ID:

dwi_139

 Coordinate:

scf2_1100000004909:7955386-7955474 -

 Confidence:

confident

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-22.7 -22.7 -22.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CACCATTCTCATAAAATTTCGTAGCAGCACAGCTTTAGAAGGAAATCAAGGTTGAGAGTAAGTAGAGAGAGATAGAGAGATTTAGTATAGAACCATTTAATCCTTTATCCTTTCACTTTGCAGTCACTTATGTATGTAACGGGACCAGTTTCTGCGATGGCGTTACAATGTTATTAAAGATACGATGTA

******************************************....((((((.((..((((((.(((((.(((((((.((((.(((........))).)))))))))))))))))).))))..)))))).))......*************************************************** 		Read size # Mismatch Hit Count Total Norm Total V117

male body		 V119

head

 M020

head

 V118

embryo

 M045

female body
.........................................................GTAAGTAGAGAGAGATAGAGA............................................................................................................... 21 0 1 84.00 84 82 2 0 0 0
.........................................................GTAAGTAGAGAGAGATAGAGAGA............................................................................................................. 23 0 1 73.00 73 71 2 0 0 0
.........................................................GTAAGTAGAGAGAGATAGAG................................................................................................................ 20 0 1 19.00 19 19 0 0 0 0
.........................................................GTAAGTAGAGAGAGATAGAGAG.............................................................................................................. 22 0 1 18.00 18 18 0 0 0 0
.........................................................GTAAGTAGAGAGAGATAGAGAGATT........................................................................................................... 25 0 1 18.00 18 18 0 0 0 0
.........................................................GTAAGTAGAGAGAGATAGA................................................................................................................. 19 0 1 15.00 15 13 2 0 0 0
.........................................................GTAAGTAGAGAGAGATAGAGAGAT............................................................................................................ 24 0 1 12.00 12 12 0 0 0 0
.........................................................GTAAGTAGAGAGAGATAGAGAA.............................................................................................................. 22 1 1 4.00 4 3 1 0 0 0
....................................................................................................TCCTTTATCCTTTCACTTTGCAGTT................................................................ 25 1 1 3.00 3 0 1 2 0 0
.........................................................GTAAGTAGAGAGAGATAGAGAGT............................................................................................................. 23 1 1 3.00 3 3 0 0 0 0
.........................................................GTAAGTAGAGAGAGATAGAGT............................................................................................................... 21 1 1 3.00 3 3 0 0 0 0
.........................................................GTAAGTAGAGAGAGATAGAGAGATTG.......................................................................................................... 26 1 1 3.00 3 3 0 0 0 0
..........................................................TAAGTAGAGAGAGATAGAG................................................................................................................ 19 0 1 2.00 2 2 0 0 0 0
.........................................................GTAAGTAGAGAGAGATAGAGAGATC........................................................................................................... 25 1 1 2.00 2 2 0 0 0 0
.........................................................GTAAGTAGAGAGAGATAGAGAGATTTTTT....................................................................................................... 29 2 1 1.00 1 1 0 0 0 0
.........................................................GTAAGTAGAGAGAGATAGAGAGATTT.......................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.........................................................GTAAGCAGAGAGAGATAGAGAGATT........................................................................................................... 25 1 1 1.00 1 1 0 0 0 0
.........................................................GTAAGTAGAGAGAGATATAG................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0
.........................................................GTAAGTAGAGAGAGATAGAGAGATTTC......................................................................................................... 27 1 1 1.00 1 1 0 0 0 0
.........................................................GGAAGTAGAGAGAGATAGAGAGATT........................................................................................................... 25 1 1 1.00 1 1 0 0 0 0
.........................................................GTAAGTAGAGAGAGATAGAGAGATA........................................................................................................... 25 1 1 1.00 1 1 0 0 0 0
....................................................................................................TCCTTTATCCTTTCACTTTGCAG.................................................................. 23 0 1 1.00 1 0 0 1 0 0
.........................................................GTAAGTAGAGAGAGATAGAGAGATTC.......................................................................................................... 26 1 1 1.00 1 1 0 0 0 0
.........................AGCACAGCTTTATGAGGAAA................................................................................................................................................ 20 2 1 1.00 1 0 0 0 1 0
.........................................................GTAAGTAGAGAGAGATAGAGAGATTTCC........................................................................................................ 28 2 1 1.00 1 1 0 0 0 0
.........................................................GTAAGTAGAGAGAGATACAGA............................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
.........................................................GTAAGTAGAGAGAGATAGAGAGAA............................................................................................................ 24 1 1 1.00 1 1 0 0 0 0
.........................................................GTAAGTAGAGAGAGATAGACAGA............................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
.........................................................GTAACTAGAGAGAGATAGAGAG.............................................................................................................. 22 1 1 1.00 1 1 0 0 0 0
.........................................................GTAAGTAGAGAAAGATAGAGA............................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
.........................................................GTAAGTAGAGAGAGATAG.................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0
.........................................................GTAAGTAGCGAGAGATAGAGAGA............................................................................................................. 23 1 1 1.00 1 1 0 0 0 0
.........................................................GTAAGTAGAGAGAGATAGAGAT.............................................................................................................. 22 1 1 1.00 1 1 0 0 0 0
.........................................................GTAACTAGAGAGAGATAGAGAGATT........................................................................................................... 25 1 1 1.00 1 1 0 0 0 0
.........................................................GTAAGTAGAGAGAGATAGAGAGTT............................................................................................................ 24 1 1 1.00 1 1 0 0 0 0
..........................................AAAACCAGGTTGAGAGGAAGT.............................................................................................................................. 21 3 9 0.11 1 0 0 0 0 1
...........................CACAGCTTTATGAGGAAATG.............................................................................................................................................. 20 3 17 0.06 1 0 0 0 1 0
..........................................AAAACCAGGTTGAGAGGAAG............................................................................................................................... 20 3 20 0.05 1 0 0 0 0 1
........................................................AGGAAGTAAAGAGAGATAG.................................................................................................................. 19 2 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

GTGGTAAGAGTATTTTAAAGCATCGTCGTGTCGAAATCTTCCTTTAGTTCCAACTCTCATTCATCTCTCTCTATCTCTCTAAATCATATCTTGGTAAATTAGGAAATAGGAAAGTGAAACGTCAGTGAATACATACATTGCCCTGGTCAAAGACGCTACCGCAATGTTACAATAATTTCTATGCTACAT

***************************************************....((((((.((..((((((.(((((.(((((((.((((.(((........))).)))))))))))))))))).))))..)))))).))......****************************************** 		Read size # Mismatch Hit Count Total Norm Total V119

head

 M045

female body
.......................CGTCGCGTCGAAATTTTCCTG................................................................................................................................................. 21 3 5 0.20 1 1 0
...............................................................................................................................................TGGTCACAGACGCTATTGC........................... 19 3 14 0.07 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004909:7955336-7955524 - dwi_139 confident CACCATTCTCATAAAATTTCGTAGCAGCACAGCTTTAGAAGGAAATCAAGGTTGAGAGTAAGTAGAGAGAGATAGAGAGATTTAGTATAGAACCATTTAATCCTTTATCCTTTCACTTTGCAGTCACTTATGTATGTAACGGGACCAGTTTCTGCGATGGCGTTACAATGTTATTAAAGATACGATGTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CACCATTCTCATAAAATTTCGTAGCAGCACAGCTTTAGAAGGAAATCAAGGTTGAGAGTAAGTAGAGAGAGATAGAGAGATTTAGTATAGAACCATTTAATCCTTTATCCTTTCACTTTGCAGTCACTTATGTATGTAACGGGACCAGTTTCTGCGATGGCGTTACAATGTTATTAAAGATACGATGTASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.........................................................GTAAGTAGAGAGAGATAGAGA...............................................................................................................21184.0084008202
.........................................................GTAAGTAGAGAGAGATAGAGAGA.............................................................................................................23173.0073007102
.........................................................GTAAGTAGAGAGAGATAGAG................................................................................................................20119.0019001900
.........................................................GTAAGTAGAGAGAGATAGAGAG..............................................................................................................22118.0018001800
.........................................................GTAAGTAGAGAGAGATAGAGAGATT...........................................................................................................25118.0018001800
.........................................................GTAAGTAGAGAGAGATAGA.................................................................................................................19115.0015001302
.........................................................GTAAGTAGAGAGAGATAGAGAGAT............................................................................................................24112.0012001200
.........................................................GTAAGTAGAGAGAGATAGAGAA..............................................................................................................2214.00400301
....................................................................................................TCCTTTATCCTTTCACTTTGCAGTT................................................................2513.00320001
.........................................................GTAAGTAGAGAGAGATAGAGAGT.............................................................................................................2313.00300300
.........................................................GTAAGTAGAGAGAGATAGAGT...............................................................................................................2113.00300300
.........................................................GTAAGTAGAGAGAGATAGAGAGATTG..........................................................................................................2613.00300300
..........................................................TAAGTAGAGAGAGATAGAG................................................................................................................1912.00200200
.........................................................GTAAGTAGAGAGAGATAGAGAGATC...........................................................................................................2512.00200200
.........................................................GTAAGTAGAGAGAGATAGAGAGATTT..........................................................................................................2611.00100100
.........................................................GTAAGTAGAGAGAGATAGAGAGATTTC.........................................................................................................2711.00100100
.........................................................GTAAGTAGAGAGAGATAGAGAGATA...........................................................................................................2511.00100100
....................................................................................................TCCTTTATCCTTTCACTTTGCAG..................................................................2311.00110000
.........................................................GTAAGTAGAGAGAGATAGAGAGATTC..........................................................................................................2611.00100100
.........................................................GTAAGTAGAGAGAGATAGAGAGATTTCC........................................................................................................2811.00100100
.........................................................GTAAGTAGAGAGAGATAGAGAGAA............................................................................................................2411.00100100
.........................................................GTAAGTAGAGAGAGATAG..................................................................................................................1811.00100100
.........................................................GTAAGTAGAGAGAGATAGAGAT..............................................................................................................2211.00100100

Generated: 10/20/2015 at 06:59 PM