dwi_1541

CDS [Dwil\GK18193-cds]; exon [dwil_GLEANR_18548:6]; CDS [Dwil\GK18193-cds]; exon [dwil_GLEANR_18548:7]; intron [Dwil\GK18193-in]

##################################################--------------------------------------------------------------------################################################## ATTGGGCCACAACGGTGCCGGAAAGACAACCATGATGAACATGATAATGGGTAAACAAAAAGAAACGGGAGAGAAAGTGTGCGAGAGAATTAATTGACATTTGTTTACCATTCAATAGGTCTTGTGCCCAAGGACTCGGGTAAAATAGTTGTCTGCAGTGAACGTGAT ************************************************.................((.(((.((((((.(((.........))))))))).))).)).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V117 male body	M020 head	V118 embryo	V119 head
......................................................................................................................GTCTTGTGCCCAAGGACTCGG.............................	21	0	1	12.00	12	12	0	0	0	0
...........................................................................................................................................GTAAAATAGTTGTCTGCAGTG........	21	0	1	10.00	10	10	0	0	0	0
.......................................................................................................................TCTTGTGCCCAAGGACTCGGG............................	21	0	1	7.00	7	7	0	0	0	0
.................................................................................................................................................TAGTTGTCTGCAGTGAACGTG..	21	0	1	5.00	5	3	2	0	0	0
................................................................................................................................................ATAGTTGTCTGCAGTGAACGT...	21	0	1	5.00	5	1	4	0	0	0
...............................................................................................................................................AATAGTTGTCTGCAGTGAACG....	21	0	1	4.00	4	3	1	0	0	0
.........CAACGGTGCCGGAAAGACAAC..........................................................................................................................................	21	0	1	4.00	4	2	2	0	0	0
..............................................................................................................................................AAATAGTTGTCTGCAGTGAAC.....	21	0	1	4.00	4	0	0	4	0	0
.........................................................................AAAGTGTGCGAGAGAATTAAT..........................................................................	21	0	1	4.00	4	1	3	0	0	0
..................................................GTAAACAAAAAGAAACGGGAG.................................................................................................	21	0	1	3.00	3	1	2	0	0	0
..................................................................................................................ATGGGTCTTGTGCCCAAGGAC.................................	21	1	1	2.00	2	0	0	2	0	0
.......................................................................................................................................TCGGGTAAAATAGTTGTCTGC............	21	0	1	2.00	2	1	1	0	0	0
.....................................................................................................................GGTCTTGTGCCCAAGGACTCGG.............................	22	0	1	2.00	2	2	0	0	0	0
...................................................................................................................TAGGTCTTGTGCCCAAGGACT................................	21	0	1	2.00	2	2	0	0	0	0
...........................................................AAGAAACGGGAGAGAAAGTGT........................................................................................	21	0	1	2.00	2	0	2	0	0	0
.................................GATGAACATGATAATGGGTAA..................................................................................................................	21	0	1	2.00	2	1	1	0	0	0
......................................................................................................................................CTCGGGTAAAGTGGTTGTCTG.............	21	2	1	2.00	2	2	0	0	0	0
............................................................................................................................................TAAAATAGTTGTCTGCAGTGA.......	21	0	1	2.00	2	2	0	0	0	0
.....................AAAGACAACCATGATGAACA...............................................................................................................................	20	0	1	2.00	2	2	0	0	0	0
....................GAAAGACAACCATGATGAACA...............................................................................................................................	21	0	1	2.00	2	2	0	0	0	0
.............................................................GAAACGGGAGAGAAAGTGTGC......................................................................................	21	0	1	2.00	2	0	2	0	0	0
........................................................................................................................CTTGTGCCCAAGGACTCGGGT...........................	21	0	1	2.00	2	1	0	1	0	0
............................................................................................................................................TAAAATAGTTGTCTGCAGTG........	20	0	1	2.00	2	2	0	0	0	0
..........................................................................................................................TGTGCCCAAGGACTCGGGTA..........................	20	0	1	2.00	2	2	0	0	0	0
.....................................................................................................................GGTCTTGTGCCCAAGGACTC...............................	20	0	1	2.00	2	2	0	0	0	0
..........................................................................................................................TGTGCCCAAGGACTCGGGTAA.........................	21	0	1	2.00	2	2	0	0	0	0
.......................................................................................................................................TCGGGTAAAATAGTTGTCTG.............	20	0	1	1.00	1	1	0	0	0	0
.............................................................................................................................................AAAATAGTTGTCTGCAGTGAA......	21	0	1	1.00	1	1	0	0	0	0
.........................................................................................................................TTGTGCCCAAGGACTCGGGT...........................	20	0	1	1.00	1	1	0	0	0	0
.......................................................................................................................TCTTGTCCCCAAGGACTCGG.............................	20	1	1	1.00	1	1	0	0	0	0
.......................................................CAAAAAGAAACGGGAGAGAA.............................................................................................	20	0	1	1.00	1	0	1	0	0	0
............CGGTGCCGGAAAGACAACCATGATG...................................................................................................................................	25	0	1	1.00	1	0	0	0	1	0
..........AACGGTGCCGGAAAGACAAC..........................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0
..........................................................AAAGAAACGGGAGAGAGAGTGT........................................................................................	22	1	1	1.00	1	0	1	0	0	0
..................................................................................................................ATAGGTCTTGTGCCCAAGG...................................	19	0	1	1.00	1	1	0	0	0	0
...................................................................................................................................GGACTCGGGTAGGATAGTTGT................	21	2	1	1.00	1	1	0	0	0	0
................................................................................................................................CAAGGACTCGGGTAAAATAGTTGT................	24	0	1	1.00	1	0	1	0	0	0
................................................................................................................................................ATAGTTGTCTGCAGTGAACGTG..	22	0	1	1.00	1	0	1	0	0	0
.........................................................................................................................TTGTGCCCAGGGACTCGGGTA..........................	21	1	1	1.00	1	1	0	0	0	0
ATTGGGCCACAACGGTGC......................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0
..........................................................................................................................TGTGCCCAAGGACTCGGGTTT.........................	21	2	1	1.00	1	1	0	0	0	0
...............................ATGATGAACATGATAATGG......................................................................................................................	19	0	1	1.00	1	1	0	0	0	0
..................CGGAAAGACAACCATGATGA..................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0
..TGGGCCACAACGGTGCCGGAA.................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
.................................................................................................................................................TGGTTGTCTGCAGTGAGCGTG..	21	2	1	1.00	1	0	1	0	0	0
...............................................................................................................................................AATGGTTGTCTGCAGTGAACG....	21	1	1	1.00	1	1	0	0	0	0
..............................................................................................................................................AAATAGTTGTCTGCAGTGAACGT...	23	0	1	1.00	1	0	1	0	0	0
...............................................................................................GACATTTGTTTACCATTCAAT....................................................	21	0	1	1.00	1	1	0	0	0	0
......CCACAACGGTGCCGGAAAGAC.............................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
................................................................................................................................................ATAGTTGTCTGCAGTGAACGTGA.	23	0	1	1.00	1	0	0	0	1	0
.........................................................................................................................TTGTGCCCAAGGACTCGGGTA..........................	21	0	1	1.00	1	1	0	0	0	0
..................................................................................................................................................AGTTGTCTGCAGTGAACGTGA.	21	0	1	1.00	1	1	0	0	0	0
.....................................................................AGAGAAAGTGTGCGAGAGAATTA............................................................................	23	0	1	1.00	1	0	1	0	0	0
................................................................................................................................................ATAGTTGTCTGCAGTGAACG....	20	0	1	1.00	1	1	0	0	0	0
..................................................................................................................ATAGGTCTTGTGCCCAAGGA..................................	20	0	1	1.00	1	1	0	0	0	0
.................CCGGAAAGACAACCATGATGAAC................................................................................................................................	23	0	1	1.00	1	0	1	0	0	0
...........................................................................................................................................GTAAAATAGTTGTCTGCAGTGAA......	23	0	1	1.00	1	0	1	0	0	0
...........................................................................................................................................GTAAAATAGTTGTCTGCA...........	18	0	1	1.00	1	0	0	0	1	0
................................................................................................................................CAAGGACTCGGGTAAAATAGT...................	21	0	1	1.00	1	0	1	0	0	0
...................................................................................................................................................GTTGTCTGCAGTGAACGT...	18	0	1	1.00	1	0	0	0	1	0
........................................................................................................................................CGGGTAAAATAGTTGTCTGCA...........	21	0	1	1.00	1	1	0	0	0	0
.....................AAAGACAACCATGATGAACAT..............................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
.......................................................CAAAAAGAAACGGGAGAGA..............................................................................................	19	0	1	1.00	1	1	0	0	0	0
...................................................................................................................................................GTTGTCTGCAGTGAACGTGAT	21	0	1	1.00	1	1	0	0	0	0
.........................................................................................................................TTGTGCCCAAGGACTCGGGTAT.........................	22	1	1	1.00	1	1	0	0	0	0
............................................................................................................CATTCAATAGGTCTTGTGCC........................................	20	0	1	1.00	1	1	0	0	0	0
......................AAGACAACCATGATGAACATG.............................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
...............................................................................................................................................AATAGTTGTCTGCAGTGAACGT...	22	0	1	1.00	1	0	1	0	0	0
.....GCCACAACGGTGCCGGAAAGA..............................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
.........CAACGGTGCCGGAAAGACAACC.........................................................................................................................................	22	0	1	1.00	1	0	1	0	0	0
.............................................................................................................................................AAAATAGTTGTCTGCAGTGAACGT...	24	0	1	1.00	1	0	1	0	0	0
........................................................AAAAAGAAACGGGAGAGAAAGT..........................................................................................	22	0	1	1.00	1	0	1	0	0	0
.........CAACGGTGCCGGAAAGACAA...........................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0
..................................................................................................................................................AGTTGTCTGCAGTGAACGT...	19	0	1	1.00	1	0	1	0	0	0
........................................................................................................................CTTGTGCCCAAGGACTCGGGTTT.........................	23	2	1	1.00	1	1	0	0	0	0
...............................................................................................................................................AATAGTTGTCTGCAGTGAA......	19	0	1	1.00	1	1	0	0	0	0
.......CACAACGGTGCCGGAAAGACA............................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
.............GGTGCCGGAAAGACGACCCTGCTGA..................................................................................................................................	25	3	1	1.00	1	0	0	0	1	0
...................................................................................................................................GGACTCGGGTAAAATAGTTGT................	21	0	1	1.00	1	1	0	0	0	0
..............................CATGATGAACATGATAATGGGT....................................................................................................................	22	0	1	1.00	1	0	1	0	0	0
.............................................AATGGGTAAACAAAAAGAAAC......................................................................................................	21	0	1	1.00	1	1	0	0	0	0
.......CACAACGGTGCCGGAAAGACAACCATGAT....................................................................................................................................	29	0	1	1.00	1	1	0	0	0	0
.............................................................................................................................................AAAATAGTTGTCTGCAGTG........	19	0	1	1.00	1	1	0	0	0	0
.........................................................................................................................TTGTGCCCAAGGACTCGGG............................	19	0	1	1.00	1	1	0	0	0	0
................................................................................................................................................ATAGTTGTCTGCAGTGAACGTGAT	24	0	1	1.00	1	1	0	0	0	0
........................................................................................................TTACCATTCAATAGGTCTTGT...........................................	21	0	1	1.00	1	0	1	0	0	0
..............................................................AAACGGGAGAGAAAGTGTGCG.....................................................................................	21	0	1	1.00	1	1	0	0	0	0
...............TGCCGGAAAGACAACCATGATGAACA...............................................................................................................................	26	0	1	1.00	1	1	0	0	0	0
.............GGTGCCGGAAAGACGACCCTGC.....................................................................................................................................	22	3	1	1.00	1	0	0	0	0	1
..................................................................................................................ATAGGTCTTGTGCCCAAGGAC.................................	21	0	1	1.00	1	1	0	0	0	0
.TTGGGCCACAACGGTGCCGGA..................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
.....................................................................AGAGAAAGTGTGCGAGAGAAT..............................................................................	21	0	1	1.00	1	0	1	0	0	0
..................................................................................................................ATGGGTCTTGTGCCCAAGGACTCGGGT...........................	27	1	1	1.00	1	0	1	0	0	0
..........................................................AAAGAAACGGGAGAGAAAGTG.........................................................................................	21	0	1	1.00	1	0	1	0	0	0
...........................................................................................................................GTGCCCAAGGACTCGGGTA..........................	19	0	1	1.00	1	1	0	0	0	0
.........................................................................................................................TTGTGCCCAAGGACTCGGT............................	19	1	1	1.00	1	1	0	0	0	0
.......CACAACGGTGCCGGAAAGAC.............................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0
................GCCGGAAAGACAACCATGAT....................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0
..............................................................................................................................................AAATAGTTGTCTGCAGTGAA......	20	0	1	1.00	1	1	0	0	0	0
......................................................................................................................................CTCGGGTAAAATAGTTGTCTG.............	21	0	1	1.00	1	1	0	0	0	0
.....................................................................................................TGTTTACCATTCAATAGGTCT..............................................	21	0	1	1.00	1	1	0	0	0	0
..........AACGGTGCCGGAAAGACAACCATGATG...................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0
.....................................................................AGAGAAAGTGTGCGAGAGAATT.............................................................................	22	0	1	1.00	1	0	1	0	0	0
....................GAAAGACAACCATGATGA..................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0
....................................................AAACAAAAAGAAACGGGAGAG...............................................................................................	21	0	1	1.00	1	1	0	0	0	0
........ACAACGGTGCCGGAAAGAC.............................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0
..................................................................................................................................................AGTTGTCTGCAGTGAACGTG..	20	0	1	1.00	1	1	0	0	0	0
................................................................................GCGAGAGAGTTGGTTGACATT...................................................................	21	3	5	0.20	1	0	1	0	0	0
.....................................................................................................................................CGTCGGGAAAAATAGTTGTC...............	20	3	6	0.17	1	0	1	0	0	0
................................................................AGTGGAGAGAAAGTGTGC......................................................................................	18	2	9	0.11	1	0	0	0	1	0
.......................................ATTGATAATGGGTAAACAAA.............................................................................................................	20	2	10	0.10	1	0	0	0	1	0
.......................GGACAGCCGTGATGAACAT..............................................................................................................................	19	3	13	0.08	1	1	0	0	0	0
............TGGTGCCGGAAAGTGAACC.........................................................................................................................................	19	3	18	0.06	1	0	0	1	0	0
..................................................................................................................................................ACTTGTCCGCATTGAACGT...	19	3	20	0.05	1	1	0	0	0	0

TAACCCGGTGTTGCCACGGCCTTTCTGTTGGTACTACTTGTACTATTACCCATTTGTTTTTCTTTGCCCTCTCTTTCACACGCTCTCTTAATTAACTGTAAACAAATGGTAAGTTATCCAGAACACGGGTTCCTGAGCCCATTTTATCAACAGACGTCACTTGCACTA ************************************************.................((.(((.((((((.(((.........))))))))).))).)).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	M020 head	V117 male body	V119 head	V118 embryo
..................GCCTTTCTGTTGGTACTACTT.................................................................................................................................	21	0	1	9.00	9	4	5	0	0	0
..................................................................................................................................................TCAACAGACGTCACTTGCACT.	21	0	1	5.00	5	5	0	0	0	0
........................................................................................................................................GCCCATTTTATCAACAGACGT...........	21	0	1	4.00	4	4	0	0	0	0
.................GGCCTTTCTGTTGGTACTACT..................................................................................................................................	21	0	1	4.00	4	4	0	0	0	0
....................................................................................................................................CTGAGCCCATTTTATCAACAG...............	21	0	1	3.00	3	3	0	0	0	0
...............................................................................................................................GGTTCCTGAGCCCATTTTATC....................	21	0	1	3.00	3	3	0	0	0	0
..........................................................................TTCACACGCTCTCTTAATTAA.........................................................................	21	0	1	3.00	3	3	0	0	0	0
..ACCCGGTGTTGCCACGGCCTT.................................................................................................................................................	21	0	1	3.00	3	3	0	0	0	0
.......................................................................................................................................AGCCCATTTTATCAACAGACG............	21	0	1	3.00	3	3	0	0	0	0
..................................................................................................................................TCCTGAGCCCATTTTATCAAC.................	21	0	1	2.00	2	1	0	1	0	0
.....................................................TTGTTTTTCTTTGCCCTCTCT..............................................................................................	21	0	1	2.00	2	2	0	0	0	0
.....................................................................TCTCTTTCACACGCTCTCTTA..............................................................................	21	0	1	2.00	2	2	0	0	0	0
....................................................................................................................TCCAGAACACGGGTTCCTGA................................	20	0	1	2.00	2	2	0	0	0	0
...............................................................................................CTGTAAACAAATGGTAAGTTA....................................................	21	0	1	2.00	2	1	0	1	0	0
..............CACGGCCTTTCTGTTGGTACT.....................................................................................................................................	21	0	1	2.00	2	2	0	0	0	0
.....CGGTGTTGCCACGGCCTTT................................................................................................................................................	19	0	1	2.00	2	2	0	0	0	0
.............................................................................ACACGCTCTCTTAATTAACTG......................................................................	21	0	1	2.00	2	2	0	0	0	0
.........GTTGCCACGGCCTTTCTGTTG..........................................................................................................................................	21	0	1	2.00	2	2	0	0	0	0
.............................................................................................................................CGGGTTCCTGAGCCCATTTTA......................	21	0	1	2.00	2	2	0	0	0	0
......GGTGTTGCCACGGCCTTTC...............................................................................................................................................	19	0	1	2.00	2	2	0	0	0	0
....................CTTTCTGTTGGTACTACTTGT...............................................................................................................................	21	0	1	2.00	2	2	0	0	0	0
.........................................................................................................................................CCCATTTTATCAACAGACGTC..........	21	0	1	2.00	2	2	0	0	0	0
.....CGGTGTTGCCACGGCCTTTCT..............................................................................................................................................	21	0	1	2.00	2	1	0	1	0	0
....CCGGTGTTGCCACGGCCTTTC...............................................................................................................................................	21	0	1	2.00	2	1	0	1	0	0
...........................................................TTCTTTGCCCTCTCTTTCACA........................................................................................	21	0	1	2.00	2	2	0	0	0	0
......................................................................................................................TTGAACACGGGTTCCTGAGCC.............................	21	2	1	1.00	1	1	0	0	0	0
............................................................................................................................................ATTTTATCAACAGACGTCAC........	20	0	1	1.00	1	1	0	0	0	0
..............TACGGCCTTTCTGTTGGTACTA....................................................................................................................................	22	1	1	1.00	1	1	0	0	0	0
...CCCGGTGTTGCCACGGCCTTT................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
..........................................................................................................................ACACGGGTTCCTGAGCCCAT..........................	20	0	1	1.00	1	1	0	0	0	0
.......GTGTTGCCACGGCCTTTCTGT............................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0
.........................................ACTATTACCCATTTGTTTTTC..........................................................................................................	21	0	1	1.00	1	1	0	0	0	0
.................GGCCTTTCTGTTGGTACTAC...................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0
.......................................................................................................................................AGCCCATTTTATCGACAGACG............	21	1	1	1.00	1	1	0	0	0	0
.........GTTGCCACGGCCTTTCTGT............................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0
.....................................................................................................................CCAGAACACGGGTTCCTGAGC..............................	21	0	1	1.00	1	1	0	0	0	0
.................................................................GCCCTCTCTTTCGCACGCTCTC.................................................................................	22	1	1	1.00	1	0	1	0	0	0
...........................................................................................................................................CATTTTATCAACAGACGTCAC........	21	0	1	1.00	1	1	0	0	0	0
..............................................................................................................................GGGTTCCTGAGCCCATTTTA......................	20	0	1	1.00	1	1	0	0	0	0
...............................................................................................................................GGTTCCTGAGCCCATTTTAT.....................	20	0	1	1.00	1	1	0	0	0	0
.................................................................................................................................TTCCTGAGCCCATTTTATC....................	19	0	1	1.00	1	1	0	0	0	0
.....................TTTCTGTTGGTACTACTTG................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0
............................................................................................................................ACGGGTTCCTGAGCCCATT.........................	19	0	1	1.00	1	1	0	0	0	0
.............CCACGGCCTTTCTGTTGGT........................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0
................CGGCCTTTCTGTTGGTACTAC...................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
...................CCTTTCTGTTGGTACTACTTG................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
.....CGGTGTTGCCACGGCCTTTC...............................................................................................................................................	20	0	1	1.00	1	0	0	1	0	0
.......................................................................................................................................AGCCCATTTTATCAACAGAC.............	20	0	1	1.00	1	1	0	0	0	0
............GCCACGGCCTTTCTGTTGGTA.......................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
..................................................................................................................................................TCAACGGACGTCACTTGCACT.	21	1	1	1.00	1	1	0	0	0	0
........TGTTGCCACGGCCTTTCTGTT...........................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0
...............ACGGCCTTTCTGTTGGTACTA....................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
......................TTCTGTTGGTACTACTTGTAC.............................................................................................................................	21	0	1	1.00	1	0	1	0	0	0
............................................................TCTTTGCCCTCTCTTTCACAC.......................................................................................	21	0	1	1.00	1	1	0	0	0	0
...............................................................................................CTGTAAACAAATGGTAAGTTAT...................................................	22	0	1	1.00	1	1	0	0	0	0
......GTTGTTGCCACGGCCTTTCTG.............................................................................................................................................	21	1	1	1.00	1	0	0	1	0	0
....................................................................................................................TCCAGAACACGGGTTCCTGAG...............................	21	0	1	1.00	1	1	0	0	0	0
......GGTGTTGCCACGGCCTTTCTG.............................................................................................................................................	21	0	1	1.00	1	0	0	1	0	0
...............................................................................................................................GGTTCCTGAGCCCATTTTA......................	19	0	1	1.00	1	1	0	0	0	0
..........................................................................................................................ACACGGGTTCCTGAGCCCATTT........................	22	0	1	1.00	1	1	0	0	0	0
.........GTTGCCACGGCCTTTCTGTT...........................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0
....................................................................CTCTCTTTCACACGCTCTCTT...............................................................................	21	0	1	1.00	1	1	0	0	0	0
....................................................TTTGTTTTTCTTTGCCCTCTC...............................................................................................	21	0	1	1.00	1	1	0	0	0	0
..........................................................................................................................ACACGGGTTCCTGGGCCCATT.........................	21	1	1	1.00	1	1	0	0	0	0
................CGGCCTTTCTGTTGGTACTA....................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0
...........................................................................TCACACGCTCTCTTAATTAA.........................................................................	20	0	1	1.00	1	1	0	0	0	0
..................GCCTTTCTGTTGGTACTAC...................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0
...........................................................................TCACACGCTCTCTTAATTAAC........................................................................	21	0	1	1.00	1	1	0	0	0	0
...............................................................................................CTGTAAACAAATGGTAAGTT.....................................................	20	0	1	1.00	1	0	0	0	1	0
.....CGGGGTTGCCACGGCGTGTC...............................................................................................................................................	20	3	4	0.50	2	2	0	0	0	0
.........................................TCTGTTACCCATTTGTTTTTCTT........................................................................................................	23	2	2	0.50	1	1	0	0	0	0
.....CGGGGTTGCCACGGCGTGTCT..............................................................................................................................................	21	3	2	0.50	1	1	0	0	0	0
..........................................................................TTCGCACACTCTCTGAATTAA.........................................................................	21	3	5	0.40	2	1	0	0	0	1

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004577:24988-25155 -	dwi_1541	ATTGGGCCACAACGGTGCCGGAAAGACAACCATGATGAACATGATAATGGGTAAACAA-----AAAGAAAC--------------------GG------------------GAGAGAAAGTGTGCGAGAGAATTAATT-----------------GACATTTGTT-----TAC--CATTC---------AATAGGTCTTGTGCCCAAGGACTCGGGTAAAATAGTTGTCTGCAGTGAACGTGAT
droVir3	scaffold_12723:717920-718101 +	dvi_1171	ACTGGGCCACAACGGTGCCGGAAAGACAACTATGATGAACATGATTATGGGTACGTTA--GCTTGCGGTCATATATGGTCTGCCAAAATTTCGATTG-TAATTGTG----------------TC---------TTACT-----------------TCTA---TTC-----TTTTCAATTT---------TCTAGGCATTGTACCTAAGGATGCGGGCAAGATCGTTGTTTGCAGCGAGCGTGAT
droMoj3	scaffold_6500:29240367-29240437 +		GCTGGGGCATAACGGCGCCGGCAAGACGACCATGATGAACATGATTATGGGTATATATTAAA-TAAAAAC---------------------AG-------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15252:4258731-4258898 +		ACTGGGACACAACGGTGCCGGCAAGACAACCATGATGAACATGATTATGGGTAGCGTA-----TTCCTAG---------------------CAATTT-CATGTTTT----------------CC---------CATTC-----------------TAAGTTGCTC--GCACTCTTTCTCA-----TTGTGGTAGGCACTGTACCAAAGGATGCTGGTAAAATTGTTGTTTGCAGTGAGCGCGAT
dp5	4_group4:5948348-5948516 -		CTTGGGCCACAACGGAGCCGGAAAGACAACGATGATGAACATGATTATGGGTTCGATC-----TTTGATT---------------------CACC----------------------------------------------ATCTGCCCCTTATCAGGGTCCATATTG--ACCTTCCTCTCGGCATTG-TTTAGGTCTGGTCCCGAAGGATGCGGGCAAGATTGTTGTCTGTAGCGAGCGCGAT
droPer2	scaffold_16:955151-955319 +		CTTGGGCCACAACGGAGCCGGAAAGACAACGATGATGAACATGATTATGGGTTCGATC-----TTTGATT---------------------CACC----------------------------------------------ATCTGCCCCTTATCAGGGTCCATATTG--ACCTTCCTCTCGGCATTG-TTTAGGTCTGGTCCCGAAGGATGCGGGCAAGATTGTTGTCTGTAGCGAGCGCGAT
droAna3	scaffold_12916:11995088-11995246 -		GCTCGGGCACAATGGCGCTGGCAAAACCACGATGATGAACATGATAATGGGTATAATT-----TGAAGCA----------------------------------TGAAAATTTTTTATA---AT---------AAACTACAATTTGC-----------------A-----TTT---TATT---------TTCAGGACTGGTGCCGAAGGACTCGGGAAAAATAATCGTGTGCAGTGAACGGGAT
droBip1	scf7180000396769:344506-344663 -		GCTCGGACACAACGGCGCTGGCAAGACCACTATGATGAACATGATAATGGGTAACTAT-----TTCGAGTA---------------------------------TGAATACTCTATAAAGTATACAACTGAA--------------------------------T-----T--ATTGTTT---------TGTAGGACTGGTGCCAAAGGACTCGGGAAAAATAATTGTGTGCAGTGAACGGGAT
droKik1	scf7180000302236:177955-178113 -		GCTGGGCCACAACGGGGCTGGAAAGACCACGATGATGAACATGATAATGGGTGAGCAT-----A-AGC-----------------------ATATCCT-TGGGATG----------------AA-------ATCATAC-------G---------CATGCTGACC-----GTCT--ACTT---------TCCAGGACTGGTGCCCAAGGATTCGGGCAAGATAGTTGTCTGCAGCGAGCGCGAC
droFic1	scf7180000453925:205774-205935 -		ACTGGGCCACAATGGTGCTGGCAAGACCACTATGATGAACATGATTATGGGTGAGTAA-----TTAGAAT---------------------AATTCTATTGGCGTG----------------TA---------CATTT-----------------GATACTGACC-----CTCTATCTTA---------TCCAGGATTGGTACCCAAGGATTCGGGAAAGATTATTGTGTGCAGTGAGCGGGAT
droEle1	scf7180000491338:1398159-1398320 +		ACTGGGCCACAACGGTGCTGGCAAGACCACGATGATGAACATGATAATGGGTGAGCAA-----GGAAAAC---------------------AATTCCTAGTTCTTA----------------AC---------CAACT-----------------CATGCTGATC-----CTCTGACTTT---------TCCAGGACTGGTGCCCAAGGATTCGGGCAAGATTATAGTGTGTAGTGAGCGCGAC
droRho1	scf7180000780107:292072-292233 -		ACTGGGTCACAACGGTGCTGGCAAGACCACGATGATGAACATGATAATGGGTGAGCAA-----GCAAAAC---------------------CAATCTCTCTTTATG----------------AC---------CATCT-----------------CATGCTAATC-----CTCTGTCTTC---------TGCAGGACTGGTGCCTAAGGATTCGGGCAAGATAACTGTGTGCAGTGAGCGCGAT
droBia1	scf7180000302408:2540065-2540225 -		ACTGGGCCACAATGGGGCCGGCAAAACCACAATGATGAACATGATAATGGGTGGGCAA-----CACGCCA---------------------TACC-CCCTTCTTTG----------------GG---------ACATG-----------------ATAACTGATG-----GTCTTACTTT---------TGCAGGATTGGTGCCCAAGGACTCGGGCAAGATAACTGTGTGCAGTGAGCGCGAT
droTak1	scf7180000416008:58713-58812 +		ACTGGGACACAATGGAGCTGGCAAGACCACGATGATGAACATGATAATGG------------------------------------------------------------------------------------------------------------------------------------------------GACTGGTGCCGAAGGATTCGGGCAAGATAATCGTGTGCAGTGAGCGCGAT
droEug1	scf7180000409452:358032-358189 +		TCTGGGCCACAATGGTGCTGGAAAGACCACGATGATGAACATGATAATGGGTTAGAAT-----AGAAATA---------------------CAATTT-CTTTCTCG----------------GC---------CAACT-----------------AATATTTATA-----GTA---AATT---------TTTAGGATTGGTTCCGAAGGATTCGGGCAAGATAATGGTCTGCAGTGAGCGCGAC
dm3	chr2L:13786447-13786608 +		GCTGGGCCACAATGGAGCTGGAAAAACAACCATGATGAACATGATAATGGGTAGGGAC-----TCAAACT---------------------CAATTCGCTTCCTCG----------------GC---------CATCC-----------------AATGCACATG-----TTGATTCTCT---------TTCAGGATTGGTACCAAAGGATTCGGGCAAGATAATTGTGTGCAGTGAGCGCGAT
droSim2	2l:13371910-13372071 +		GCTGGGCCACAATGGGGCTGGAAAAACTACCATGATGAACATGATAATGGGTAAGGAC-----TCAAACT---------------------CAATTCGCTTCCTCG----------------AC---------CACCC-----------------AATGCACATG-----TCAATTCTCT---------TTCAGGATTGGTACCAAAGGATTCGGGCAAGATAATTGTGTGCAGTGAGCGCGAT
droSec2	scaffold_3:52034-52195 +		GCTGGGCCACAATGGGGCTGGAAAAACTACCATGATGAACATGATAATGGGTAAGGAC-----TCAAACT---------------------CAATTCGCTTCCTCG----------------AC---------CACCC-----------------AATGCACATG-----TTGATTCTCT---------TTCAGGATTGGTACCAAAGGATTCGGGCAAGATAATTGTGTGCAGTGAGCGCGAT
droYak3	2L:10198123-10198282 +		GCTGGGCCACAATGGTGCTGGAAAAACTACCATGATGAACATGATAATGGGTAGGGAA-----AA--ACT---------------------CAAATCGCTTCCTTG----------------AC---------CAACG-----------------AATGCTGACG-----TGCTTTCTCT---------TTTAGGATTGGTACCAAAGGATTCGGGAAAAATAATTGTGTGCAGTGAGCGCGAT
droEre2	scaffold_4929:11679782-11679856 -		GCTGGGCCACAATGGCGCTGGAAAAACAACCATGATGAATATGATAATGGGTAGGGAT--------------------------------------------------------------------------------------------------------------------------------------------AAGCTCAAAGAAGCTGG-----------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

ATTGGGCCACAACGGTGCCGGAAAGACAACCATGATGAACATGATAATGGGTAAACAA-----AAAGAAAC--------------------GG------------------GAGAGAAAGTGTGCGAGAGAATTAATT-----------------GACATTTGTT-----TAC--CATTC---------AATAGGTCTTGTGCCCAAGGACTCGGGTAAAATAGTTGTCTGCAGTGAACGTGAT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................................................................................................GTCTTGTGCCCAAGGACTCGG.............................	21	1	12.00	12	0	12	0	0	0
.......................................................................................................................................................................................................................GTAAAATAGTTGTCTGCAGTG........	21	1	10.00	10	0	10	0	0	0
...................................................................................................................................................................................................TCTTGTGCCCAAGGACTCGGG............................	21	1	7.00	7	0	7	0	0	0
.............................................................................................................................................................................................................................TAGTTGTCTGCAGTGAACGTG..	21	1	5.00	5	0	3	2	0	0
............................................................................................................................................................................................................................ATAGTTGTCTGCAGTGAACGT...	21	1	5.00	5	0	1	4	0	0
...........................................................................................................................................................................................................................AATAGTTGTCTGCAGTGAACG....	21	1	4.00	4	0	3	1	0	0
.........CAACGGTGCCGGAAAGACAAC......................................................................................................................................................................................................................	21	1	4.00	4	0	2	2	0	0
..........................................................................................................................................................................................................................AAATAGTTGTCTGCAGTGAAC.....	21	1	4.00	4	4	0	0	0	0
....................................................................................................................AAAGTGTGCGAGAGAATTAAT...........................................................................................................	21	1	4.00	4	0	1	3	0	0
..................................................GTAAACAA-----AAAGAAAC--------------------GG------------------GAG..................................................................................................................................	21	1	3.00	3	0	1	2	0	0
...................................................................................................................................................................................................................TCGGGTAAAATAGTTGTCTGC............	21	1	2.00	2	0	1	1	0	0
.................................................................................................................................................................................................GGTCTTGTGCCCAAGGACTCGG.............................	22	1	2.00	2	0	2	0	0	0
...............................................................................................................................................................................................TAGGTCTTGTGCCCAAGGACT................................	21	1	2.00	2	0	2	0	0	0
................................................................AAGAAAC--------------------GG------------------GAGAGAAAGTGT.........................................................................................................................	21	1	2.00	2	0	0	2	0	0
.................................GATGAACATGATAATGGGTAA..............................................................................................................................................................................................	21	1	2.00	2	0	1	1	0	0
........................................................................................................................................................................................................................TAAAATAGTTGTCTGCAGTGA.......	21	1	2.00	2	0	2	0	0	0
.....................AAAGACAACCATGATGAACA...........................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0
....................GAAAGACAACCATGATGAACA...........................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0
..................................................................GAAAC--------------------GG------------------GAGAGAAAGTGTGC.......................................................................................................................	21	1	2.00	2	0	0	2	0	0
....................................................................................................................................................................................................CTTGTGCCCAAGGACTCGGGT...........................	21	1	2.00	2	1	1	0	0	0
........................................................................................................................................................................................................................TAAAATAGTTGTCTGCAGTG........	20	1	2.00	2	0	2	0	0	0
......................................................................................................................................................................................................TGTGCCCAAGGACTCGGGTA..........................	20	1	2.00	2	0	2	0	0	0
.................................................................................................................................................................................................GGTCTTGTGCCCAAGGACTC...............................	20	1	2.00	2	0	2	0	0	0
......................................................................................................................................................................................................TGTGCCCAAGGACTCGGGTAA.........................	21	1	2.00	2	0	2	0	0	0
...................................................................................................................................................................................................................TCGGGTAAAATAGTTGTCTG.............	20	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................AAAATAGTTGTCTGCAGTGAA......	21	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................TTGTGCCCAAGGACTCGGGT...........................	20	1	1.00	1	0	1	0	0	0
.......................................................CAA-----AAAGAAAC--------------------GG------------------GAGAGAA..............................................................................................................................	20	1	1.00	1	0	0	1	0	0
............CGGTGCCGGAAAGACAACCATGATG...............................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..........AACGGTGCCGGAAAGACAAC......................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
..............................................................................................................................................................................................ATAGGTCTTGTGCCCAAGG...................................	19	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................CAAGGACTCGGGTAAAATAGTTGT................	24	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................ATAGTTGTCTGCAGTGAACGTG..	22	1	1.00	1	0	0	1	0	0
ATTGGGCCACAACGGTGC..................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
......................................................................................................................................................................................................TGTGCCCAAGGACTCGGGTTT.........................	21	1	1.00	1	0	1	0	0	0
...............................ATGATGAACATGATAATGG..................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
..................CGGAAAGACAACCATGATGA..............................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
..TGGGCCACAACGGTGCCGGAA.............................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................AAATAGTTGTCTGCAGTGAACGT...	23	1	1.00	1	0	0	1	0	0
...........................................................................................................................................................GACATTTGTT-----TAC--CATTC---------AAT....................................................	21	1	1.00	1	0	1	0	0	0
......CCACAACGGTGCCGGAAAGAC.........................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................ATAGTTGTCTGCAGTGAACGTGA.	23	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................TTGTGCCCAAGGACTCGGGTA..........................	21	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................AGTTGTCTGCAGTGAACGTGA.	21	1	1.00	1	0	1	0	0	0
................................................................................................................AGAGAAAGTGTGCGAGAGAATTA.............................................................................................................	23	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................ATAGTTGTCTGCAGTGAACG....	20	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................ATAGGTCTTGTGCCCAAGGA..................................	20	1	1.00	1	0	1	0	0	0
.................CCGGAAAGACAACCATGATGAAC............................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................GTAAAATAGTTGTCTGCAGTGAA......	23	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................GTAAAATAGTTGTCTGCA...........	18	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................CAAGGACTCGGGTAAAATAGT...................	21	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................GTTGTCTGCAGTGAACGT...	18	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................CGGGTAAAATAGTTGTCTGCA...........	21	1	1.00	1	0	1	0	0	0
.....................AAAGACAACCATGATGAACAT..........................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.......................................................CAA-----AAAGAAAC--------------------GG------------------GAGAGA...............................................................................................................................	19	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................GTTGTCTGCAGTGAACGTGAT	21	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................TTGTGCCCAAGGACTCGGGTAT.........................	22	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................CATTC---------AATAGGTCTTGTGCC........................................	20	1	1.00	1	0	1	0	0	0
......................AAGACAACCATGATGAACATG.........................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................AATAGTTGTCTGCAGTGAACGT...	22	1	1.00	1	0	0	1	0	0
.....GCCACAACGGTGCCGGAAAGA..........................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.........CAACGGTGCCGGAAAGACAACC.....................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................AAAATAGTTGTCTGCAGTGAACGT...	24	1	1.00	1	0	0	1	0	0
........................................................AA-----AAAGAAAC--------------------GG------------------GAGAGAAAGT...........................................................................................................................	22	1	1.00	1	0	0	1	0	0
.........CAACGGTGCCGGAAAGACAA.......................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................AGTTGTCTGCAGTGAACGT...	19	1	1.00	1	0	0	1	0	0
....................................................................................................................................................................................................CTTGTGCCCAAGGACTCGGGTTT.........................	23	1	1.00	1	0	1	0	0	0
...........................................................................................................................................................................................................................AATAGTTGTCTGCAGTGAA......	19	1	1.00	1	0	1	0	0	0
.......CACAACGGTGCCGGAAAGACA........................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................GGACTCGGGTAAAATAGTTGT................	21	1	1.00	1	0	1	0	0	0
..............................CATGATGAACATGATAATGGGT................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.............................................AATGGGTAAACAA-----AAAGAAAC--------------------.........................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.......CACAACGGTGCCGGAAAGACAACCATGAT................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0
.........................................................................................................................................................................................................................AAAATAGTTGTCTGCAGTG........	19	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................TTGTGCCCAAGGACTCGGG............................	19	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................................................ATAGTTGTCTGCAGTGAACGTGAT	24	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................T-----TAC--CATTC---------AATAGGTCTTGT...........................................	21	1	1.00	1	0	0	1	0	0
...................................................................AAAC--------------------GG------------------GAGAGAAAGTGTGCG......................................................................................................................	21	1	1.00	1	0	1	0	0	0
...............TGCCGGAAAGACAACCATGATGAACA...........................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................ATAGGTCTTGTGCCCAAGGAC.................................	21	1	1.00	1	0	1	0	0	0
.TTGGGCCACAACGGTGCCGGA..............................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
................................................................................................................AGAGAAAGTGTGCGAGAGAAT...............................................................................................................	21	1	1.00	1	0	0	1	0	0
...............................................................AAAGAAAC--------------------GG------------------GAGAGAAAGTG..........................................................................................................................	21	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................GTGCCCAAGGACTCGGGTA..........................	19	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................TTGTGCCCAAGGACTCGGT............................	19	1	1.00	1	0	1	0	0	0
.......CACAACGGTGCCGGAAAGAC.........................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
................GCCGGAAAGACAACCATGAT................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................AAATAGTTGTCTGCAGTGAA......	20	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................CTCGGGTAAAATAGTTGTCTG.............	21	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................TGTT-----TAC--CATTC---------AATAGGTCT..............................................	21	1	1.00	1	0	1	0	0	0
..........AACGGTGCCGGAAAGACAACCATGATG...............................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
................................................................................................................AGAGAAAGTGTGCGAGAGAATT..............................................................................................................	22	1	1.00	1	0	0	1	0	0
....................GAAAGACAACCATGATGA..............................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
....................................................AAACAA-----AAAGAAAC--------------------GG------------------GAGAG................................................................................................................................	21	1	1.00	1	0	1	0	0	0
........ACAACGGTGCCGGAAAGAC.........................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................AGTTGTCTGCAGTGAACGTG..	20	1	1.00	1	0	1	0	0	0

droVir3

ACTGGGCCACAACGGTGCCGGAAAGACAACTATGATGAACATGATTATGGGTACGTTA--GCTTGCGGTCATATATGGTCTGCCAAAATTTCGATTG-TAATTGTG----------------TC---------TTACT-----------------TCTA---TTC-----TTTTCAATTT---------TCTAGGCATTGTACCTAAGGATGCGGGCAAGATCGTTGTTTGCAGCGAGCGTGAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................................TACCTAAGGATGCGGGCAAGATCGTTGT................	28	1	7.00	7	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3
........................................................................................................................................................................................................TACCTAAGGATGCGGGCAAGATCGTTG.................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TAAGGATGCGGGCAAGATCGTTGT................	24	1	5.00	5	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TACCTAAGGATGCGGGCAAGATCGT...................	25	1	4.00	4	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TACCTAAGGATGCGGGCAAGATC.....................	23	1	3.00	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TACCTAAGGATGCGGGCAAGATCGTT..................	26	1	3.00	3	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TTGTACCTAAGGATGCGGGCAAGATCG....................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATTGTACCTAAGGATGCGGGC...........................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................TAAGGATGCGGGCAAGATCGTTGTC...............	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CGGGCAAGATCGTTGTTTGC............	20	1	2.00	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................................................................TTCGATTG-TAATTGTG----------------TC---------TTA............................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............TGCCGGAAAGACAACTATGATGAACA...........................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GCGGGCAAGATCGTTGTTTGCAGCGAG......	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TCGTTGTTTGCAGCGAGCGTG..	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TGCGGGCAAGATCGTTGTTTGC............	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TAAGGATGCGGGCAAGATCGTT..................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TACCTAAGGATGCGGGCAAGATCGTC..................	26	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CAATTT---------TCTAGGCATTGTACC........................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................AAGGATGCGGGCAAGATCGTTGTTT..............	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AAGACAACTATGATGAACA...........................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................AGGATGCGGGCAAGATCGTTG.................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TTGTACCTAAGGATGCGGGCAAGA.......................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GTGCCGGAAAGACAACTATGATGA..............................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................TC-----TTTTCAATTT---------TCTAGGCAT..............................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CGGTGCCGGAAAGACAACTAT...................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................TGTACCTAAGGATGCGGGCAAG........................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................ATATATGGTCTGCCAAAATTT.........................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TTGTACCTAAGGATGCGGGCA..........................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ACGGTGCCGGAAAGACAACTATGATGA..............................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TGGGCCACAACGGTGCCGGAAAGACA........................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TAAGGATGCGGGCAAGATCGTTGTTT..............	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CGGGCAAGATCGTTGTTTGCA...........	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TACCTAAGGATGCGGGCA..........................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................GCCGGAAAGACAACTATGATGAAC............................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................CCGGAAAGACAACTATGATGA..............................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CATTGTACCTAAGGATGCGGGC...........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TGTACCTAAGGATGCGGGCAAGATC.....................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TACCTAAGGATGCGGGCAAG........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTACGTTA--GCTTGCGGTCATATATGGT.....................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..TGGGCCACAACGGTGCCGGAAAGACAA.......................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TAAGGATGCGGGCAAGATCGT...................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................AAATTTCGATTG-TAATTGTG----------------TT---------...............................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................CGTTGTTTGCAGCGAGCGTGA.	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........CAACGGTGCCGGAAAGACAACTATGA.................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TACCTAAGGATGCGGGCAAGAT......................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TTGTACCTAAGGATGCGGGCAAGATCGTTGTT...............	32	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..TGGGCCACAACGGTGCCGGAAAGACAAC......................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................GTACCTAAGGATGCGGGC...........................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................TGTG----------------TC---------TTACT-----------------TCTA---TTC-----TT........................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................TGCGGGCAAGATCGTTGT................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................GCGGGCAAGATCGTTGTTTGCAGCGA.......	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CATTGTACCTAAGGATGCGGG............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................CTAGGCATTGTACCTAAGG...................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................TGGGTACGTTA--GCTTGCGGTC..............................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCTGGGGCATAACGGCGCCGGCAAGACGACCATGATGAACATGATTATGGGTATATATTAAA-TAAAAAC---------------------AG-------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......GCATAACGGCGCCGGCAAG...........................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........ATAACGGCGCCGGCAAGACG........................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0

droGri2

ACTGGGACACAACGGTGCCGGCAAGACAACCATGATGAACATGATTATGGGTAGCGTA-----TTCCTAG---------------------CAATTT-CATGTTTT----------------CC---------CATTC-----------------TAAGTTGCTC--GCACTCTTTCTCA-----TTGTGGTAGGCACTGTACCAAAGGATGCTGGTAAAATTGTTGTTTGCAGTGAGCGCGAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dp5

CTTGGGCCACAACGGAGCCGGAAAGACAACGATGATGAACATGATTATGGGTTCGATC-----TTTGATT---------------------CACC----------------------------------------------ATCTGCCCCTTATCAGGGTCCATATTG--ACCTTCCTCTCGGCATTG-TTTAGGTCTGGTCCCGAAGGATGCGGGCAAGATTGTTGTCTGTAGCGAGCGCGAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....GCCACAACGGAGCCGGAAAGA..........................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............GAGCCGGAAAGACAACGAT...................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........CAACGGAGCCGGAAAGACAAC......................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................CTGGTCCCGAAGGATGCG..............................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................GATGAACATGATTATGGGTC...............................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................AGATTGTTGTCTGTAGCGAG......	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................ATTG-TTTAGGTCTGGTCCCG.......................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CTTGGGCCACAACGGAGCCGGAAAGACAACGATGATGAACATGATTATGGGTTCGATC-----TTTGATT---------------------CACC----------------------------------------------ATCTGCCCCTTATCAGGGTCCATATTG--ACCTTCCTCTCGGCATTG-TTTAGGTCTGGTCCCGAAGGATGCGGGCAAGATTGTTGTCTGTAGCGAGCGCGAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................GATGAACATGATTATGGGT................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
.......CACAACGGAGCCGGAAAGAC.........................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
.................................GATGAACATGATTATGGGC................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
......................AAGACAACGATGATGAACAT..........................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0

droAna3

GCTCGGGCACAATGGCGCTGGCAAAACCACGATGATGAACATGATAATGGGTATAATT-----TGAAGCA----------------------------------TGAAAATTTTTTATA---AT---------AAACTACAATTTGC-----------------A-----TTT---TATT---------TTCAGGACTGGTGCCGAAGGACTCGGGAAAAATAATCGTGTGCAGTGAACGGGAT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.CTCGGGCACAATGGCGCTGGCA.............................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0

droBip1

GCTCGGACACAACGGCGCTGGCAAGACCACTATGATGAACATGATAATGGGTAACTAT-----TTCGAGTA---------------------------------TGAATACTCTATAAAGTATACAACTGAA--------------------------------T-----T--ATTGTTT---------TGTAGGACTGGTGCCAAAGGACTCGGGAAAAATAATTGTGTGCAGTGAACGGGAT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCTGGGCCACAACGGGGCTGGAAAGACCACGATGATGAACATGATAATGGGTGAGCAT-----A-AGC-----------------------ATATCCT-TGGGATG----------------AA-------ATCATAC-------G---------CATGCTGACC-----GTCT--ACTT---------TCCAGGACTGGTGCCCAAGGATTCGGGCAAGATAGTTGTCTGCAGCGAGCGCGAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACTGGGCCACAATGGTGCTGGCAAGACCACTATGATGAACATGATTATGGGTGAGTAA-----TTAGAAT---------------------AATTCTATTGGCGTG----------------TA---------CATTT-----------------GATACTGACC-----CTCTATCTTA---------TCCAGGATTGGTACCCAAGGATTCGGGAAAGATTATTGTGTGCAGTGAGCGGGAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACTGGGCCACAACGGTGCTGGCAAGACCACGATGATGAACATGATAATGGGTGAGCAA-----GGAAAAC---------------------AATTCCTAGTTCTTA----------------AC---------CAACT-----------------CATGCTGATC-----CTCTGACTTT---------TCCAGGACTGGTGCCCAAGGATTCGGGCAAGATTATAGTGTGTAGTGAGCGCGAC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACTGGGTCACAACGGTGCTGGCAAGACCACGATGATGAACATGATAATGGGTGAGCAA-----GCAAAAC---------------------CAATCTCTCTTTATG----------------AC---------CATCT-----------------CATGCTAATC-----CTCTGTCTTC---------TGCAGGACTGGTGCCTAAGGATTCGGGCAAGATAACTGTGTGCAGTGAGCGCGAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACTGGGCCACAATGGGGCCGGCAAAACCACAATGATGAACATGATAATGGGTGGGCAA-----CACGCCA---------------------TACC-CCCTTCTTTG----------------GG---------ACATG-----------------ATAACTGATG-----GTCTTACTTT---------TGCAGGATTGGTGCCCAAGGACTCGGGCAAGATAACTGTGTGCAGTGAGCGCGAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACTGGGACACAATGGAGCTGGCAAGACCACGATGATGAACATGATAATGG------------------------------------------------------------------------------------------------------------------------------------------------GACTGGTGCCGAAGGATTCGGGCAAGATAATCGTGTGCAGTGAGCGCGAT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TCTGGGCCACAATGGTGCTGGAAAGACCACGATGATGAACATGATAATGGGTTAGAAT-----AGAAATA---------------------CAATTT-CTTTCTCG----------------GC---------CAACT-----------------AATATTTATA-----GTA---AATT---------TTTAGGATTGGTTCCGAAGGATTCGGGCAAGATAATGGTCTGCAGTGAGCGCGAC	Size	Hit Count	Total Norm	Total
No Reads

dm3

GCTGGGCCACAATGGAGCTGGAAAAACAACCATGATGAACATGATAATGGGTAGGGAC-----TCAAACT---------------------CAATTCGCTTCCTCG----------------GC---------CATCC-----------------AATGCACATG-----TTGATTCTCT---------TTCAGGATTGGTACCAAAGGATTCGGGCAAGATAATTGTGTGCAGTGAGCGCGAT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................................................................................................................TTCGGGCAAGATAATTGTGTGCAGT.........	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.......CACAATGGAGCTGGAAAAACAACCA....................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................GATTGGTACCAAAGGATTCGG.............................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TGGTACCAAAGGATTCGGGC...........................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........ACAATGGAGCTGGAAAAAC.........................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................................CAAAGGATTCGGGCAAGATAATTGTGT..............	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........AATGGAGCTGGAAAAACA........................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........ATGGAGCTGGAAAAACAAC......................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................AAGGATTCGGGCAAGAG......................	17	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GCTGGGCCACAATGGGGCTGGAAAAACTACCATGATGAACATGATAATGGGTAAGGAC-----TCAAACT---------------------CAATTCGCTTCCTCG----------------AC---------CACCC-----------------AATGCACATG-----TCAATTCTCT---------TTCAGGATTGGTACCAAAGGATTCGGGCAAGATAATTGTGTGCAGTGAGCGCGAT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................TACCATGATGAACATGATAATGGGA................................................................................................................................................................................................	25	1	8.00	8	0	0	0	0	0	0	4	4	0	0	0	0	0	0	0	0	0
.........................ACTACCATGATGAACATGATAATGGGA................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TTGGTACCAAAGGATTCGGGCAAGA.......................	25	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TTGGTACCAAAGGATTCGGGCAAGAT......................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................AGGATTCGGGCAAGATAATTGTGTG.............	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................AAGATAATTGTGTGCAGTGAGC.....	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................GATGAACATGATAATGGGA................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

GCTGGGCCACAATGGGGCTGGAAAAACTACCATGATGAACATGATAATGGGTAAGGAC-----TCAAACT---------------------CAATTCGCTTCCTCG----------------AC---------CACCC-----------------AATGCACATG-----TTGATTCTCT---------TTCAGGATTGGTACCAAAGGATTCGGGCAAGATAATTGTGTGCAGTGAGCGCGAT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................................................................................ATGCACATG-----TTGATTCTCT---------TTCA...................................................	23	1	1.00	1	1	0	0	0

droYak3

GCTGGGCCACAATGGTGCTGGAAAAACTACCATGATGAACATGATAATGGGTAGGGAA-----AA--ACT---------------------CAAATCGCTTCCTTG----------------AC---------CAACG-----------------AATGCTGACG-----TGCTTTCTCT---------TTTAGGATTGGTACCAAAGGATTCGGGAAAAATAATTGTGTGCAGTGAGCGCGAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................................................................................................................................AAAATAATTGTGTGCAGTGAGCGC...	24	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................AATGCTGACG-----TGCTTTCTCT---------TTTAG..................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................GTACCAAAGGATTCGGGAA..........................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......CACAATGGTGCTGGAAAAACTACCATG..................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................GATTCGGGAAAAATAATTGTGTGCAGTG........	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................GCTGGAAAAACTACCATGAT................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................GGTACCAAAGGATTCGGGAAA.........................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................GAAAAATAATTGTGTGCAGTGAGCGC...	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................GGTACCAAAGGATTCGGGAAAAAT......................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................AAAGGATTCGGGAAAAATAATTGTGTGC............	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................GTAGGGAA-----AA--ACT---------------------CAAATCGCTTCC.............................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................AATAATTGTGTGCAGTGAGC.....	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

GCTGGGCCACAATGGCGCTGGAAAAACAACCATGATGAATATGATAATGGGTAGGGAT--------------------------------------------------------------------------------------------------------------------------------------------AAGCTCAAAGAAGCTGG-----------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................ATATGATAATGGGTAGGGAT--------------------------------------------------------------------------------------------------------------------------------------------A.............................................	21	1	1.00	1	0	0	0	0	0	1	0
...........................AACCATGATGAATATGAT.......................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
..TGGGCCACAATGGCGCTGGAAAAACAACC.....................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
..................TGGAAAAACAACCATGATGAATATGA........................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0

dwi_1541

scf2_1100000004577:25038-25105 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-6.6	-6.4	-6.3