ID:

dwi_1503

 Coordinate:

scf2_1100000004558:1641844-1642017 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.9 -32.8 -32.6

Flybase annnotation

exon [dwil_GLEANR_5318:10]; exon [dwil_GLEANR_5318:11]; CDS [Dwil\GK22217-cds]; CDS [Dwil\GK22217-cds]; intron [Dwil\GK22217-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+
(CAG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AACCACCACCACCAAACCCATGGCCAAAACCACAATAAGCATAGGTGGTGGTAATGCTCCGGTGACAATGAACAATAGTAATCATAGCATTAATGTGGCCAATGCGGCGGCTGCCTATGAGGCGGCTGCTACCAAATCCTCATTGCCAATCAATAACAATGTCAACAACACCACCAATCACAACAACAACACAACAAACACACCACTAGCAGCAGCAGCAGCAGCAGCAGTAGCCACATCAACAACCACGCTGACTGTTAAGCAACTTGTACAG
****************************************************..((((..((((...((((((....))..)))).(((((.........)))))(((((((((((...)))))))))))..........(((((...........))))).......................................))))...))))((....)).****************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M020
head
 M045
female body
 V119
head
 V117
male body
....................................................AATGCTCCGGTGACAATGAAC......................................................................................................................................................................................................... 21 0 1 3.00 3 0 3 0 0 0
..................................................GTAATGCTCCGGTGACAATGAAC......................................................................................................................................................................................................... 23 0 1 2.00 2 0 2 0 0 0
...................................................................................................................................................................................................AAACACACCACTAGCAGCAGCAGCA...................................................... 25 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................................................................AACAACCACGCTGACTGT................ 18 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................CAACAACAACACAACAAACACACCACT................................................................... 27 0 1 1.00 1 0 0 1 0 0
.............................................................................................................................................................................................CACAACAAACACACCACTAGCAGC............................................................. 24 0 1 1.00 1 0 0 0 1 0
.........................................................................................TTAATGTGGCCAATGCGGCGG.................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
...............................ACAATAAGCATAGGTGGT................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................TGCTACCAAATCCTCATTGCCAATC........................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
............................................................................................ATGTGGCCAATGAGGCGGCGGC................................................................................................................................................................ 22 2 1 1.00 1 0 0 0 0 1
..................................................................................................................................................................CAACAACACCACCAATCACAACAACAACA................................................................................... 29 0 1 1.00 1 0 0 1 0 0
..................................................GTAATGCTCCGGTGACAAT............................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................................................ACAACCACGATGACTGTTAAG............ 21 1 1 1.00 1 0 0 0 1 0
.......................................................................................................................................................................................................................................................ACGCTGACTGTTAAGCAACT....... 20 0 1 1.00 1 0 1 0 0 0
.............................................................................................................................................................................................CACAACAAACACACCACTAGCAGCA............................................................ 25 0 1 1.00 1 0 0 0 0 1
........................................................................................................................GGCGGCTGCTACCAAATCCTCAT................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0
.....................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGTAGCCA...................................... 23 0 3 0.33 1 0 0 0 1 0
........................................................................................................................................................................................................................AGCAGCAGCAGCAGTAGCC....................................... 19 0 10 0.10 1 1 0 0 0 0
........................................................................................ATTATTGAGGCCAATGCCGC...................................................................................................................................................................... 20 3 15 0.07 1 0 0 1 0 0
..............................................................................................................................................................................................................TAGCAGCAGCAGCAGCAGCA................................................ 20 0 20 0.05 1 0 0 0 1 0
...............................................................................................TGGCCAATGGTGCGGCTG................................................................................................................................................................. 18 2 20 0.05 1 0 0 1 0 0
.....................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGTAGC........................................ 21 0 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TTGGTGGTGGTGGTTTGGGTACCGGTTTTGGTGTTATTCGTATCCACCACCATTACGAGGCCACTGTTACTTGTTATCATTAGTATCGTAATTACACCGGTTACGCCGCCGACGGATACTCCGCCGACGATGGTTTAGGAGTAACGGTTAGTTATTGTTACAGTTGTTGTGGTGGTTAGTGTTGTTGTTGTGTTGTTTGTGTGGTGATCGTCGTCGTCGTCGTCGTCGTCATCGGTGTAGTTGTTGGTGCGACTGACAATTCGTTGAACATGTC
******************************************************..((((..((((...((((((....))..)))).(((((.........)))))(((((((((((...)))))))))))..........(((((...........))))).......................................))))...))))((....)).**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 V118
embryo
 V119
head
...........................................................................................................................................................TGTTACAGTTGGCGTGGTG.................................................................................................... 19 2 1 1.00 1 1 0 0 0
..........................................................................................................................................................................................................GGTGATCGTCGTCGTCGTCGTCGT................................................ 24 0 6 0.83 5 5 0 0 0
....................................................................................................................................................................TGTTGTGGTGGTTAGGGGTG.......................................................................................... 20 2 3 0.33 1 0 1 0 0
...........................................................................................................................CCCACGATGGTTTAGGTG..................................................................................................................................... 18 2 6 0.17 1 0 0 1 0
..........................................................................................................................................................................................................GGTGATCGTCGTCGTCGTCGTCG................................................. 23 0 7 0.14 1 1 0 0 0
......................................................................................................................................................................................................................CGTCGTCGTCGTCGTCATCGG....................................... 21 0 8 0.13 1 1 0 0 0
..........................................................................................................................................................................................................GGTGATCGTCGTCGTCGTCGT................................................... 21 0 9 0.11 1 1 0 0 0
........GGTGGTCTGGGTACCGCTTC...................................................................................................................................................................................................................................................... 20 3 10 0.10 1 0 1 0 0
...........................................................................................................................................................................................................GTGATCGTCGTCGTCGTCGTCGT................................................ 23 0 10 0.10 1 1 0 0 0
........................................................................................................................................................................GCGGTGGTTAGTGCTGTT........................................................................................ 18 2 10 0.10 1 1 0 0 0
..................................................CATTAGGAGGCCGCCGTTA............................................................................................................................................................................................................. 19 3 11 0.09 1 0 1 0 0
.................................................CCATTAGGAGGCCGCCGTT.............................................................................................................................................................................................................. 19 3 12 0.08 1 0 1 0 0
........................................................................................................................................................................................................TTGGTGATCGTCGTCGTCGTCGTCGT................................................ 26 1 12 0.08 1 1 0 0 0
...GTCGGGGTGGTTTGGGTA............................................................................................................................................................................................................................................................. 18 2 15 0.07 1 1 0 0 0
...................................................................................................................................................................................................................................GTAATCGGGGTAGTCGTTGGT.......................... 21 3 19 0.05 1 0 1 0 0
...........................................................................................................................................................................................................ATGATCGTCGTCGTGGTCGTCGTCGT............................................. 26 2 20 0.05 1 1 0 0 0
.............................................................................................................................................................................................................GATCGTCGTCGTCGTCGTCGT................................................ 21 0 20 0.05 1 1 0 0 0
...............................................................................................................................................................AGAGTTGTTGTGCTGGTTC................................................................................................ 19 3 20 0.05 1 1 0 0 0
.................................................................................................................................................................AGTTGTTTTGGTGGTAATTG............................................................................................. 20 3 20 0.05 1 0 0 0 1
...ATAGTGGCGGTTTGGGTAC............................................................................................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004558:1641794-1642067 + dwi_1503 AACCA--CCACCACCAA--ACCCATGGCCAAAA----CCA-CAATAAGC-ATAGGTGGTGGTA---A-------------------------------------------------------------------------------------------------------------------------------------TGCTCCGGTGACA---ATGAACAATAGTAATCATAGC---ATT---AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGGCCAATGCGGCGGCTGCCTATGAGGCGGCTGCTACCAA-----ATCCT---------------CATTG-------------------------------------------------------------------------------------------------------------------------------CCAATC--AAT------AACAATGTC------------------------AACAA--------------------------------------CACCACCAATCACAACAACAACACAAC-----AAACAC-------------------------------------AC---------------------------CA--------CT---AG---CAGCA---------GCAGCAGC---A---GCAG------------------------CAGTAGCCACA-----------TCAA------------------------------------------CA---ACCACGCTGACTGTTA-AGCA-ACTTGTA--CAG
droVir3 scaffold_12875:1967227-1967504 + CGGCT----------AA--GCCCCTGGCCAAGA----CAA-CCATCAGT-ATTGGTGC---------------------------------------------AGCAACAGCAACAGCA--------------------------------------------------------A---------CAGC--------------------AACAGCAACTGGCAAC----------------------------------------------------------------ACAAAAGCTAGCAGCAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAACGCGGGCACAAATGTAGCCCACGCTGCTGCTGCCTACGAGGCGGCCACCA--A------GTC----------------------------------------------------------------------------------------CACATCCACT--------------------------------------------G------GCAATCTCAAC------AACAATGCC------------------------AGCGGCA--------------------------------------------A--------------------------------------------------------------TCACAACAACAACAG--------------------------------------CAACA---------GCAGCAAC---A---A------------------------CAC-AGCAGCAACA-----------GCAGCAG------------------------------------CAACA---ACAACGCTGACAGTTA-AGCA-ACTAGTG--CAG
droMoj3 scaffold_6496:23296352-23296643 - AACCA--TCAGTATTGG--AGCATCATC-AGTCAACGCCA-------------------------------------------------------ACAGCAACAG---CATCAA----------------------------------------------C----------AGCAG---------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGTAACAGT---------------------------------------AACACCAACAGCAACAGCAACAGCATTAATGGTGGCACAAATGTGGCGCATGCTGCAGCTGCCTACGAGGCGGCCACTA--A------G---------------------------------------------------------------------------------------------------------------------------------ACC------------AGCAGCTCCAATCTAAAC------AACAATGCC------------------------AGCAGCA--------------------------------------------ACCA--------------------------------------------------------CAACAA------CAACAG---------------------CAGCAGCA---TGA------C---------------------AGCAGCAGCCGCAGCGACAG---------CGCCAGCAGCAGCG-----------CCAG---------------------------------------CAACA---ACTACACTGACTGTTA-AGCA-GCTGGTG--CAG
droGri2 scaffold_14853:8397047-8397313 + CAACA--TCACCAACGT----------------------------------------------------------------------------AGCCAGCAGCAGCAACAGCAGCTGCAGCAGCGATGTGGAA-------------------------------------------------------------ATGCTGCTCGATGAGGATAG---------------------------------------------------------------------------------------------------------------------------------------------------CAAT---AGCAGCTTTGCGTCGGATG-T------ATC------------CAGCGACAGC---------------------------------------AACATAAGCAGTAG-------------------------------------------------------------------------------CAGCAGCAGCAGCAGTATTG-------------------------------------------------------------------------------------------------------------------------------------------------------CC------------------------AACAGCAACATTATC-----------ACCAACA-----------------------------------------------------------------------------------------GCAGCAGCGCTGGCAACACCAACATCCTCAGCA-----GCAGCGG---CAACAGCAGCAGCGGCAA---------------------CAG---------CAGCAGCAGCAACA-----------TCAG---------------------------------------CAGCA---GCAACAT-------------------CAG--CAG
dp5 2:9756172-9756467 - ACC-G--CCACCACCAC--AGCTGTGGC-AGGA----GGA-GCAACCGG-ATCAGTGGCGGTT---G-------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCCACAACCACAGCCGCAGAACATTACCCAGCGCATCCACATCTATCCGATGCAGCACCAG-------------------------------------------------------------------------------------CAGCAGCAGCAGCAGGCC--------------------------------------------------------------------------------------------------------------------------AACAA--------GCAGAAGCAGCAGCAGGCGCAG----GCTCAGC-----------AAAAGGCAG-TCGCC-----------ACGAACA----------------------------------------------------GCAGCAACATGCCGCAGCAATTGGCACAACAG-----------------------------------------------G------------AA------CAGC---A---G------------------------CAACAGTCGCA--------------GCAGCAGCAACAGTCCCAGCCA---------------------CAG-----------CTGAAGCTCA-AGGAGGCTCCTGC-CAT
droPer2 scaffold_82:107883-108188 - AC-CA--CAAAGACTAA--GTCCTGGAC-AAAC----TCCGC--GCAGC-ACAAGAAGTCCACGC----------------------------AGTCCG--------------------------------------TTT--------------CGGTGACGGCATCGCCC-----------------------------------AA-----------------------------CAA--TGTGAACAA-----------------TG-----GTCCAGGAGGAGCGGCAACAGCAGGCGGCAGTGG-----------------------------------------------------------------------------------------CA------------GTGGCGG---------------------------------------------------------CTTCAGCA--------------------------------------AA---------------------------------------------------------------------CCCGGCGGC----------------------------TA----------------------CAGTCATACCACAAAGACGTACA----------------------CCAATC--AGC------AGCATTACC------------------------AGCAGCAGCACTATCAGAATAATTATACGAA--------------------------------------------------------------------------------CAACAG---------CAG------------------CACC-----------AG---CAGCAATAG---------C---AGCA---GCAG---------CGGCGG------CGCCAACAATAGCA-----------GCAGTGGC------------------------------------AGCA---ACA--AT-------------------CAA--CAG
droAna3 scaffold_13266:5948864-5949131 + CATCA--CAACCACCAA--GCCCATGGCCAAGA----CCA-CCATCAGC-ATAGGTGGTGGTGCAAGTGCTCCAGCACCCACAGCCACTTT---GACGGTGA------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------GCAACTGGTGCAGCAGCAACATGCGCCTGT---------------------------------------------------------------------------------T------ATACA------------GCAGCAG---------------------------------------------------------CAGCAGCA--------------------------------------AA-TGGGTGGCA-------------------------------------------------------------------------------------------------A----------------------CAA-------------------------------------------------------------------------------------------------------AGTC-----------TCCATAA----------------------------------------------------GCAATAAGATGCAGCAGCAACAGATGCAACAGATGCAACAACAACAGAT-----------------------GC---AA---------C------------------A---ACAA---------CAGTTG------CAGCAACAA---CA-----------GATG---------------------------------------CAACAGCAACAGTTG-------------------CAA--CAG
droBip1 scf7180000395839:107366-107598 + CATCA--CAACCACCAA--GCCCATGGCCAAGA----CCA-CCATCAGC-ATAGGTGGTGCCACAAGTGCTCCAGCACCCACAGCCACGTT---GACGGTGA------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------GCAACTTGTGCAGCAGCAACATGCGCCTGT---------------------------------------------------------------------------------T------ATACA------------GCAGCAA---------------------------------------------------------CAGCAACA--------------------------------------AA-TGGGTGGCA-------------------------------------------------------------------------------------------------A----------------------CAA-------------------------------------------------------------------------------------------------------AGTC-----------TCCATCA----------------------------------------------------GCACTAAGATGCA---------GGCACAACAG-----------------------------------------------A------------TG------CAAC---A---ACAA---------CAGATG---------CAGCAACAACA-----------ATTG---------------------------------------CAGCA---GCAAC-----------------------------
droKik1 scf7180000302385:77249-77577 - AAACC----------AA--GCCCATGGCCAAGA----CCA-CGATCAGC-ATAGGTGGCGGAGGAGG------AGGAGCCCCAGCCACTCT---GACGGTGA------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------GCAACTAGTGCAGCAGCAACATGCACCTGT---------------------------------------------------------------------------------T------ATCCA------------GCAACAG---------------------------------------------------------CAGCAGCA--------------------------------------GC-TGGGCAGCA--------AGCAACCCCA----------A---ACAGTG-------------------GC-------------------------------------CA----------------AG--------------------------------ATGCTG--------------CCT--CAA------AGCAATGTCAGCAACATCAATGTCAATGCC---AACAACA--------------------------------------------------------AGGTAAT-----GAGT-----------------------------------CCCCAGGTGCTGGGTCGCATTCCCAACCACCATCACC-----------AG---CAGCA---------------------------------------------------GCAGCAG---CA-----------GCAG------CAATCGAATCCGAATCAGAAGCTCATAGCCACCCAGCA---GCAGATC-------------------CTG--CAG
droFic1 scf7180000453438:40909-41195 - ACCAG--CAGCAACCAC--AGCAACAGC---------------------------------------------------------------------------------------------AACAAATTCAAGAGCAG-CTGGGAGAACTCCTAAAGCAAC----------AGCAGCAGCAACAGCAGCAAACTCAGCA--------ACGAC----------------------------A------------------------------------ACAACAATTGCAACAGCAACTGTGGC-AAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAACCAC-----AA---CAG------------CAGGA-------------------------TCAG-------------------------------CAGAAAGA----------TGACCA----------------------------------GCAGCAACC------ACAGGAAC------AGCAAC------------------------AAATT----------------------------------------------------------------------------------------------------------CAACCACAGCAACAGCAACAAAT-----------------------TC---AG---------AAG---------C---AGCA------G------------CAGCAGCAACAGCAGCAAACACA-----------GCAACGAC------------------------------------AACA---ACAATTG------CAACAGGA-GCTGGGA--CAA
droEle1 scf7180000490564:2483304-2483533 - GCCA--------------------------AAA----CCA-GCAGCGGC-AA--------------------------------------------------------CATC---------GACC---------------------------------------------------------------------------------GA-----------------------------CGA--CGACGATAG-----------------TT-----GT--------------C------------------------------------------------------------------------------------------------------------GCAGCATCAACAGCAACAGC---------------------------------------AGCACCAG-------------------------------------------------------------------------------------CGGCAGCAGCAACAGTTT--------------------------------------------------------------------------------------------------------------------------GTCTA--------ATAGTTGCATTAACAATCATAACAACACTCATTATAAAAACAGT-----------------------------AA------------------------------------AA-ACACCAGACAC-------------------------------------ACCACTTGTA-----------------------------GT---GGT------------------AGCAGCAACA---GCAG------------CAGCAG---CAACAACAACA--------------ACTA------------CAT------------------------TGGTA---ATTACAA-------------------TTGCAAAA
droRho1 scf7180000778255:11004-11260 + AAACA--CAACTTCCAGCAGCCAACAATCAAAA----TCA-C---------------------------------------------------------------------------------------------------------------------------------AGCAACAATAGTAGCAATAAATTTTGTTATCCTACGGCGGCGGCCATGGAGAATATGTTCCAGAAC---AAT---CA---G-AT------------------------------GGC----------------GGCCGCCGCCGCCGCACGTGAATCGCTGCTGAATTCTTATCTGTATCAGAAAGAAGGCGATCCCGGCAGCTATATGTCGGAGCAGAGCTACTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAG-----------------------------------------------C------------------AGCAGC---A---A------------------------CAACAGCAGCATCA-----------ACAA---------------------------------------CAACA---GCAACAT-------------------CAA--CAG
droBia1 scf7180000302428:8079098-8079405 - AACCA--CAGCTTCCAGCAACCAACAATCAAAA----TCA-C---------------------------------------------------------------------------------------------------------------------------------AGCAACAATAGTAGCAATAAATTTTGTTATCCTTCGGCGGCGGCCATGGAGAATATGTTCCAGAGC---AAT---CA---G-AT------------------------------GGC----------------GGCCGCCGCCGCAGCTCGGGAATCCCTGCTTAACTCCTATCTGTATCAGAAGGAAGGCGAA---GCCAACTACATGTCGGAGCAGAGCTACTGGCAGCAGCAGCAACAGCAACAAC---------------------------------------AGCACCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA-----------------------------------------------------------------GCAGCAACAC---------------CA--------CC---AG---CAGCA---------GCAACATC---A---ACAG---------------------C---AGCAGCAACA-----------CCAACAG------------------------------------CAGCA---GCAACTC-------------------CAA--CAG
droTak1 scf7180000415765:359182-359459 + GGCCA--GCACTACCAGAGTCCCAACAGC--------------------------------------------------------------------------AGC-----------------------------------------------------------------AGCAGCAACAGCAGCAGCAGCGGCAGCAATTCTGCAGCAGCAACCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCAG-------------------------------------------------------------------------------------TAGCAATAGCAATAGCTATGCCAACAG------T-------CCGCTCAGCCCGCTCACACCCAATCCTACTACGGTAG--CTGAA-----------AGGAATCA--------------------------------------------CAGTC--ATC--------------------------------------------------------------------AGCAGCAGCAGCAACACAACCAGCAACA-----------------------------------------------------------------GCAGCAACAC---------------AA--------CC---AG---CAGCA---------GCAGCAGC---A---A------------------------CACCAGCAGCAACATCATACCCAGCACCA---------------------------------------CGACA---ACAGCAA-------------------TAG--CAG
droEug1 scf7180000409466:526148-526382 - AGCAACTCTGTTGCCGC--AGCAATCGCCAAAT-A--CCA-C-AACAGCAACAGGC-------------------------------------AACCTG-------------------------------------------------------------C----------AGCAG-----------------------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCAGCAGC---------------------------------------ATCATCAGCAGCAA-------------------------------------------------------------------------------TACCAGCAGCA-------------------------------------------------------------------------------------------------------------------------------TCAGCAACT------------------TCTGTCGC------------------------AGCAG------CAAC-----------TCCTGTC-----------------------------------------------------------------------------------------GCAGCAGCAACAGCAATATCAGCAGCCGCAGCA-----GCAACAG---CAGCACTTCCAGC---------A------G------CAACAG---------CACTTGCAGCAGCA-----------GCAG---------------------------------------CAGCAGCAACAGCAC-------------------GCA--CAG
dm3 chr3L:5264636-5264886 - CC--G--CCACCAGCAA--CAACAACAACAACA----CCA-CCACCACC-ACAGGAAGCCG---------------------------------------------------------------------------------------------------C----------AGCGGCAGCAACAACAACAAGTGTTGC---------------------------------CGGGAC---AAC---AG---GAAC------------------------------AGCAGTCGCAGCAAAGGCTAGC---------------------------------------------------------------------------------A------A-------------------------------------------------------------------------------------------------------------------------------------------------------AACCA---------------CAAGC------------------------------------------------------------------------------------------------------AGAACAAGCAGCAGCAGCA------------GCAGC------AGCAGCGAC------------------------AGCAG----------------------------------------------------------------------------------------------------------CAACATAAACAGCAGCAGCAAAA-----------------------GC---GG------CAACAGCAGCAGCGGCAG---------------------------------CAGCAGCAGCAGTA-----------ACTGCAAC------------------AG---------------CAACA---CCTGCAA-------------------CAG--CAG
droSim2 x:5371781-5372052 + GGTGA--CCACACCGAA--AGCAGTGG----------ACA-CCACAAG-------------------TTCACAGGCGCCGGCAACAACCACGCGGCCAA--------------------------------------------------------------------------CAACAACGGTTAGAACC---------------------------------------------------------------------------------------------------ACCACGATTACCACCACC------------------------------------------------------------------------------------------------ACTACAACAGCAACAAC---------------------------------------TACGCCCAAAACGG------------------------------------------------------------A--------AG--------AGACAACAACA---ACAACG-------------------AC-------------------------------------CA----------------AGAAACCA--------------------------------------------GAGCC--AAC--------------------------------------------------------------------AACCATGGTGG---CACCACGAA-----------------------------------------------------------CAACAAAAACATCAGCAACCGAA-----------------------GC---GG---------CAG---------C---AGCA------G------------CAGCAGCAGCAGCAACTAGCACA-----------ACAA---------------------------------------CAGCA---GCAACTT-------------------CCG--CTG
droSec2 scaffold_1:10762512-10762800 + CACAA--CAACTGCCAA--TCCGGCGGC---------------------------------------------------------------------------GGCGGCAGCAGCAGCA--------------------------------------------------------G---------CAGCAACAGCAGC--------------------CGG----------------CTA--CAACGGCA---CCAGCAACTTGATAATCATCGAGC--------------C------------------------------------------------------------------------------------------------------------GCAGCAGCAACAGCAACAGC---------------------------------------CGC---AG-------------------------------------------------------------------------------------CAGCAGCAGCAACAGTTC--------------------------------------------------------------------------------------------------------------------------AGCTACC------ACAGCAACAGCAGCAATAACAACTACTACCACAGCAATGGCAGC-----------------------------AA------------------------------------GC-AGGCAGCACACGCCAGCAACATGT------------------------ATCAACAGCAGC--------------------------------AGCAG---CATCAG------------CAACA------G------------CAGCAGCAACATCAGCAGCATCT-----------GCAG---------------------------------------CATCA---GCAACAC-------------------GCG--CAG
droYak3 2R:17364486-17364764 - AACAG--CAACAACCAC--AACAGCAAC---------------------------------------------------------------------------------------------AGCCACTTCCAAGTCCTGC--------------CAGCGACAGCCGAGCCT------------AA---------------CGATC--------------------------------------------------------------------------------------------------CAAG---------------------------------------------------------------------------------T------GA---ACAACAACAACAGCAATAAC---------------------------------------AGCACTAA-------------------------------------------------------------------------------------------------CGGTACTA---GTAACGGCAATCGGGT--CTCGGTGGC------------------------------------TTCGCCCACT-AGC----------------------ATCGTGAACAACAACAACGGCGTGT------GCGTTGTC------AACTGC------------------------AGCTA--------------------------------------CACCCCCAGCAGCAG-----------------------------------------------------CAACAA---------CAA------------------CAAC-----------AA---CAACAACAG---------C---AGCA---GCAG---------CAGCTG------CATCAGCAA---CA-----------CCAC---------------------------------------CAACA---GCAACAT-------------------CAG--CAA
droEre2 scaffold_4784:9686359-9686675 + AACCA--CAACTTCCAGCAGCCAACAATCAAAA----TCA-C---------------------------------------------------------------------------------------------------------------------------------AGCAACAATAGTAGCAATAAATTTTGTTATCCTACGGCGGCAGCCATGGAGAATATGTTCCAAAAC---AAT---CA---G-AT------------------------------GGC----------------GGCCGCTGCCGCCGCACGCGAATCCCTGCTGAATTCCTATCTCTATCAAAAAGATAGCGATGCCAGCAATTACATGTCGGAGCAGAGCTATTGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAC---CACCACCAGCAGCAG-----------------------------------------------------CA---------GCAGCAA---------CATCAACAACACCA-----GCAGCAGCAG---CATCAA------------C---A---GCAG------------CAACAG---CAACATCAACA--------------TCAA---------------------------------------CAGCA---GCAACAC----------------CAGCAG--CAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AACCA--CCACCACCAA--ACCCATGGCCAAAA----CCA-CAATAAGC-ATAGGTGGTGGTA---A-------------------------------------------------------------------------------------------------------------------------------------TGCTCCGGTGACA---ATGAACAATAGTAATCATAGC---ATT---AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGGCCAATGCGGCGGCTGCCTATGAGGCGGCTGCTACCAA-----ATCCT---------------CATTG-------------------------------------------------------------------------------------------------------------------------------CCAATC--AAT------AACAATGTC------------------------AACAA--------------------------------------CACCACCAATCACAACAACAACACAAC-----AAACAC-------------------------------------AC---------------------------CA--------CT---AG---CAGCA---------GCAGCAGC---A---GCAG------------------------CAGTAGCCACA-----------TCAA------------------------------------------CA---ACCACGCTGACTGTTA-AGCA-ACTTGTA--CAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................A---A-------------------------------------------------------------------------------------------------------------------------------------TGCTCCGGTGACA---ATGAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00330000
............................................................GTA---A-------------------------------------------------------------------------------------------------------------------------------------TGCTCCGGTGACA---ATGAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00220000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAC-------------------------------------AC---------------------------CA--------CT---AG---CAGCA---------GCAGCA................................................................................................................................................2511.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------------------------------CA---ACCACGCTGACTGT....................1811.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACACAAC-----AAACAC-------------------------------------AC---------------------------CA--------CT---.........................................................................................................................................................................2711.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAC-----AAACAC-------------------------------------AC---------------------------CA--------CT---AG---CAGC................................................................................................................................................................2411.00100001
.................................................................................................................................................................................................................................................TT---AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGGCCAATGCGGCGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.......................................A-CAATAAGC-ATAGGTGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTACCAA-----ATCCT---------------CATTG-------------------------------------------------------------------------------------------------------------------------------CCAATC--.....................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------------AACAA--------------------------------------CACCACCAATCACAACAACAACA.........................................................................................................................................................................................................................................................................2911.00101000
............................................................GTA---A-------------------------------------------------------------------------------------------------------------------------------------TGCTCCGGTGACA---AT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCTGACTGTTA-AGCA-ACT.........2011.00110000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAC-----AAACAC-------------------------------------AC---------------------------CA--------CT---AG---CAGCA---------......................................................................................................................................................2511.00100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGCTGCTACCAA-----ATCCT---------------CAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------GCAGCAGC---A---GCAG------------------------CAGTAGCCA..................................................................................................2330.33100001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC---A---GCAG------------------------CAGTAGCC...................................................................................................19100.10100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---AG---CAGCA---------GCAGCAGC---A---GCA....................................................................................................................................20200.05100001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------GCAGCAGC---A---GCAG------------------------CAGTAGC....................................................................................................21200.05100010
droVir3
CGGCT----------AA--GCCCCTGGCCAAGA----CAA-CCATCAGT-ATTGGTGC---------------------------------------------AGCAACAGCAACAGCA--------------------------------------------------------A---------CAGC--------------------AACAGCAACTGGCAAC----------------------------------------------------------------ACAAAAGCTAGCAGCAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAACGCGGGCACAAATGTAGCCCACGCTGCTGCTGCCTACGAGGCGGCCACCA--A------GTC----------------------------------------------------------------------------------------CACATCCACT--------------------------------------------G------GCAATCTCAAC------AACAATGCC------------------------AGCGGCA--------------------------------------------A--------------------------------------------------------------TCACAACAACAACAG--------------------------------------CAACA---------GCAGCAAC---A---A------------------------CAC-AGCAGCAACA-----------GCAGCAG------------------------------------CAACA---ACAACGCTGACAGTTA-AGCA-ACTAGTG--CAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATGCC------------------------AGCGGCA--------------------------------------------A--------------------------------------------------------------TCAC.....................................................................................................................................................................................................................1912.002001000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................CAACTGGCAAC----------------------------------------------------------------ACAAAAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000000000000000000002000000000000000000000000000000000
...............................GA----CAA-CCATCAGT-ATTGGTGC---------------------------------------------AGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000010000000000000000000000000000
.............................................CAGT-ATTGGTGC---------------------------------------------AGCAACAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCAAC------AACAATGCC------------------------AGCGG......................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................GGCAAC----------------------------------------------------------------ACAAAAGCTAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
CGGCT----------AA--GCCCCTGGCCAAGA----C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCTCAAC------AACAATGCC------------------------AGC........................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCTCAAC------AACAATGCC------------------------AGC........................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTGCTGCCTACGAGGCGGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000010000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAACGCGGGCACAAATGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................TGGCAAC----------------------------------------------------------------ACAAAAGCTAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATCTCAAC------AACAATGCC------------------------AGCGGC.....................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGGCGGCCACCA--A------GTC----------------------------------------------------------------------------------------CACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000001000000000000000000000000000000000000000000
............................................TCAGT-ATTGGTGC---------------------------------------------AGCAACAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................................................................................TAGCAGCAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAACGCGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------------------------A--------------------------------------------------------------TCACAACAACAACAG--------------------------------------CAACA---------......................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAACGCGGGCACAAATGTAGCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................CAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAACGCGGGCACAAATGTAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................AACAGCAACTGGCAAC----------------------------------------------------------------ACAAAAGCTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000010000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------------------------------------------TCACAACAACAACAG--------------------------------------CAACA---------GC....................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------------------------A--------------------------------------------------------------TCACAACAACAACAG--------------------------------------CAAC................................................................................................................................................................2120.501000000000000000000000000000000000000000100000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAC---A---A------------------------CAC-AGCAGCA...................................................................................................2020.501001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-----------GCAGCAG------------------------------------CAACA---ACAACGC...........................2180.252000000000000000000000000000001000000100000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAACAACAACAG--------------------------------------CAACA---------GCAGCA................................................................................................................................................2560.171001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG--------------------------------------CAACA---------GCAGCAAC---A---.......................................................................................................................................19200.102002000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG--------------------------------------CAACA---------GCAGCAAC---A---A------------------------CA............................................................................................................19200.102000000000000000000000000000002000000000000000000000000000000000
................................................................................................................AACAGCA--------------------------------------------------------A---------CAGC--------------------AACAGCAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000000000000002000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAG--------------------------------------CAACA---------GCAGCAA...............................................................................................................................................20200.102000000000000002000000000000000000000000000000000000000000000000
.......................................................TGC---------------------------------------------AGCAACAGCAACAGCA--------------------------------------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAG--------------------------------------CAACA---------GCAGCAAC---A---.......................................................................................................................................20200.051000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACA-----------GCAGCAG------------------------------------CAACA---AC................................21200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................GCAACAGCAACAGCA--------------------------------------------------------A---------CAGC--------------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000010000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAG--------------------------------------CAACA---------GCAGC.................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAG--------------------------------------CAACA---------GCAGCA................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA-----------GCAGCAG------------------------------------CAACA---ACAAC.............................20200.051000000000000000010000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAG--------------------------------------CAACA---------GCAGCAAC---A---.......................................................................................................................................21200.051000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................ACAGCAACAGCA--------------------------------------------------------A---------CAGC--------------------AACAGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000000000000000000001000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAC-AGCAGCAACA-----------GCAGCAG------------------------------------..........................................20200.051000000000000000000000010000000000000000000000000000000000000000
................................................................................................................AACAGCA--------------------------------------------------------A---------CAGC--------------------AACAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................CAACAGCAACAGCA--------------------------------------------------------A---------CAGC--------------------AACAGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000001000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAG--------------------------------------CAACA---------GCAGCAAC---A---A------------------------C.............................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................AACAGCAACAGCA--------------------------------------------------------A---------CAGC--------------------AAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAG--------------------------------------CAACA---------GCAGCAAC---A---A------------------------C.............................................................................................................22200.051000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAG--------------------------------------CAACA---------GCAGCAAC---A---.......................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................AGCAACAGCAACAGCA--------------------------------------------------------A---------CA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACA-----------GCAGCAG------------------------------------CAACA---ACA...............................22200.051000000000000000000000000000000000000010000000000000000000000000
................................................................................................................AACAGCA--------------------------------------------------------A---------CAGC--------------------AACAGCAACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000100000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAACAACAACAG--------------------------------------CAACA---------......................................................................................................................................................19200.051000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAG--------------------------------------CAACA---------GCAGCAAC---...........................................................................................................................................22200.051000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAG--------------------------------------CAACA---------GCAGCAAC---...........................................................................................................................................23200.051000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................GCAACAGCA--------------------------------------------------------A---------CAGC--------------------AACAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-AGCAGCAACA-----------GCAGCAG------------------------------------CA........................................20200.051000000000000001000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAG--------------------------------------CAACA---------GCAGC.................................................................................................................................................21200.051000000000000000000100000000000000000000000000000000000000000000
droMoj3
AACCA--TCAGTATTGG--AGCATCATC-AGTCAACGCCA-------------------------------------------------------ACAGCAACAG---CATCAA----------------------------------------------C----------AGCAG---------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGTAACAGT---------------------------------------AACACCAACAGCAACAGCAACAGCATTAATGGTGGCACAAATGTGGCGCATGCTGCAGCTGCCTACGAGGCGGCCACTA--A------G---------------------------------------------------------------------------------------------------------------------------------ACC------------AGCAGCTCCAATCTAAAC------AACAATGCC------------------------AGCAGCA--------------------------------------------ACCA--------------------------------------------------------CAACAA------CAACAG---------------------CAGCAGCA---TGA------C---------------------AGCAGCAGCCGCAGCGACAG---------CGCCAGCAGCAGCG-----------CCAG---------------------------------------CAACA---ACTACACTGACTGTTA-AGCA-GCTGGTG--CAGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---------------------------------------CAACA---ACTACACTGACT......................1911.001000010
...............................................................................................................CAA----------------------------------------------C----------AGCAG---------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGTAACAGT---------------------------------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACC------------AGCAGCTCCAATCTAAAC------............................................................................................................................................................................................................................................................................................................................................................................2111.001000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAACAGCATTAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..................................................................................................GCAACAG---CATCAA----------------------------------------------C----------AGCAG---------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.201000001
....................................................................................................AACAG---CATCAA----------------------------------------------C----------AGCAG---------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.091100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA--------------------------------------------ACCA--------------------------------------------------------CAACAA------CAACA...........................................................................................................................................................................................................21140.071000010
.......................................................................................................AG---CATCAA----------------------------------------------C----------AGCAG---------C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAACAGCAACAGCAACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
droGri2
CAACA--TCACCAACGT----------------------------------------------------------------------------AGCCAGCAGCAGCAACAGCAGCTGCAGCAGCGATGTGGAA-------------------------------------------------------------ATGCTGCTCGATGAGGATAG---------------------------------------------------------------------------------------------------------------------------------------------------CAAT---AGCAGCTTTGCGTCGGATG-T------ATC------------CAGCGACAGC---------------------------------------AACATAAGCAGTAG-------------------------------------------------------------------------------CAGCAGCAGCAGCAGTATTG-------------------------------------------------------------------------------------------------------------------------------------------------------CC------------------------AACAGCAACATTATC-----------ACCAACA-----------------------------------------------------------------------------------------GCAGCAGCGCTGGCAACACCAACATCCTCAGCA-----GCAGCGG---CAACAGCAGCAGCGGCAA---------------------CAG---------CAGCAGCAGCAACA-----------TCAG---------------------------------------CAGCA---GCAACAT-------------------CAG--CAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACATCCTCAGCA-----GCAGCGG---CA...............................................................................................................................................................2411.00101
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTATTG-------------------------------------------------------------------------------------------------------------------------------------------------------CC------------------------AACAGCAACATTATC-----------AC...............................................................................................................................................................................................................................................................................................................2811.00110
........................................................................................................GCAACAGCAGCTGCAGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.15330
........................................................................................................GCAACAGCAGCTGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.15330
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGG---CAACAGCAGCAGCG...................................................................................................................................................1970.14110
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA---------------------CAG---------CAGCAGCAGCAACA-----------TC...................................................................................23100.10110
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA---------------------CAG---------CAGCAGCAGCAACA-----------.....................................................................................21200.10220
.......................................................................................................AGCAACAGCAGCTGCAGCAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.07110
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACA-----------TCAG---------------------------------------CAGCA---GCAACA............................22200.05110
dp5
ACC-G--CCACCACCAC--AGCTGTGGC-AGGA----GGA-GCAACCGG-ATCAGTGGCGGTT---G-------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCCACAACCACAGCCGCAGAACATTACCCAGCGCATCCACATCTATCCGATGCAGCACCAG-------------------------------------------------------------------------------------CAGCAGCAGCAGCAGGCC--------------------------------------------------------------------------------------------------------------------------AACAA--------GCAGAAGCAGCAGCAGGCGCAG----GCTCAGC-----------AAAAGGCAG-TCGCC-----------ACGAACA----------------------------------------------------GCAGCAACATGCCGCAGCAATTGGCACAACAG-----------------------------------------------G------------AA------CAGC---A---G------------------------CAACAGTCGCA--------------GCAGCAGCAACAGTCCCAGCCA---------------------CAG-----------CTGAAGCTCA-AGGAGGCTCCTGC-CATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---A---G------------------------CAACAGTCGCA--------------GCAGCAGCA............................................................................2411.0010000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGGCC--------------------------------------------------------------------------------------------------------------------------AACAA--------GCA....................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATGCAGCACCAG-------------------------------------------------------------------------------------CAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCACCAG-------------------------------------------------------------------------------------CAGCAGCAGCAGCAGGCC--------------------------------------------------------------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--------------------------------------------------------------------------------------------------------------------------AACAA--------GCAGAAGCAGCAGCAGGC.....................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------------------CAACAGTCGCA--------------GCAGCAG..............................................................................1920.5010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---A---G------------------------CAACAGTCGCA--------------GCA..................................................................................2030.3310000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--------------GCAGCAGCAACAGTCCC....................................................................1940.2510010000000
droPer2
AC-CA--CAAAGACTAA--GTCCTGGAC-AAAC----TCCGC--GCAGC-ACAAGAAGTCCACGC----------------------------AGTCCG--------------------------------------TTT--------------CGGTGACGGCATCGCCC-----------------------------------AA-----------------------------CAA--TGTGAACAA-----------------TG-----GTCCAGGAGGAGCGGCAACAGCAGGCGGCAGTGG-----------------------------------------------------------------------------------------CA------------GTGGCGG---------------------------------------------------------CTTCAGCA--------------------------------------AA---------------------------------------------------------------------CCCGGCGGC----------------------------TA----------------------CAGTCATACCACAAAGACGTACA----------------------CCAATC--AGC------AGCATTACC------------------------AGCAGCAGCACTATCAGAATAATTATACGAA--------------------------------------------------------------------------------CAACAG---------CAG------------------CACC-----------AG---CAGCAATAG---------C---AGCA---GCAG---------CGGCGG------CGCCAACAATAGCA-----------GCAGTGGC------------------------------------AGCA---ACA--AT-------------------CAA--CAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.C-CA--CAAAGACTAA--GTCCTGGAC-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003300000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAG---------C---AGCA---GCAG---------CGGCG.....................................................................................................................1912.002200000
....................TCCTGGAC-AAAC----TCCGC--GCAGC-AC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
.......CAAAGACTAA--GTCCTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
...............................................GC-ACAAGAAGTCCACGC----------------------------AGTCCG--------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
.............CTAA--GTCCTGGAC-AAAC----TCC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.............CTAA--GTCCTGGAC-AAAC----T..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.....................................................................................................................................................................................................................................................GAACAA-----------------TG-----GTCCAGGAGGAGCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCACTATCAGAAT.......................................................................................................................................................................................................................................................................................................................1811.001001000
.....................CCTGGAC-AAAC----TCCGC--GCAGC-ACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCATACCACAAAGACGTACA----------------------CCA..........................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
droAna3
CATCA--CAACCACCAA--GCCCATGGCCAAGA----CCA-CCATCAGC-ATAGGTGGTGGTGCAAGTGCTCCAGCACCCACAGCCACTTT---GACGGTGA------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------GCAACTGGTGCAGCAGCAACATGCGCCTGT---------------------------------------------------------------------------------T------ATACA------------GCAGCAG---------------------------------------------------------CAGCAGCA--------------------------------------AA-TGGGTGGCA-------------------------------------------------------------------------------------------------A----------------------CAA-------------------------------------------------------------------------------------------------------AGTC-----------TCCATAA----------------------------------------------------GCAATAAGATGCAGCAGCAACAGATGCAACAGATGCAACAACAACAGAT-----------------------GC---AA---------C------------------A---ACAA---------CAGTTG------CAGCAACAA---CA-----------GATG---------------------------------------CAACAGCAACAGTTG-------------------CAA--CAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................CCACAGCCACTTT---GACGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.................................................................................................................................................................................................................................................................................................................GT---------------------------------------------------------------------------------T------ATACA------------GCAGCAG---------------------------------------------------------CAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
..........................................................................GCACCCACAGCCACTTT---GACGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-------------------------------------------------------------------------------------------------------AGTC-----------TCCATAA----------------------------------------------------GCAATAAGATGC..........................................................................................................................................................................................................................................2611.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA--------------------------------------AA-TGGGTGGCA-------------------------------------------------------------------------------------------------A----------------------CAA-------------------------------------------------------------------------------------------------------AGT.............................................................................................................................................................................................................................................................................................................................2411.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGATGCAACAGAT....................................................................................................................................................................................................................2411.001010000
.......................................................................................CTTT---GACGGTGA------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------GCAACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGATGCAGCAGCAACAGATGC...........................................................................................................................................................................................................................2311.001001000
.......................ATGGCCAAGA----CCA-CCATCAGC-ATAGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000
...............................................................................................................................................................................................................................................................................................................................................................................................................A------------GCAGCAG---------------------------------------------------------CAGCAGCA--------------------------------------AA-TGGGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
............................................................................................................................................................................................................................................................................................GTGCAGCAGCAACATGCGCCTGT---------------------------------------------------------------------------------T------ATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTC-----------TCCATAA----------------------------------------------------GCAATAAGATGCAGCAGC....................................................................................................................................................................................................................................2811.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAGCAACAGATGC...........................................................................................................................................................................................................................1840.251010000
............................................................................................................................................................................................................................................................................................................................................................................................................TACA------------GCAGCAG---------------------------------------------------------CAGCAGCA--------------------------------------A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2060.171000001
...............................................................................................................................................................................................................................................................................................................................................................................................................A------------GCAGCAG---------------------------------------------------------CAGCAGCA--------------------------------------AA-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051100000
droBip1
CATCA--CAACCACCAA--GCCCATGGCCAAGA----CCA-CCATCAGC-ATAGGTGGTGCCACAAGTGCTCCAGCACCCACAGCCACGTT---GACGGTGA------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------GCAACTTGTGCAGCAGCAACATGCGCCTGT---------------------------------------------------------------------------------T------ATACA------------GCAGCAA---------------------------------------------------------CAGCAACA--------------------------------------AA-TGGGTGGCA-------------------------------------------------------------------------------------------------A----------------------CAA-------------------------------------------------------------------------------------------------------AGTC-----------TCCATCA----------------------------------------------------GCACTAAGATGCA---------GGCACAACAG-----------------------------------------------A------------TG------CAAC---A---ACAA---------CAGATG---------CAGCAACAACA-----------ATTG---------------------------------------CAGCA---GCAAC-----------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AAACC----------AA--GCCCATGGCCAAGA----CCA-CGATCAGC-ATAGGTGGCGGAGGAGG------AGGAGCCCCAGCCACTCT---GACGGTGA------------------------------------------------------------------------------------------------------------------------------------------A------------------------------------GCAACTAGTGCAGCAGCAACATGCACCTGT---------------------------------------------------------------------------------T------ATCCA------------GCAACAG---------------------------------------------------------CAGCAGCA--------------------------------------GC-TGGGCAGCA--------AGCAACCCCA----------A---ACAGTG-------------------GC-------------------------------------CA----------------AG--------------------------------ATGCTG--------------CCT--CAA------AGCAATGTCAGCAACATCAATGTCAATGCC---AACAACA--------------------------------------------------------AGGTAAT-----GAGT-----------------------------------CCCCAGGTGCTGGGTCGCATTCCCAACCACCATCACC-----------AG---CAGCA---------------------------------------------------GCAGCAG---CA-----------GCAG------CAATCGAATCCGAATCAGAAGCTCATAGCCACCCAGCA---GCAGATC-------------------CTG--CAGSizeHit CountTotal NormTotal
No Reads
droFic1
ACCAG--CAGCAACCAC--AGCAACAGC---------------------------------------------------------------------------------------------AACAAATTCAAGAGCAG-CTGGGAGAACTCCTAAAGCAAC----------AGCAGCAGCAACAGCAGCAAACTCAGCA--------ACGAC----------------------------A------------------------------------ACAACAATTGCAACAGCAACTGTGGC-AAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACAACCAC-----AA---CAG------------CAGGA-------------------------TCAG-------------------------------CAGAAAGA----------TGACCA----------------------------------GCAGCAACC------ACAGGAAC------AGCAAC------------------------AAATT----------------------------------------------------------------------------------------------------------CAACCACAGCAACAGCAACAAAT-----------------------TC---AG---------AAG---------C---AGCA------G------------CAGCAGCAACAGCAGCAAACACA-----------GCAACGAC------------------------------------AACA---ACAATTG------CAACAGGA-GCTGGGA--CAASizeHit CountTotal NormTotal
No Reads
droEle1
GCCA--------------------------AAA----CCA-GCAGCGGC-AA--------------------------------------------------------CATC---------GACC---------------------------------------------------------------------------------GA-----------------------------CGA--CGACGATAG-----------------TT-----GT--------------C------------------------------------------------------------------------------------------------------------GCAGCATCAACAGCAACAGC---------------------------------------AGCACCAG-------------------------------------------------------------------------------------CGGCAGCAGCAACAGTTT--------------------------------------------------------------------------------------------------------------------------GTCTA--------ATAGTTGCATTAACAATCATAACAACACTCATTATAAAAACAGT-----------------------------AA------------------------------------AA-ACACCAGACAC-------------------------------------ACCACTTGTA-----------------------------GT---GGT------------------AGCAGCAACA---GCAG------------CAGCAG---CAACAACAACA--------------ACTA------------CAT------------------------TGGTA---ATTACAA-------------------TTGCAAAASizeHit CountTotal NormTotal
No Reads
droRho1
AAACA--CAACTTCCAGCAGCCAACAATCAAAA----TCA-C---------------------------------------------------------------------------------------------------------------------------------AGCAACAATAGTAGCAATAAATTTTGTTATCCTACGGCGGCGGCCATGGAGAATATGTTCCAGAAC---AAT---CA---G-AT------------------------------GGC----------------GGCCGCCGCCGCCGCACGTGAATCGCTGCTGAATTCTTATCTGTATCAGAAAGAAGGCGATCCCGGCAGCTATATGTCGGAGCAGAGCTACTGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAG-----------------------------------------------C------------------AGCAGC---A---A------------------------CAACAGCAGCATCA-----------ACAA---------------------------------------CAACA---GCAACAT-------------------CAA--CAGSizeHit CountTotal NormTotal
No Reads
droBia1
AACCA--CAGCTTCCAGCAACCAACAATCAAAA----TCA-C---------------------------------------------------------------------------------------------------------------------------------AGCAACAATAGTAGCAATAAATTTTGTTATCCTTCGGCGGCGGCCATGGAGAATATGTTCCAGAGC---AAT---CA---G-AT------------------------------GGC----------------GGCCGCCGCCGCAGCTCGGGAATCCCTGCTTAACTCCTATCTGTATCAGAAGGAAGGCGAA---GCCAACTACATGTCGGAGCAGAGCTACTGGCAGCAGCAGCAACAGCAACAAC---------------------------------------AGCACCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCA-----------------------------------------------------------------GCAGCAACAC---------------CA--------CC---AG---CAGCA---------GCAACATC---A---ACAG---------------------C---AGCAGCAACA-----------CCAACAG------------------------------------CAGCA---GCAACTC-------------------CAA--CAGSizeHit CountTotal NormTotal
No Reads
droTak1
GGCCA--GCACTACCAGAGTCCCAACAGC--------------------------------------------------------------------------AGC-----------------------------------------------------------------AGCAGCAACAGCAGCAGCAGCGGCAGCAATTCTGCAGCAGCAACCAGCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCAG-------------------------------------------------------------------------------------TAGCAATAGCAATAGCTATGCCAACAG------T-------CCGCTCAGCCCGCTCACACCCAATCCTACTACGGTAG--CTGAA-----------AGGAATCA--------------------------------------------CAGTC--ATC--------------------------------------------------------------------AGCAGCAGCAGCAACACAACCAGCAACA-----------------------------------------------------------------GCAGCAACAC---------------AA--------CC---AG---CAGCA---------GCAGCAGC---A---A------------------------CACCAGCAGCAACATCATACCCAGCACCA---------------------------------------CGACA---ACAGCAA-------------------TAG--CAGSizeHit CountTotal NormTotal
No Reads
droEug1
AGCAACTCTGTTGCCGC--AGCAATCGCCAAAT-A--CCA-C-AACAGCAACAGGC-------------------------------------AACCTG-------------------------------------------------------------C----------AGCAG-----------------------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAACAGCAGCAGC---------------------------------------ATCATCAGCAGCAA-------------------------------------------------------------------------------TACCAGCAGCA-------------------------------------------------------------------------------------------------------------------------------TCAGCAACT------------------TCTGTCGC------------------------AGCAG------CAAC-----------TCCTGTC-----------------------------------------------------------------------------------------GCAGCAGCAACAGCAATATCAGCAGCCGCAGCA-----GCAACAG---CAGCACTTCCAGC---------A------G------CAACAG---------CACTTGCAGCAGCA-----------GCAG---------------------------------------CAGCAGCAACAGCAC-------------------GCA--CAGSizeHit CountTotal NormTotal
No Reads
dm3
CC--G--CCACCAGCAA--CAACAACAACAACA----CCA-CCACCACC-ACAGGAAGCCG---------------------------------------------------------------------------------------------------C----------AGCGGCAGCAACAACAACAAGTGTTGC---------------------------------CGGGAC---AAC---AG---GAAC------------------------------AGCAGTCGCAGCAAAGGCTAGC---------------------------------------------------------------------------------A------A-------------------------------------------------------------------------------------------------------------------------------------------------------AACCA---------------CAAGC------------------------------------------------------------------------------------------------------AGAACAAGCAGCAGCAGCA------------GCAGC------AGCAGCGAC------------------------AGCAG----------------------------------------------------------------------------------------------------------CAACATAAACAGCAGCAGCAAAA-----------------------GC---GG------CAACAGCAGCAGCGGCAG---------------------------------CAGCAGCAGCAGTA-----------ACTGCAAC------------------AG---------------CAACA---CCTGCAA-------------------CAG--CAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC------------------------------------------------------------------------------------------------------AGAACAAGCAGCAGCAGCA------------GCAGC------AGC.........................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................C---AAC---AG---GAAC------------------------------AGCAGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---------------------------------CAGCAGCAGCAGTA-----------AC...................................................................................2050.4020000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC------AGCAGCGAC------------------------AGCAG----------------------------------------------------------------------------------------------------------CA..........................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC------AGCAGCGAC------------------------AGCAG----------------------------------------------------------------------------------------------------------CA..........................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
................A--CAACAACAACAACA----CCA-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000100000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............AA--CAACAACAACAACA----CCA-C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------GCAGC------AGCAGCGAC------------------------AGCA.......................................................................................................................................................................................................................................................................................................................................1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCGGCAG---------------------------------CAGCAGC.......................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000001000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCGGCAG---------------------------------CAGCAGC.......................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000002000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCGGCAG---------------------------------CAGCAG........................................................................................................21200.1530000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCGGCAG---------------------------------CAGC..........................................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA------------GCAGC------AGCAGCGAC------------------------...........................................................................................................................................................................................................................................................................................................................................2490.1110000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCGGCAG---------------------------------CAGCAGCAG.....................................................................................................21190.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCGGCAG---------------------------------CAGCAGCA......................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA------------GCAGC------AGCAGCGA....................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCAGCAGCAGCA------------GCA....................................................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA------------GCAGC------AGCAGCGAC------------------------A..........................................................................................................................................................................................................................................................................................................................................21110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCGGCAG---------------------------------CAGCAGCAGC....................................................................................................23110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................CAACA----CCA-CCACCACC-ACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20120.0810000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---------------------------------CAGCAGCAGCAGTA-----------A....................................................................................18130.0810000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CACCAGCAA--CAACAACAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............CAA--CAACAACAACAACA----CCA-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCGGCAG---------------------------------CAGCAGC.......................................................................................................22170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------------GCAGC------AGCAGCGAC------------------------A..........................................................................................................................................................................................................................................................................................................................................18180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA------------GCAGC------AGCAGCGA....................................................................................................................................................................................................................................................................................................................................................................22190.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------CAACAGCAGCAGCGGCA................................................................................................................................................18190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCGGCAG---------------------------------CAGCAG........................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGGCAG---------------------------------CAGCAGCAGCAG..................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..............CAA--CAACAACAACAACA----CC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCAGCAGCAGCA------------GCAGC------............................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCGGCAG---------------------------------CAGCA.........................................................................................................19200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---------------------------------CAGCAGCAGCAGTA-----------.....................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------------GCAGC------AGCAGCGAC------------------------...........................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA------------GCAGC------AGCAGCGAC------------------------...........................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCGGCAG---------------------------------CAGCAGC.......................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...........CAGCAA--CAACAACAACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA------------GCAGC------AGCAGCG.....................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CC--G--CCACCAGCAA--CAACCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droSim2
GGTGA--CCACACCGAA--AGCAGTGG----------ACA-CCACAAG-------------------TTCACAGGCGCCGGCAACAACCACGCGGCCAA--------------------------------------------------------------------------CAACAACGGTTAGAACC---------------------------------------------------------------------------------------------------ACCACGATTACCACCACC------------------------------------------------------------------------------------------------ACTACAACAGCAACAAC---------------------------------------TACGCCCAAAACGG------------------------------------------------------------A--------AG--------AGACAACAACA---ACAACG-------------------AC-------------------------------------CA----------------AGAAACCA--------------------------------------------GAGCC--AAC--------------------------------------------------------------------AACCATGGTGG---CACCACGAA-----------------------------------------------------------CAACAAAAACATCAGCAACCGAA-----------------------GC---GG---------CAG---------C---AGCA------G------------CAGCAGCAGCAGCAACTAGCACA-----------ACAA---------------------------------------CAGCA---GCAACTT-------------------CCG--CTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------ACAA---------------------------------------CAGCA---GCAACTT-------------------C.......1811.00100000100000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAAC---------------------------------------TAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15180.06100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---------C---AGCA------G------------CAGCAGCAGCAGC..........................................................................................................22200.05100000000000100000
droSec2
CACAA--CAACTGCCAA--TCCGGCGGC---------------------------------------------------------------------------GGCGGCAGCAGCAGCA--------------------------------------------------------G---------CAGCAACAGCAGC--------------------CGG----------------CTA--CAACGGCA---CCAGCAACTTGATAATCATCGAGC--------------C------------------------------------------------------------------------------------------------------------GCAGCAGCAACAGCAACAGC---------------------------------------CGC---AG-------------------------------------------------------------------------------------CAGCAGCAGCAACAGTTC--------------------------------------------------------------------------------------------------------------------------AGCTACC------ACAGCAACAGCAGCAATAACAACTACTACCACAGCAATGGCAGC-----------------------------AA------------------------------------GC-AGGCAGCACACGCCAGCAACATGT------------------------ATCAACAGCAGC--------------------------------AGCAG---CATCAG------------CAACA------G------------CAGCAGCAACATCAGCAGCATCT-----------GCAG---------------------------------------CATCA---GCAACAC-------------------GCG--CAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCCAGCAACATGT------------------------ATCAACAGC............................................................................................................................................................................................................2511.0010001
......................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAACAGC---------------------------------------CGC---AG-------------------------------------------------------------------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.2511000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACAGCAGC--------------------------------AGCAG---CATCA............................................................................................................................................................2260.1710010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---CATCAG------------CAACA------G------------CA.....................................................................................................................18160.0610010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC--------------------------------AGCAG---CATCAG------------CAA............................................................................................................................................19190.0510010
...............................................................................................................CAGCAGCA--------------------------------------------------------G---------CAGCAACAGCAGC--------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510010
................................................................................................................AGCAGCA--------------------------------------------------------G---------CAGCAACAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------CAACA------G------------CAGCAGCAACATC..........................................................................................................20200.0510010
droYak3
AACAG--CAACAACCAC--AACAGCAAC---------------------------------------------------------------------------------------------AGCCACTTCCAAGTCCTGC--------------CAGCGACAGCCGAGCCT------------AA---------------CGATC--------------------------------------------------------------------------------------------------CAAG---------------------------------------------------------------------------------T------GA---ACAACAACAACAGCAATAAC---------------------------------------AGCACTAA-------------------------------------------------------------------------------------------------CGGTACTA---GTAACGGCAATCGGGT--CTCGGTGGC------------------------------------TTCGCCCACT-AGC----------------------ATCGTGAACAACAACAACGGCGTGT------GCGTTGTC------AACTGC------------------------AGCTA--------------------------------------CACCCCCAGCAGCAG-----------------------------------------------------CAACAA---------CAA------------------CAAC-----------AA---CAACAACAG---------C---AGCA---GCAG---------CAGCTG------CATCAGCAA---CA-----------CCAC---------------------------------------CAACA---GCAACAT-------------------CAG--CAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........CAACCAC--AACAGCAAC---------------------------------------------------------------------------------------------AGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50101000000000
..CAG--CAACAACCAC--AACAGCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.50101000000000
........AACAACCAC--AACAGCAAC---------------------------------------------------------------------------------------------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.25101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC-----------AA---CAACAACAG---------C---AGCA---GCAG---------CAGC......................................................................................................................2890.11101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA------------------CAAC-----------AA---CAACAACAG---------C---AGCA---GCAG---------CA........................................................................................................................29110.09101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA------------------CAAC-----------AA---CAACAACAG---------C---AGCA---GC.....................................................................................................................................25200.05101000000000
droEre2
AACCA--CAACTTCCAGCAGCCAACAATCAAAA----TCA-C---------------------------------------------------------------------------------------------------------------------------------AGCAACAATAGTAGCAATAAATTTTGTTATCCTACGGCGGCAGCCATGGAGAATATGTTCCAAAAC---AAT---CA---G-AT------------------------------GGC----------------GGCCGCTGCCGCCGCACGCGAATCCCTGCTGAATTCCTATCTCTATCAAAAAGATAGCGATGCCAGCAATTACATGTCGGAGCAGAGCTATTGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCAC---CACCACCAGCAGCAG-----------------------------------------------------CA---------GCAGCAA---------CATCAACAACACCA-----GCAGCAGCAG---CATCAA------------C---A---GCAG------------CAACAG---CAACATCAACA--------------TCAA---------------------------------------CAGCA---GCAACAC----------------CAGCAG--CAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................AATTACATGTCGGAGCAGAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0021000100
.......................................................................................................................................................................................................................................................................................................................................................................................ACATGTCGGAGCAGAGCTATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACA--------------TCAA---------------------------------------CAGCA---GCAACAC----------------CAG........2511.0011000000
................................A----TCA-C---------------------------------------------------------------------------------------------------------------------------------AGCAACAATAGTAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...........................................................................................................................................................................................................................................................G-AT------------------------------GGC----------------GGCCGCTGCCGCCGCACGCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
...........................................................................................................................................................................................ATAAATTTTGTTATCCTACGGCGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................AATTACATGTCGGAGCAGAGCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGCTATTGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCA.......................................................................................................................................................................................................................................................................................................1811.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CATCAA------------C---A---GCAG------------CAACAG---CAAC..........................................................................................................2420.5011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---CAACATCAACA--------------TCAA---------------------------------------CAG.......................................2130.3310000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACACCA-----GCAGCAGCAG---C................................................................................................................................................................2060.1710000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC---CACCACCAGCAGCAG-----------------------------------------------------CA---------GC...............................................................................................................................................................................................................21170.0610000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------C---A---GCAG------------CAACAG---CAACA.........................................................................................................19200.0511000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCAGCAGCAG-----------------------------------------------------CA---------GCAGCA...........................................................................................................................................................................................................21200.0510000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACCA-----GCAGCAGCAG---CA...............................................................................................................................................................19200.0511000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGCAGCAG-----------------------------------------------------CA---------GCAGCA...........................................................................................................................................................................................................20200.0510001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCACCAGCAGCAG-----------------------------------------------------CA---------GC...............................................................................................................................................................................................................19200.0511000000

Generated: 05/18/2015 at 01:42 AM