ID:

dwi_1496

 Coordinate:

scf2_1100000004558:1020254-1020404 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-21.9 -21.4 -21.2 -21.1

Flybase annnotation

exon [dwil_GLEANR_5196:1]; CDS [Dwil\GK22091-cds]; intron [Dwil\GK22091-in]

No Repeatable elements found

Sense Strand Reads

------------------------------------##############---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCTGCGTGTTCCGACTAAATTATTTCCCCCAACAAAATGAGTGTCGAAAGGTAAATAAATACATTCAAATTCTCTCAGCTGTTCTGCTAGAAAATAAAAAACAAAACAGAAACAAGCAAAAAACACTACGAATATATACATAGATTTTGCGAATATTTTTGCGTATTTTAATATGTTTGGTCTGAGCAGCTAAAAATACATTTGTTTCACACATTAATTTGGCAAAACTTTAAACCCTCCAACAAGCCACC
**************************************************............((............((((((((.((((((...(((((.((....((((((...((((((.......................)))))).....)))))).)).))))).....))))))..))))))))........))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V119
head
 V117
male body		 V118
embryo
 M045
female body
................................CAAAATGAGTGTCGAAAGGG....................................................................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0
.................................................................CAAATTCTCTCAGCTGTTCTG..................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
.....................ATTTCCCCCAACAAAATGAGTGT............................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0
..................................................................................................................................................................................GGTATGAGTAGCTAAAGATA..................................................... 20 3 13 0.08 1 0 0 0 1
..................................................................................................................................................................................GGTCTGAGTAGCGAAAGA....................................................... 18 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

GGACGCACAAGGCTGATTTAATAAAGGGGGTTGTTTTACTCACAGCTTTCCATTTATTTATGTAAGTTTAAGAGAGTCGACAAGACGATCTTTTATTTTTTGTTTTGTCTTTGTTCGTTTTTTGTGATGCTTATATATGTATCTAAAACGCTTATAAAAACGCATAAAATTATACAAACCAGACTCGTCGATTTTTATGTAAACAAAGTGTGTAATTAAACCGTTTTGAAATTTGGGAGGTTGTTCGGTGG
**************************************************............((............((((((((.((((((...(((((.((....((((((...((((((.......................)))))).....)))))).)).))))).....))))))..))))))))........))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
................................................................................................................................................................................ACCCAGACTCGTCGATTC......................................................... 18 2 2 0.50 1 1 0
....................ATAAAGGGGATTGTTTAA..................................................................................................................................................................................................................... 18 2 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004558:1020204-1020454 - dwi_1496 CCTGCGTGTTCCGACTAAATTATTTCCCCCAACAAAATGAGTGTCGAAAGGTAAATAAATACATTCAAATTCTCTCAGCTGTTCTGCTAGAAAATAAAAAACAAAACAGAAACAAGCAAAAAACACTACGAATATATACATAGATTTTGCGAATATTTTTGCGTATTTTAATATGTTTGGTCTGAGCAGCTAAAAATACATTTGTTTCACACATTAATTTGGCAAAACTTTAAACCCTCCAACAAGCCACC
droMoj3 scaffold_191:1623-1657 - T---------------------------------------------------------------------------------------AAAAAAAAAAAAAAAAAAAAAAAACAAGTAAAAA---------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15203:10566634-10566687 - T---------------------------------------------------------------------------------------AAATAATAAATAACAAAACAAAAACAAAAAAAAAAAACAACAAAAAAACGTAT--------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CCTGCGTGTTCCGACTAAATTATTTCCCCCAACAAAATGAGTGTCGAAAGGTAAATAAATACATTCAAATTCTCTCAGCTGTTCTGCTAGAAAATAAAAAACAAAACAGAAACAAGCAAAAAACACTACGAATATATACATAGATTTTGCGAATATTTTTGCGTATTTTAATATGTTTGGTCTGAGCAGCTAAAAATACATTTGTTTCACACATTAATTTGGCAAAACTTTAAACCCTCCAACAAGCCACCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................CAAAATGAGTGTCGAAAGGG.......................................................................................................................................................................................................2011.00100100
.................................................................CAAATTCTCTCAGCTGTTCTG.....................................................................................................................................................................2111.00100001
.....................ATTTCCCCCAACAAAATGAGTGT...............................................................................................................................................................................................................2311.00100010
droMoj3
T---------------------------------------------------------------------------------------AAAAAAAAAAAAAAAAAAAAAAAACAAGTAAAAA---------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
T---------------------------------------------------------------------------------------AAATAATAAATAACAAAACAAAAACAAAAAAAAAAAACAACAAAAAAACGTAT--------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:42 AM