ID:

dwi_147

 Coordinate:

scf2_1100000004511:3392101-3392166 -

 Confidence:

candidate

 Class:

Testes-restricted

 Genomic Locale:

antisense_to_intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-29.5 -29.4 -29.1

Flybase annnotation

Antisense to intron [Dwil\GK17265-in]

No Repeatable elements found

Sense Strand Reads

AAACTTAGTGATCGTCGCAGGATCATAAAAATCATATCTTATATGCAGAGTAGAGATCAAGTGAGCTTAGGAGCGTTATAAATCGAAATTTTCCTGCTTTCACTTGGTCTTATCCCGGCGTATAAAAAACAAATCAAATCATTTTATTTGTTTATTAAATAGACAG

***********************************...((((((((......(((((((((((((..((((((.(((.........))).))))))..)))))))))))))......))))))))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total V117

male body		 M045

female body

 V118

embryo

 M020

head

 V119

head
..................................................TAGAGATCAAGTGAGCTTAGGA.............................................................................................. 22 0 1 183.00 183 115 27 31 10 0
..................................................TAGAGATCAAGTGAGCTTAGG............................................................................................... 21 0 1 136.00 136 106 20 9 0 1
..................................................TAGAGATCAAGTGAGCTTAGGAT............................................................................................. 23 1 1 38.00 38 32 0 2 4 0
..................................................TAGAGATCAAGTGAGCTTAG................................................................................................ 20 0 1 34.00 34 32 2 0 0 0
..................................................TAGAGATCAAGTGAGCTTAGGAA............................................................................................. 23 1 1 27.00 27 21 2 4 0 0
..................................................TAGAGATCAAGTGAGCTTAGGAG............................................................................................. 23 0 1 23.00 23 16 2 5 0 0
..................................................TAGAGATCAAGTGAGCTTAGGT.............................................................................................. 22 1 1 17.00 17 17 0 0 0 0
..................................................TAGAGATCAAGTGAGCTTAGGTTT............................................................................................ 24 3 1 10.00 10 10 0 0 0 0
..................................................TAGAGATCAAGTGAGCTTA................................................................................................. 19 0 1 9.00 9 1 0 0 8 0
..................................................TAGAGATCAAGTGAGCTTAGGAAA............................................................................................ 24 2 1 9.00 9 6 2 0 1 0
...................................................AGAGATCAAGTGAGCTTAGGAG............................................................................................. 22 0 1 8.00 8 5 1 2 0 0
..................................................TAGAGATCAAGTGAGCTTAGGAAT............................................................................................ 24 2 1 5.00 5 2 0 0 3 0
....................................................GAGATCAAGTGAGCTTAGGAG............................................................................................. 21 0 1 3.00 3 2 1 0 0 0
...................................................AGAGATCAAGTGAGCTTAGGA.............................................................................................. 21 0 1 3.00 3 2 1 0 0 0
....................................................GAGATCAAGTGAGCTTAGGAGC............................................................................................ 22 0 1 3.00 3 1 0 1 1 0
..................................................TAGAGATCAAGTGAGCTT.................................................................................................. 18 0 2 3.00 6 0 0 0 6 0
............................................................................................................CTTGTCCCGGCCTATAAAAA...................................... 20 2 1 2.00 2 0 2 0 0 0
..................................................TAGAGATCAAGTGAGCTTAGGATTT........................................................................................... 25 3 1 2.00 2 2 0 0 0 0
..................................................TAGAGATCAAGTGAGCTTAGT............................................................................................... 21 1 1 2.00 2 2 0 0 0 0
..................................................TAGAGATCAAGTGAGCTTAGA............................................................................................... 21 1 1 2.00 2 2 0 0 0 0
..................................................TAGAGATCAAGGGAGCTTAGGA.............................................................................................. 22 1 1 2.00 2 0 1 1 0 0
..................................................TAGAGATCAGGTGAGCTTAGGA.............................................................................................. 22 1 1 2.00 2 1 0 1 0 0
..................................................TAGAGATCAAGTGAGCTTT................................................................................................. 19 1 2 1.50 3 0 0 0 3 0
..................................................TAGAGATCAAGTGGGCTTAGGAT............................................................................................. 23 2 1 1.00 1 1 0 0 0 0
..................................................TAGGGATCAAGTGAGCTTAGGA.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
..................................................TAGAGATCCAGTGAGCTTAGGA.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
..................................................TAGAGATCAAGTGAGCTTAGGATT............................................................................................ 24 2 1 1.00 1 0 0 0 1 0
...................................................AGAGATCAAGTGAGCTTAGGAGTT........................................................................................... 24 2 1 1.00 1 1 0 0 0 0
..................................................TAGCGATCAAGTGAGCTTAGGA.............................................................................................. 22 1 1 1.00 1 0 0 1 0 0
..................................................TAGAGATCAAGTGGGCTTAGGTT............................................................................................. 23 3 1 1.00 1 1 0 0 0 0
..................................................TAGAGACCAAGTGAGCTTAGG............................................................................................... 21 1 1 1.00 1 1 0 0 0 0
...................................................TGAGATCAAGTGAGCTTAGGAG............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
..................................................TAGAGATCAAGTGAGCTTAGGTC............................................................................................. 23 2 1 1.00 1 1 0 0 0 0
..................................................TAGAGATCAAGTGGGCTTAGGA.............................................................................................. 22 1 1 1.00 1 0 0 0 1 0
..................................................TAGAGATCAAGTGAGCGTAGGA.............................................................................................. 22 1 1 1.00 1 0 0 1 0 0
....................................................GAGATCAAGTGAGCTTAGGA.............................................................................................. 20 0 1 1.00 1 0 1 0 0 0
..................................................TAGATATCTAGTGAGCTTAGGA.............................................................................................. 22 2 1 1.00 1 1 0 0 0 0
..................................................TAGAGATCAAGTGAGCTTAGGATAG........................................................................................... 25 2 1 1.00 1 1 0 0 0 0
..................................................TAGAGATCAAGTGAGCTTATGA.............................................................................................. 22 1 1 1.00 1 0 0 1 0 0
..................................................TAGAGATCAAGTGAGCTTAGGC.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
..................................................TAGAGATCAAGTTAGCTTAGGAT............................................................................................. 23 2 1 1.00 1 0 0 0 1 0
....................................................TAGATCAAGTGAGCTTAGGAG............................................................................................. 21 1 1 1.00 1 0 0 1 0 0
..................................................TAGAGCTCAAGTGAGCTTAGGAG............................................................................................. 23 1 1 1.00 1 0 0 1 0 0
..................................................TAGATATCAAGTGAGCTTAGGA.............................................................................................. 22 1 1 1.00 1 0 0 1 0 0
...................................................AGAGATCAAGTGAGCTTAGGAA............................................................................................. 22 1 1 1.00 1 0 1 0 0 0
..................................................TAGAGATCAAGTGAGCTTAGGG.............................................................................................. 22 1 1 1.00 1 0 0 0 1 0
..................................................TAGAGATCAAGTGAGCTTAGGAAAA........................................................................................... 25 3 1 1.00 1 1 0 0 0 0
..................................................TAGAGATCAAGTGAGCTTACGA.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
..................................................TAGAGATCAAGTGAGTTTAGGA.............................................................................................. 22 1 1 1.00 1 0 0 1 0 0
..................................................TAGAGATCGAGTGAGCTTAGG............................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................TAGAGATCAAGTGAGCTTAGGTT............................................................................................. 23 2 1 1.00 1 1 0 0 0 0
..................................................TAGAGATCAAGTGGGCTTAGG............................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................TAGAGATCAAGTGAGCTTAGAA.............................................................................................. 22 1 1 1.00 1 1 0 0 0 0
..................................................TAGAGATCAAGTGAGCTTAGC............................................................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................TAGAGATCAAGTGAGCTTAT................................................................................................ 20 1 2 0.50 1 1 0 0 0 0
......................................................................................................CGTGGTCCCATCCCGGCG.............................................. 18 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

TTTGAATCACTAGCAGCGTCCTAGTATTTTTAGTATAGAATATACGTCTCATCTCTAGTTCACTCGAATCCTCGCAATATTTAGCTTTAAAAGGACGAAAGTGAACCAGAATAGGGCCGCATATTTTTTGTTTAGTTTAGTAAAATAAACAAATAATTTATCTGTC

***********************************...((((((((......(((((((((((((..((((((.(((.........))).))))))..)))))))))))))......))))))))......*********************************** 		Read size # Mismatch Hit Count Total Norm Total V118

embryo

 V117

male body		 V119

head

 M020

head
...............................................................TCGAAACCTCGGAATATATAG.................................................................................. 21 3 2 0.50 1 1 0 0 0
....................................................................................................................................TAGTGGAGGAAAATAAACAAATA........... 23 3 3 0.33 1 0 1 0 0
.....ATTACTAGTAGCGTCCAAGT............................................................................................................................................. 20 3 9 0.11 1 0 0 1 0
.....ATTACTAGAAGCGTCCAAGT............................................................................................................................................. 20 3 9 0.11 1 0 1 0 0
................................................................CGAAACCTCGGAATATATAG.................................................................................. 20 3 10 0.10 1 1 0 0 0
............................................................CAATGGAATCCTGGCAATA....................................................................................... 19 3 11 0.09 1 0 0 0 1
..........................................................................................................................ATTTTTTGATTAGGTTAGTAA....................... 21 2 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004511:3392051-3392216 - dwi_147 candidate AAACTTAGTGATCGTCGCAGGATCATAAAAATCATATCTTATATGCAGAGTAGAGATCAAGTGAGCTTAGGAGCGTTATAAATCGAAATTTTCCTGCTTTCACTTGGTCTTATCCCGGCGTATAAAAAACAAATCAAATCATTTTATTTGTTTATTAAATAGACAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AAACTTAGTGATCGTCGCAGGATCATAAAAATCATATCTTATATGCAGAGTAGAGATCAAGTGAGCTTAGGAGCGTTATAAATCGAAATTTTCCTGCTTTCACTTGGTCTTATCCCGGCGTATAAAAAACAAATCAAATCATTTTATTTGTTTATTAAATAGACAGSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..................................................TAGAGATCAAGTGAGCTTAGGA..............................................................................................221183.001831027115310
..................................................TAGAGATCAAGTGAGCTTAGG...............................................................................................211136.0013602010691
..................................................TAGAGATCAAGTGAGCTTAGGAT.............................................................................................23138.0038403220
..................................................TAGAGATCAAGTGAGCTTAG................................................................................................20134.0034023200
..................................................TAGAGATCAAGTGAGCTTAGGAA.............................................................................................23127.0027022140
..................................................TAGAGATCAAGTGAGCTTAGGAG.............................................................................................23123.0023021650
..................................................TAGAGATCAAGTGAGCTTAGGT..............................................................................................22117.0017001700
..................................................TAGAGATCAAGTGAGCTTAGGTTT............................................................................................24110.0010001000
..................................................TAGAGATCAAGTGAGCTTA.................................................................................................1919.00980100
..................................................TAGAGATCAAGTGAGCTTAGGAAA............................................................................................2419.00912600
...................................................AGAGATCAAGTGAGCTTAGGAG.............................................................................................2218.00801520
..................................................TAGAGATCAAGTGAGCTTAGGAAT............................................................................................2415.00530200
....................................................GAGATCAAGTGAGCTTAGGAG.............................................................................................2113.00301200
...................................................AGAGATCAAGTGAGCTTAGGA..............................................................................................2113.00301200
....................................................GAGATCAAGTGAGCTTAGGAGC............................................................................................2213.00310110
..................................................TAGAGATCAAGTGAGCTT..................................................................................................1823.00660000
..................................................TAGAGATCAAGTGAGCTTAGGATTT...........................................................................................2512.00200200
..................................................TAGAGATCAAGTGAGCTTAGT...............................................................................................2112.00200200
..................................................TAGAGATCAAGTGAGCTTAGA...............................................................................................2112.00200200
..................................................TAGAGATCAAGTGAGCTTT.................................................................................................1921.50330000
..................................................TAGAGATCAAGTGAGCTTAGGATT............................................................................................2411.00110000
...................................................AGAGATCAAGTGAGCTTAGGAGTT...........................................................................................2411.00100100
..................................................TAGAGATCAAGTGAGCTTAGGTC.............................................................................................2311.00100100
....................................................GAGATCAAGTGAGCTTAGGA..............................................................................................2011.00101000
..................................................TAGAGATCAAGTGAGCTTAGGC..............................................................................................2211.00100100
...................................................AGAGATCAAGTGAGCTTAGGAA.............................................................................................2211.00101000
..................................................TAGAGATCAAGTGAGCTTAGGG..............................................................................................2211.00110000
..................................................TAGAGATCAAGTGAGCTTAGGAAAA...........................................................................................2511.00100100
..................................................TAGAGATCAAGTGAGCTTAGGTT.............................................................................................2311.00100100
..................................................TAGAGATCAAGTGAGCTTAGC...............................................................................................2111.00100100
..................................................TAGAGATCAAGTGAGCTTAT................................................................................................2020.50100100

Generated: 10/20/2015 at 06:47 PM