTCTGT............................................................27200.05100100
.........................................................................................................................................................................................................................TGCACTCTCTGTCTTA---------------CT--AACAAG...............................24200.05101000
.....................................................................................................................................................................................................C------------G---GAGTGCACTCTCTGTCTTA---------------CT--AACAAG...............................29200.05101000
....................................................................................................................................................................................................TC------------G---GAGTGCACTCTCTGTCTTA---------------C........................................23200.05101000
...................................................................................................................................................................................................................................GTCTTA---------------CT--AACAAGTGG-CTCGG......................22200.05101000
................................................................................................................................................................................................................................TCTGTCTTA---------------CT--AACAAGTGG-CTCGGCT....................27200.05101000
........................................................................................................................................................................CGAACACGCGGGT--------------GTC------------G---GAGTGCACT..................................................................26200.05100010
..................................................................................................................................................................................................................................................................TGG-CTCGGCTGAGCTCAGGGAAAATG....26200.05101000
....................................................................................................................................................................................................................................TCTTA---------------CT--AACAAGTGG-CTCGGCTGA..................25200.05100100
................................................................................................................................................................................................................................TCTGTCTTA---------------CT--AACAAGTGG-CTCGG......................25200.05101000
..........................................................................................................................................................................................................................GCACTCTCTGTCTTA---------------CT--AACAAGTGG-...........................26200.05101000
....................................................................................................................................................................................T--------------GTC------------G---GAGTGCACTCTCTGTCTTA---------------CT--G....................................27200.05101000
.......................................................................................................................................................................................................................................TA---------------CT--AACAAGTGG-CTCGGCTGAGCT...............25200.05100010
.........................................................................................................................................................................................................................................................T--AACAAGTGG-CTCGGCTGAGCTCAGT...........26200.05101000
...................................................................................................................................................................TGTAACGAACACGCGGGT--------------GTC------------G---GAG........................................................................25200.05101000
....................................................................................................................................................................GTAACGAACACGCGGGT--------------GTC------------G---GAGTG......................................................................26200.05101000
.......................................................................................................................................................................................................................................TA---------------CT--AACAAGTGG-CTCGGCTGAGCTCAG............28200.05101000
........................................................................................................................................................................................................................................A---------------CT--AACAAGTGG-CTCGGCTGAGCTCA.............26200.05101000
..........................................................................................................................................................................................................................GCACTCTCTGTCTTA---------------CT--AACAAGTGG-C..........................27200.05101000
..................................................................................................................................................................................................................................TGTCTTA---------------CT--AACAAGTGG-CTCG.......................22200.05101000
droVir3
TGAC---------------------------------------------------------------------------------------------------------------------------TAT-TCGTGC-CTACA-TTGGGAGCCATTTG-TT-ATGTAACGAACACAAGTAA-GCTT------T-------------------AC-AGAGCACATTCTGTCTAA---------------AA--A----GGGG-TCCGGCCTAGCGCAGGGCAAGCGGATGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droGri2
AGGAAATT----------CAGAGAGGTTATCTGGTTTGTGGGGGATTTTGAGAAGGCTATATGTAGTTGGAGAA------GTAG--------C-CG----------------TACTAC--GTT----ATT-CTTAGCCCCACG-TTGGGCGCCATTTAATT-ATGTAACGAACACGTTGAT-GTGTGCAGCAAA------------------CTGGAGGCGTACTCTGCCTAC---------------AG----------G-GTCGACTGTGCTCAGGGAAAATGGGGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................AGCCCCACG-TTGGGCGCCG.......................................................................................................................................19160.06110
......................................................................................................................................AGCCCCACG-TTGGGCGCCA.......................................................................................................................................19160.06110
.......................................................................................................................................GCCCCACG-TTGGGCGCCATT.....................................................................................................................................20200.05110
........................................................................................................................................CCCCACG-TTGGGCGCCATTT....................................................................................................................................20200.05110
dp5
AGCACGCCC----------A-----------------------------------------------------------------------------------------------------------------TGGC---------------------------------------------------------------------------------------CTTATTTAC--------------CAT---------AG-TTGAATTGAGCTCAGAAAACTTTAGCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TTGT----------------------------------------------------------------------------------------------------------------------T----GTA-TCGTGCCCCACG-TTGGGCGCCACTT-----TTGTAATGTGTCCCGGTGT--------------TCTGGTGTGGAAGCTTTC--GAGACGCATTCCACTAAC---------------AA----------G----------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................TCGTGCCCCACG-TTGGGCGCCA.......................................................................................................................................22656.503391249077120
....................................................................................................................................CGTGCCCCACG-TTGGGCGCCA.......................................................................................................................................211010.1010103006191
.....................................................................................................................................GTGCCCCACG-TTGGGCGCCA.......................................................................................................................................20141.2117160316
...................................................................................................................................TCGTGCCCCACG-TTGGGC...........................................................................................................................................1870.433300000
...................................................................................................................................TCGTGCCCCACG-TTGGGCGCCC.......................................................................................................................................2260.332010100
...................................................................................................................................TCGTGCCCCACG-TTGGGCGCCT.......................................................................................................................................2260.332020000
...................................................................................................................................TCGTGCCCCACG-TTGGGCGC.........................................................................................................................................2060.171010000
...................................................................................................................................TCGTGCCCCACG-TTGGGCGCC........................................................................................................................................2160.171010000
......................................................................................................................................TGCCCCACG-TTGGGCGCCA.......................................................................................................................................19200.153030000
............................................................................................................................................................T-----TTGTAATGTGTCCCGGTGT--------------TCTGG.........................................................................................2580.131010000
....................................................................................................................................CGTGCCCCACG-TTGGGCG..........................................................................................................................................18100.101010000
....................................................................................................................................CGTGCCCCACG-TTGGGCGCCT.......................................................................................................................................21100.101010000
droAna3
AATATCCT--------------------------------------------------------------------------------------------------------TA-------AA----GCG-TCGTGCCCCACG-TTGGGCGTCATA-A-TT-CTGTAACGGTGTGGCA--------------CATGTC------------C---TGAAGGTACTTCGATCTACTAACAATCTACTAACAG----------GCTCCAGCCGTGCTCAGGGAAAGTGGGAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................TT-CTGTAACGGTGTGGCA--------------CATGTC------------C---...........................................................................2511.001100000
.........................................................................................................................................................ATA-A-TT-CTGTAACGGTGTGGCA--------------CA...............................................................................................2411.001100000
...................................................................................................................................TCGTGCCCCACG-TTGGGCG..........................................................................................................................................1921.002200000
...................................................................................................................................TCGTGCCCCACG-TTGGGCGTCA.......................................................................................................................................2211.001100000
..................................................................................................................................................................CTGTAACGGTGTGGCA--------------CATGTC------------C---TGAA.......................................................................2711.001100000
.....CCT--------------------------------------------------------------------------------------------------------TA-------AA----GCG-TCGTGCCCCACG-TTGGG............................................................................................................................................2711.001100000
.................................................................................................................................................................................................................................................TACTAACAG----------GCTCCAGCCGTGCTCAGG...........27200.75151410000
......................................................................................................................................................................................................................................................................TCCAGCCGTGCTCAGGGAAAGTGG...24200.408800000
....................................................................................................................................................................................................TC------------C---TGAAGGTACTTCGATCTACTAACA...................................................27200.255500000
..................................................................................................................................................................................................TGTC------------C---TGAAGGTACTTCGATCTACTAACA...................................................29200.255500000
..................................................................................................................................................................................................TGTC------------C---TGAAGGTACTTCGATCTACTAAC....................................................28200.204400000
................................................................................................................................................................................................CATGTC------------C---TGAAGGTACTTCGATCTAC........................................................26200.204400000
.................................................................................................................................................................................................................................................TACTAACAG----------GCTCCAGCCGTGCTCAGGG..........28200.153300000
.................................................................................................................................................................................................ATGTC------------C---TGAAGGTACTTCGATCTAC........................................................25200.153300000
..............................................................................................................................................................................................................................................................................TGCTCAGGGAAAGTGGGAG19200.153201000
..................................................................................................................................................................................................TGTC------------C---TGAAGGTACTTCGATC...........................................................21200.153300000
..........................................................................................................................................................................................................................................................................GCCGTGCTCAGGGAAAGTGGGAG23200.153300000
..................................................................................................................................................................................................TGTC------------C---TGAAGGTACTTCGATCTACTAA.....................................................27200.153300000
......................................................................................................................................................................................................................................................................TCCAGCCGTGCTCAGGGAAAGT.....22200.102100010
............................................................................................................................................................................................................................................................................CGTGCTCAGGGAAAGTGGGAG21200.102200000
......................................................................................................................................................................................................................................................................TCCAGCCGTGCTCAGGGAAAGTGGG..25200.102200000
..............................................................................................................................................................................GGCA--------------CATGTC------------C---TGAAGGTACTTCGATC...........................................................27200.102200000
......................................................................................................................................................................................................................................................................TCCAGCCGTGCTCAGGGAAAGTGGGA.26200.102100010
................................................................................................................................................................................CA--------------CATGTC------------C---TGAAGGTACTTCGATCTAC........................................................28200.102200000
.................................................................................................................................................................................................ATGTC------------C---TGAAGGTACTTCG..............................................................19200.051100000
................................................................................................................................................................................................................................................CTACTAACAG----------GCTCCAGCCGT..................21200.051010000
....................................................................................................................................CGTGCCCCACG-TTGGGCG..........................................................................................................................................18200.051000001
.......................................................................................................................................................................................................................................................CAG----------GCTCCAGCCGTGCTCAGGGAAAG......26200.051100000
....................................................................................................................................................................................................................................................................GCTCCAGCCGTGCTCAGGGAAAG......23200.051100000
..............................................................................................................................................................................................................................................ATCTACTAACAG----------GCTCCAGCCGTGC................25200.051100000
.................................................................................................................................................................................................ATGTC------------C---TGAAGGTACTTCGATCTACTA......................................................27200.051100000
.............................................................................................................................................................................TGGCA--------------CATGTC------------C---TGAAGGTAC..................................................................21200.051100000
.....................................................................................................................................................................................................................................................AACAG----------GCTCCAGCCGTGCTCAGGG..........24200.051100000
..............................................................................................................................................................................GGCA--------------CATGTC------------C---TGAAGGTACT.................................................................21200.051100000
.................................................................................................................................................................................................................................................TACTAACAG----------GCTCCAGCCGTG.................21200.051100000
.....................................................................................................................................................................................................................................................................CTCCAGCCGTGCTCAGGGAAAGT.....23200.051100000
.....................................................................................................................................................................................................................................................................CTCCAGCCGTGCTCAGGGAAAGTGAA..26200.051100000
..............................................................................................................................................................................................................................................ATCTACTAACAG----------GCTCCAGCC....................21200.051100000
.............................................................................................................................................................................TGGCA--------------CATGTC------------C---TGAAGGTACTTCG..............................................................25200.051100000
................................................................................................................................................................................CA--------------CATGTC------------C---TGAAGGTACTTC...............................................................21200.051100000
.................................................................................................................................................................................A--------------CATGTC------------C---TGAAGGTACTTCGA.............................................................22200.051100000
.........................................................................................................................................................................................................................................................G----------GCTCCAGCCGTGCTCAGG...........19200.051100000
........................................................................................................................................................................................................................................................................CAGCCGTGCTCAGGGAAAGTGGG..23200.051000010
.................................................................................................................................................................................................................................................TACTAACAG----------GCTCCAGCCGTGCTCA.............25200.051100000
.............................................................................................................................................................................TGGCA--------------CATGTC------------C---TGAAGGTACTTCGATC...........................................................28200.051010000
.............................................................................................................................................................................TGGCA--------------CATGTC------------C---TGAAGGTACTTCGA.............................................................26200.051100000
....................................................................................................................................................................................................................................................TAACAG----------GCTCCAGCCGTGCTCAGGGA.........26200.051000010
...................................................................................................................................................................................................GTC------------C---TGAAGGTACTTCGATCTACTAA.....................................................26200.051100000
...................................................................................................................................................................................................................................................CTAACAG----------GCTCCAGCCGTGCTCAGGGA.........27200.051100000
.........................................................................................................................................................................................................................................................G----------GCTCCAGCCGTGCTCAGGGA.........21200.051100000
..................................................................................................................................................................................................................................................ACTAACAG----------GCTCCAGCCGTGC................21200.051100000
....................................................................................................................................................................................................................................................TAACAG----------GCTCCAGCCGTGCTCAGGG..........25200.051000010
..............................................................................................................................................................................................................................................ATCTACTAACAG----------GCTCCAGCCGT..................23200.051100000
..........................................................................................................................................................................................................................................................................GCCGTGCTCAGGGAAAGTGGG..21200.051100000
droBip1
TAGAGGGA-----------TGGCT----GTTAGGGT------------------------ATGTTGGGTAAAAGTTCGGAAAAGCATGGTTGCATT----------------TT-------CA----TTT-TCTCGCCCCCCC-TTGGGCGCCATTTA-TT-TTGTGACGAACTCGGTGAA-GTTTGATACCCA------------------CTGGTAGCATACTCTGCCTAC---------------GA----------G-TCCAGCCTAGCTCAGTAAAGA------SizeHit CountTotal NormTotal
No Reads
droKik1
AGCAGGGTA---------CTGGAACCTA-----------------------A------ATACATTAAGCAATGT------ATAT--------A-TTTAAGTTTTCCATATGGTTTTACATTAAAACCTAA-TCGTGCATCACG-TTGGGCGCCAA--A-TT-CTGTAATGGACG-GTA-------T-------ATGTC------------CTTC-GAGGAACGCTCTGTCTAC---------------GAAAA----GGGG-TCCGGCCGTGCTCAGGGAAAATGG-CGSizeHit CountTotal NormTotal
No Reads
droFic1
AGCTAGGGAGTCCAACGACTAGTACCTAATCAGGCT------------------------AC---------------------------------------------------------------------GCTGGCTTCACGATTGGGCGCCATTAA-TT-CTGTAACGAACACACACAC-AAGTGCTGCTCA------------------CTCCCAACACGCTCTGTCTAC---------------AT-------TTTG-CCCGGC-CTGCTCAGGGTAGGTGACGTSizeHit CountTotal NormTotal
No Reads
droEle1
T----------------------------------------------------------------------------------------------------------------------------------TCTTGCCCCACG-TTAGGCGGCATAGA-AT-ATTTAACGAATACGCTCTT--TGTGAGGCTAA------------------CTGGCAGCGTACTCTGCCTAC---------------GC---------AG-TTCGGCTGTGGTTAAAGAAAATGGGTGSizeHit CountTotal NormTotal
No Reads
droRho1
TGCT---------------------------------------------------------------------------------------------------------------------------TTT-GCTAGCCCCACG-TTGGGAGCCATTTA-TTACTGTGACGAACACGGTGAA-GTGG-ATACCGA------------------TTGGTTGCATACTCTGCCTAC---------------GG----------G-ATCGGCCTAGCTCAGGGATGAGGCCAGSizeHit CountTotal NormTotal
No Reads
droBia1
AATTAACT----------CTGGTATCTTCTCAGGAT------------------------AC--------------------------------GG----------------TATTTC--TGATTTCC---GATCGCCCCACG-TTGGGCGCCAAAGA-AT-ATGTAAGAAACACGGCAAT-GTGTGCGGCTAT------------------CGGGCAGCTTACTCAGCCTAC---------------AG----------G-GTCGGCTGTGCTCAGGGAAAATGGAAGSizeHit CountTotal NormTotal
No Reads
droTak1
AAAACAGG-----------------------------------------------------------------------------------------------------------------TC----CTT-TCGTGCCCCACG-TTGGGCACCATTTA-GT-ATGTAACGAACACGACTGT-C--T---ATCTACGCC------------C---GAGAGTCTTTTCTGTCTAA---------------CT--A----ACTT-GCCGACTAGGTTCAGGGCT----GGGGSizeHit CountTotal NormTotal
No Reads
droEug1
T----------------------------------------------------------------------------------------------------------------------------------TCGTGCTCCACG-TTGGGCGCCA---------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
T--------------------------------------------------------------------------------------------------------------------------------------GTCCCACGTTTGGGCGCCAATTA-TAACTCTAACGAACACACTCATAGAGCGTTGTCCA------------------CC-CCAACACACTCTGTCTAC---------------TA--T----TTTT-ACCGGC-TTGCTCAGGGAAAATGGGCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................AACGAACACACTCATAGAGCG......................................................................................................21203.4569000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000030000000000000000000000000000000000000000000000000020000530000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TAACGAACACACTCATAGAGCGTT....................................................................................................24202.7054000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001400020300000000000000000000000000000000002000004000000000000050000001500000003000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000
.................................................................................................................................................................................TCATAGAGCGTTGTCCA------------------CC-CCAACA....................................................................25201.903800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000002020000000000000000000003000002000010000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000070018000000
......................................................................................................................................................................AACGAACACACTCATAGAGC.......................................................................................................20201.903800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TCTAC---------------TA--T----TTTT-ACCGGC-TTGCTCA.............2581.75140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023031021000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000
....................................................................................................................................................................................................................................TCTAC---------------TA--T----TTTT-ACCGGC-TTGCTC..............2481.63130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032300011000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000101000000
.....................................................................................................................................................................................AGAGCGTTGTCCA------------------CC-CCAACA....................................................................21201.603200000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000002000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000006003130000000000000000050000000000000000000000000000000000
......................................................................................................................................................GCCAATTA-TAACTCTAACGAACACACT...............................................................................................................27191.472800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000011030800000000000000010102010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................TAGAGCGTTGTCCA------------------CC-CCAACACA..................................................................24201.30260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000500070000000010000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000106000000000000001020000000
..............................................................................................................................................................................................TCCA------------------CC-CCAACACACTCTGTCTAC---------------TA--T----................................27201.25250000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006500000000000000000000000390000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................CCCACGTTTGGGCGCCAATTA-TAACTC............................................................................................................................27201.15230000000000000000000000000000000000000000000000000010000000000000000000000000000000203000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100000000000000000000000000020601320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
......................................................................................................................................................................AACGAACACACTCATAGAGCGTTGT..................................................................................................25201.15230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000100009400000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000
....................................................................................................................................................................................................................................TCTAC---------------TA--T----TTTT-ACCGGC-TTGCTCAG............2681.1390000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000621000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................TCTAACGAACACACTCATAGAGCGTT....................................................................................................26201.05210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000101100000000000000000000000000000000000000010000000020000000000000000000010401100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000002112000000
............................................................................................................................................................................CACACTCATAGAGCGTTGTCCA------------------CC-CC........................................................................26201.00200000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000908000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................ACTCATAGAGCGTTGTCCA------------------CC-..........................................................................21201.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000190000000000000000000000000000000000000000000000000000
........................................................................................................................................................................CGAACACACTCATAGAGCGTT....................................................................................................21200.90180000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000350000000000000000700000000000000000000000000000000000
.......................................................................................................................................................CCAATTA-TAACTCTAACGAACACACT...............................................................................................................26190.89170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000019100000000000000020020110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TCTAC---------------TA--T----TTTT-ACCGGC-TTGCTCAGG...........2780.8870000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000302020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TCATAGAGCGTTGTCCA------------------CC-CCAACACAC.................................................................28200.851700000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TCCA------------------CC-CCAACACACTCTGTCTAC---------------.........................................24200.85170000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000018000000000000000000000130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................TAGAGCGTTGTCCA------------------CC-CCAACA....................................................................22200.80160000000000000000000000000000000000001000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010080000000000000000000000000000000000000000000000000000000000002001000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...........................................................................................................................................CACGTTTGGGCGCCAATTA-TA................................................................................................................................21200.751500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000
............................................................................................................................................................TA-TAACTCTAACGAACACACTCATA...........................................................................................................25190.74140000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020323120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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................................................................................................................................................................................CTCATAGAGCGTTGTCCA------------------CC-CCAACA....................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................C-TTGCTCAGGGAAAATGG...18110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................TTGCTCAGGGAAAATGGG..18110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................A-TAACTCTAACGAACACACTCATAG..........................................................................................................25190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................ATTA-TAACTCTAACGAACACACT...............................................................................................................23190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TTA-TAACTCTAACGAACACAC................................................................................................................21190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................ATTA-TAACTCTAACGAACACA.................................................................................................................21190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................ATTA-TAACTCTAACGAACACACTCATA...........................................................................................................27190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................CCAATTA-TAACTCTAACGAACACA.................................................................................................................24190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................AACTCTAACGAACACACTCATAGA.........................................................................................................24190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................ACTCTAACGAACACACTCATAGAGC.......................................................................................................25190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TAACTCTAACGAACACACTCATA...........................................................................................................23190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................CCAATTA-TAACTCTAACGAACACAT................................................................................................................25190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................AACTCTAACGAACACACTCAT............................................................................................................21190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................ACTCTAACGAACACACTCATAGAGCGT.....................................................................................................27190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................CTCTAACGAACACACTCATAGAGC.......................................................................................................24190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................A-TAACTCTAACGAACACACTC..............................................................................................................21190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.............................................................................................................................................................A-TAACTCTAACGAACACACT...............................................................................................................20190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TAACTCTAACGAACACACTCATAG..........................................................................................................24190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................TTA-TAACTCTAACGAACACACTCATAG..........................................................................................................27190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................TA-TAACTCTAACGAACACACTCATAG..........................................................................................................26190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................A-TAACTCTAACGAACACACTCA.............................................................................................................22190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSec2
----------------------------------------------------------------------------------------------------------------------------------------------------GCGCCATC-A-TA-TTGTAACGAACACACTCATAGTGCGTTGTCCA------------------CC-TCAACACACTCTGTCTAC---------------TA--T----TTTT-ACCGGC-ATGCTCAGGGAAAATGGGCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................CGTTGTCCA------------------CC-TCAACACACTCTGTC...........................................................2640.5022000
....................................................................................................................................................................................................................................TCTAC---------------TA--T----TTTT-ACCGGC-ATGCTCA.............25170.4174111
............................................................................................................................................................................................TGTCCA------------------CC-TCAACACACTCTGTCTAC---------------.........................................2640.2510010
............................................................................................................................................................................................TGTCCA------------------CC-TCAACACACTCTG.............................................................2140.2511000
..............................................................................................................................................................................................TCCA------------------CC-TCAACACACTCTGTCTAC---------------TA--T----................................2740.2511000
............................................................................................................................................................................................TGTCCA------------------CC-TCAACACACTCTGTCTAC---------------TA--T----................................2940.2511000
...............................................................................................................................................................................................CCA------------------CC-TCAACACACTCTGTCTAC---------------TA--T----................................2640.2511000
................................................................................................................................................................................................CA------------------CC-TCAACACACTCTGTCTAC---------------TA--T----................................2540.2511000
.............................................................................................................................................................................................GTCCA------------------CC-TCAACACACTCTGTCTAC---------------TA--.....................................2740.2511000
...........................................................................................................................................................................................TTGTCCA------------------CC-TCAACACACTCTGTC...........................................................2440.2510010
....................................................................................................................................................................................................................................TCTAC---------------TA--T----TTTT-ACCGGC-ATGCTC..............24170.2443100
.........................................................................................................................................................................................................................................................A--T----TTTT-ACCGGC-ATGCTCAGG...........21170.1833000
....................................................................................................................................................................................................................................................................T-ACCGGC-ATGCTCAGGGAAAATGGG..25120.1720020
.....................................................................................................................................................................................................................................CTAC---------------TA--T----TTTT-ACCGGC-ATGCTC..............23170.1222000
....................................................................................................................................................................................................................................TCTAC---------------TA--T----TTTT-ACCGGC-ATGCTCAG............26170.1222000
...................................................................................................................................................................................................................................................................TT-ACCGGC-ATGCTCAGGGAAAATGGG..26120.0811000
.....................................................................................................................................................................................................................................CTAC---------------TA--T----TTTT-ACCGGC-ATGC................21170.0611000
....................................................................................................................................................................................................................................TCTAC---------------TA--T----TTTT-ACCGGC-ATGCTCAGG...........27170.0611000
....................................................................................................................................................................................................................................TCTAC---------------TA--T----TTTT-ACCGGC-ATGC................22170.0611000
....................................................................................................................................................................................................................................TCTAC---------------TA--T----TTTT-ACCGGC-ATGCT...............23170.0610100
.......................................................................................................................................................................................................................................................................CCGGC-ATGCTCAGGGAAAATGG...22170.0611000
....................................................................................................................................................................................................................................TCTAC---------------TA--T----TTTT-ACCGGC-ATG.................21170.0611000
........................................................................................................................................................................................................................................................TA--T----TTTT-ACCGGC-ATGCTCAGG...........22170.0611000
....................................................................................................................................................................................................................................TCTAC---------------TA--T----TTTT-ACCGGC-ATGCTCAGGG..........28170.0611000
.........................................................................................................................................................................................................................AACACACTCTGTCTAC---------------TA--T----TT..............................21180.0611000
........................................................................................................................................................................................................................CAACACACTCTGTCTAC---------------TA--T----T...............................21180.0611000
droYak3
AGAAAT--------------------------------------------------------------------------------------------------------------------------CCTCGAAGCCCCACG-TTGGGCGCCAATTA-GT-ACGTAACGAACACGACAGC-T--T---ATCTACGCC------------C---GAGAGTCTTCTCTGTCTAA---------------CT--A----ACTT-GCCGGCTAGGTTCAGGGC---TGGGGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................CCCCACG-TTGGGCGCCC.......................................................................................................................................17200.5511000000000011
...........................................................................................................................................................................................................................TCTTCTCTGTCTAA---------------CT--A----ACTT-GCCGGC.....................2750.20101000000000
....................................................................................................................................................................................................................................TCTAA---------------CT--A----ACTT-GCCGGCTAGGTTC..............2580.13101000000000
......................................................................................................................................AGCCCCACG-TTGGGCGCCG.......................................................................................................................................19200.05101000000000
droEre2
T----------------------------------------------------------------------------------------------------------------------------------TCGAGCCCCACT-TTGTGCGCCAATTA-GT-ATGAAACGAACACGACTGT-T--T---ATCTACGCC------------C---GAGAGTCTTTTCTGTCTAA---------------TT--A----ACTT-GCCGACTAAGTTCAGGGCT----GGGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
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Generated: 05/15/2015 at 02:54 PM