ID:

dwi_140

 Coordinate:

scf2_1100000004909:7956426-7956530 +

 Confidence:

Known Ortholog

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-36.8 -36.8 -36.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTAGCTTAAATGCACAATTTATGCACTATGGAAATAATTAATTGGATATTGGTTGGTATTATCGCAGCAAGTTTCCGGGATATCGTACTGTATTTCTAAACATTTCATATACAATACGAAACCTCAGAAATTTGCTGCGGTTAGTTACCGTTAACAACTCATAAGAAAGGAGAGAATAAAAATGATCAATATACATGTGTGTGTG

******************************************************((((..(((((((((((((((.(((...(((((.(((((...............))))).)))))...))).)))))))))))))))....))))..****************************************************** 		Read size # Mismatch Hit Count Total Norm Total M020

head

 V117

male body		 V119

head

 V118

embryo

 M045

female body
.....................................................................AGTTTCCGGGATATCGTACTGTA................................................................................................................. 23 0 1 290.00 290 236 53 0 1 0
.................................................................................................................ATACGAAACCTCAGAAATTTGCT..................................................................... 23 0 1 173.00 173 10 81 66 15 1
.......................................................................TTTCCGGGATATCGTACTGTAT................................................................................................................ 22 0 1 161.00 161 123 34 2 0 2
.....................................................................AGTTTCCGGGATATCGTACTGT.................................................................................................................. 22 0 1 139.00 139 49 89 1 0 0
.....................................................................AGTTTCCGGGATATCGTACTGTAA................................................................................................................ 24 1 1 124.00 124 103 21 0 0 0
.....................................................................AGTTTCCGGGATATCGTAC..................................................................................................................... 19 0 1 38.00 38 38 0 0 0 0
........................................................................TTCCGGGATATCGTACTGTATTT.............................................................................................................. 23 0 1 33.00 33 30 3 0 0 0
.....................................................................AGTTTCCGGGATATCGTACTG................................................................................................................... 21 0 1 21.00 21 0 20 1 0 0
........................................................................TTCCGGGATATCGTACTGTATT............................................................................................................... 22 0 1 16.00 16 13 3 0 0 0
.................................................................................................................ATACGAAACCTCAGAAATTTGC...................................................................... 22 0 1 13.00 13 3 3 4 2 1
.................................................................................................................ATACGAGACCTCAGAAATTTGCT..................................................................... 23 1 1 7.00 7 2 1 4 0 0
.......................................................................TTTCCGGGATATCGTACTGTATT............................................................................................................... 23 0 1 7.00 7 5 2 0 0 0
.....................................................................AGTTTCCGGGATATCGTACTGTC................................................................................................................. 23 1 1 7.00 7 6 1 0 0 0
..................................................................................................................TACGAAACCTCAGAAATTTGCT..................................................................... 22 0 1 6.00 6 0 4 2 0 0
.....................................................................AGTTTCCGGGATATCGTACTGC.................................................................................................................. 22 1 1 6.00 6 6 0 0 0 0
.....................................................................AGTTTCCGGGATATCGTACT.................................................................................................................... 20 0 1 6.00 6 1 5 0 0 0
.......................................................................TTTCCGGGATATCGTACTGTAC................................................................................................................ 22 1 1 6.00 6 6 0 0 0 0
.....................................................................AGTTTCCGGGATATCGTACTGTAT................................................................................................................ 24 0 1 6.00 6 5 0 1 0 0
.......................................................................TTTCCGGGATATCGTACTGTA................................................................................................................. 21 0 1 5.00 5 4 1 0 0 0
................................................................................................................AATACGAAACCTCAGAAATTTG....................................................................... 22 0 1 5.00 5 3 2 0 0 0
.........................................................................TCCGGGATATCGTACTGTATTT.............................................................................................................. 22 0 1 5.00 5 5 0 0 0 0
......................................................................GTTTCCGGGATATCGTACTGTA................................................................................................................. 22 0 1 4.00 4 3 1 0 0 0
.....................................................................AGTTTCCGGGATATCGTACTGG.................................................................................................................. 22 1 1 4.00 4 4 0 0 0 0
.....................................................................ATTTTCCGGGATATCGTACTGTA................................................................................................................. 23 1 1 3.00 3 3 0 0 0 0
.....................................................................GGTTTCCGGGATATCGTACTGTA................................................................................................................. 23 1 1 3.00 3 3 0 0 0 0
.................................................................................................................ATACGAAACCTCGGAAATTTGCT..................................................................... 23 1 1 3.00 3 1 1 1 0 0
.....................................................................AGTTTCCGGGATATCGTACTGTAC................................................................................................................ 24 1 1 3.00 3 3 0 0 0 0
.....................................................................GGTTTCCGGGATATCGTACTGT.................................................................................................................. 22 1 1 3.00 3 3 0 0 0 0
.................................................................................................................ATACGAAACCTCAGAAATTTGCTT.................................................................... 24 1 1 3.00 3 0 2 1 0 0
.................................................................................................................GTACGAAACCTCAGAAATTTGCT..................................................................... 23 1 1 3.00 3 1 0 2 0 0
.......................................................................TTTCCGGGATATCGTGCTGTAT................................................................................................................ 22 1 1 2.00 2 2 0 0 0 0
.....................................................................AGTTTCCGGGATATCGTACTGTAAA............................................................................................................... 25 2 1 2.00 2 1 1 0 0 0
.................................................................................................................GTACGAGACCTCAGAAATTTGCT..................................................................... 23 2 1 2.00 2 1 0 1 0 0
.....................................................................AGTTTCCGGGATATCGTACTGTT................................................................................................................. 23 1 1 2.00 2 0 2 0 0 0
.................................................................................................................ATACGAAACCTCAGAAATTTG....................................................................... 21 0 1 2.00 2 1 1 0 0 0
.......................................................................TTTCCGGGATATCGTACTGTATAA.............................................................................................................. 24 2 1 2.00 2 2 0 0 0 0
.................................................................................................................ATACGAAACCTCAGAAATTTGCTA.................................................................... 24 1 1 2.00 2 0 1 1 0 0
.................................................................................................................ATACGAAACCTCAGAAATTTGCC..................................................................... 23 1 1 2.00 2 1 1 0 0 0
........................................................................TTCCGGGATATCGTACTGTAT................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0
.......................................................................TTTCCGGGATATCGTACTGTAA................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0
.....................................................................AGTTTCGGGGATATCGTACTGTA................................................................................................................. 23 1 1 1.00 1 0 1 0 0 0
.................................................................................................................ATACGAACCCTCAGAAATTTGCTT.................................................................... 24 2 1 1.00 1 0 0 0 1 0
.................................................................................................................ATACTAAACCTCAGAAATTTGCT..................................................................... 23 1 1 1.00 1 0 0 1 0 0
..................................................................................................................TACGAGACCTCAGAAATTTGCT..................................................................... 22 1 1 1.00 1 0 0 1 0 0
...................................................................CAAGTTTCCGGGATATCGTACT.................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
.....................................................................AGTTTCCGTGATATCGTACTGTA................................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
.......................................................................TTTCCGGCATATCGTACTGTAT................................................................................................................ 22 1 1 1.00 1 0 1 0 0 0
.....................................................................AGTTTCCGGGATATCGTACTGTAG................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0
.....................................................................AGTTTCCGGGATATCGTA...................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0
.....................................................................GGTTTCCGGGATATCGTACTGC.................................................................................................................. 22 2 1 1.00 1 1 0 0 0 0
.....................................................................AGTTTCCGGGATATCTTACTGT.................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0
.....................................................................AGTTTCCGGGATCTCGTACT.................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0
................................................................................................................AATACGAAACCTCAGAAATTTGT...................................................................... 23 1 1 1.00 1 0 0 1 0 0
.....................................................................AGTTTCCGGAATATCGTACTGTA................................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
.....................................................................CGTTTCCGGGATATCGTACTGTA................................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
.....................................................................AGTTTCCGGGATATCGTACTGTCA................................................................................................................ 24 2 1 1.00 1 1 0 0 0 0
......................................................................GTTTCCGGGATATCGTACTGTAAA............................................................................................................... 24 2 1 1.00 1 1 0 0 0 0
................................................................................................................AATACGAAACCTCATAAATTTGCT..................................................................... 24 1 1 1.00 1 0 0 0 1 0
.....................................................................GGTTTCCGGGATATCGTAC..................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0
........................................................................TTCCGGGATATCGTACTGTATTA.............................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
.................................................................................................................ATTCGAAACCTCAGAAATTTGCT..................................................................... 23 1 1 1.00 1 0 0 1 0 0
....................................................................GGGTTTCCGGGATATCGTACTG................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0
....................................................................AAGTTTCCGGGATATCGTACTA................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0
.....................................................................GGTTTCCGGGATATCGTACTGTATT............................................................................................................... 25 1 1 1.00 1 1 0 0 0 0
......................................................................GTTTCCGGGATATCGTACTGTAA................................................................................................................ 23 1 1 1.00 1 1 0 0 0 0
.....................................................................ATTTTCCGGGATATCGTACTGT.................................................................................................................. 22 1 1 1.00 1 1 0 0 0 0
.......................................................................TTTCCGGGATATCTTACTGTAT................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0
....................................................................AAGTTTCCGGGATATCGTACTG................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0
.....................................................................AGCTTCCGGGATATCGTACTGTA................................................................................................................. 23 1 1 1.00 1 0 1 0 0 0
....................................................................AAGTTTCCGGGATATCGTACT.................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0
.................................................................................................................ATACGAGACCTCGGAAATTTGC...................................................................... 22 2 1 1.00 1 1 0 0 0 0
.....................................................................AGTTTCCGGGATATCGTACTGTCC................................................................................................................ 24 2 1 1.00 1 1 0 0 0 0
.......................................................................TTTCCGGGAGATCTTACTGTAT................................................................................................................ 22 2 1 1.00 1 1 0 0 0 0
.....................................................................AGTTTCCTGGATATCGTACTGTAA................................................................................................................ 24 2 1 1.00 1 1 0 0 0 0
.......................................................................TTTCCGGGATATCGTACTGTATTAA............................................................................................................. 25 2 1 1.00 1 1 0 0 0 0
.....................................................................GGTTTCCGGGATATCGCACTGT.................................................................................................................. 22 2 1 1.00 1 1 0 0 0 0
.....................................................................AGTTTCCGGGATACCGTACTGT.................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0
........................................................................TTCCGGGATATCCTACTGTATTT.............................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
.................................................................................................................TTACGAAACCTCAGAAATTTGCT..................................................................... 23 1 1 1.00 1 0 0 1 0 0
.......................................................................TTTCCGGGATATCGTACTGTAG................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0
.....................................................................AGTTTCCGGGATATCGTACTGA.................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0
.....................................................................TGTTTCCGGGATATCGTACTGTA................................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
................................................................................................................AATGCGAAACCTCGGAAATTTG....................................................................... 22 2 2 0.50 1 0 1 0 0 0
................................................................................................................AATGCGAGACCTCGGAAATTTG....................................................................... 22 3 2 0.50 1 1 0 0 0 0
..................................................................................................................................................................AAGAAAAGAGAGAATAAAAA....................... 20 1 10 0.10 1 0 0 1 0 0
....................................................................................................................................................................GAATGGAGAAAATAAAAATG..................... 20 2 15 0.07 1 0 0 0 0 1

Anti-sense strand reads

AATCGAATTTACGTGTTAAATACGTGATACCTTTATTAATTAACCTATAACCAACCATAATAGCGTCGTTCAAAGGCCCTATAGCATGACATAAAGATTTGTAAAGTATATGTTATGCTTTGGAGTCTTTAAACGACGCCAATCAATGGCAATTGTTGAGTATTCTTTCCTCTCTTATTTTTACTAGTTATATGTACACACACAC

******************************************************((((..(((((((((((((((.(((...(((((.(((((...............))))).)))))...))).)))))))))))))))....))))..****************************************************** 		Read size # Mismatch Hit Count Total Norm Total M020

head

 V118

embryo

 M045

female body
...........................................................................................................ATATGTTATGCTTTGGAGTCTT............................................................................ 22 0 1 1.00 1 0 1 0
............................................................................................................TATGTTATGCTTTGGAGTCTT............................................................................ 21 0 1 1.00 1 1 0 0
....................................................................................................................................................TGAATTGTTGAGGATTCTTTC.................................... 21 3 13 0.15 2 2 0 0
...........................................................................................................................................CAATCAATGGCACTTCTT................................................ 18 2 8 0.13 1 0 0 1
..........................................................................................................................................CCAATCAAGGGCAAATGTC................................................ 19 3 20 0.05 1 0 0 1
...............................................................................................................................................................GGATTCTTTCGTCTCTTAG........................... 19 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004909:7956376-7956580 + dwi_140 confident TTAGCTTAAATGCACAATTTATGCACTATGGAAATAATTAATTGGATATTGGTTGGTATTATCGCAGCAAGTTTCCGGGATATCGTA----------------------------CTGTATT---------TCTAAACATTTCATA-TACAATACGA---------AACCTCAGAAATTTGCTGCGGTTAGTTACCGTT-AACAACTCATAAGAAA-GGAGAGAA------------TAAAA--------ATGATCAATATACATGTGTGTGTG
droVir3 scaffold_13042:907857-907872 - T----------------------------------------------------GTGTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTG
droMoj3 scaffold_6496:4195040-4195086 - C----------------------------------------------------AAAAAAAATGAGAAAATACCT-------------------------------------------------------------------------------------------------------------ATACATA------------------------------------------------------------------CATATGCATGTGTGTGTG
droGri2 scaffold_15081:2044829-2044996 - dgr_10 confident T-----------------------------------------------------GGTATTGCTGCTGCAAATTTCCGCGGTGTCGTA----------------------------TTGTATTATCAAAATGGTAT---ACTCTGAACCACAATACGA---------TTCCTCAGAAATTCGCTGCTGTAAGTTACCGTT-TTCAACCGTATAGCAACTGTGCCGATAAACCTATC-------CCAGTCTATCGA----TAGACA-ACGATTGTC
dp5 3:5184418-5184437 + T----------------------------------------------------CCATGTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTG
droAna3 scaffold_13417:2468029-2468191 - T-----------------------------------------------------GGTATTATGGCAGCGAGTTTCCGGGATCTCGTA----------------------------CTGTATG---------AAGT---TTTCTATA-TACAATTCGA---------AAACTCAGAAACTTCCTGCCGTGAGCTACCATTGATCAACGGCTGAGTATGCGACC-GGAAAGGGGACG-------CGAATGCGAGGACTAAAGGATGCGCGGATGCG
droBip1 scf7180000395874:40395-40520 - G-------------------------------------------GGGAGTGCCTGGTATTATGGCAGCGAGTTTCCGGGATCTCGTA----------------------------GTGTATG---------AAGT---TTTATAAA-TACAATTCGA---------AAACTCAGAAACTTTCTGCCTTGAAGTACATTC-ATCAACGGCCGAGTA------------------------------------------------------ATATA
droKik1 scf7180000302517:1183445-1183567 + T-----------------------------------------------------GGTATAGCCGCAGAAAGTTTCCGAG-TTTCGTA----------------------------ATGTATG---------GTTA--TATTTGAAA-TACAGTACGA---------GACATCAGAAATTTTCGGCAGTTAGCTACCGTA-AACAACCAAAAATGGA-GCAAGGAG------------CA----------------------------------A
droFic1 scf7180000454073:1733616-1733722 + T----------------------------------------------------CGGTATTATCGCAGCAAGTTTCCGGGACTTCGTA----------------------------CTGTATG---------AAGA---ATTCTATA-TACAATACGA---------AACCTCAGAAATTTATTGCAATGAACCACCTTT-AACTATTGAT----------------------------------------------------------------
droEle1 scf7180000490751:1118514-1118622 + T----------------------------------------------------TGGTATTATCGCAGCAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------ACAA---ATTCTATA-TACAATACGA---------AACCTTAGAAATTTTCTGAAGTTAGCTACCATA-CACTACCAATAA--------------------------------------------------------------
droRho1 scf7180000761121:190394-190496 - T----------------------------------------------------TGGTATTATCGCAGCAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------ACAA---ATTCTATA-TACAATACGA---------AACCTTAGAAATTTTCTGCAGTTATCTACCATT-AACTAC--------------------------------------------------------------------
droBia1 scf7180000302069:1151364-1151463 - T----------------------------------------------------TGGTATTATCGCAACAAGTTTCCGGGATTTTGTA----------------------------TTGTATG---------ACTA--GATTCTATA-TACAATACGA---------AACCTCAGAAATTTTCTGCAGTTAACTACCATA-AA------------------------------------------------------------------------
droTak1 scf7180000415169:845124-845246 - T----------------------------------------------------TGGTATTATCGCAACAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------CTGA---ATTCTATA-TACAATACGA---------AAGCTCAGAAATTTTCTGCAGTTAACTACCATT-AACTACTTACTACGAA-GGATGGAT------------T-----------------------------------A
droEug1 scf7180000409230:879979-880090 - T----------------------------------------------------TGGTATTATCGCAATAAGTTCCTGGGATTTCGCA----------------------------CTGTATT---------ACGA---TTTTTACA-TACAATACGA---------AAGCTCAGAAACTAACTGCAATTAACTACCGTA-AACTACGGATGAGA-----------------------------------------------------------A
dm3 chrX:19452595-19452757 + dme-mir-4966-2 Known_mirbase T----------------------------------------------------TGGTATTATGGCAAAAAGTTTCCAGGACATTGACAACCTATATATGTATGTACTTGTCGGCACTGGAGT---------AC---------TAAA-TATATTGCACATGTTCATGCATGTTCAACATATTTAGCACTCAAGTACCGAA-AA--------------------------ATGAACAACTAAAA--------GCGG----AGAATACGAAAGTG-C
droSim2 x:18341756-18341796 + T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCAGGACATCGAG----------------------------CTGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_8:1734626-1734666 + T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCAGGACATCGAG----------------------------CTGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:11886139-11886241 - dya_51 novel T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCGGGACTTCGTA----------------------------CTGTATG---------ACAG---ACTATATA-TACAATACGA---------AGCCTCTGAAATTTTCTGCGCTCAAGTACCAAA-AACTAC--------------------------------------------------------------------
droEre2 scaffold_4690:9688639-9688679 + T----------------------------------------------------TGGTATTAAGGCAACAAGTTTCAGGGACTTCGCA----------------------------CTGTAT---------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TTAGCTTAAATGCACAATTTATGCACTATGGAAATAATTAATTGGATATTGGTTGGTATTATCGCAGCAAGTTTCCGGGATATCGTA----------------------------CTGTATT---------TCTAAACATTTCATA-TACAATACGA---------AACCTCAGAAATTTGCTGCGGTTAGTTACCGTT-AACAACTCATAAGAAA-GGAGAGAA------------TAAAA--------ATGATCAATATACATGTGTGTGTGSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTA..........................................................................................................................................................231290.0029023605310
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTGCT...........................................................................................231173.00173101811566
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTAT.........................................................................................................................................................221161.0016112323402
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGT...........................................................................................................................................................221139.001394908901
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTAA.........................................................................................................................................................241124.0012410302100
.....................................................................AGTTTCCGGGATATCGTA----------------------------C..............................................................................................................................................................19138.0038380000
........................................................................TTCCGGGATATCGTA----------------------------CTGTATT---------T..............................................................................................................................................23133.0033300300
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTG............................................................................................................................................................21121.0021002001
........................................................................TTCCGGGATATCGTA----------------------------CTGTATT---------...............................................................................................................................................22116.0016130300
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTGC............................................................................................22113.001331324
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTATT---------...............................................................................................................................................2317.00750200
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTC..........................................................................................................................................................2317.00760100
........................................................................................................................................................TACGA---------AACCTCAGAAATTTGCT...........................................................................................2216.00600402
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGC...........................................................................................................................................................2216.00660000
.....................................................................AGTTTCCGGGATATCGTA----------------------------CT.............................................................................................................................................................2016.00610500
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTAC.........................................................................................................................................................2216.00660000
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTAT.........................................................................................................................................................2416.00650001
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTA..........................................................................................................................................................2115.00540100
......................................................................................................................................................AATACGA---------AACCTCAGAAATTTG.............................................................................................2215.00530200
.........................................................................TCCGGGATATCGTA----------------------------CTGTATT---------T..............................................................................................................................................2215.00550000
......................................................................GTTTCCGGGATATCGTA----------------------------CTGTA..........................................................................................................................................................2214.00430100
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGG...........................................................................................................................................................2214.00440000
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTAC.........................................................................................................................................................2413.00330000
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTGCTT..........................................................................................2413.00300201
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTAAA---------...............................................................................................................................................2512.00210100
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTT..........................................................................................................................................................2312.00200200
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTG.............................................................................................2112.00210100
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTATA---------A..............................................................................................................................................2412.00220000
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTGCTA..........................................................................................2412.00200101
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTGCC...........................................................................................2312.00210100
........................................................................TTCCGGGATATCGTA----------------------------CTGTAT.........................................................................................................................................................2112.00220000
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTAA.........................................................................................................................................................2211.00110000
...................................................................CAAGTTTCCGGGATATCGTA----------------------------CT.............................................................................................................................................................2211.00110000
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTAG.........................................................................................................................................................2411.00110000
.....................................................................AGTTTCCGGGATATCGTA----------------------------...............................................................................................................................................................1811.00100100
......................................................................................................................................................AATACGA---------AACCTCAGAAATTTGT............................................................................................2311.00100001
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTCA.........................................................................................................................................................2411.00110000
......................................................................GTTTCCGGGATATCGTA----------------------------CTGTAAA---------...............................................................................................................................................2411.00110000
........................................................................TTCCGGGATATCGTA----------------------------CTGTATT---------A..............................................................................................................................................2311.00110000
....................................................................AAGTTTCCGGGATATCGTA----------------------------CTA............................................................................................................................................................2211.00100100
......................................................................GTTTCCGGGATATCGTA----------------------------CTGTAA.........................................................................................................................................................2311.00110000
....................................................................AAGTTTCCGGGATATCGTA----------------------------CTG............................................................................................................................................................2211.00100100
....................................................................AAGTTTCCGGGATATCGTA----------------------------CT.............................................................................................................................................................2111.00100001
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTCC.........................................................................................................................................................2411.00110000
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTATT---------AA.............................................................................................................................................2511.00110000
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTAG.........................................................................................................................................................2211.00110000
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGA...........................................................................................................................................................2211.00100100
droVir3
T----------------------------------------------------GTGTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
No Reads
droMoj3
C----------------------------------------------------AAAAAAAATGAGAAAATACCT-------------------------------------------------------------------------------------------------------------ATACATA------------------------------------------------------------------CATATGCATGTGTGTGTGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
No Reads
droGri2
T-----------------------------------------------------GGTATTGCTGCTGCAAATTTCCGCGGTGTCGTA----------------------------TTGTATTATCAAAATGGTAT---ACTCTGAACCACAATACGA---------TTCCTCAGAAATTCGCTGCTGTAAGTTACCGTT-TTCAACCGTATAGCAACTGTGCCGATAAACCTATC-------CCAGTCTATCGA----TAGACA-ACGATTGTCSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
....................................................................AAATTTCCGCGGTGTCGTA----------------------------TTG............................................................................................................................................................22174.0074173
...................................................................CAAATTTCCGCGGTGTCGTA----------------------------TT.............................................................................................................................................................22154.0054153
...................................................................CAAATTTCCGCGGTGTCGTA----------------------------T..............................................................................................................................................................21120.0020020
....................................................................AAATTTCCGCGGTGTCGTA----------------------------TT.............................................................................................................................................................21116.0016115
....................................................................AAATTTCCGCGGTGTCGTA----------------------------T..............................................................................................................................................................2014.00404
.......................................................................................................................................................ATACGA---------TTCCTCAGAAATTCGCT...........................................................................................2313.00303
....................................................................AAATTTCCGCGGTGTCGTA----------------------------TTT............................................................................................................................................................2212.00202
...................................................................CAAATTTCCGCGGTGTCGTA----------------------------TTG............................................................................................................................................................2312.00202
...................................................................CAAATTTCCGCGGTGTCGTA----------------------------TTT............................................................................................................................................................2312.00202
.......................................................................................................................................................ATACGA---------TTCCTCAGAAATTCG.............................................................................................2112.00202
........................................................................................................................................................TACGA---------TTCCTCAGAAATTCGCT...........................................................................................2211.00101
...................................................................CAAATTTCCGCGGTGTCGTA----------------------------...............................................................................................................................................................2011.00101
.......................................................................................................................................................ATACGA---------TTCCTCAGAAATTCGCTT..........................................................................................2411.00101
dp5
T----------------------------------------------------CCATGTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
No Reads
droAna3
T-----------------------------------------------------GGTATTATGGCAGCGAGTTTCCGGGATCTCGTA----------------------------CTGTATG---------AAGT---TTTCTATA-TACAATTCGA---------AAACTCAGAAACTTCCTGCCGTGAGCTACCATTGATCAACGGCTGAGTATGCGACC-GGAAAGGGGACG-------CGAATGCGAGGACTAAAGGATGCGCGGATGCGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.......................................................................................................................................................ATTCGA---------AAACTCAGAAACTTCCT...........................................................................................23146.00463105829
......................................................................................................................................................AATTCGA---------AAACTCAGAAACTTC.............................................................................................22120.0020410447
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTG............................................................................................................................................................21117.00173000131
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTGT...........................................................................................................................................................22114.0014500180
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTGTA..........................................................................................................................................................23111.0011400241
.....................................................................................................................................................CAATTCGA---------AAACTCAGAAACTTC.............................................................................................23110.0010010423
........................................................................................................................................................TTCGA---------AAACTCAGAAACTTCCT...........................................................................................2216.006000114
.....................................................................................................................................................CAATTCGA---------AAACTCAGAAACTT..............................................................................................2214.004000022
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CT.............................................................................................................................................................2013.003000012
......................................................................................................................................................AATTCGA---------AAACTCAGAAACTTCC............................................................................................2313.003100011
.......................................................................................................................................................ATTCGA---------AAACTCAGAAACTTCCTT..........................................................................................2412.002100001
.......................................................................................................................................................ATTCGA---------AAACTCAGAAACTTC.............................................................................................2111.001000010
...................................................................CGAGTTTCCGGGATCTCGTA----------------------------CTGTATG---------A..............................................................................................................................................2811.001100000
.......................................................................TTTCCGGGATCTCGTA----------------------------CTGTAT.........................................................................................................................................................2211.001000010
.......................................................................................................................................................ATTCGA---------AAACTCAGAAACTTCCC...........................................................................................2311.001000001
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTT............................................................................................................................................................2111.001000010
......................................................................................................................................................AATTCGA---------AAACTCAGAAACTTT.............................................................................................2211.001100000
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTGTAAA---------...............................................................................................................................................2511.001000100
......................................................................................................................................................AATTCGA---------AAACTCAGAAACTTCA............................................................................................2311.001100000
.......................................................................................................................................................ATTCGA---------AAACTCAGAAACTTCC............................................................................................2211.001000001
....................................................................GAGTTTCCGGGATCTCGTA----------------------------CT.............................................................................................................................................................2111.001000010
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTA............................................................................................................................................................2111.001000010
......................................................................GTTTCCGGGATCTCGTA----------------------------CTG............................................................................................................................................................2011.001000100
....................................................................GAGTTTCCGGGATCTCGTA----------------------------CTG............................................................................................................................................................2211.001000010
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTGTAA.........................................................................................................................................................2411.001000010
.......................................................................TTTCCGGGATCTCGTA----------------------------CTGTATG---------...............................................................................................................................................2311.001100000
...........................................................................CGGGATCTCGTA----------------------------CTGTATG---------AAG............................................................................................................................................2211.001000010
...............................................................................................................................................ATA-TACAATTCGA---------AAACTCAGA...................................................................................................2211.001000010
......................................................................GTTTCCGGGATCTCGTA----------------------------CTGTT..........................................................................................................................................................2211.001100000
...................................................................CGAGTTTCCGGGATCTCGTA----------------------------C..............................................................................................................................................................2111.001000010
....................................................................GAGTTTCCGGGATCTCGTA----------------------------CTGA...........................................................................................................................................................2311.001000010
droBip1
G-------------------------------------------GGGAGTGCCTGGTATTATGGCAGCGAGTTTCCGGGATCTCGTA----------------------------GTGTATG---------AAGT---TTTATAAA-TACAATTCGA---------AAACTCAGAAACTTTCTGCCTTGAAGTACATTC-ATCAACGGCCGAGTA------------------------------------------------------ATATASizeHit CountTotal NormTotal
No Reads
droKik1
T-----------------------------------------------------GGTATAGCCGCAGAAAGTTTCCGAG-TTTCGTA----------------------------ATGTATG---------GTTA--TATTTGAAA-TACAGTACGA---------GACATCAGAAATTTTCGGCAGTTAGCTACCGTA-AACAACCAAAAATGGA-GCAAGGAG------------CA----------------------------------ASizeHit CountTotal NormTotal
No Reads
droFic1
T----------------------------------------------------CGGTATTATCGCAGCAAGTTTCCGGGACTTCGTA----------------------------CTGTATG---------AAGA---ATTCTATA-TACAATACGA---------AACCTCAGAAATTTATTGCAATGAACCACCTTT-AACTATTGAT----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
T----------------------------------------------------TGGTATTATCGCAGCAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------ACAA---ATTCTATA-TACAATACGA---------AACCTTAGAAATTTTCTGAAGTTAGCTACCATA-CACTACCAATAA--------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
T----------------------------------------------------TGGTATTATCGCAGCAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------ACAA---ATTCTATA-TACAATACGA---------AACCTTAGAAATTTTCTGCAGTTATCTACCATT-AACTAC--------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
T----------------------------------------------------TGGTATTATCGCAACAAGTTTCCGGGATTTTGTA----------------------------TTGTATG---------ACTA--GATTCTATA-TACAATACGA---------AACCTCAGAAATTTTCTGCAGTTAACTACCATA-AA------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
T----------------------------------------------------TGGTATTATCGCAACAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------CTGA---ATTCTATA-TACAATACGA---------AAGCTCAGAAATTTTCTGCAGTTAACTACCATT-AACTACTTACTACGAA-GGATGGAT------------T-----------------------------------ASizeHit CountTotal NormTotal
No Reads
droEug1
T----------------------------------------------------TGGTATTATCGCAATAAGTTCCTGGGATTTCGCA----------------------------CTGTATT---------ACGA---TTTTTACA-TACAATACGA---------AAGCTCAGAAACTAACTGCAATTAACTACCGTA-AACTACGGATGAGA-----------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
dm3
T----------------------------------------------------TGGTATTATGGCAAAAAGTTTCCAGGACATTGACAACCTATATATGTATGTACTTGTCGGCACTGGAGT---------AC---------TAAA-TATATTGCACATGTTCATGCATGTTCAACATATTTAGCACTCAAGTACCGAA-AA--------------------------ATGAACAACTAAAA--------GCGG----AGAATACGAAAGTG-CSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTT................................................................................................................2228267.001653400000000100200000000000104000000000000001010101000120000000000000000000000000000000000100200100110022000101020013016000001000000000001000000000000100000009200000000000000240200010153010790000042735664000026402720000001000000000031800112512006253310000000000110029001505616000100032143432171203700010303211312101932504001001701360000041324830012013020601100667543780
........................................................................................................................................................................TGTTCAACATATTTAGCACTCA....................................................................................2221704.503409000002000011100000000000900000000000000000010010000000000000000000000000000000000007001002416009401830018010001515087821380000000000000000000000000000010000000000000000000001000005310001000000087312700009301900000000000000000110011024105000300000000000002100601400000000040769000010000000000500000003180111000400000000013470000002000500100113690210
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGT.................................................................................................................212655.001310000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000100100100000000000000000000000000000000000000000000000000000000000000000000000000111000000000000302500001101000000000000000000010000000001011000000000000001000011000000000203110010000000000003010000000000000000031000001034600000090002000000561030
........................................................................................................................................................................TGTTCAACATATTTAGCACTC.....................................................................................212401.0080200000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000030010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026034000027090000000000000000000001101100000000000000000000300210320000000000298000000000000000210000011000000000300000000005200000000000010001319040
......................................................................................................................................................................CATGTTCAACATATTTAGCACT......................................................................................222213.50427000000000000000000000001000000000000000000000000000000000000000000000000000000000000100000010010010000000010000300000000000000000000000000000000000000000000000000000010000002110000000000111090000907000000000000000000000010110010000000000000000020020000000000001077001000000000000000001002020000000301100000102170000003000100000044040
........................................................................................................................................................................TGTTCAACATATTTAGCACT......................................................................................202114.502290000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000302000000000000000000000000000001000000000000000000000010000000000096000000000000000000000000000000000000000000001100000000000000000111000
.......................................................................................................................AGT---------AC---------TAAA-TATATTGCACATG..................................................................................................................22297.0019400000000000000000000000200000000000000000000000000000000000000000000000000000000010000010000170080010000000000300000000000000000000000000000000000000000000000000000000000003123010060000004010000090800000000000000000010000001001000000000000000002001000000000000003500001000000000000000000001000000000000000000370000000000000000033010
.......................................................................................................TACTTGTCGGCACTGGAGT---------...............................................................................................................................................19180.00800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000001000000000000000000010000000065000000001000000006000
.......................................................................................................TACTTGTCGGCACTGGAG.........................................................................................................................................................18165.0065000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000002400000000000000000000000200000000000010000000100000000000000000025000
.......................................................................................................................................................................ATGTTCAACATATTTAGCACTC.....................................................................................22264.5012900000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000010010010000000000300000000000000000000000000000000000000000000000000000000000000000000000000010021000010040000000000000000001000001100000000000000000000200100000000000000600000000000000000000000101000000010000000000421000000000000000116020
...........................................................................................................................................................................TCAACATATTTAGCACTCAAGT.................................................................................22259.00118000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104000030000000000000000000000000000000000000000000000000000000000000000001400100000000000000000000000000000000000000000810000000000000000012010
......................................................................................................GTACTTGTCGGCACTGGAG.........................................................................................................................................................19137.00370000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000034000000000000000002000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTC...............................................................................................................23232.0064000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000503000050200000000000000000000000000000000000000000000000002000000000000001400000000000000000000000000000000000100000000120000001000000000014000
...................................................................................................................................AC---------TAAA-TATATTGCACATGTT................................................................................................................21229.5059000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002400000000000000000000000000000000000000000000160000000000000000016010
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTCAT.............................................................................................................25225.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000200001010000000000000000000000000000000000000000000000000000000000000000140000000000000000000000000000000000000000000070000000000000000021000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTT...............................................................................................................23222.504500000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000100000000000180000000000000000000000000000000000000000000050000000000000000017000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCC....................................................................................22220.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000001020000000000000000001000000000000000000000000000000000000000000000130000000000000000000000000000000000000000000020000000000000000018000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATG..................................................................................................................20219.503900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000010000000000170000000000000000000000000000000000000000000010000000000000000018000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTC................................................................................................................22219.003800000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100001000000000000000000000000000000000000000000000000100000000000000010140000000000000001000000000100000000000000000010000000000000000014000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCT....................................................................................22218.00360000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000000000000001000000000000000000000000000000000000018000000000000000000000000000000000000000000002000000000000000009000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTCA..............................................................................................................24217.003400000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010000000000000000030000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000001000000000000000000000000000000000000000000020110000000000000001000000000000000000000000000020000000000000000010000
....................................................................................................ATGTACTTGTCGGCACTGGAG.........................................................................................................................................................21116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000014000000000000000000000
..........................................................................................................................................................................TTCAACATATTTAGCACTCAAGT.................................................................................23215.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000100000000000000000000000000100000000000000000000000000000000000000040000000000000000000000000000000000000000000019000000100000000002000
.....................................................................................................TGTACTTGTCGGCACTGGAG.........................................................................................................................................................20112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000010000002000
..........................................................................................................................................................................TTCAACATATTTAGCACTCAAG..................................................................................22210.5021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000104000000000000000000000000000000000000000000008000000000000000007000
.......................................................................................................................................................................ATGTTCAACATATTTAGCACT......................................................................................2129.5019000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000003000000100000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000004000000000000000006010
...........................................................................................................................................................................TCAACATATTTAGCACTCAAG..................................................................................2129.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000009000000000000000006000
...................................................................................................TATGTACTTGTCGGCACTGGAG.........................................................................................................................................................2219.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000000000000000000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTA...............................................................................................................2327.5015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000000100000000000000000000000000000006000000000000000000000000000000000000000000001000000000000000005000
....................................................................................................ATGTACTTGTCGGCACTGG...........................................................................................................................................................1917.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000001000
.......................................................................................................................AGT---------AC---------TAAA-TATATTGCACAT...................................................................................................................2126.5013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000004000000100000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000002000000000000000002000
..................................................................................................................ACTGGAGT---------AC---------TAAA-TATATTGCA......................................................................................................................2326.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000
..............................................................................................................................................TAAA-TATATTGCACATGTT................................................................................................................1926.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000010000000000000000000000000010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000007000
.......................................................................................................................AGT---------AC---------TAAA-TATATTGCACA....................................................................................................................2025.5011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000000000000000000000001000000000000000005000000000000000000000000000000000000000000000000000000000000003000
....................................................................................................................................C---------TAAA-TATATTGCACATGTT................................................................................................................2025.5011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000003000000000000000002000
.......................................................................................................................AGT---------AC---------TAAA-TATATTGCACATGT.................................................................................................................2325.5011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000010000006000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTCATG............................................................................................................2625.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000001010000000000000000000000000000000000001000000000000000000000000000000000000000000002000000000000000004000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACAT...................................................................................................................1925.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000100000000000000000000000000000000000000010000002000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCAT...................................................................................2324.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000004000
........................................................................................................................GT---------AC---------TAAA-TATATTGCACATG..................................................................................................................2123.507000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000021000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000
...................................................................................................................................AC---------TAAA-TATATTGCACATGT.................................................................................................................2023.507000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000001000000000000000005000
....................................................................................................................TGGAGT---------AC---------TAAA-TATATTGCA......................................................................................................................2123.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000004000000000000000000000
....................................................................................................................TGGAGT---------AC---------TAAA-TATATTGCAC.....................................................................................................................2223.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000001000000002000000000000000001000
........................................................................................................................................................................TGTTCAACATATTTAGCAC.......................................................................................1922.505000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000100000002000
......................................................................................................................................................................CATGTTCAACATATTTAGCAC.......................................................................................2122.505000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000002000000000000000001000
...................................................................................................................................AC---------TAAA-TATATTGCACATGTTCATG............................................................................................................2522.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000002000000000000000000000
.....................................................................................................TGTACTTGTCGGCACTGG...........................................................................................................................................................1812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
...................................................................................................................................AC---------TAAA-TATATTGCACATGTTCAT.............................................................................................................2422.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTCATGT...........................................................................................................2722.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000001000
...................................................................................................................................AC---------TAAA-TATATTGCACATGTTC...............................................................................................................2222.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000010000000000000000000000000001000000000000000000000
...................................................................................................................................AC---------TAAA-TATATTGCACATGTTCA..............................................................................................................2322.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................TTCAACATATTTAGCACTCA....................................................................................2022.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000003000
........................................................................................................................GT---------AC---------TAAA-TATATTGCACATGT.................................................................................................................2222.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000
...............................................................................................................................................AAA-TATATTGCACATGTT................................................................................................................1822.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................GTACTTGTCGGCACTGGAGT---------...............................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000
.........................................................................................................................................................................GTTCAACATATTTAGCACTCA....................................................................................2122.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000
..................................................................................................................ACTGGAGT---------AC---------TAAA-TATATTG........................................................................................................................2121.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACA....................................................................................................................1821.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TGTTCAACATATTTAGCACTTT....................................................................................2221.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCG....................................................................................2221.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTATC.............................................................................................................2521.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................CATGTTCAACATATTTAGCACTT.....................................................................................2321.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000001000000000000000000000
........................................................................................................................GT---------AC---------TAAA-TATATTGCACATGTTCATG............................................................................................................2721.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGC.................................................................................................................2121.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000001000
....................................................................................................................TGGAGT---------AC---------TAAA-TATATTGC.......................................................................................................................2021.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000002000000000000000000000
........................................................................................................................GT---------AC---------TAAA-TATATTGCACATGTT................................................................................................................2321.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................AACATATTTAGCACTCAAGT.................................................................................2021.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000
....................................................................................................ATGTACTTGTCGGCACTGGA..........................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.......................................................................................................................................................................ATGTTCAACATATTTAGCACTCC....................................................................................2321.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TACTTGTCGGCACTGGAA.........................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................GTATGTACTTGTCGGCACTGGAG.........................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCAATC.................................................................................2521.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGG.................................................................................................................2121.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................TACTTGTCGGCACTGGAGT---------AT---------C...................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCTT...................................................................................2321.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TGTTCAACATATTTAGCACTT.....................................................................................2121.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................TCAACATATTTAGCACTCAA...................................................................................2021.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000
...........................................................................................................................................................................................................................................ACTAAAA--------GCGG----AGAATACGAA......2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................TTCAACATATTTAGCACTCAAA..................................................................................2221.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................ACTTGTCGGCACTGGAGT---------...............................................................................................................................................1821.002000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................................................................................................................................................................TGTTCAACATATTTAGCA........................................................................................1821.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000
........................................................................TTCCAGGACATTGACAAC........................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTG...............................................................................................................2321.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
droSim2
T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCAGGACATCGAG----------------------------CTGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
No Reads
droSec2
T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCAGGACATCGAG----------------------------CTGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
No Reads
droYak3
T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCGGGACTTCGTA----------------------------CTGTATG---------ACAG---ACTATATA-TACAATACGA---------AGCCTCTGAAATTTTCTGCGCTCAAGTACCAAA-AACTAC--------------------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
......................................................................................................................................................AATACGA---------AGCCTCTGAAATTTT.............................................................................................221129.0012911211000150000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTGT...........................................................................................................................................................22184.00846031110180000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTTCT...........................................................................................23130.0030300000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTG............................................................................................................................................................21128.0028710000200000
......................................................................................................................................................AATACGA---------AGCCTCTGAAATTT..............................................................................................21123.0023211000010000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTGG...........................................................................................................................................................22118.0018180000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTGC...........................................................................................................................................................22111.0011110000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CT.............................................................................................................................................................2018.00800001160000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------C..............................................................................................................................................................1916.00660000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTGTT..........................................................................................................................................................2315.00550000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTGTA..........................................................................................................................................................2315.00550000000000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTTCTG..........................................................................................2415.00550000000000
......................................................................................................................................................AATACGA---------AGCCTCTGAAATT...............................................................................................2013.00330000000000
........................................................................................................................................................TACGA---------AGCCTCTGAAATTTTCT...........................................................................................2213.00330000000000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTTC............................................................................................2212.00210000010000
........................................................................................................................................................TACGA---------AGCCTCTGAAATTTTCTG..........................................................................................2312.00220000000000
..........................................................................CCGGGACTTCGTA----------------------------CTGTA..........................................................................................................................................................1811.00110000000000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTTCC...........................................................................................2311.00110000000000
.........................................................................TCCGGGACTTCGTA----------------------------CTGTATG---------A..............................................................................................................................................2211.00101000000000
......................................................................GTTTCCGGGACTTCGTA----------------------------CTGTT..........................................................................................................................................................2211.00110000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTT............................................................................................................................................................2111.00110000000000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTTCTGC.........................................................................................2511.00110000000000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTT.............................................................................................2111.00110000000000
........................................................................................................................................................TACGA---------AGCCTCTGAAATTTTC............................................................................................2111.00110000000000
.....................................................................................................................................................CAATACGA---------AGCCTCTGAAATTTT.............................................................................................2311.00100000100000
droEre2
T----------------------------------------------------TGGTATTAAGGCAACAAGTTTCAGGGACTTCGCA----------------------------CTGTAT---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
No Reads

Generated: 10/20/2015 at 07:44 PM

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004909:7956376-7956580 + dwi_140 confident TTAGCTTAAATGCACAATTTATGCACTATGGAAATAATTAATTGGATATTGGTTGGTATTATCGCAGCAAGTTTCCGGGATATCGTA----------------------------CTGTATT---------TCTAAACATTTCATA-TACAATACGA---------AACCTCAGAAATTTGCTGCGGTTAGTTACCGTT-AACAACTCATAAGAAA-GGAGAGAA------------TAAAA--------ATGATCAATATACATGTGTGTGTG
droVir3 scaffold_13042:907857-907872 - T----------------------------------------------------GTGTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTG
droMoj3 scaffold_6496:4195040-4195086 - C----------------------------------------------------AAAAAAAATGAGAAAATACCT-------------------------------------------------------------------------------------------------------------ATACATA------------------------------------------------------------------CATATGCATGTGTGTGTG
droGri2 scaffold_15081:2044829-2044996 - dgr_10 confident T-----------------------------------------------------GGTATTGCTGCTGCAAATTTCCGCGGTGTCGTA----------------------------TTGTATTATCAAAATGGTAT---ACTCTGAACCACAATACGA---------TTCCTCAGAAATTCGCTGCTGTAAGTTACCGTT-TTCAACCGTATAGCAACTGTGCCGATAAACCTATC-------CCAGTCTATCGA----TAGACA-ACGATTGTC
dp5 3:5184418-5184437 + T----------------------------------------------------CCATGTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTG
droAna3 scaffold_13417:2468029-2468191 - T-----------------------------------------------------GGTATTATGGCAGCGAGTTTCCGGGATCTCGTA----------------------------CTGTATG---------AAGT---TTTCTATA-TACAATTCGA---------AAACTCAGAAACTTCCTGCCGTGAGCTACCATTGATCAACGGCTGAGTATGCGACC-GGAAAGGGGACG-------CGAATGCGAGGACTAAAGGATGCGCGGATGCG
droBip1 scf7180000395874:40395-40520 - G-------------------------------------------GGGAGTGCCTGGTATTATGGCAGCGAGTTTCCGGGATCTCGTA----------------------------GTGTATG---------AAGT---TTTATAAA-TACAATTCGA---------AAACTCAGAAACTTTCTGCCTTGAAGTACATTC-ATCAACGGCCGAGTA------------------------------------------------------ATATA
droKik1 scf7180000302517:1183445-1183567 + T-----------------------------------------------------GGTATAGCCGCAGAAAGTTTCCGAG-TTTCGTA----------------------------ATGTATG---------GTTA--TATTTGAAA-TACAGTACGA---------GACATCAGAAATTTTCGGCAGTTAGCTACCGTA-AACAACCAAAAATGGA-GCAAGGAG------------CA----------------------------------A
droFic1 scf7180000454073:1733616-1733722 + T----------------------------------------------------CGGTATTATCGCAGCAAGTTTCCGGGACTTCGTA----------------------------CTGTATG---------AAGA---ATTCTATA-TACAATACGA---------AACCTCAGAAATTTATTGCAATGAACCACCTTT-AACTATTGAT----------------------------------------------------------------
droEle1 scf7180000490751:1118514-1118622 + T----------------------------------------------------TGGTATTATCGCAGCAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------ACAA---ATTCTATA-TACAATACGA---------AACCTTAGAAATTTTCTGAAGTTAGCTACCATA-CACTACCAATAA--------------------------------------------------------------
droRho1 scf7180000761121:190394-190496 - T----------------------------------------------------TGGTATTATCGCAGCAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------ACAA---ATTCTATA-TACAATACGA---------AACCTTAGAAATTTTCTGCAGTTATCTACCATT-AACTAC--------------------------------------------------------------------
droBia1 scf7180000302069:1151364-1151463 - T----------------------------------------------------TGGTATTATCGCAACAAGTTTCCGGGATTTTGTA----------------------------TTGTATG---------ACTA--GATTCTATA-TACAATACGA---------AACCTCAGAAATTTTCTGCAGTTAACTACCATA-AA------------------------------------------------------------------------
droTak1 scf7180000415169:845124-845246 - T----------------------------------------------------TGGTATTATCGCAACAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------CTGA---ATTCTATA-TACAATACGA---------AAGCTCAGAAATTTTCTGCAGTTAACTACCATT-AACTACTTACTACGAA-GGATGGAT------------T-----------------------------------A
droEug1 scf7180000409230:879979-880090 - T----------------------------------------------------TGGTATTATCGCAATAAGTTCCTGGGATTTCGCA----------------------------CTGTATT---------ACGA---TTTTTACA-TACAATACGA---------AAGCTCAGAAACTAACTGCAATTAACTACCGTA-AACTACGGATGAGA-----------------------------------------------------------A
dm3 chrX:19452595-19452757 + dme-mir-4966-2 Known_mirbase T----------------------------------------------------TGGTATTATGGCAAAAAGTTTCCAGGACATTGACAACCTATATATGTATGTACTTGTCGGCACTGGAGT---------AC---------TAAA-TATATTGCACATGTTCATGCATGTTCAACATATTTAGCACTCAAGTACCGAA-AA--------------------------ATGAACAACTAAAA--------GCGG----AGAATACGAAAGTG-C
droSim2 x:18341756-18341796 + T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCAGGACATCGAG----------------------------CTGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_8:1734626-1734666 + T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCAGGACATCGAG----------------------------CTGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:11886139-11886241 - dya_51 novel T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCGGGACTTCGTA----------------------------CTGTATG---------ACAG---ACTATATA-TACAATACGA---------AGCCTCTGAAATTTTCTGCGCTCAAGTACCAAA-AACTAC--------------------------------------------------------------------
droEre2 scaffold_4690:9688639-9688679 + T----------------------------------------------------TGGTATTAAGGCAACAAGTTTCAGGGACTTCGCA----------------------------CTGTAT---------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TTAGCTTAAATGCACAATTTATGCACTATGGAAATAATTAATTGGATATTGGTTGGTATTATCGCAGCAAGTTTCCGGGATATCGTA----------------------------CTGTATT---------TCTAAACATTTCATA-TACAATACGA---------AACCTCAGAAATTTGCTGCGGTTAGTTACCGTT-AACAACTCATAAGAAA-GGAGAGAA------------TAAAA--------ATGATCAATATACATGTGTGTGTGSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTA..........................................................................................................................................................231290.0029023605310
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTGCT...........................................................................................231173.00173101811566
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTAT.........................................................................................................................................................221161.0016112323402
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGT...........................................................................................................................................................221139.001394908901
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTAA.........................................................................................................................................................241124.0012410302100
.....................................................................AGTTTCCGGGATATCGTA----------------------------C..............................................................................................................................................................19138.0038380000
........................................................................TTCCGGGATATCGTA----------------------------CTGTATT---------T..............................................................................................................................................23133.0033300300
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTG............................................................................................................................................................21121.0021002001
........................................................................TTCCGGGATATCGTA----------------------------CTGTATT---------...............................................................................................................................................22116.0016130300
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTGC............................................................................................22113.001331324
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTATT---------...............................................................................................................................................2317.00750200
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTC..........................................................................................................................................................2317.00760100
........................................................................................................................................................TACGA---------AACCTCAGAAATTTGCT...........................................................................................2216.00600402
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGC...........................................................................................................................................................2216.00660000
.....................................................................AGTTTCCGGGATATCGTA----------------------------CT.............................................................................................................................................................2016.00610500
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTAC.........................................................................................................................................................2216.00660000
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTAT.........................................................................................................................................................2416.00650001
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTA..........................................................................................................................................................2115.00540100
......................................................................................................................................................AATACGA---------AACCTCAGAAATTTG.............................................................................................2215.00530200
.........................................................................TCCGGGATATCGTA----------------------------CTGTATT---------T..............................................................................................................................................2215.00550000
......................................................................GTTTCCGGGATATCGTA----------------------------CTGTA..........................................................................................................................................................2214.00430100
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGG...........................................................................................................................................................2214.00440000
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTAC.........................................................................................................................................................2413.00330000
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTGCTT..........................................................................................2413.00300201
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTAAA---------...............................................................................................................................................2512.00210100
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTT..........................................................................................................................................................2312.00200200
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTG.............................................................................................2112.00210100
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTATA---------A..............................................................................................................................................2412.00220000
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTGCTA..........................................................................................2412.00200101
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTGCC...........................................................................................2312.00210100
........................................................................TTCCGGGATATCGTA----------------------------CTGTAT.........................................................................................................................................................2112.00220000
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTAA.........................................................................................................................................................2211.00110000
...................................................................CAAGTTTCCGGGATATCGTA----------------------------CT.............................................................................................................................................................2211.00110000
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTAG.........................................................................................................................................................2411.00110000
.....................................................................AGTTTCCGGGATATCGTA----------------------------...............................................................................................................................................................1811.00100100
......................................................................................................................................................AATACGA---------AACCTCAGAAATTTGT............................................................................................2311.00100001
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTCA.........................................................................................................................................................2411.00110000
......................................................................GTTTCCGGGATATCGTA----------------------------CTGTAAA---------...............................................................................................................................................2411.00110000
........................................................................TTCCGGGATATCGTA----------------------------CTGTATT---------A..............................................................................................................................................2311.00110000
....................................................................AAGTTTCCGGGATATCGTA----------------------------CTA............................................................................................................................................................2211.00100100
......................................................................GTTTCCGGGATATCGTA----------------------------CTGTAA.........................................................................................................................................................2311.00110000
....................................................................AAGTTTCCGGGATATCGTA----------------------------CTG............................................................................................................................................................2211.00100100
....................................................................AAGTTTCCGGGATATCGTA----------------------------CT.............................................................................................................................................................2111.00100001
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTCC.........................................................................................................................................................2411.00110000
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTATT---------AA.............................................................................................................................................2511.00110000
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTAG.........................................................................................................................................................2211.00110000
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGA...........................................................................................................................................................2211.00100100
droVir3
T----------------------------------------------------GTGTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
No Reads
droMoj3
C----------------------------------------------------AAAAAAAATGAGAAAATACCT-------------------------------------------------------------------------------------------------------------ATACATA------------------------------------------------------------------CATATGCATGTGTGTGTGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
No Reads
droGri2
T-----------------------------------------------------GGTATTGCTGCTGCAAATTTCCGCGGTGTCGTA----------------------------TTGTATTATCAAAATGGTAT---ACTCTGAACCACAATACGA---------TTCCTCAGAAATTCGCTGCTGTAAGTTACCGTT-TTCAACCGTATAGCAACTGTGCCGATAAACCTATC-------CCAGTCTATCGA----TAGACA-ACGATTGTCSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
....................................................................AAATTTCCGCGGTGTCGTA----------------------------TTG............................................................................................................................................................22174.0074173
...................................................................CAAATTTCCGCGGTGTCGTA----------------------------TT.............................................................................................................................................................22154.0054153
...................................................................CAAATTTCCGCGGTGTCGTA----------------------------T..............................................................................................................................................................21120.0020020
....................................................................AAATTTCCGCGGTGTCGTA----------------------------TT.............................................................................................................................................................21116.0016115
....................................................................AAATTTCCGCGGTGTCGTA----------------------------T..............................................................................................................................................................2014.00404
.......................................................................................................................................................ATACGA---------TTCCTCAGAAATTCGCT...........................................................................................2313.00303
....................................................................AAATTTCCGCGGTGTCGTA----------------------------TTT............................................................................................................................................................2212.00202
...................................................................CAAATTTCCGCGGTGTCGTA----------------------------TTG............................................................................................................................................................2312.00202
...................................................................CAAATTTCCGCGGTGTCGTA----------------------------TTT............................................................................................................................................................2312.00202
.......................................................................................................................................................ATACGA---------TTCCTCAGAAATTCG.............................................................................................2112.00202
........................................................................................................................................................TACGA---------TTCCTCAGAAATTCGCT...........................................................................................2211.00101
...................................................................CAAATTTCCGCGGTGTCGTA----------------------------...............................................................................................................................................................2011.00101
.......................................................................................................................................................ATACGA---------TTCCTCAGAAATTCGCTT..........................................................................................2411.00101
dp5
T----------------------------------------------------CCATGTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
No Reads
droAna3
T-----------------------------------------------------GGTATTATGGCAGCGAGTTTCCGGGATCTCGTA----------------------------CTGTATG---------AAGT---TTTCTATA-TACAATTCGA---------AAACTCAGAAACTTCCTGCCGTGAGCTACCATTGATCAACGGCTGAGTATGCGACC-GGAAAGGGGACG-------CGAATGCGAGGACTAAAGGATGCGCGGATGCGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.......................................................................................................................................................ATTCGA---------AAACTCAGAAACTTCCT...........................................................................................23146.00463105829
......................................................................................................................................................AATTCGA---------AAACTCAGAAACTTC.............................................................................................22120.0020410447
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTG............................................................................................................................................................21117.00173000131
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTGT...........................................................................................................................................................22114.0014500180
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTGTA..........................................................................................................................................................23111.0011400241
.....................................................................................................................................................CAATTCGA---------AAACTCAGAAACTTC.............................................................................................23110.0010010423
........................................................................................................................................................TTCGA---------AAACTCAGAAACTTCCT...........................................................................................2216.006000114
.....................................................................................................................................................CAATTCGA---------AAACTCAGAAACTT..............................................................................................2214.004000022
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CT.............................................................................................................................................................2013.003000012
......................................................................................................................................................AATTCGA---------AAACTCAGAAACTTCC............................................................................................2313.003100011
.......................................................................................................................................................ATTCGA---------AAACTCAGAAACTTCCTT..........................................................................................2412.002100001
.......................................................................................................................................................ATTCGA---------AAACTCAGAAACTTC.............................................................................................2111.001000010
...................................................................CGAGTTTCCGGGATCTCGTA----------------------------CTGTATG---------A..............................................................................................................................................2811.001100000
.......................................................................TTTCCGGGATCTCGTA----------------------------CTGTAT.........................................................................................................................................................2211.001000010
.......................................................................................................................................................ATTCGA---------AAACTCAGAAACTTCCC...........................................................................................2311.001000001
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTT............................................................................................................................................................2111.001000010
......................................................................................................................................................AATTCGA---------AAACTCAGAAACTTT.............................................................................................2211.001100000
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTGTAAA---------...............................................................................................................................................2511.001000100
......................................................................................................................................................AATTCGA---------AAACTCAGAAACTTCA............................................................................................2311.001100000
.......................................................................................................................................................ATTCGA---------AAACTCAGAAACTTCC............................................................................................2211.001000001
....................................................................GAGTTTCCGGGATCTCGTA----------------------------CT.............................................................................................................................................................2111.001000010
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTA............................................................................................................................................................2111.001000010
......................................................................GTTTCCGGGATCTCGTA----------------------------CTG............................................................................................................................................................2011.001000100
....................................................................GAGTTTCCGGGATCTCGTA----------------------------CTG............................................................................................................................................................2211.001000010
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTGTAA.........................................................................................................................................................2411.001000010
.......................................................................TTTCCGGGATCTCGTA----------------------------CTGTATG---------...............................................................................................................................................2311.001100000
...........................................................................CGGGATCTCGTA----------------------------CTGTATG---------AAG............................................................................................................................................2211.001000010
...............................................................................................................................................ATA-TACAATTCGA---------AAACTCAGA...................................................................................................2211.001000010
......................................................................GTTTCCGGGATCTCGTA----------------------------CTGTT..........................................................................................................................................................2211.001100000
...................................................................CGAGTTTCCGGGATCTCGTA----------------------------C..............................................................................................................................................................2111.001000010
....................................................................GAGTTTCCGGGATCTCGTA----------------------------CTGA...........................................................................................................................................................2311.001000010
droBip1
G-------------------------------------------GGGAGTGCCTGGTATTATGGCAGCGAGTTTCCGGGATCTCGTA----------------------------GTGTATG---------AAGT---TTTATAAA-TACAATTCGA---------AAACTCAGAAACTTTCTGCCTTGAAGTACATTC-ATCAACGGCCGAGTA------------------------------------------------------ATATASizeHit CountTotal NormTotal
No Reads
droKik1
T-----------------------------------------------------GGTATAGCCGCAGAAAGTTTCCGAG-TTTCGTA----------------------------ATGTATG---------GTTA--TATTTGAAA-TACAGTACGA---------GACATCAGAAATTTTCGGCAGTTAGCTACCGTA-AACAACCAAAAATGGA-GCAAGGAG------------CA----------------------------------ASizeHit CountTotal NormTotal
No Reads
droFic1
T----------------------------------------------------CGGTATTATCGCAGCAAGTTTCCGGGACTTCGTA----------------------------CTGTATG---------AAGA---ATTCTATA-TACAATACGA---------AACCTCAGAAATTTATTGCAATGAACCACCTTT-AACTATTGAT----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
T----------------------------------------------------TGGTATTATCGCAGCAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------ACAA---ATTCTATA-TACAATACGA---------AACCTTAGAAATTTTCTGAAGTTAGCTACCATA-CACTACCAATAA--------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
T----------------------------------------------------TGGTATTATCGCAGCAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------ACAA---ATTCTATA-TACAATACGA---------AACCTTAGAAATTTTCTGCAGTTATCTACCATT-AACTAC--------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
T----------------------------------------------------TGGTATTATCGCAACAAGTTTCCGGGATTTTGTA----------------------------TTGTATG---------ACTA--GATTCTATA-TACAATACGA---------AACCTCAGAAATTTTCTGCAGTTAACTACCATA-AA------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
T----------------------------------------------------TGGTATTATCGCAACAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------CTGA---ATTCTATA-TACAATACGA---------AAGCTCAGAAATTTTCTGCAGTTAACTACCATT-AACTACTTACTACGAA-GGATGGAT------------T-----------------------------------ASizeHit CountTotal NormTotal
No Reads
droEug1
T----------------------------------------------------TGGTATTATCGCAATAAGTTCCTGGGATTTCGCA----------------------------CTGTATT---------ACGA---TTTTTACA-TACAATACGA---------AAGCTCAGAAACTAACTGCAATTAACTACCGTA-AACTACGGATGAGA-----------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
dm3
T----------------------------------------------------TGGTATTATGGCAAAAAGTTTCCAGGACATTGACAACCTATATATGTATGTACTTGTCGGCACTGGAGT---------AC---------TAAA-TATATTGCACATGTTCATGCATGTTCAACATATTTAGCACTCAAGTACCGAA-AA--------------------------ATGAACAACTAAAA--------GCGG----AGAATACGAAAGTG-CSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTT................................................................................................................2228267.001653400000000100200000000000104000000000000001010101000120000000000000000000000000000000000100200100110022000101020013016000001000000000001000000000000100000009200000000000000240200010153010790000042735664000026402720000001000000000031800112512006253310000000000110029001505616000100032143432171203700010303211312101932504001001701360000041324830012013020601100667543780
........................................................................................................................................................................TGTTCAACATATTTAGCACTCA....................................................................................2221704.503409000002000011100000000000900000000000000000010010000000000000000000000000000000000007001002416009401830018010001515087821380000000000000000000000000000010000000000000000000001000005310001000000087312700009301900000000000000000110011024105000300000000000002100601400000000040769000010000000000500000003180111000400000000013470000002000500100113690210
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGT.................................................................................................................212655.001310000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000100100100000000000000000000000000000000000000000000000000000000000000000000000000111000000000000302500001101000000000000000000010000000001011000000000000001000011000000000203110010000000000003010000000000000000031000001034600000090002000000561030
........................................................................................................................................................................TGTTCAACATATTTAGCACTC.....................................................................................212401.0080200000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000030010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026034000027090000000000000000000001101100000000000000000000300210320000000000298000000000000000210000011000000000300000000005200000000000010001319040
......................................................................................................................................................................CATGTTCAACATATTTAGCACT......................................................................................222213.50427000000000000000000000001000000000000000000000000000000000000000000000000000000000000100000010010010000000010000300000000000000000000000000000000000000000000000000000010000002110000000000111090000907000000000000000000000010110010000000000000000020020000000000001077001000000000000000001002020000000301100000102170000003000100000044040
........................................................................................................................................................................TGTTCAACATATTTAGCACT......................................................................................202114.502290000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000302000000000000000000000000000001000000000000000000000010000000000096000000000000000000000000000000000000000000001100000000000000000111000
.......................................................................................................................AGT---------AC---------TAAA-TATATTGCACATG..................................................................................................................22297.0019400000000000000000000000200000000000000000000000000000000000000000000000000000000010000010000170080010000000000300000000000000000000000000000000000000000000000000000000000003123010060000004010000090800000000000000000010000001001000000000000000002001000000000000003500001000000000000000000001000000000000000000370000000000000000033010
.......................................................................................................TACTTGTCGGCACTGGAGT---------...............................................................................................................................................19180.00800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000001000000000000000000010000000065000000001000000006000
.......................................................................................................TACTTGTCGGCACTGGAG.........................................................................................................................................................18165.0065000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000002400000000000000000000000200000000000010000000100000000000000000025000
.......................................................................................................................................................................ATGTTCAACATATTTAGCACTC.....................................................................................22264.5012900000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000010010010000000000300000000000000000000000000000000000000000000000000000000000000000000000000010021000010040000000000000000001000001100000000000000000000200100000000000000600000000000000000000000101000000010000000000421000000000000000116020
...........................................................................................................................................................................TCAACATATTTAGCACTCAAGT.................................................................................22259.00118000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104000030000000000000000000000000000000000000000000000000000000000000000001400100000000000000000000000000000000000000000810000000000000000012010
......................................................................................................GTACTTGTCGGCACTGGAG.........................................................................................................................................................19137.00370000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000034000000000000000002000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTC...............................................................................................................23232.0064000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000503000050200000000000000000000000000000000000000000000000002000000000000001400000000000000000000000000000000000100000000120000001000000000014000
...................................................................................................................................AC---------TAAA-TATATTGCACATGTT................................................................................................................21229.5059000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002400000000000000000000000000000000000000000000160000000000000000016010
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTCAT.............................................................................................................25225.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000200001010000000000000000000000000000000000000000000000000000000000000000140000000000000000000000000000000000000000000070000000000000000021000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTT...............................................................................................................23222.504500000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000100000000000180000000000000000000000000000000000000000000050000000000000000017000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCC....................................................................................22220.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000001020000000000000000001000000000000000000000000000000000000000000000130000000000000000000000000000000000000000000020000000000000000018000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATG..................................................................................................................20219.503900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000010000000000170000000000000000000000000000000000000000000010000000000000000018000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTC................................................................................................................22219.003800000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100001000000000000000000000000000000000000000000000000100000000000000010140000000000000001000000000100000000000000000010000000000000000014000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCT....................................................................................22218.00360000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000000000000001000000000000000000000000000000000000018000000000000000000000000000000000000000000002000000000000000009000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTCA..............................................................................................................24217.003400000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010000000000000000030000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000001000000000000000000000000000000000000000000020110000000000000001000000000000000000000000000020000000000000000010000
....................................................................................................ATGTACTTGTCGGCACTGGAG.........................................................................................................................................................21116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000014000000000000000000000
..........................................................................................................................................................................TTCAACATATTTAGCACTCAAGT.................................................................................23215.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000100000000000000000000000000100000000000000000000000000000000000000040000000000000000000000000000000000000000000019000000100000000002000
.....................................................................................................TGTACTTGTCGGCACTGGAG.........................................................................................................................................................20112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000010000002000
..........................................................................................................................................................................TTCAACATATTTAGCACTCAAG..................................................................................22210.5021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000104000000000000000000000000000000000000000000008000000000000000007000
.......................................................................................................................................................................ATGTTCAACATATTTAGCACT......................................................................................2129.5019000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000003000000100000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000004000000000000000006010
...........................................................................................................................................................................TCAACATATTTAGCACTCAAG..................................................................................2129.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000009000000000000000006000
...................................................................................................TATGTACTTGTCGGCACTGGAG.........................................................................................................................................................2219.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000000000000000000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTA...............................................................................................................2327.5015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000000100000000000000000000000000000006000000000000000000000000000000000000000000001000000000000000005000
....................................................................................................ATGTACTTGTCGGCACTGG...........................................................................................................................................................1917.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000001000
.......................................................................................................................AGT---------AC---------TAAA-TATATTGCACAT...................................................................................................................2126.5013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000004000000100000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000002000000000000000002000
..................................................................................................................ACTGGAGT---------AC---------TAAA-TATATTGCA......................................................................................................................2326.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000
..............................................................................................................................................TAAA-TATATTGCACATGTT................................................................................................................1926.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000010000000000000000000000000010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000007000
.......................................................................................................................AGT---------AC---------TAAA-TATATTGCACA....................................................................................................................2025.5011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000000000000000000000001000000000000000005000000000000000000000000000000000000000000000000000000000000003000
....................................................................................................................................C---------TAAA-TATATTGCACATGTT................................................................................................................2025.5011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000003000000000000000002000
.......................................................................................................................AGT---------AC---------TAAA-TATATTGCACATGT.................................................................................................................2325.5011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000010000006000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTCATG............................................................................................................2625.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000001010000000000000000000000000000000000001000000000000000000000000000000000000000000002000000000000000004000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACAT...................................................................................................................1925.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000100000000000000000000000000000000000000010000002000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCAT...................................................................................2324.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000004000
........................................................................................................................GT---------AC---------TAAA-TATATTGCACATG..................................................................................................................2123.507000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000021000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000
...................................................................................................................................AC---------TAAA-TATATTGCACATGT.................................................................................................................2023.507000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000001000000000000000005000
....................................................................................................................TGGAGT---------AC---------TAAA-TATATTGCA......................................................................................................................2123.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000004000000000000000000000
....................................................................................................................TGGAGT---------AC---------TAAA-TATATTGCAC.....................................................................................................................2223.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000001000000002000000000000000001000
........................................................................................................................................................................TGTTCAACATATTTAGCAC.......................................................................................1922.505000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000100000002000
......................................................................................................................................................................CATGTTCAACATATTTAGCAC.......................................................................................2122.505000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000002000000000000000001000
...................................................................................................................................AC---------TAAA-TATATTGCACATGTTCATG............................................................................................................2522.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000002000000000000000000000
.....................................................................................................TGTACTTGTCGGCACTGG...........................................................................................................................................................1812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
...................................................................................................................................AC---------TAAA-TATATTGCACATGTTCAT.............................................................................................................2422.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTCATGT...........................................................................................................2722.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000001000
...................................................................................................................................AC---------TAAA-TATATTGCACATGTTC...............................................................................................................2222.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000010000000000000000000000000001000000000000000000000
...................................................................................................................................AC---------TAAA-TATATTGCACATGTTCA..............................................................................................................2322.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................TTCAACATATTTAGCACTCA....................................................................................2022.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000003000
........................................................................................................................GT---------AC---------TAAA-TATATTGCACATGT.................................................................................................................2222.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000
...............................................................................................................................................AAA-TATATTGCACATGTT................................................................................................................1822.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................GTACTTGTCGGCACTGGAGT---------...............................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000
.........................................................................................................................................................................GTTCAACATATTTAGCACTCA....................................................................................2122.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000
..................................................................................................................ACTGGAGT---------AC---------TAAA-TATATTG........................................................................................................................2121.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACA....................................................................................................................1821.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TGTTCAACATATTTAGCACTTT....................................................................................2221.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCG....................................................................................2221.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTATC.............................................................................................................2521.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................CATGTTCAACATATTTAGCACTT.....................................................................................2321.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000001000000000000000000000
........................................................................................................................GT---------AC---------TAAA-TATATTGCACATGTTCATG............................................................................................................2721.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGC.................................................................................................................2121.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000001000
....................................................................................................................TGGAGT---------AC---------TAAA-TATATTGC.......................................................................................................................2021.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000002000000000000000000000
........................................................................................................................GT---------AC---------TAAA-TATATTGCACATGTT................................................................................................................2321.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................AACATATTTAGCACTCAAGT.................................................................................2021.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000
....................................................................................................ATGTACTTGTCGGCACTGGA..........................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.......................................................................................................................................................................ATGTTCAACATATTTAGCACTCC....................................................................................2321.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TACTTGTCGGCACTGGAA.........................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................GTATGTACTTGTCGGCACTGGAG.........................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCAATC.................................................................................2521.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGG.................................................................................................................2121.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................TACTTGTCGGCACTGGAGT---------AT---------C...................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCTT...................................................................................2321.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TGTTCAACATATTTAGCACTT.....................................................................................2121.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................TCAACATATTTAGCACTCAA...................................................................................2021.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000
...........................................................................................................................................................................................................................................ACTAAAA--------GCGG----AGAATACGAA......2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................TTCAACATATTTAGCACTCAAA..................................................................................2221.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................ACTTGTCGGCACTGGAGT---------...............................................................................................................................................1821.002000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................................................................................................................................................................TGTTCAACATATTTAGCA........................................................................................1821.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000
........................................................................TTCCAGGACATTGACAAC........................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTG...............................................................................................................2321.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
droSim2
T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCAGGACATCGAG----------------------------CTGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
No Reads
droSec2
T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCAGGACATCGAG----------------------------CTGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
No Reads
droYak3
T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCGGGACTTCGTA----------------------------CTGTATG---------ACAG---ACTATATA-TACAATACGA---------AGCCTCTGAAATTTTCTGCGCTCAAGTACCAAA-AACTAC--------------------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
......................................................................................................................................................AATACGA---------AGCCTCTGAAATTTT.............................................................................................221129.0012911211000150000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTGT...........................................................................................................................................................22184.00846031110180000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTTCT...........................................................................................23130.0030300000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTG............................................................................................................................................................21128.0028710000200000
......................................................................................................................................................AATACGA---------AGCCTCTGAAATTT..............................................................................................21123.0023211000010000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTGG...........................................................................................................................................................22118.0018180000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTGC...........................................................................................................................................................22111.0011110000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CT.............................................................................................................................................................2018.00800001160000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------C..............................................................................................................................................................1916.00660000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTGTT..........................................................................................................................................................2315.00550000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTGTA..........................................................................................................................................................2315.00550000000000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTTCTG..........................................................................................2415.00550000000000
......................................................................................................................................................AATACGA---------AGCCTCTGAAATT...............................................................................................2013.00330000000000
........................................................................................................................................................TACGA---------AGCCTCTGAAATTTTCT...........................................................................................2213.00330000000000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTTC............................................................................................2212.00210000010000
........................................................................................................................................................TACGA---------AGCCTCTGAAATTTTCTG..........................................................................................2312.00220000000000
..........................................................................CCGGGACTTCGTA----------------------------CTGTA..........................................................................................................................................................1811.00110000000000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTTCC...........................................................................................2311.00110000000000
.........................................................................TCCGGGACTTCGTA----------------------------CTGTATG---------A..............................................................................................................................................2211.00101000000000
......................................................................GTTTCCGGGACTTCGTA----------------------------CTGTT..........................................................................................................................................................2211.00110000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTT............................................................................................................................................................2111.00110000000000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTTCTGC.........................................................................................2511.00110000000000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTT.............................................................................................2111.00110000000000
........................................................................................................................................................TACGA---------AGCCTCTGAAATTTTC............................................................................................2111.00110000000000
.....................................................................................................................................................CAATACGA---------AGCCTCTGAAATTTT.............................................................................................2311.00100000100000
droEre2
T----------------------------------------------------TGGTATTAAGGCAACAAGTTTCAGGGACTTCGCA----------------------------CTGTAT---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
No Reads

Generated: 10/20/2015 at 07:44 PM

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004909:7956376-7956580 + dwi_140 confident TTAGCTTAAATGCACAATTTATGCACTATGGAAATAATTAATTGGATATTGGTTGGTATTATCGCAGCAAGTTTCCGGGATATCGTA----------------------------CTGTATT---------TCTAAACATTTCATA-TACAATACGA---------AACCTCAGAAATTTGCTGCGGTTAGTTACCGTT-AACAACTCATAAGAAA-GGAGAGAA------------TAAAA--------ATGATCAATATACATGTGTGTGTG
droVir3 scaffold_13042:907857-907872 - T----------------------------------------------------GTGTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTG
droMoj3 scaffold_6496:4195040-4195086 - C----------------------------------------------------AAAAAAAATGAGAAAATACCT-------------------------------------------------------------------------------------------------------------ATACATA------------------------------------------------------------------CATATGCATGTGTGTGTG
droGri2 scaffold_15081:2044829-2044996 - dgr_10 confident T-----------------------------------------------------GGTATTGCTGCTGCAAATTTCCGCGGTGTCGTA----------------------------TTGTATTATCAAAATGGTAT---ACTCTGAACCACAATACGA---------TTCCTCAGAAATTCGCTGCTGTAAGTTACCGTT-TTCAACCGTATAGCAACTGTGCCGATAAACCTATC-------CCAGTCTATCGA----TAGACA-ACGATTGTC
dp5 3:5184418-5184437 + T----------------------------------------------------CCATGTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTG
droAna3 scaffold_13417:2468029-2468191 - T-----------------------------------------------------GGTATTATGGCAGCGAGTTTCCGGGATCTCGTA----------------------------CTGTATG---------AAGT---TTTCTATA-TACAATTCGA---------AAACTCAGAAACTTCCTGCCGTGAGCTACCATTGATCAACGGCTGAGTATGCGACC-GGAAAGGGGACG-------CGAATGCGAGGACTAAAGGATGCGCGGATGCG
droBip1 scf7180000395874:40395-40520 - G-------------------------------------------GGGAGTGCCTGGTATTATGGCAGCGAGTTTCCGGGATCTCGTA----------------------------GTGTATG---------AAGT---TTTATAAA-TACAATTCGA---------AAACTCAGAAACTTTCTGCCTTGAAGTACATTC-ATCAACGGCCGAGTA------------------------------------------------------ATATA
droKik1 scf7180000302517:1183445-1183567 + T-----------------------------------------------------GGTATAGCCGCAGAAAGTTTCCGAG-TTTCGTA----------------------------ATGTATG---------GTTA--TATTTGAAA-TACAGTACGA---------GACATCAGAAATTTTCGGCAGTTAGCTACCGTA-AACAACCAAAAATGGA-GCAAGGAG------------CA----------------------------------A
droFic1 scf7180000454073:1733616-1733722 + T----------------------------------------------------CGGTATTATCGCAGCAAGTTTCCGGGACTTCGTA----------------------------CTGTATG---------AAGA---ATTCTATA-TACAATACGA---------AACCTCAGAAATTTATTGCAATGAACCACCTTT-AACTATTGAT----------------------------------------------------------------
droEle1 scf7180000490751:1118514-1118622 + T----------------------------------------------------TGGTATTATCGCAGCAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------ACAA---ATTCTATA-TACAATACGA---------AACCTTAGAAATTTTCTGAAGTTAGCTACCATA-CACTACCAATAA--------------------------------------------------------------
droRho1 scf7180000761121:190394-190496 - T----------------------------------------------------TGGTATTATCGCAGCAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------ACAA---ATTCTATA-TACAATACGA---------AACCTTAGAAATTTTCTGCAGTTATCTACCATT-AACTAC--------------------------------------------------------------------
droBia1 scf7180000302069:1151364-1151463 - T----------------------------------------------------TGGTATTATCGCAACAAGTTTCCGGGATTTTGTA----------------------------TTGTATG---------ACTA--GATTCTATA-TACAATACGA---------AACCTCAGAAATTTTCTGCAGTTAACTACCATA-AA------------------------------------------------------------------------
droTak1 scf7180000415169:845124-845246 - T----------------------------------------------------TGGTATTATCGCAACAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------CTGA---ATTCTATA-TACAATACGA---------AAGCTCAGAAATTTTCTGCAGTTAACTACCATT-AACTACTTACTACGAA-GGATGGAT------------T-----------------------------------A
droEug1 scf7180000409230:879979-880090 - T----------------------------------------------------TGGTATTATCGCAATAAGTTCCTGGGATTTCGCA----------------------------CTGTATT---------ACGA---TTTTTACA-TACAATACGA---------AAGCTCAGAAACTAACTGCAATTAACTACCGTA-AACTACGGATGAGA-----------------------------------------------------------A
dm3 chrX:19452595-19452757 + dme-mir-4966-2 Known_mirbase T----------------------------------------------------TGGTATTATGGCAAAAAGTTTCCAGGACATTGACAACCTATATATGTATGTACTTGTCGGCACTGGAGT---------AC---------TAAA-TATATTGCACATGTTCATGCATGTTCAACATATTTAGCACTCAAGTACCGAA-AA--------------------------ATGAACAACTAAAA--------GCGG----AGAATACGAAAGTG-C
droSim2 x:18341756-18341796 + T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCAGGACATCGAG----------------------------CTGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_8:1734626-1734666 + T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCAGGACATCGAG----------------------------CTGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:11886139-11886241 - dya_51 novel T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCGGGACTTCGTA----------------------------CTGTATG---------ACAG---ACTATATA-TACAATACGA---------AGCCTCTGAAATTTTCTGCGCTCAAGTACCAAA-AACTAC--------------------------------------------------------------------
droEre2 scaffold_4690:9688639-9688679 + T----------------------------------------------------TGGTATTAAGGCAACAAGTTTCAGGGACTTCGCA----------------------------CTGTAT---------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TTAGCTTAAATGCACAATTTATGCACTATGGAAATAATTAATTGGATATTGGTTGGTATTATCGCAGCAAGTTTCCGGGATATCGTA----------------------------CTGTATT---------TCTAAACATTTCATA-TACAATACGA---------AACCTCAGAAATTTGCTGCGGTTAGTTACCGTT-AACAACTCATAAGAAA-GGAGAGAA------------TAAAA--------ATGATCAATATACATGTGTGTGTGSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTA..........................................................................................................................................................231290.0029023605310
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTGCT...........................................................................................231173.00173101811566
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTAT.........................................................................................................................................................221161.0016112323402
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGT...........................................................................................................................................................221139.001394908901
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTAA.........................................................................................................................................................241124.0012410302100
.....................................................................AGTTTCCGGGATATCGTA----------------------------C..............................................................................................................................................................19138.0038380000
........................................................................TTCCGGGATATCGTA----------------------------CTGTATT---------T..............................................................................................................................................23133.0033300300
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTG............................................................................................................................................................21121.0021002001
........................................................................TTCCGGGATATCGTA----------------------------CTGTATT---------...............................................................................................................................................22116.0016130300
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTGC............................................................................................22113.001331324
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTATT---------...............................................................................................................................................2317.00750200
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTC..........................................................................................................................................................2317.00760100
........................................................................................................................................................TACGA---------AACCTCAGAAATTTGCT...........................................................................................2216.00600402
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGC...........................................................................................................................................................2216.00660000
.....................................................................AGTTTCCGGGATATCGTA----------------------------CT.............................................................................................................................................................2016.00610500
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTAC.........................................................................................................................................................2216.00660000
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTAT.........................................................................................................................................................2416.00650001
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTA..........................................................................................................................................................2115.00540100
......................................................................................................................................................AATACGA---------AACCTCAGAAATTTG.............................................................................................2215.00530200
.........................................................................TCCGGGATATCGTA----------------------------CTGTATT---------T..............................................................................................................................................2215.00550000
......................................................................GTTTCCGGGATATCGTA----------------------------CTGTA..........................................................................................................................................................2214.00430100
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGG...........................................................................................................................................................2214.00440000
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTAC.........................................................................................................................................................2413.00330000
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTGCTT..........................................................................................2413.00300201
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTAAA---------...............................................................................................................................................2512.00210100
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTT..........................................................................................................................................................2312.00200200
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTG.............................................................................................2112.00210100
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTATA---------A..............................................................................................................................................2412.00220000
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTGCTA..........................................................................................2412.00200101
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTGCC...........................................................................................2312.00210100
........................................................................TTCCGGGATATCGTA----------------------------CTGTAT.........................................................................................................................................................2112.00220000
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTAA.........................................................................................................................................................2211.00110000
...................................................................CAAGTTTCCGGGATATCGTA----------------------------CT.............................................................................................................................................................2211.00110000
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTAG.........................................................................................................................................................2411.00110000
.....................................................................AGTTTCCGGGATATCGTA----------------------------...............................................................................................................................................................1811.00100100
......................................................................................................................................................AATACGA---------AACCTCAGAAATTTGT............................................................................................2311.00100001
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTCA.........................................................................................................................................................2411.00110000
......................................................................GTTTCCGGGATATCGTA----------------------------CTGTAAA---------...............................................................................................................................................2411.00110000
........................................................................TTCCGGGATATCGTA----------------------------CTGTATT---------A..............................................................................................................................................2311.00110000
....................................................................AAGTTTCCGGGATATCGTA----------------------------CTA............................................................................................................................................................2211.00100100
......................................................................GTTTCCGGGATATCGTA----------------------------CTGTAA.........................................................................................................................................................2311.00110000
....................................................................AAGTTTCCGGGATATCGTA----------------------------CTG............................................................................................................................................................2211.00100100
....................................................................AAGTTTCCGGGATATCGTA----------------------------CT.............................................................................................................................................................2111.00100001
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTCC.........................................................................................................................................................2411.00110000
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTATT---------AA.............................................................................................................................................2511.00110000
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTAG.........................................................................................................................................................2211.00110000
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGA...........................................................................................................................................................2211.00100100
droVir3
T----------------------------------------------------GTGTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
No Reads
droMoj3
C----------------------------------------------------AAAAAAAATGAGAAAATACCT-------------------------------------------------------------------------------------------------------------ATACATA------------------------------------------------------------------CATATGCATGTGTGTGTGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
No Reads
droGri2
T-----------------------------------------------------GGTATTGCTGCTGCAAATTTCCGCGGTGTCGTA----------------------------TTGTATTATCAAAATGGTAT---ACTCTGAACCACAATACGA---------TTCCTCAGAAATTCGCTGCTGTAAGTTACCGTT-TTCAACCGTATAGCAACTGTGCCGATAAACCTATC-------CCAGTCTATCGA----TAGACA-ACGATTGTCSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
....................................................................AAATTTCCGCGGTGTCGTA----------------------------TTG............................................................................................................................................................22174.0074173
...................................................................CAAATTTCCGCGGTGTCGTA----------------------------TT.............................................................................................................................................................22154.0054153
...................................................................CAAATTTCCGCGGTGTCGTA----------------------------T..............................................................................................................................................................21120.0020020
....................................................................AAATTTCCGCGGTGTCGTA----------------------------TT.............................................................................................................................................................21116.0016115
....................................................................AAATTTCCGCGGTGTCGTA----------------------------T..............................................................................................................................................................2014.00404
.......................................................................................................................................................ATACGA---------TTCCTCAGAAATTCGCT...........................................................................................2313.00303
....................................................................AAATTTCCGCGGTGTCGTA----------------------------TTT............................................................................................................................................................2212.00202
...................................................................CAAATTTCCGCGGTGTCGTA----------------------------TTG............................................................................................................................................................2312.00202
...................................................................CAAATTTCCGCGGTGTCGTA----------------------------TTT............................................................................................................................................................2312.00202
.......................................................................................................................................................ATACGA---------TTCCTCAGAAATTCG.............................................................................................2112.00202
........................................................................................................................................................TACGA---------TTCCTCAGAAATTCGCT...........................................................................................2211.00101
...................................................................CAAATTTCCGCGGTGTCGTA----------------------------...............................................................................................................................................................2011.00101
.......................................................................................................................................................ATACGA---------TTCCTCAGAAATTCGCTT..........................................................................................2411.00101
dp5
T----------------------------------------------------CCATGTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
No Reads
droAna3
T-----------------------------------------------------GGTATTATGGCAGCGAGTTTCCGGGATCTCGTA----------------------------CTGTATG---------AAGT---TTTCTATA-TACAATTCGA---------AAACTCAGAAACTTCCTGCCGTGAGCTACCATTGATCAACGGCTGAGTATGCGACC-GGAAAGGGGACG-------CGAATGCGAGGACTAAAGGATGCGCGGATGCGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.......................................................................................................................................................ATTCGA---------AAACTCAGAAACTTCCT...........................................................................................23146.00463105829
......................................................................................................................................................AATTCGA---------AAACTCAGAAACTTC.............................................................................................22120.0020410447
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTG............................................................................................................................................................21117.00173000131
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTGT...........................................................................................................................................................22114.0014500180
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTGTA..........................................................................................................................................................23111.0011400241
.....................................................................................................................................................CAATTCGA---------AAACTCAGAAACTTC.............................................................................................23110.0010010423
........................................................................................................................................................TTCGA---------AAACTCAGAAACTTCCT...........................................................................................2216.006000114
.....................................................................................................................................................CAATTCGA---------AAACTCAGAAACTT..............................................................................................2214.004000022
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CT.............................................................................................................................................................2013.003000012
......................................................................................................................................................AATTCGA---------AAACTCAGAAACTTCC............................................................................................2313.003100011
.......................................................................................................................................................ATTCGA---------AAACTCAGAAACTTCCTT..........................................................................................2412.002100001
.......................................................................................................................................................ATTCGA---------AAACTCAGAAACTTC.............................................................................................2111.001000010
...................................................................CGAGTTTCCGGGATCTCGTA----------------------------CTGTATG---------A..............................................................................................................................................2811.001100000
.......................................................................TTTCCGGGATCTCGTA----------------------------CTGTAT.........................................................................................................................................................2211.001000010
.......................................................................................................................................................ATTCGA---------AAACTCAGAAACTTCCC...........................................................................................2311.001000001
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTT............................................................................................................................................................2111.001000010
......................................................................................................................................................AATTCGA---------AAACTCAGAAACTTT.............................................................................................2211.001100000
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTGTAAA---------...............................................................................................................................................2511.001000100
......................................................................................................................................................AATTCGA---------AAACTCAGAAACTTCA............................................................................................2311.001100000
.......................................................................................................................................................ATTCGA---------AAACTCAGAAACTTCC............................................................................................2211.001000001
....................................................................GAGTTTCCGGGATCTCGTA----------------------------CT.............................................................................................................................................................2111.001000010
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTA............................................................................................................................................................2111.001000010
......................................................................GTTTCCGGGATCTCGTA----------------------------CTG............................................................................................................................................................2011.001000100
....................................................................GAGTTTCCGGGATCTCGTA----------------------------CTG............................................................................................................................................................2211.001000010
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTGTAA.........................................................................................................................................................2411.001000010
.......................................................................TTTCCGGGATCTCGTA----------------------------CTGTATG---------...............................................................................................................................................2311.001100000
...........................................................................CGGGATCTCGTA----------------------------CTGTATG---------AAG............................................................................................................................................2211.001000010
...............................................................................................................................................ATA-TACAATTCGA---------AAACTCAGA...................................................................................................2211.001000010
......................................................................GTTTCCGGGATCTCGTA----------------------------CTGTT..........................................................................................................................................................2211.001100000
...................................................................CGAGTTTCCGGGATCTCGTA----------------------------C..............................................................................................................................................................2111.001000010
....................................................................GAGTTTCCGGGATCTCGTA----------------------------CTGA...........................................................................................................................................................2311.001000010
droBip1
G-------------------------------------------GGGAGTGCCTGGTATTATGGCAGCGAGTTTCCGGGATCTCGTA----------------------------GTGTATG---------AAGT---TTTATAAA-TACAATTCGA---------AAACTCAGAAACTTTCTGCCTTGAAGTACATTC-ATCAACGGCCGAGTA------------------------------------------------------ATATASizeHit CountTotal NormTotal
No Reads
droKik1
T-----------------------------------------------------GGTATAGCCGCAGAAAGTTTCCGAG-TTTCGTA----------------------------ATGTATG---------GTTA--TATTTGAAA-TACAGTACGA---------GACATCAGAAATTTTCGGCAGTTAGCTACCGTA-AACAACCAAAAATGGA-GCAAGGAG------------CA----------------------------------ASizeHit CountTotal NormTotal
No Reads
droFic1
T----------------------------------------------------CGGTATTATCGCAGCAAGTTTCCGGGACTTCGTA----------------------------CTGTATG---------AAGA---ATTCTATA-TACAATACGA---------AACCTCAGAAATTTATTGCAATGAACCACCTTT-AACTATTGAT----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
T----------------------------------------------------TGGTATTATCGCAGCAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------ACAA---ATTCTATA-TACAATACGA---------AACCTTAGAAATTTTCTGAAGTTAGCTACCATA-CACTACCAATAA--------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
T----------------------------------------------------TGGTATTATCGCAGCAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------ACAA---ATTCTATA-TACAATACGA---------AACCTTAGAAATTTTCTGCAGTTATCTACCATT-AACTAC--------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
T----------------------------------------------------TGGTATTATCGCAACAAGTTTCCGGGATTTTGTA----------------------------TTGTATG---------ACTA--GATTCTATA-TACAATACGA---------AACCTCAGAAATTTTCTGCAGTTAACTACCATA-AA------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
T----------------------------------------------------TGGTATTATCGCAACAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------CTGA---ATTCTATA-TACAATACGA---------AAGCTCAGAAATTTTCTGCAGTTAACTACCATT-AACTACTTACTACGAA-GGATGGAT------------T-----------------------------------ASizeHit CountTotal NormTotal
No Reads
droEug1
T----------------------------------------------------TGGTATTATCGCAATAAGTTCCTGGGATTTCGCA----------------------------CTGTATT---------ACGA---TTTTTACA-TACAATACGA---------AAGCTCAGAAACTAACTGCAATTAACTACCGTA-AACTACGGATGAGA-----------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
dm3
T----------------------------------------------------TGGTATTATGGCAAAAAGTTTCCAGGACATTGACAACCTATATATGTATGTACTTGTCGGCACTGGAGT---------AC---------TAAA-TATATTGCACATGTTCATGCATGTTCAACATATTTAGCACTCAAGTACCGAA-AA--------------------------ATGAACAACTAAAA--------GCGG----AGAATACGAAAGTG-CSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTT................................................................................................................2228267.001653400000000100200000000000104000000000000001010101000120000000000000000000000000000000000100200100110022000101020013016000001000000000001000000000000100000009200000000000000240200010153010790000042735664000026402720000001000000000031800112512006253310000000000110029001505616000100032143432171203700010303211312101932504001001701360000041324830012013020601100667543780
........................................................................................................................................................................TGTTCAACATATTTAGCACTCA....................................................................................2221704.503409000002000011100000000000900000000000000000010010000000000000000000000000000000000007001002416009401830018010001515087821380000000000000000000000000000010000000000000000000001000005310001000000087312700009301900000000000000000110011024105000300000000000002100601400000000040769000010000000000500000003180111000400000000013470000002000500100113690210
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGT.................................................................................................................212655.001310000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000100100100000000000000000000000000000000000000000000000000000000000000000000000000111000000000000302500001101000000000000000000010000000001011000000000000001000011000000000203110010000000000003010000000000000000031000001034600000090002000000561030
........................................................................................................................................................................TGTTCAACATATTTAGCACTC.....................................................................................212401.0080200000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000030010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026034000027090000000000000000000001101100000000000000000000300210320000000000298000000000000000210000011000000000300000000005200000000000010001319040
......................................................................................................................................................................CATGTTCAACATATTTAGCACT......................................................................................222213.50427000000000000000000000001000000000000000000000000000000000000000000000000000000000000100000010010010000000010000300000000000000000000000000000000000000000000000000000010000002110000000000111090000907000000000000000000000010110010000000000000000020020000000000001077001000000000000000001002020000000301100000102170000003000100000044040
........................................................................................................................................................................TGTTCAACATATTTAGCACT......................................................................................202114.502290000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000302000000000000000000000000000001000000000000000000000010000000000096000000000000000000000000000000000000000000001100000000000000000111000
.......................................................................................................................AGT---------AC---------TAAA-TATATTGCACATG..................................................................................................................22297.0019400000000000000000000000200000000000000000000000000000000000000000000000000000000010000010000170080010000000000300000000000000000000000000000000000000000000000000000000000003123010060000004010000090800000000000000000010000001001000000000000000002001000000000000003500001000000000000000000001000000000000000000370000000000000000033010
.......................................................................................................TACTTGTCGGCACTGGAGT---------...............................................................................................................................................19180.00800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000001000000000000000000010000000065000000001000000006000
.......................................................................................................TACTTGTCGGCACTGGAG.........................................................................................................................................................18165.0065000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000002400000000000000000000000200000000000010000000100000000000000000025000
.......................................................................................................................................................................ATGTTCAACATATTTAGCACTC.....................................................................................22264.5012900000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000010010010000000000300000000000000000000000000000000000000000000000000000000000000000000000000010021000010040000000000000000001000001100000000000000000000200100000000000000600000000000000000000000101000000010000000000421000000000000000116020
...........................................................................................................................................................................TCAACATATTTAGCACTCAAGT.................................................................................22259.00118000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104000030000000000000000000000000000000000000000000000000000000000000000001400100000000000000000000000000000000000000000810000000000000000012010
......................................................................................................GTACTTGTCGGCACTGGAG.........................................................................................................................................................19137.00370000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000034000000000000000002000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTC...............................................................................................................23232.0064000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000503000050200000000000000000000000000000000000000000000000002000000000000001400000000000000000000000000000000000100000000120000001000000000014000
...................................................................................................................................AC---------TAAA-TATATTGCACATGTT................................................................................................................21229.5059000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002400000000000000000000000000000000000000000000160000000000000000016010
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTCAT.............................................................................................................25225.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000200001010000000000000000000000000000000000000000000000000000000000000000140000000000000000000000000000000000000000000070000000000000000021000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTT...............................................................................................................23222.504500000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000100000000000180000000000000000000000000000000000000000000050000000000000000017000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCC....................................................................................22220.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000001020000000000000000001000000000000000000000000000000000000000000000130000000000000000000000000000000000000000000020000000000000000018000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATG..................................................................................................................20219.503900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000010000000000170000000000000000000000000000000000000000000010000000000000000018000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTC................................................................................................................22219.003800000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100001000000000000000000000000000000000000000000000000100000000000000010140000000000000001000000000100000000000000000010000000000000000014000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCT....................................................................................22218.00360000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000000000000001000000000000000000000000000000000000018000000000000000000000000000000000000000000002000000000000000009000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTCA..............................................................................................................24217.003400000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010000000000000000030000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000001000000000000000000000000000000000000000000020110000000000000001000000000000000000000000000020000000000000000010000
....................................................................................................ATGTACTTGTCGGCACTGGAG.........................................................................................................................................................21116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000014000000000000000000000
..........................................................................................................................................................................TTCAACATATTTAGCACTCAAGT.................................................................................23215.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000100000000000000000000000000100000000000000000000000000000000000000040000000000000000000000000000000000000000000019000000100000000002000
.....................................................................................................TGTACTTGTCGGCACTGGAG.........................................................................................................................................................20112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000010000002000
..........................................................................................................................................................................TTCAACATATTTAGCACTCAAG..................................................................................22210.5021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000104000000000000000000000000000000000000000000008000000000000000007000
.......................................................................................................................................................................ATGTTCAACATATTTAGCACT......................................................................................2129.5019000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000003000000100000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000004000000000000000006010
...........................................................................................................................................................................TCAACATATTTAGCACTCAAG..................................................................................2129.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000009000000000000000006000
...................................................................................................TATGTACTTGTCGGCACTGGAG.........................................................................................................................................................2219.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000000000000000000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTA...............................................................................................................2327.5015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000000100000000000000000000000000000006000000000000000000000000000000000000000000001000000000000000005000
....................................................................................................ATGTACTTGTCGGCACTGG...........................................................................................................................................................1917.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000001000
.......................................................................................................................AGT---------AC---------TAAA-TATATTGCACAT...................................................................................................................2126.5013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000004000000100000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000002000000000000000002000
..................................................................................................................ACTGGAGT---------AC---------TAAA-TATATTGCA......................................................................................................................2326.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000
..............................................................................................................................................TAAA-TATATTGCACATGTT................................................................................................................1926.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000010000000000000000000000000010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000007000
.......................................................................................................................AGT---------AC---------TAAA-TATATTGCACA....................................................................................................................2025.5011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000000000000000000000001000000000000000005000000000000000000000000000000000000000000000000000000000000003000
....................................................................................................................................C---------TAAA-TATATTGCACATGTT................................................................................................................2025.5011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000003000000000000000002000
.......................................................................................................................AGT---------AC---------TAAA-TATATTGCACATGT.................................................................................................................2325.5011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000010000006000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTCATG............................................................................................................2625.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000001010000000000000000000000000000000000001000000000000000000000000000000000000000000002000000000000000004000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACAT...................................................................................................................1925.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000100000000000000000000000000000000000000010000002000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCAT...................................................................................2324.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000004000
........................................................................................................................GT---------AC---------TAAA-TATATTGCACATG..................................................................................................................2123.507000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000021000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000
...................................................................................................................................AC---------TAAA-TATATTGCACATGT.................................................................................................................2023.507000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000001000000000000000005000
....................................................................................................................TGGAGT---------AC---------TAAA-TATATTGCA......................................................................................................................2123.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000004000000000000000000000
....................................................................................................................TGGAGT---------AC---------TAAA-TATATTGCAC.....................................................................................................................2223.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000001000000002000000000000000001000
........................................................................................................................................................................TGTTCAACATATTTAGCAC.......................................................................................1922.505000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000100000002000
......................................................................................................................................................................CATGTTCAACATATTTAGCAC.......................................................................................2122.505000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000002000000000000000001000
...................................................................................................................................AC---------TAAA-TATATTGCACATGTTCATG............................................................................................................2522.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000002000000000000000000000
.....................................................................................................TGTACTTGTCGGCACTGG...........................................................................................................................................................1812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
...................................................................................................................................AC---------TAAA-TATATTGCACATGTTCAT.............................................................................................................2422.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTCATGT...........................................................................................................2722.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000001000
...................................................................................................................................AC---------TAAA-TATATTGCACATGTTC...............................................................................................................2222.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000010000000000000000000000000001000000000000000000000
...................................................................................................................................AC---------TAAA-TATATTGCACATGTTCA..............................................................................................................2322.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................TTCAACATATTTAGCACTCA....................................................................................2022.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000003000
........................................................................................................................GT---------AC---------TAAA-TATATTGCACATGT.................................................................................................................2222.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000
...............................................................................................................................................AAA-TATATTGCACATGTT................................................................................................................1822.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................GTACTTGTCGGCACTGGAGT---------...............................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000
.........................................................................................................................................................................GTTCAACATATTTAGCACTCA....................................................................................2122.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000
..................................................................................................................ACTGGAGT---------AC---------TAAA-TATATTG........................................................................................................................2121.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACA....................................................................................................................1821.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TGTTCAACATATTTAGCACTTT....................................................................................2221.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCG....................................................................................2221.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTATC.............................................................................................................2521.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................CATGTTCAACATATTTAGCACTT.....................................................................................2321.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000001000000000000000000000
........................................................................................................................GT---------AC---------TAAA-TATATTGCACATGTTCATG............................................................................................................2721.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGC.................................................................................................................2121.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000001000
....................................................................................................................TGGAGT---------AC---------TAAA-TATATTGC.......................................................................................................................2021.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000002000000000000000000000
........................................................................................................................GT---------AC---------TAAA-TATATTGCACATGTT................................................................................................................2321.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................AACATATTTAGCACTCAAGT.................................................................................2021.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000
....................................................................................................ATGTACTTGTCGGCACTGGA..........................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.......................................................................................................................................................................ATGTTCAACATATTTAGCACTCC....................................................................................2321.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TACTTGTCGGCACTGGAA.........................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................GTATGTACTTGTCGGCACTGGAG.........................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCAATC.................................................................................2521.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGG.................................................................................................................2121.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................TACTTGTCGGCACTGGAGT---------AT---------C...................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCTT...................................................................................2321.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TGTTCAACATATTTAGCACTT.....................................................................................2121.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................TCAACATATTTAGCACTCAA...................................................................................2021.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000
...........................................................................................................................................................................................................................................ACTAAAA--------GCGG----AGAATACGAA......2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................TTCAACATATTTAGCACTCAAA..................................................................................2221.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................ACTTGTCGGCACTGGAGT---------...............................................................................................................................................1821.002000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................................................................................................................................................................TGTTCAACATATTTAGCA........................................................................................1821.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000
........................................................................TTCCAGGACATTGACAAC........................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTG...............................................................................................................2321.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
droSim2
T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCAGGACATCGAG----------------------------CTGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
No Reads
droSec2
T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCAGGACATCGAG----------------------------CTGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
No Reads
droYak3
T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCGGGACTTCGTA----------------------------CTGTATG---------ACAG---ACTATATA-TACAATACGA---------AGCCTCTGAAATTTTCTGCGCTCAAGTACCAAA-AACTAC--------------------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
......................................................................................................................................................AATACGA---------AGCCTCTGAAATTTT.............................................................................................221129.0012911211000150000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTGT...........................................................................................................................................................22184.00846031110180000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTTCT...........................................................................................23130.0030300000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTG............................................................................................................................................................21128.0028710000200000
......................................................................................................................................................AATACGA---------AGCCTCTGAAATTT..............................................................................................21123.0023211000010000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTGG...........................................................................................................................................................22118.0018180000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTGC...........................................................................................................................................................22111.0011110000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CT.............................................................................................................................................................2018.00800001160000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------C..............................................................................................................................................................1916.00660000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTGTT..........................................................................................................................................................2315.00550000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTGTA..........................................................................................................................................................2315.00550000000000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTTCTG..........................................................................................2415.00550000000000
......................................................................................................................................................AATACGA---------AGCCTCTGAAATT...............................................................................................2013.00330000000000
........................................................................................................................................................TACGA---------AGCCTCTGAAATTTTCT...........................................................................................2213.00330000000000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTTC............................................................................................2212.00210000010000
........................................................................................................................................................TACGA---------AGCCTCTGAAATTTTCTG..........................................................................................2312.00220000000000
..........................................................................CCGGGACTTCGTA----------------------------CTGTA..........................................................................................................................................................1811.00110000000000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTTCC...........................................................................................2311.00110000000000
.........................................................................TCCGGGACTTCGTA----------------------------CTGTATG---------A..............................................................................................................................................2211.00101000000000
......................................................................GTTTCCGGGACTTCGTA----------------------------CTGTT..........................................................................................................................................................2211.00110000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTT............................................................................................................................................................2111.00110000000000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTTCTGC.........................................................................................2511.00110000000000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTT.............................................................................................2111.00110000000000
........................................................................................................................................................TACGA---------AGCCTCTGAAATTTTC............................................................................................2111.00110000000000
.....................................................................................................................................................CAATACGA---------AGCCTCTGAAATTTT.............................................................................................2311.00100000100000
droEre2
T----------------------------------------------------TGGTATTAAGGCAACAAGTTTCAGGGACTTCGCA----------------------------CTGTAT---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
No Reads

Generated: 10/20/2015 at 07:44 PM

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004909:7956376-7956580 + dwi_140 confident TTAGCTTAAATGCACAATTTATGCACTATGGAAATAATTAATTGGATATTGGTTGGTATTATCGCAGCAAGTTTCCGGGATATCGTA----------------------------CTGTATT---------TCTAAACATTTCATA-TACAATACGA---------AACCTCAGAAATTTGCTGCGGTTAGTTACCGTT-AACAACTCATAAGAAA-GGAGAGAA------------TAAAA--------ATGATCAATATACATGTGTGTGTG
droVir3 scaffold_13042:907857-907872 - T----------------------------------------------------GTGTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTG
droMoj3 scaffold_6496:4195040-4195086 - C----------------------------------------------------AAAAAAAATGAGAAAATACCT-------------------------------------------------------------------------------------------------------------ATACATA------------------------------------------------------------------CATATGCATGTGTGTGTG
droGri2 scaffold_15081:2044829-2044996 - dgr_10 confident T-----------------------------------------------------GGTATTGCTGCTGCAAATTTCCGCGGTGTCGTA----------------------------TTGTATTATCAAAATGGTAT---ACTCTGAACCACAATACGA---------TTCCTCAGAAATTCGCTGCTGTAAGTTACCGTT-TTCAACCGTATAGCAACTGTGCCGATAAACCTATC-------CCAGTCTATCGA----TAGACA-ACGATTGTC
dp5 3:5184418-5184437 + T----------------------------------------------------CCATGTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTG
droAna3 scaffold_13417:2468029-2468191 - T-----------------------------------------------------GGTATTATGGCAGCGAGTTTCCGGGATCTCGTA----------------------------CTGTATG---------AAGT---TTTCTATA-TACAATTCGA---------AAACTCAGAAACTTCCTGCCGTGAGCTACCATTGATCAACGGCTGAGTATGCGACC-GGAAAGGGGACG-------CGAATGCGAGGACTAAAGGATGCGCGGATGCG
droBip1 scf7180000395874:40395-40520 - G-------------------------------------------GGGAGTGCCTGGTATTATGGCAGCGAGTTTCCGGGATCTCGTA----------------------------GTGTATG---------AAGT---TTTATAAA-TACAATTCGA---------AAACTCAGAAACTTTCTGCCTTGAAGTACATTC-ATCAACGGCCGAGTA------------------------------------------------------ATATA
droKik1 scf7180000302517:1183445-1183567 + T-----------------------------------------------------GGTATAGCCGCAGAAAGTTTCCGAG-TTTCGTA----------------------------ATGTATG---------GTTA--TATTTGAAA-TACAGTACGA---------GACATCAGAAATTTTCGGCAGTTAGCTACCGTA-AACAACCAAAAATGGA-GCAAGGAG------------CA----------------------------------A
droFic1 scf7180000454073:1733616-1733722 + T----------------------------------------------------CGGTATTATCGCAGCAAGTTTCCGGGACTTCGTA----------------------------CTGTATG---------AAGA---ATTCTATA-TACAATACGA---------AACCTCAGAAATTTATTGCAATGAACCACCTTT-AACTATTGAT----------------------------------------------------------------
droEle1 scf7180000490751:1118514-1118622 + T----------------------------------------------------TGGTATTATCGCAGCAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------ACAA---ATTCTATA-TACAATACGA---------AACCTTAGAAATTTTCTGAAGTTAGCTACCATA-CACTACCAATAA--------------------------------------------------------------
droRho1 scf7180000761121:190394-190496 - T----------------------------------------------------TGGTATTATCGCAGCAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------ACAA---ATTCTATA-TACAATACGA---------AACCTTAGAAATTTTCTGCAGTTATCTACCATT-AACTAC--------------------------------------------------------------------
droBia1 scf7180000302069:1151364-1151463 - T----------------------------------------------------TGGTATTATCGCAACAAGTTTCCGGGATTTTGTA----------------------------TTGTATG---------ACTA--GATTCTATA-TACAATACGA---------AACCTCAGAAATTTTCTGCAGTTAACTACCATA-AA------------------------------------------------------------------------
droTak1 scf7180000415169:845124-845246 - T----------------------------------------------------TGGTATTATCGCAACAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------CTGA---ATTCTATA-TACAATACGA---------AAGCTCAGAAATTTTCTGCAGTTAACTACCATT-AACTACTTACTACGAA-GGATGGAT------------T-----------------------------------A
droEug1 scf7180000409230:879979-880090 - T----------------------------------------------------TGGTATTATCGCAATAAGTTCCTGGGATTTCGCA----------------------------CTGTATT---------ACGA---TTTTTACA-TACAATACGA---------AAGCTCAGAAACTAACTGCAATTAACTACCGTA-AACTACGGATGAGA-----------------------------------------------------------A
dm3 chrX:19452595-19452757 + dme-mir-4966-2 Known_mirbase T----------------------------------------------------TGGTATTATGGCAAAAAGTTTCCAGGACATTGACAACCTATATATGTATGTACTTGTCGGCACTGGAGT---------AC---------TAAA-TATATTGCACATGTTCATGCATGTTCAACATATTTAGCACTCAAGTACCGAA-AA--------------------------ATGAACAACTAAAA--------GCGG----AGAATACGAAAGTG-C
droSim2 x:18341756-18341796 + T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCAGGACATCGAG----------------------------CTGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_8:1734626-1734666 + T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCAGGACATCGAG----------------------------CTGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 X:11886139-11886241 - dya_51 novel T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCGGGACTTCGTA----------------------------CTGTATG---------ACAG---ACTATATA-TACAATACGA---------AGCCTCTGAAATTTTCTGCGCTCAAGTACCAAA-AACTAC--------------------------------------------------------------------
droEre2 scaffold_4690:9688639-9688679 + T----------------------------------------------------TGGTATTAAGGCAACAAGTTTCAGGGACTTCGCA----------------------------CTGTAT---------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TTAGCTTAAATGCACAATTTATGCACTATGGAAATAATTAATTGGATATTGGTTGGTATTATCGCAGCAAGTTTCCGGGATATCGTA----------------------------CTGTATT---------TCTAAACATTTCATA-TACAATACGA---------AACCTCAGAAATTTGCTGCGGTTAGTTACCGTT-AACAACTCATAAGAAA-GGAGAGAA------------TAAAA--------ATGATCAATATACATGTGTGTGTGSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTA..........................................................................................................................................................231290.0029023605310
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTGCT...........................................................................................231173.00173101811566
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTAT.........................................................................................................................................................221161.0016112323402
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGT...........................................................................................................................................................221139.001394908901
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTAA.........................................................................................................................................................241124.0012410302100
.....................................................................AGTTTCCGGGATATCGTA----------------------------C..............................................................................................................................................................19138.0038380000
........................................................................TTCCGGGATATCGTA----------------------------CTGTATT---------T..............................................................................................................................................23133.0033300300
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTG............................................................................................................................................................21121.0021002001
........................................................................TTCCGGGATATCGTA----------------------------CTGTATT---------...............................................................................................................................................22116.0016130300
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTGC............................................................................................22113.001331324
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTATT---------...............................................................................................................................................2317.00750200
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTC..........................................................................................................................................................2317.00760100
........................................................................................................................................................TACGA---------AACCTCAGAAATTTGCT...........................................................................................2216.00600402
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGC...........................................................................................................................................................2216.00660000
.....................................................................AGTTTCCGGGATATCGTA----------------------------CT.............................................................................................................................................................2016.00610500
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTAC.........................................................................................................................................................2216.00660000
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTAT.........................................................................................................................................................2416.00650001
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTA..........................................................................................................................................................2115.00540100
......................................................................................................................................................AATACGA---------AACCTCAGAAATTTG.............................................................................................2215.00530200
.........................................................................TCCGGGATATCGTA----------------------------CTGTATT---------T..............................................................................................................................................2215.00550000
......................................................................GTTTCCGGGATATCGTA----------------------------CTGTA..........................................................................................................................................................2214.00430100
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGG...........................................................................................................................................................2214.00440000
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTAC.........................................................................................................................................................2413.00330000
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTGCTT..........................................................................................2413.00300201
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTAAA---------...............................................................................................................................................2512.00210100
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTT..........................................................................................................................................................2312.00200200
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTG.............................................................................................2112.00210100
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTATA---------A..............................................................................................................................................2412.00220000
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTGCTA..........................................................................................2412.00200101
.......................................................................................................................................................ATACGA---------AACCTCAGAAATTTGCC...........................................................................................2312.00210100
........................................................................TTCCGGGATATCGTA----------------------------CTGTAT.........................................................................................................................................................2112.00220000
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTAA.........................................................................................................................................................2211.00110000
...................................................................CAAGTTTCCGGGATATCGTA----------------------------CT.............................................................................................................................................................2211.00110000
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTAG.........................................................................................................................................................2411.00110000
.....................................................................AGTTTCCGGGATATCGTA----------------------------...............................................................................................................................................................1811.00100100
......................................................................................................................................................AATACGA---------AACCTCAGAAATTTGT............................................................................................2311.00100001
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTCA.........................................................................................................................................................2411.00110000
......................................................................GTTTCCGGGATATCGTA----------------------------CTGTAAA---------...............................................................................................................................................2411.00110000
........................................................................TTCCGGGATATCGTA----------------------------CTGTATT---------A..............................................................................................................................................2311.00110000
....................................................................AAGTTTCCGGGATATCGTA----------------------------CTA............................................................................................................................................................2211.00100100
......................................................................GTTTCCGGGATATCGTA----------------------------CTGTAA.........................................................................................................................................................2311.00110000
....................................................................AAGTTTCCGGGATATCGTA----------------------------CTG............................................................................................................................................................2211.00100100
....................................................................AAGTTTCCGGGATATCGTA----------------------------CT.............................................................................................................................................................2111.00100001
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGTCC.........................................................................................................................................................2411.00110000
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTATT---------AA.............................................................................................................................................2511.00110000
.......................................................................TTTCCGGGATATCGTA----------------------------CTGTAG.........................................................................................................................................................2211.00110000
.....................................................................AGTTTCCGGGATATCGTA----------------------------CTGA...........................................................................................................................................................2211.00100100
droVir3
T----------------------------------------------------GTGTGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
No Reads
droMoj3
C----------------------------------------------------AAAAAAAATGAGAAAATACCT-------------------------------------------------------------------------------------------------------------ATACATA------------------------------------------------------------------CATATGCATGTGTGTGTGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
No Reads
droGri2
T-----------------------------------------------------GGTATTGCTGCTGCAAATTTCCGCGGTGTCGTA----------------------------TTGTATTATCAAAATGGTAT---ACTCTGAACCACAATACGA---------TTCCTCAGAAATTCGCTGCTGTAAGTTACCGTT-TTCAACCGTATAGCAACTGTGCCGATAAACCTATC-------CCAGTCTATCGA----TAGACA-ACGATTGTCSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
....................................................................AAATTTCCGCGGTGTCGTA----------------------------TTG............................................................................................................................................................22174.0074173
...................................................................CAAATTTCCGCGGTGTCGTA----------------------------TT.............................................................................................................................................................22154.0054153
...................................................................CAAATTTCCGCGGTGTCGTA----------------------------T..............................................................................................................................................................21120.0020020
....................................................................AAATTTCCGCGGTGTCGTA----------------------------TT.............................................................................................................................................................21116.0016115
....................................................................AAATTTCCGCGGTGTCGTA----------------------------T..............................................................................................................................................................2014.00404
.......................................................................................................................................................ATACGA---------TTCCTCAGAAATTCGCT...........................................................................................2313.00303
....................................................................AAATTTCCGCGGTGTCGTA----------------------------TTT............................................................................................................................................................2212.00202
...................................................................CAAATTTCCGCGGTGTCGTA----------------------------TTG............................................................................................................................................................2312.00202
...................................................................CAAATTTCCGCGGTGTCGTA----------------------------TTT............................................................................................................................................................2312.00202
.......................................................................................................................................................ATACGA---------TTCCTCAGAAATTCG.............................................................................................2112.00202
........................................................................................................................................................TACGA---------TTCCTCAGAAATTCGCT...........................................................................................2211.00101
...................................................................CAAATTTCCGCGGTGTCGTA----------------------------...............................................................................................................................................................2011.00101
.......................................................................................................................................................ATACGA---------TTCCTCAGAAATTCGCTT..........................................................................................2411.00101
dp5
T----------------------------------------------------CCATGTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTGTGTGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
No Reads
droAna3
T-----------------------------------------------------GGTATTATGGCAGCGAGTTTCCGGGATCTCGTA----------------------------CTGTATG---------AAGT---TTTCTATA-TACAATTCGA---------AAACTCAGAAACTTCCTGCCGTGAGCTACCATTGATCAACGGCTGAGTATGCGACC-GGAAAGGGGACG-------CGAATGCGAGGACTAAAGGATGCGCGGATGCGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.......................................................................................................................................................ATTCGA---------AAACTCAGAAACTTCCT...........................................................................................23146.00463105829
......................................................................................................................................................AATTCGA---------AAACTCAGAAACTTC.............................................................................................22120.0020410447
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTG............................................................................................................................................................21117.00173000131
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTGT...........................................................................................................................................................22114.0014500180
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTGTA..........................................................................................................................................................23111.0011400241
.....................................................................................................................................................CAATTCGA---------AAACTCAGAAACTTC.............................................................................................23110.0010010423
........................................................................................................................................................TTCGA---------AAACTCAGAAACTTCCT...........................................................................................2216.006000114
.....................................................................................................................................................CAATTCGA---------AAACTCAGAAACTT..............................................................................................2214.004000022
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CT.............................................................................................................................................................2013.003000012
......................................................................................................................................................AATTCGA---------AAACTCAGAAACTTCC............................................................................................2313.003100011
.......................................................................................................................................................ATTCGA---------AAACTCAGAAACTTCCTT..........................................................................................2412.002100001
.......................................................................................................................................................ATTCGA---------AAACTCAGAAACTTC.............................................................................................2111.001000010
...................................................................CGAGTTTCCGGGATCTCGTA----------------------------CTGTATG---------A..............................................................................................................................................2811.001100000
.......................................................................TTTCCGGGATCTCGTA----------------------------CTGTAT.........................................................................................................................................................2211.001000010
.......................................................................................................................................................ATTCGA---------AAACTCAGAAACTTCCC...........................................................................................2311.001000001
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTT............................................................................................................................................................2111.001000010
......................................................................................................................................................AATTCGA---------AAACTCAGAAACTTT.............................................................................................2211.001100000
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTGTAAA---------...............................................................................................................................................2511.001000100
......................................................................................................................................................AATTCGA---------AAACTCAGAAACTTCA............................................................................................2311.001100000
.......................................................................................................................................................ATTCGA---------AAACTCAGAAACTTCC............................................................................................2211.001000001
....................................................................GAGTTTCCGGGATCTCGTA----------------------------CT.............................................................................................................................................................2111.001000010
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTA............................................................................................................................................................2111.001000010
......................................................................GTTTCCGGGATCTCGTA----------------------------CTG............................................................................................................................................................2011.001000100
....................................................................GAGTTTCCGGGATCTCGTA----------------------------CTG............................................................................................................................................................2211.001000010
.....................................................................AGTTTCCGGGATCTCGTA----------------------------CTGTAA.........................................................................................................................................................2411.001000010
.......................................................................TTTCCGGGATCTCGTA----------------------------CTGTATG---------...............................................................................................................................................2311.001100000
...........................................................................CGGGATCTCGTA----------------------------CTGTATG---------AAG............................................................................................................................................2211.001000010
...............................................................................................................................................ATA-TACAATTCGA---------AAACTCAGA...................................................................................................2211.001000010
......................................................................GTTTCCGGGATCTCGTA----------------------------CTGTT..........................................................................................................................................................2211.001100000
...................................................................CGAGTTTCCGGGATCTCGTA----------------------------C..............................................................................................................................................................2111.001000010
....................................................................GAGTTTCCGGGATCTCGTA----------------------------CTGA...........................................................................................................................................................2311.001000010
droBip1
G-------------------------------------------GGGAGTGCCTGGTATTATGGCAGCGAGTTTCCGGGATCTCGTA----------------------------GTGTATG---------AAGT---TTTATAAA-TACAATTCGA---------AAACTCAGAAACTTTCTGCCTTGAAGTACATTC-ATCAACGGCCGAGTA------------------------------------------------------ATATASizeHit CountTotal NormTotal
No Reads
droKik1
T-----------------------------------------------------GGTATAGCCGCAGAAAGTTTCCGAG-TTTCGTA----------------------------ATGTATG---------GTTA--TATTTGAAA-TACAGTACGA---------GACATCAGAAATTTTCGGCAGTTAGCTACCGTA-AACAACCAAAAATGGA-GCAAGGAG------------CA----------------------------------ASizeHit CountTotal NormTotal
No Reads
droFic1
T----------------------------------------------------CGGTATTATCGCAGCAAGTTTCCGGGACTTCGTA----------------------------CTGTATG---------AAGA---ATTCTATA-TACAATACGA---------AACCTCAGAAATTTATTGCAATGAACCACCTTT-AACTATTGAT----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
T----------------------------------------------------TGGTATTATCGCAGCAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------ACAA---ATTCTATA-TACAATACGA---------AACCTTAGAAATTTTCTGAAGTTAGCTACCATA-CACTACCAATAA--------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
T----------------------------------------------------TGGTATTATCGCAGCAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------ACAA---ATTCTATA-TACAATACGA---------AACCTTAGAAATTTTCTGCAGTTATCTACCATT-AACTAC--------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
T----------------------------------------------------TGGTATTATCGCAACAAGTTTCCGGGATTTTGTA----------------------------TTGTATG---------ACTA--GATTCTATA-TACAATACGA---------AACCTCAGAAATTTTCTGCAGTTAACTACCATA-AA------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
T----------------------------------------------------TGGTATTATCGCAACAAGTTTCCGGGATTTCGTA----------------------------CTGTATG---------CTGA---ATTCTATA-TACAATACGA---------AAGCTCAGAAATTTTCTGCAGTTAACTACCATT-AACTACTTACTACGAA-GGATGGAT------------T-----------------------------------ASizeHit CountTotal NormTotal
No Reads
droEug1
T----------------------------------------------------TGGTATTATCGCAATAAGTTCCTGGGATTTCGCA----------------------------CTGTATT---------ACGA---TTTTTACA-TACAATACGA---------AAGCTCAGAAACTAACTGCAATTAACTACCGTA-AACTACGGATGAGA-----------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
dm3
T----------------------------------------------------TGGTATTATGGCAAAAAGTTTCCAGGACATTGACAACCTATATATGTATGTACTTGTCGGCACTGGAGT---------AC---------TAAA-TATATTGCACATGTTCATGCATGTTCAACATATTTAGCACTCAAGTACCGAA-AA--------------------------ATGAACAACTAAAA--------GCGG----AGAATACGAAAGTG-CSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTT................................................................................................................2228267.001653400000000100200000000000104000000000000001010101000120000000000000000000000000000000000100200100110022000101020013016000001000000000001000000000000100000009200000000000000240200010153010790000042735664000026402720000001000000000031800112512006253310000000000110029001505616000100032143432171203700010303211312101932504001001701360000041324830012013020601100667543780
........................................................................................................................................................................TGTTCAACATATTTAGCACTCA....................................................................................2221704.503409000002000011100000000000900000000000000000010010000000000000000000000000000000000007001002416009401830018010001515087821380000000000000000000000000000010000000000000000000001000005310001000000087312700009301900000000000000000110011024105000300000000000002100601400000000040769000010000000000500000003180111000400000000013470000002000500100113690210
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGT.................................................................................................................212655.001310000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000100100100000000000000000000000000000000000000000000000000000000000000000000000000111000000000000302500001101000000000000000000010000000001011000000000000001000011000000000203110010000000000003010000000000000000031000001034600000090002000000561030
........................................................................................................................................................................TGTTCAACATATTTAGCACTC.....................................................................................212401.0080200000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000030010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000026034000027090000000000000000000001101100000000000000000000300210320000000000298000000000000000210000011000000000300000000005200000000000010001319040
......................................................................................................................................................................CATGTTCAACATATTTAGCACT......................................................................................222213.50427000000000000000000000001000000000000000000000000000000000000000000000000000000000000100000010010010000000010000300000000000000000000000000000000000000000000000000000010000002110000000000111090000907000000000000000000000010110010000000000000000020020000000000001077001000000000000000001002020000000301100000102170000003000100000044040
........................................................................................................................................................................TGTTCAACATATTTAGCACT......................................................................................202114.502290000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000302000000000000000000000000000001000000000000000000000010000000000096000000000000000000000000000000000000000000001100000000000000000111000
.......................................................................................................................AGT---------AC---------TAAA-TATATTGCACATG..................................................................................................................22297.0019400000000000000000000000200000000000000000000000000000000000000000000000000000000010000010000170080010000000000300000000000000000000000000000000000000000000000000000000000003123010060000004010000090800000000000000000010000001001000000000000000002001000000000000003500001000000000000000000001000000000000000000370000000000000000033010
.......................................................................................................TACTTGTCGGCACTGGAGT---------...............................................................................................................................................19180.00800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000001000000000000000000010000000065000000001000000006000
.......................................................................................................TACTTGTCGGCACTGGAG.........................................................................................................................................................18165.0065000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000002400000000000000000000000200000000000010000000100000000000000000025000
.......................................................................................................................................................................ATGTTCAACATATTTAGCACTC.....................................................................................22264.5012900000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000010010010000000000300000000000000000000000000000000000000000000000000000000000000000000000000010021000010040000000000000000001000001100000000000000000000200100000000000000600000000000000000000000101000000010000000000421000000000000000116020
...........................................................................................................................................................................TCAACATATTTAGCACTCAAGT.................................................................................22259.00118000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104000030000000000000000000000000000000000000000000000000000000000000000001400100000000000000000000000000000000000000000810000000000000000012010
......................................................................................................GTACTTGTCGGCACTGGAG.........................................................................................................................................................19137.00370000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000034000000000000000002000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTC...............................................................................................................23232.0064000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000503000050200000000000000000000000000000000000000000000000002000000000000001400000000000000000000000000000000000100000000120000001000000000014000
...................................................................................................................................AC---------TAAA-TATATTGCACATGTT................................................................................................................21229.5059000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002400000000000000000000000000000000000000000000160000000000000000016010
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTCAT.............................................................................................................25225.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000200001010000000000000000000000000000000000000000000000000000000000000000140000000000000000000000000000000000000000000070000000000000000021000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTT...............................................................................................................23222.504500000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000100000000000180000000000000000000000000000000000000000000050000000000000000017000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCC....................................................................................22220.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000001020000000000000000001000000000000000000000000000000000000000000000130000000000000000000000000000000000000000000020000000000000000018000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATG..................................................................................................................20219.503900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000010000000000170000000000000000000000000000000000000000000010000000000000000018000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTC................................................................................................................22219.003800000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100001000000000000000000000000000000000000000000000000100000000000000010140000000000000001000000000100000000000000000010000000000000000014000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCT....................................................................................22218.00360000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000000000000001000000000000000000000000000000000000018000000000000000000000000000000000000000000002000000000000000009000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTCA..............................................................................................................24217.003400000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000010000000000000000030000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000001000000000000000000000000000000000000000000020110000000000000001000000000000000000000000000020000000000000000010000
....................................................................................................ATGTACTTGTCGGCACTGGAG.........................................................................................................................................................21116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000014000000000000000000000
..........................................................................................................................................................................TTCAACATATTTAGCACTCAAGT.................................................................................23215.00300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000100000000000000000000000000100000000000000000000000000000000000000040000000000000000000000000000000000000000000019000000100000000002000
.....................................................................................................TGTACTTGTCGGCACTGGAG.........................................................................................................................................................20112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000010000002000
..........................................................................................................................................................................TTCAACATATTTAGCACTCAAG..................................................................................22210.5021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000104000000000000000000000000000000000000000000008000000000000000007000
.......................................................................................................................................................................ATGTTCAACATATTTAGCACT......................................................................................2129.5019000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000003000000100000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000004000000000000000006010
...........................................................................................................................................................................TCAACATATTTAGCACTCAAG..................................................................................2129.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000009000000000000000006000
...................................................................................................TATGTACTTGTCGGCACTGGAG.........................................................................................................................................................2219.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000000000000000000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTA...............................................................................................................2327.5015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000000100000000000000000000000000000006000000000000000000000000000000000000000000001000000000000000005000
....................................................................................................ATGTACTTGTCGGCACTGG...........................................................................................................................................................1917.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000001000
.......................................................................................................................AGT---------AC---------TAAA-TATATTGCACAT...................................................................................................................2126.5013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000004000000100000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000002000000000000000002000
..................................................................................................................ACTGGAGT---------AC---------TAAA-TATATTGCA......................................................................................................................2326.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000
..............................................................................................................................................TAAA-TATATTGCACATGTT................................................................................................................1926.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000010000000000000000000000000010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000007000
.......................................................................................................................AGT---------AC---------TAAA-TATATTGCACA....................................................................................................................2025.5011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000000000000000000000001000000000000000005000000000000000000000000000000000000000000000000000000000000003000
....................................................................................................................................C---------TAAA-TATATTGCACATGTT................................................................................................................2025.5011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000003000000000000000002000
.......................................................................................................................AGT---------AC---------TAAA-TATATTGCACATGT.................................................................................................................2325.5011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000010000006000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTCATG............................................................................................................2625.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000001010000000000000000000000000000000000001000000000000000000000000000000000000000000002000000000000000004000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACAT...................................................................................................................1925.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000100000000000000000000000000000000000000010000002000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCAT...................................................................................2324.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000004000
........................................................................................................................GT---------AC---------TAAA-TATATTGCACATG..................................................................................................................2123.507000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000021000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000
...................................................................................................................................AC---------TAAA-TATATTGCACATGT.................................................................................................................2023.507000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000001000000000000000005000
....................................................................................................................TGGAGT---------AC---------TAAA-TATATTGCA......................................................................................................................2123.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000004000000000000000000000
....................................................................................................................TGGAGT---------AC---------TAAA-TATATTGCAC.....................................................................................................................2223.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000001000000002000000000000000001000
........................................................................................................................................................................TGTTCAACATATTTAGCAC.......................................................................................1922.505000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000100000002000
......................................................................................................................................................................CATGTTCAACATATTTAGCAC.......................................................................................2122.505000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000002000000000000000001000
...................................................................................................................................AC---------TAAA-TATATTGCACATGTTCATG............................................................................................................2522.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000002000000000000000000000
.....................................................................................................TGTACTTGTCGGCACTGG...........................................................................................................................................................1812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
...................................................................................................................................AC---------TAAA-TATATTGCACATGTTCAT.............................................................................................................2422.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTCATGT...........................................................................................................2722.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000001000
...................................................................................................................................AC---------TAAA-TATATTGCACATGTTC...............................................................................................................2222.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000010000000000000000000000000001000000000000000000000
...................................................................................................................................AC---------TAAA-TATATTGCACATGTTCA..............................................................................................................2322.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................TTCAACATATTTAGCACTCA....................................................................................2022.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000003000
........................................................................................................................GT---------AC---------TAAA-TATATTGCACATGT.................................................................................................................2222.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000
...............................................................................................................................................AAA-TATATTGCACATGTT................................................................................................................1822.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................GTACTTGTCGGCACTGGAGT---------...............................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000
.........................................................................................................................................................................GTTCAACATATTTAGCACTCA....................................................................................2122.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000
..................................................................................................................ACTGGAGT---------AC---------TAAA-TATATTG........................................................................................................................2121.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACA....................................................................................................................1821.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TGTTCAACATATTTAGCACTTT....................................................................................2221.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCG....................................................................................2221.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTATC.............................................................................................................2521.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................CATGTTCAACATATTTAGCACTT.....................................................................................2321.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000001000000000000000000000
........................................................................................................................GT---------AC---------TAAA-TATATTGCACATGTTCATG............................................................................................................2721.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGC.................................................................................................................2121.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000001000
....................................................................................................................TGGAGT---------AC---------TAAA-TATATTGC.......................................................................................................................2021.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000002000000000000000000000
........................................................................................................................GT---------AC---------TAAA-TATATTGCACATGTT................................................................................................................2321.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................AACATATTTAGCACTCAAGT.................................................................................2021.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000
....................................................................................................ATGTACTTGTCGGCACTGGA..........................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.......................................................................................................................................................................ATGTTCAACATATTTAGCACTCC....................................................................................2321.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TACTTGTCGGCACTGGAA.........................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................GTATGTACTTGTCGGCACTGGAG.........................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCAATC.................................................................................2521.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGG.................................................................................................................2121.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000
.......................................................................................................TACTTGTCGGCACTGGAGT---------AT---------C...................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TGTTCAACATATTTAGCACTCTT...................................................................................2321.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................TGTTCAACATATTTAGCACTT.....................................................................................2121.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................TCAACATATTTAGCACTCAA...................................................................................2021.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000
...........................................................................................................................................................................................................................................ACTAAAA--------GCGG----AGAATACGAA......2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................TTCAACATATTTAGCACTCAAA..................................................................................2221.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................ACTTGTCGGCACTGGAGT---------...............................................................................................................................................1821.002000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................................................................................................................................................................TGTTCAACATATTTAGCA........................................................................................1821.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000
........................................................................TTCCAGGACATTGACAAC........................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................T---------AC---------TAAA-TATATTGCACATGTTG...............................................................................................................2321.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
droSim2
T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCAGGACATCGAG----------------------------CTGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
No Reads
droSec2
T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCAGGACATCGAG----------------------------CTGTGT---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
No Reads
droYak3
T----------------------------------------------------TGGTATTATGGCAACAAGTTTCCGGGACTTCGTA----------------------------CTGTATG---------ACAG---ACTATATA-TACAATACGA---------AGCCTCTGAAATTTTCTGCGCTCAAGTACCAAA-AACTAC--------------------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
......................................................................................................................................................AATACGA---------AGCCTCTGAAATTTT.............................................................................................221129.0012911211000150000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTGT...........................................................................................................................................................22184.00846031110180000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTTCT...........................................................................................23130.0030300000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTG............................................................................................................................................................21128.0028710000200000
......................................................................................................................................................AATACGA---------AGCCTCTGAAATTT..............................................................................................21123.0023211000010000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTGG...........................................................................................................................................................22118.0018180000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTGC...........................................................................................................................................................22111.0011110000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CT.............................................................................................................................................................2018.00800001160000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------C..............................................................................................................................................................1916.00660000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTGTT..........................................................................................................................................................2315.00550000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTGTA..........................................................................................................................................................2315.00550000000000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTTCTG..........................................................................................2415.00550000000000
......................................................................................................................................................AATACGA---------AGCCTCTGAAATT...............................................................................................2013.00330000000000
........................................................................................................................................................TACGA---------AGCCTCTGAAATTTTCT...........................................................................................2213.00330000000000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTTC............................................................................................2212.00210000010000
........................................................................................................................................................TACGA---------AGCCTCTGAAATTTTCTG..........................................................................................2312.00220000000000
..........................................................................CCGGGACTTCGTA----------------------------CTGTA..........................................................................................................................................................1811.00110000000000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTTCC...........................................................................................2311.00110000000000
.........................................................................TCCGGGACTTCGTA----------------------------CTGTATG---------A..............................................................................................................................................2211.00101000000000
......................................................................GTTTCCGGGACTTCGTA----------------------------CTGTT..........................................................................................................................................................2211.00110000000000
.....................................................................AGTTTCCGGGACTTCGTA----------------------------CTT............................................................................................................................................................2111.00110000000000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTTCTGC.........................................................................................2511.00110000000000
.......................................................................................................................................................ATACGA---------AGCCTCTGAAATTTT.............................................................................................2111.00110000000000
........................................................................................................................................................TACGA---------AGCCTCTGAAATTTTC............................................................................................2111.00110000000000
.....................................................................................................................................................CAATACGA---------AGCCTCTGAAATTTT.............................................................................................2311.00100000100000
droEre2
T----------------------------------------------------TGGTATTAAGGCAACAAGTTTCAGGGACTTCGCA----------------------------CTGTAT---------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
No Reads

Generated: 10/20/2015 at 07:44 PM