ID:

dwi_148

 Coordinate:

scf2_1100000004943:10291984-10292064 -

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.2 -24.1 -24.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CGAATCAGAAGCCGAACAATTTCAAGTTCTCTACAAATTGCGAACTCTGCTGCAGTTGAATGTGAGTAGACAGCGAATAAACACCAAAAACTTTGTATTTGTTGCATGTTTATTAGACTGACTGCTTGGCAGGTTAGCAAGGATGACTACCTGCCCAAGTATATCTGTGAGCCGTGTCTGG

**********************************************((((((((((((...((.((((((((((.((((((.((.((....)).)).)))))))).))))))))..)))))))))..))))).............************************************ 		Read size # Mismatch Hit Count Total Norm Total M020

head

 V119

head

 M045

female body

 V117

male body		 V118

embryo
............................................................................................................TTTATTAGACTGACTGCTTGGC................................................... 22 0 1 3956.00 3956 3716 236 4 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGCA.................................................. 23 0 1 2503.00 2503 2408 92 2 1 0
............................................................................................................TTTATTAGACTGACTGCTTGG.................................................... 21 0 1 851.00 851 608 234 7 2 0
.............................................................................................................TTATTAGACTGACTGCTTGGC................................................... 21 0 1 719.00 719 667 52 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGCAG................................................. 24 0 1 323.00 323 271 46 6 0 0
.............................................................GTGAGTAGACAGCGAATAAACA.................................................................................................. 22 0 1 136.00 136 18 118 0 0 0
............................................................................................................TTTATTAGACTGACTGCT....................................................... 18 0 1 125.00 125 125 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGCC.................................................. 23 1 1 93.00 93 93 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGCG.................................................. 23 1 1 86.00 86 86 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGCAGT................................................ 25 1 1 70.00 70 55 14 1 0 0
............................................................................................................TTTATTAGACTGACTGCTTGAC................................................... 22 1 1 51.00 51 51 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGT................................................... 22 1 1 46.00 46 27 19 0 0 0
.............................................................GTGAGTAGACAGCGAATAAAC................................................................................................... 21 0 1 33.00 33 15 18 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGTT.................................................. 23 2 1 23.00 23 22 1 0 0 0
.............................................................................................................TTATTAGACTGACTGCTTGGCA.................................................. 22 0 1 21.00 21 20 1 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGCT.................................................. 23 1 1 18.00 18 17 1 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGCAA................................................. 24 1 1 18.00 18 18 0 0 0 0
............................................................................................................TTTATTAGACTGGCTGCTTGGC................................................... 22 1 1 17.00 17 17 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGTA.................................................. 23 1 1 14.00 14 14 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGG................................................... 22 1 1 14.00 14 13 1 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGCAGA................................................ 25 1 1 12.00 12 10 2 0 0 0
.............................................................................................................TTATTAGACTGACTGCTTGG.................................................... 20 0 1 12.00 12 7 5 0 0 0
............................................................................................................TTTATTAGACTGGCTGCTTGGCA.................................................. 23 1 1 12.00 12 12 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGCAT................................................. 24 1 1 11.00 11 10 1 0 0 0
.............................................................................................................TTATTAGACTGACTGCTTGAC................................................... 21 1 1 10.00 10 10 0 0 0 0
.............................................................................................................TTATTAGACTGACTGCTTGGCAGT................................................ 24 1 1 10.00 10 8 2 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGCCG................................................. 24 1 1 9.00 9 9 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCGTGG.................................................... 21 1 1 9.00 9 9 0 0 0 0
............................................................................................................CTTATTAGACTGACTGCTTGGC................................................... 22 1 1 7.00 7 4 3 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGA................................................... 22 1 1 7.00 7 5 2 0 0 0
..............................................................................................................TATTAGACTGACTGCTTGGCA.................................................. 21 0 1 7.00 7 6 1 0 0 0
............................................................................................................TTTATTACACTGACTGCTTGGC................................................... 22 1 1 5.00 5 5 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGT.................................................... 21 1 1 5.00 5 2 3 0 0 0
............................................................................................................TTTATTATACTGACTGCTTGGC................................................... 22 1 1 5.00 5 4 1 0 0 0
............................................................................................................TTTATTAGGCTGACTGCTTGGC................................................... 22 1 1 5.00 5 5 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTG..................................................... 20 0 1 4.00 4 2 2 0 0 0
............................................................................................................TTTATTAGACTGCCTGCTTGGC................................................... 22 1 1 4.00 4 4 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTT...................................................... 19 0 1 4.00 4 4 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGCAGG................................................ 25 0 1 4.00 4 4 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGAA.................................................. 23 1 1 4.00 4 2 2 0 0 0
.............................................................GTGAGTAGACAGCGAATAAA.................................................................................................... 20 0 1 4.00 4 0 4 0 0 0
............................................................................................................TTTATTAGACTGACTGCC....................................................... 18 1 2 4.00 8 8 0 0 0 0
............................................................................................................TTTATTAGACTGACTCCTTGGC................................................... 22 1 1 4.00 4 3 1 0 0 0
............................................................................................................TTTATTAGACTGACTTCTTGGC................................................... 22 1 1 3.00 3 3 0 0 0 0
............................................................................................................TTTATTAGACTGGCTGCTTGG.................................................... 21 1 1 3.00 3 2 1 0 0 0
............................................................................................................TTTATTAGACCGACTGCTTGGC................................................... 22 1 1 3.00 3 2 1 0 0 0
.............................................................GTGAGTAGACAGCGAATAA..................................................................................................... 19 0 1 3.00 3 0 2 1 0 0
............................................................................................................TTTATTAGACTGGCTGCTTGGCAG................................................. 24 1 1 3.00 3 3 0 0 0 0
............................................................................................................TTTATTAGACTGACTTCTTGGCA.................................................. 23 1 1 3.00 3 3 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCG....................................................... 18 1 1 2.00 2 2 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGCC................................................... 22 1 1 2.00 2 1 1 0 0 0
............................................................................................................TTTATTAGACTGCCTGCTTGGCA.................................................. 23 1 1 2.00 2 2 0 0 0 0
............................................................................................................TTTATTAGGCTGACTGCTTGG.................................................... 21 1 1 2.00 2 2 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGTC................................................... 22 1 1 2.00 2 2 0 0 0 0
............................................................................................................TTTATTAGACTTACTGCTTGG.................................................... 21 1 1 2.00 2 1 1 0 0 0
............................................................................................................TTTACTAGACTGACTGCTTGGC................................................... 22 1 1 2.00 2 2 0 0 0 0
............................................................................................................TTTATTAGATTGACTGCTTGGC................................................... 22 1 1 2.00 2 1 1 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGTCA.................................................. 23 1 1 2.00 2 2 0 0 0 0
............................................................................................................TTTATTAGACTGTCTGCTTGGCA.................................................. 23 1 1 2.00 2 2 0 0 0 0
.............................................................................................................TTATTAGACTGACTGCTTGGCG.................................................. 22 1 1 2.00 2 2 0 0 0 0
............................................................................................................TTTATTAGACTTACTGCTTGGC................................................... 22 1 1 2.00 2 1 1 0 0 0
.............................................................................................................TTATTAGACTGAATGCTTGGC................................................... 21 1 1 2.00 2 1 1 0 0 0
............................................................................................................TTTATTAGACTGACCGCTTGGC................................................... 22 1 1 2.00 2 1 1 0 0 0
............................................................................................................TTTATTAGACTGACTGATTGGC................................................... 22 1 1 2.00 2 1 1 0 0 0
............................................................................................................TTTATTAGACTGACTGGTTGGC................................................... 22 1 1 2.00 2 2 0 0 0 0
...........................................................................................................CTTTATTAGACTGACTGCTTGGC................................................... 23 1 1 2.00 2 1 1 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGCAGC................................................ 25 1 1 2.00 2 2 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGCAC................................................. 24 1 1 2.00 2 2 0 0 0 0
............................................................................................................TTTATTAGACTGATTGCTTGGC................................................... 22 1 1 2.00 2 2 0 0 0 0
............................................................................................................TTTATTCGACTGACTGCTTGGC................................................... 22 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCCTGGCA.................................................. 23 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTAATTAGACTGACTGCTTGGTAG................................................. 24 2 1 1.00 1 0 1 0 0 0
............................................................................................................TTTATTAGACCGACTGCTTGGCA.................................................. 23 1 1 1.00 1 0 1 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTTGC................................................... 22 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTACTAGACTGACTGCTTGGCA.................................................. 23 1 1 1.00 1 1 0 0 0 0
.............................................................................................................TTATTAGACTGACTGCTTGGCAGA................................................ 24 1 1 1.00 1 0 1 0 0 0
.............................................................................................................TTATTAGACTGACTGCTTGGA................................................... 21 1 1 1.00 1 0 1 0 0 0
............................................................................................................TTTATTAGACTGACTGCTCGG.................................................... 21 1 1 1.00 1 0 1 0 0 0
.............................................................................................................TTATTAGACTGACCGCTTGGC................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................................TTTAGACTGACTGCTTGGCA.................................................. 20 1 1 1.00 1 1 0 0 0 0
............................................................................................................ATTATTAGACTGACTGCTTGGC................................................... 22 1 1 1.00 1 0 1 0 0 0
...........................................................................................................CTCTATTAGACTGACTGCTTGGCA.................................................. 24 2 1 1.00 1 0 1 0 0 0
............................................................................................................TTTATTAAACTGACTGCTTGG.................................................... 21 1 1 1.00 1 0 1 0 0 0
.............................................................................................................TTATTAGACTGACTGCTTGGCAG................................................. 23 0 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTGGCTGCTTGGCCT................................................. 24 3 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGATTGACTACTTGGCA.................................................. 23 2 1 1.00 1 0 1 0 0 0
............................................................................................................TTTATCAGACTGACTGCTTGGC................................................... 22 1 1 1.00 1 1 0 0 0 0
..............................................................TGAGTAGACAGCGAATAAACAC................................................................................................. 22 0 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGCGGT................................................ 25 2 1 1.00 1 1 0 0 0 0
.............................................................................................................TTCTTAGACTGACTGCTTGGC................................................... 21 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTGACTTCTTGG.................................................... 21 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTCGGC................................................... 22 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGCTT................................................. 24 2 1 1.00 1 0 1 0 0 0
............................................................................................................TTTATTAGACTGAATGCTTGG.................................................... 21 1 1 1.00 1 0 1 0 0 0
.............................................................................................................TTATTAGAATGACTGCTTGGC................................................... 21 1 1 1.00 1 1 0 0 0 0
.............................................................................................................TTACTAGACTGACTGCTTGGC................................................... 21 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTAACTGCTTGG.................................................... 21 1 1 1.00 1 0 1 0 0 0
............................................................................................................TTTATTAGAACGACTGCTTGGCA.................................................. 23 2 1 1.00 1 0 1 0 0 0
............................................................................................................TTTATTAGACTGTCTGCT....................................................... 18 1 1 1.00 1 1 0 0 0 0
.............................................................................................................TTATTAGACTGACTGCTTGGCT.................................................. 22 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTCGGTA.................................................. 23 2 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTGACTACTTGGC................................................... 22 1 1 1.00 1 1 0 0 0 0
.............................................................GTGAGTAGACAGCGAATTAAAA.................................................................................................. 22 2 1 1.00 1 0 1 0 0 0
.............................................................GTGAGTAGACCGCGAATAAACA.................................................................................................. 22 1 1 1.00 1 0 1 0 0 0
...............................................................................................................ATTAGACTGACTGCTTGGCA.................................................. 20 0 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGCCT................................................. 24 2 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTGGCTGCTTGGCAC................................................. 24 2 1 1.00 1 1 0 0 0 0
.............................................................................................................TTATTATACTGACTGCTTGGC................................................... 21 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGCCTGACTGCTTGGC................................................... 22 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTACTAGACTGACTGCTTGG.................................................... 21 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTAACTGCTTGGTA.................................................. 23 2 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCATGGCA.................................................. 23 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGGCTGACTGCTTGGCAG................................................. 24 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACCGACTGCTTGG.................................................... 21 1 1 1.00 1 0 1 0 0 0
.............................................................................................................TTATTAGACTGAATGCTTGG.................................................... 20 1 1 1.00 1 0 1 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTCGC................................................... 22 1 1 1.00 1 0 1 0 0 0
............................................................................................................TTCATTAGACTGACTGCTTGGC................................................... 22 1 1 1.00 1 0 1 0 0 0
.............................................................GTGAGTAGACAGCGCATAAACA.................................................................................................. 22 1 1 1.00 1 0 1 0 0 0
............................................................................................................TTTATTAGACTGACTACT....................................................... 18 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGAATGACTGCTTGGCAG................................................. 24 1 1 1.00 1 0 1 0 0 0
............................................................................................................TTGATTAGACTGACTGCTTGGC................................................... 22 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGTG.................................................. 23 2 1 1.00 1 1 0 0 0 0
..............................................................................................................TATTAGACTGACTGCTTGGCAGT................................................ 23 1 1 1.00 1 0 1 0 0 0
............................................................................................................TTTATTAGGCTGACTGCTTGGCA.................................................. 23 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACAGACTGCTTGGC................................................... 22 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTAGC................................................... 22 1 1 1.00 1 1 0 0 0 0
...............................................................................................................ATTAGACTGACTGCTTGG.................................................... 18 0 1 1.00 1 0 0 1 0 0
............................................................................................................TTTATTATACTGACTGCTTGGCC.................................................. 23 2 1 1.00 1 1 0 0 0 0
.............................................................................................................TTATTAGACTGACTTCTTGGC................................................... 21 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTAACTGCTTGGC................................................... 22 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGACA.................................................. 23 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTGACAGCTTGGC................................................... 22 1 1 1.00 1 0 1 0 0 0
...........................................................................................................CTTTATTAGACTGACTGCTTGG.................................................... 22 1 1 1.00 1 0 1 0 0 0
...............................................................................................................TTTAGACTGACTGCTTGGC................................................... 19 1 1 1.00 1 1 0 0 0 0
..............................................................................................................TATTAGACTGACTGCTTGGC................................................... 20 0 1 1.00 1 0 0 1 0 0
.............................................................GTGAGTAGACAGCGAATAAAAA.................................................................................................. 22 1 1 1.00 1 0 1 0 0 0
............................................................................................................GTTATTAGACTGACTGCTTGGC................................................... 22 1 1 1.00 1 1 0 0 0 0
.............................................................................................................TTATTAGACTGACTGCTTGGCAGG................................................ 24 0 1 1.00 1 1 0 0 0 0
.............................................................GTGGGTAGACAGCGAATAAACA.................................................................................................. 22 1 1 1.00 1 0 1 0 0 0
..........................................................................................................GATTTATTAGACTGACTGCTTGG.................................................... 23 2 1 1.00 1 0 0 1 0 0
............................................................................................................CTTATTAGACTGACTGCTTGG.................................................... 21 1 1 1.00 1 0 1 0 0 0
.............................................................................................................TTATTAGACTGAGTGCTTGGCAGG................................................ 24 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTAATAGACTGACTGCTTGGCG.................................................. 23 2 1 1.00 1 1 0 0 0 0
............................................................................................................TTTTTTAGACTGACTGCTTGGC................................................... 22 1 1 1.00 1 0 1 0 0 0
............................................................................................................TTTATTAGACTGACTCCTTGGCA.................................................. 23 1 1 1.00 1 1 0 0 0 0
............................................................CGTGAGTAGACAGCGAATAAACA.................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTGACTACTTGGCAG................................................. 24 1 1 1.00 1 0 1 0 0 0
............................................................................................................TTTATTAGACTGACCGCTTGGCA.................................................. 23 1 1 1.00 1 1 0 0 0 0
.............................................................................................................TTATTAGACTGACTGCTTGACAGA................................................ 24 2 1 1.00 1 0 1 0 0 0
..............................................................................................................TATTAGACTGACTGCTTGGA................................................... 20 1 1 1.00 1 0 1 0 0 0
............................................................................................................TTTATTAAACTGACTGCTTGGC................................................... 22 1 1 1.00 1 1 0 0 0 0
.............................................................................................................TTATTAGACTGACTGCTTGGG................................................... 21 1 1 1.00 1 1 0 0 0 0
.............................................................................................................TTATTAGACTGACTGCTTGGCC.................................................. 22 1 1 1.00 1 1 0 0 0 0
................................................................................................................TTAGACTGACTGCTTGGCAGGTTAG............................................ 25 0 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGTC.................................................. 23 2 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTAGGC................................................... 22 1 1 1.00 1 0 1 0 0 0
............................................................................................................TTTATTAGACTGACTGTTTGG.................................................... 21 1 1 1.00 1 1 0 0 0 0
.............................................................GTGAGTACACAGCGAATAAACA.................................................................................................. 22 1 1 1.00 1 0 1 0 0 0
............................................................................................................TTTATTAGACTCACTGCTTGGC................................................... 22 1 1 1.00 1 0 1 0 0 0
.............................................................................................................TTATTAGACTGACTCCTTGGC................................................... 21 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGGCTGACTGCT....................................................... 18 1 1 1.00 1 1 0 0 0 0
..............................................................................................................TTTAAGACTGACTGCTTGGCA.................................................. 21 2 1 1.00 1 1 0 0 0 0
............................................................................................................TTTGTTAGACTGACTGCTTGGCA.................................................. 23 1 1 1.00 1 0 1 0 0 0
............................................................................................................TTTATTAGACTGAATGCTTGGC................................................... 22 1 1 1.00 1 0 1 0 0 0
............................................................................................................TTTATTAGACTGAGTGCTTGGC................................................... 22 1 1 1.00 1 1 0 0 0 0
.............................................................................................................TTATTGGACTGACTGCTTGGC................................................... 21 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTGGACTGACTGCTTGGC................................................... 22 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCCTGGCAG................................................. 24 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTAATAGACTGACTGCTTGG.................................................... 21 1 1 1.00 1 1 0 0 0 0
.............................................................GCGAGTAGACAGCGAATAACCA.................................................................................................. 22 2 1 1.00 1 0 1 0 0 0
............................................................................................................TTTATTAGACTGCCTGCTTGAC................................................... 22 2 1 1.00 1 1 0 0 0 0
.............................................................GTGAGTAGATAGCGAATAAACA.................................................................................................. 22 1 1 1.00 1 0 1 0 0 0
............................................................................................................TTTATTAGACCGACTGCTTCG.................................................... 21 2 1 1.00 1 0 0 0 1 0
............................................................................................................TTTATTAGACTGACTGCTTGGTACC................................................ 25 3 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTGGCGG................................................. 24 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTGTTAGACTGACTGCTTGGC................................................... 22 1 1 1.00 1 0 1 0 0 0
.............................................................GTGAGTAGACAGCGAATCAACA.................................................................................................. 22 1 1 1.00 1 0 1 0 0 0
..............................................................................................................TATTAGACTGACTGCTTGGCAGG................................................ 23 0 1 1.00 1 1 0 0 0 0
.............................................................GTGAGTAGACAGCTAATAAACA.................................................................................................. 22 1 1 1.00 1 0 1 0 0 0
............................................................................................................TTTAATAGACTGACTGCT....................................................... 18 1 1 1.00 1 1 0 0 0 0
............................................................................................................TTTATTAGAATGACTGCTTGGC................................................... 22 1 1 1.00 1 0 1 0 0 0
............................................................................................................TTTATTAGACTGACTGCCTGGC................................................... 22 1 1 1.00 1 0 1 0 0 0
.............................................................................................................TTATTAGACTGGCTGCTTTGC................................................... 21 2 2 0.50 1 1 0 0 0 0
............................................................................................................TTTATTATATTGACTGCTTGGC................................................... 22 2 2 0.50 1 1 0 0 0 0
............................................................................................................TTTATTAGACTGACTGCTTTAAA.................................................. 23 3 3 0.33 1 1 0 0 0 0
.......................................................................................................................................AGCAATGATGACTACCTC............................ 18 2 4 0.25 1 1 0 0 0 0
....................................ATTGCGAACTGTGCTAAAGT............................................................................................................................. 20 3 16 0.06 1 1 0 0 0 0
............................................................................................................TTTATTAGACTGACTGTTGGT.................................................... 21 3 16 0.06 1 0 1 0 0 0
.........AGCCGAAAAATTTCAAGTT......................................................................................................................................................... 19 1 20 0.05 1 0 0 0 0 1
.......................................................ATCAATGGGAGTAGACAGC........................................................................................................... 19 3 20 0.05 1 0 0 0 0 1
...................................................................TAACAGCGAATAACCACCA............................................................................................... 19 3 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

GCTTAGTCTTCGGCTTGTTAAAGTTCAAGAGATGTTTAACGCTTGAGACGACGTCAACTTACACTCATCTGTCGCTTATTTGTGGTTTTTGAAACATAAACAACGTACAAATAATCTGACTGACGAACCGTCCAATCGTTCCTACTGATGGACGGGTTCATATAGACACTCGGCACAGACC

************************************((((((((((((...((.((((((((((.((((((.((.((....)).)).)))))))).))))))))..)))))))))..))))).............********************************************** 		Read size # Mismatch Hit Count Total Norm Total M045

female body
...............................................................................................................TGATCTGAATGACGAACC.................................................... 18 2 6 0.17 1 1
..............................................................................................................................................................CATGTAGACACTCGACACAT... 20 3 8 0.13 1 1
......................................AGGCTTGAGACGAGGTTAAC........................................................................................................................... 20 3 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004943:10291934-10292114 - dwi_148 confident CGAATCAGAAGCCGAACAATTTCAAGTTCTCTACAAATTGCGAACTCTGCTGCAGTTGAATGTGAGTAG-ACAGCGAATAAACACCAAAAACTTTGTATTTG--------TTGC--------ATGTTTATTAGACTGACTGCTTGGCAGGTTAGCAAGGATGACTACCTGCCCAAGTATATCTGTGAGCCGTGTCTGG
droVir3 scaffold_13047:11544060-11544233 - TGACCCGCAGGCGGAGCAGCGCCAACTGCTCTACAAGCTGCGCACGCTGCTGCAGGCGAATGTGAGTAGGTGTGCGTAAGTGCA---TGGGTGTGC----T------------GTGTTTATTGGCCT-----GTCCAATTACTTGACAGATAACCAAGGACGACTATCTGCCCAAGCACATATGCGAGCTGTGCCTCG
droMoj3 scaffold_6540:30215815-30215990 + TGAGCCGCAGGCGGAGCAGCGCCAATTGCTCTACAAGCTGCGCAGTCTGCTGCAGGCGAATGTGAGTAGCTGAGTATATGAGTA---TGTGTGCAT---TTACATATATATATGTGTTTG---------T-------GGTCCTCAACAGATAACCAAGGACGACTATCTGCCAAAGCACATATGCGAGCTGTGCCTCG
droGri2 scaffold_14624:1595965-1596031 - TGAGAAAGAGGCCGAGCACCGACAATTGCTCTACAAACTGCGCACTCTGCTCCTGGCGAATGTTAGT-----------------------------------------------------------------------------------------------------------------------------------
dp5 2:464840-465021 + CGCGGAGGAGGCCATGCAGCGGCAGCTGCTCCACAAGCTCCGCAGCCTGCTGCTGGCGCACGTAAGTAG-TCTGCGGATCAACA---AGCGCGCCG----TATATCCGTATATC--------CGGCTAATGAGCCCCACTGCTTGGCAGGTCGCCGAGGAGGACCTCCTGCCCCAGTACATCTGTGACCGGTGCCTGG
droPer2 scaffold_7:3247393-3247574 + CGCGGAGGAGGCCATGCAGCGGCAGCTGCTCCACAAGCTCCGCAGCCTGCTGCTGGCGCACGTAAGTAG-TCTGCGGATCAACA---AGCGCGCCG----TATATCCGTATATC--------CGGCTAATGAGCCCCACTGCTTGGCAGGTCGCCGAGGAGGACCTCCTGCCCCAGTACATCTGTGACCGGTGCCTGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CGAATCAGAAGCCGAACAATTTCAAGTTCTCTACAAATTGCGAACTCTGCTGCAGTTGAATGTGAGTAG-ACAGCGAATAAACACCAAAAACTTTGTATTTG--------TTGC--------ATGTTTATTAGACTGACTGCTTGGCAGGTTAGCAAGGATGACTACCTGCCCAAGTATATCTGTGAGCCGTGTCTGGSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.............................................................................................................................TTTATTAGACTGACTGCTTGGC...................................................2213956.0039563716400236
.............................................................................................................................TTTATTAGACTGACTGCTTGGCA..................................................2312503.002503240821092
.............................................................................................................................TTTATTAGACTGACTGCTTGG....................................................211851.00851608720234
..............................................................................................................................TTATTAGACTGACTGCTTGGC...................................................211719.0071966700052
.............................................................................................................................TTTATTAGACTGACTGCTTGGCAG.................................................241323.0032327160046
.............................................................GTGAGTAG-ACAGCGAATAAACA..................................................................................................................221136.0013618000118
.............................................................................................................................TTTATTAGACTGACTGCT.......................................................181125.001251250000
.............................................................................................................................TTTATTAGACTGACTGCTTGGCC..................................................23193.0093930000
.............................................................................................................................TTTATTAGACTGACTGCTTGGCG..................................................23186.0086860000
.............................................................................................................................TTTATTAGACTGACTGCTTGGCAGT................................................25170.00705510014
.............................................................................................................................TTTATTAGACTGACTGCTTGGT...................................................22146.00462700019
.............................................................GTGAGTAG-ACAGCGAATAAAC...................................................................................................................21133.00331500018
.............................................................................................................................TTTATTAGACTGACTGCTTGGTT..................................................23123.0023220001
..............................................................................................................................TTATTAGACTGACTGCTTGGCA..................................................22121.0021200001
.............................................................................................................................TTTATTAGACTGACTGCTTGGCT..................................................23118.0018170001
.............................................................................................................................TTTATTAGACTGACTGCTTGGCAA.................................................24118.0018180000
.............................................................................................................................TTTATTAGACTGACTGCTTGGG...................................................22114.0014130001
.............................................................................................................................TTTATTAGACTGACTGCTTGGCAGA................................................25112.0012100002
..............................................................................................................................TTATTAGACTGACTGCTTGG....................................................20112.001270005
.............................................................................................................................TTTATTAGACTGACTGCTTGGCAT.................................................24111.0011100001
..............................................................................................................................TTATTAGACTGACTGCTTGGCAGT................................................24110.001080002
.............................................................................................................................TTTATTAGACTGACTGCTTGGA...................................................2217.00750002
...............................................................................................................................TATTAGACTGACTGCTTGGCA..................................................2117.00760001
.............................................................................................................................TTTATTAGACTGACTGCTTGT....................................................2115.00520003
.............................................................................................................................TTTATTAGACTGACTGCTTG.....................................................2014.00420002
.............................................................................................................................TTTATTAGACTGACTGCTT......................................................1914.00440000
.............................................................................................................................TTTATTAGACTGACTGCTTGGCAGG................................................2514.00440000
.............................................................GTGAGTAG-ACAGCGAATAAA....................................................................................................................2014.00400004
.............................................................................................................................TTTATTAGACTGACTGCC.......................................................1824.00880000
.............................................................GTGAGTAG-ACAGCGAATAA.....................................................................................................................1913.00301002
.............................................................................................................................TTTATTAGACTGACTGCG.......................................................1812.00220000
..............................................................................................................................TTATTAGACTGACTGCTTGGCG..................................................2212.00220000
.............................................................................................................................TTTATTAGACTGACTGCTTGGCAGC................................................2512.00220000
.............................................................................................................................TTTATTAGACTGACTGCTTGGCAC.................................................2412.00220000
..............................................................................................................................TTATTAGACTGACTGCTTGGCAGA................................................2411.00100001
..............................................................................................................................TTATTAGACTGACTGCTTGGA...................................................2111.00100001
..............................................................................................................................TTATTAGACTGACTGCTTGGCAG.................................................2311.00110000
..............................................................TGAGTAG-ACAGCGAATAAACAC.................................................................................................................2211.00110000
.............................................................................................................................TTTATTAGACTGACTGCTTGGCTT.................................................2411.00100001
..............................................................................................................................TTATTAGACTGACTGCTTGGCT..................................................2211.00110000
................................................................................................................................ATTAGACTGACTGCTTGGCA..................................................2011.00110000
.............................................................................................................................TTTATTAGACTGACTGCTTGGCCT.................................................2411.00110000
.............................................................................................................................TTTATTAGACTGACTGCTTGGTG..................................................2311.00110000
...............................................................................................................................TATTAGACTGACTGCTTGGCAGT................................................2311.00100001
................................................................................................................................ATTAGACTGACTGCTTGG....................................................1811.00101000
...............................................................................................................................TATTAGACTGACTGCTTGGC...................................................2011.00101000
..............................................................................................................................TTATTAGACTGACTGCTTGGCAGG................................................2411.00110000
...............................................................................................................................TATTAGACTGACTGCTTGGA...................................................2011.00100001
..............................................................................................................................TTATTAGACTGACTGCTTGGG...................................................2111.00110000
..............................................................................................................................TTATTAGACTGACTGCTTGGCC..................................................2211.00110000
.................................................................................................................................TTAGACTGACTGCTTGGCAGGTTAG............................................2511.00110000
.............................................................................................................................TTTATTAGACTGACTGCTTGGTC..................................................2311.00110000
...............................................................................................................................TATTAGACTGACTGCTTGGCAGG................................................2311.00110000
droVir3
TGACCCGCAGGCGGAGCAGCGCCAACTGCTCTACAAGCTGCGCACGCTGCTGCAGGCGAATGTGAGTAGGTGTGCGTAAGTGCA---TGGGTGTGC----T------------GTGTTTATTGGCCT-----GTCCAATTACTTGACAGATAACCAAGGACGACTATCTGCCCAAGCACATATGCGAGCTGTGCCTCGSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
No Reads
droMoj3
TGAGCCGCAGGCGGAGCAGCGCCAATTGCTCTACAAGCTGCGCAGTCTGCTGCAGGCGAATGTGAGTAGCTGAGTATATGAGTA---TGTGTGCAT---TTACATATATATATGTGTTTG---------T-------GGTCCTCAACAGATAACCAAGGACGACTATCTGCCAAAGCACATATGCGAGCTGTGCCTCGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
No Reads
droGri2
TGAGAAAGAGGCCGAGCACCGACAATTGCTCTACAAACTGCGCACTCTGCTCCTGGCGAATGTTAGT-----------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads
dp5
CGCGGAGGAGGCCATGCAGCGGCAGCTGCTCCACAAGCTCCGCAGCCTGCTGCTGGCGCACGTAAGTAG-TCTGCGGATCAACA---AGCGCGCCG----TATATCCGTATATC--------CGGCTAATGAGCCCCACTGCTTGGCAGGTCGCCGAGGAGGACCTCCTGCCCCAGTACATCTGTGACCGGTGCCTGGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
No Reads
droPer2
CGCGGAGGAGGCCATGCAGCGGCAGCTGCTCCACAAGCTCCGCAGCCTGCTGCTGGCGCACGTAAGTAG-TCTGCGGATCAACA---AGCGCGCCG----TATATCCGTATATC--------CGGCTAATGAGCCCCACTGCTTGGCAGGTCGCCGAGGAGGACCTCCTGCCCCAGTACATCTGTGACCGGTGCCTGGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
No Reads

Generated: 10/20/2015 at 07:01 PM