dwi_138

TTTTCGAGCAATTGAATCCAATACATACCTAAAAATATATCGGGAATATTGTCGACATGGCCTTTTCGTGTTTGGTGATTGAACTTGGATTTTGTTCTATATACATATATAAAAATATGTAAATCTGTTCATTCCTCGACACTAGAAGTTCATGTCAATAACTTCATTTCCTGCACACAAGAAAAGCGAATCATTCATTTTTCCAATGGC *********************************************......(((((((.(((((.(((((.((.((.(((((..(((((..........(((((((......))))))))))))))))).)))).))))).))))).)))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M020 head	V117 male body	V119 head	V118 embryo
..............................................................TTTTCGTGTTTGGTGATTGAACT.............................................................................................................................	23	0	1	64.00	64	33	30	1	0
..............................................................TTTTCGTGTTTGGTGATTGAAC..............................................................................................................................	22	0	1	30.00	30	1	29	0	0
...........................................................................................................................TCTGTTCATTCCTCGACACTAG.................................................................	22	0	1	23.00	23	23	0	0	0
...............................................................................................................................TTCATTCCTCGACACTAGAAGT.............................................................	22	0	1	20.00	20	0	20	0	0
...........................................................................................................................TCTGTTCATTCCTCGACACTAGA................................................................	23	0	1	13.00	13	13	0	0	0
..............................................................TTTTCGTGTTTGGTGATTGAA...............................................................................................................................	21	0	1	9.00	9	3	6	0	0
...........................................................................................................................TCTGTTCATTCCTCGACACT...................................................................	20	0	1	5.00	5	5	0	0	0
..............................................................TTTTCGTGTTTGGTGATTGA................................................................................................................................	20	0	1	5.00	5	0	5	0	0
...............................................................TTTCGTGTTTGGTGATTGAACT.............................................................................................................................	22	0	1	2.00	2	1	1	0	0
...........................................................................................................................TCTGTTCATTCCTCGACACTA..................................................................	21	0	1	2.00	2	1	1	0	0
..............................................................TTTTCGTGTTTGTTGATTGAACT.............................................................................................................................	23	1	1	2.00	2	2	0	0	0
...........................................................................................................................TCTGTTCATTCCTCGACACTAGG................................................................	23	1	1	2.00	2	2	0	0	0
..................................................................CGTGTTTGGTGATTGAACTTGGATT.......................................................................................................................	25	0	1	2.00	2	0	0	1	1
..............................................................TTTTCGTGTTTGGTGATTGAACTT............................................................................................................................	24	0	1	2.00	2	2	0	0	0
...........................................................................................................................TCTGTTCATTCCTCGACACTAGC................................................................	23	1	1	1.00	1	1	0	0	0
...........................................................................................................................TCTGTTCATTCCTCTACACTAG.................................................................	22	1	1	1.00	1	1	0	0	0
..................................................................CGTGTTTGGTGATTGAACTTGGATC.......................................................................................................................	25	1	1	1.00	1	0	1	0	0
...............................................................................................................................TTCATTCCTCGACACTAGAAGTT............................................................	23	0	1	1.00	1	0	1	0	0
...........................................................................................................................TCTGTTCATTCCTCGACAC....................................................................	19	0	1	1.00	1	1	0	0	0
..............................................................TTTTCGTGTTTGGTTATTGAACT.............................................................................................................................	23	1	1	1.00	1	1	0	0	0
...........................................................................................................................TCCGTTCATTCCTCGACACTAG.................................................................	22	1	1	1.00	1	1	0	0	0
..............................................................TTTTCGTGTTTGCTGATTGAAC..............................................................................................................................	22	1	1	1.00	1	1	0	0	0
...........................................................................................................................TCTGTTCATTCCTCGGCACTAG.................................................................	22	1	1	1.00	1	1	0	0	0
...........................................................................................................................TCTGTTCATTCCTCGACACTAGT................................................................	23	1	1	1.00	1	1	0	0	0
..................................................................CGTGTTTGGCGATTGAACTTGGATT.......................................................................................................................	25	1	1	1.00	1	0	1	0	0
...............................................................................................................................TTCATTCCTCGACACTAGAAG..............................................................	21	0	1	1.00	1	1	0	0	0
............................................................................................................................TCTTTCATTCCTCGACACTAG.................................................................	21	3	2	0.50	1	1	0	0	0
..............................................................TTTTCGTGTTTGTTGATTGAA...............................................................................................................................	21	1	2	0.50	1	0	1	0	0

AAAAGCTCGTTAACTTAGGTTATGTATGGATTTTTATATAGCCCTTATAACAGCTGTACCGGAAAAGCACAAACCACTAACTTGAACCTAAAACAAGATATATGTATATATTTTTATACATTTAGACAAGTAAGGAGCTGTGATCTTCAAGTACAGTTATTGAAGTAAAGGACGTGTGTTCTTTTCGCTTAGTAAGTAAAAAGGTTACCG ************************************************......(((((((.(((((.(((((.((.((.(((((..(((((..........(((((((......))))))))))))))))).)))).))))).))))).)))))))....*********************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body
.........................................................................................................................................................CAGTTATTGAAGTGCTGGACG....................................	21	3	1	1.00	1	1
.................................................................................................................................................................................GTTTTTTTCCCTTAGTAAGTA............	21	2	2	0.50	1	1

Species	Coordinate	ID	Type	Alignment
droWil2	scf2_1100000004909:7946418-7946627 +	dwi_138	confident	TTTTCGAGCAA--TTGAATCCAATACATACCTAAAAATATATC----GGGAAT---A--TTG--TCGACATGGCCTTTTCGTGTTTGGTGATTGAACTTGGATTTTGTT-CTATATACATATATAAAAA-TATG-TAAATCTGTTCATTCCTCGACACTAGAAGTTCAT-GTCAATAA-CTTCATT--------------------------------------TCCTGCACACAAGAAA---AGCG------------------AAT---------------------------------CATTC-------------------ATTTTT-CCAATGGC
droVir3	scaffold_13042:918342-918434 -	dvi-mir-973	Known_mirbase	------------------------------------------------------------------GACATTCACTTTTCGTGTTCGATGTTTGAACTTGGATTTTTTT--TATAT---------------ACA-CAAATCTGTTCATTCCTCGACACTAGAAGTTTGC-GTCAATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6328:2909109-2909195 -	dmo_112	confident	--------------------------------------------------------------------------CTTTTCGTGTTCGATGTTTGAACTTGGATTTTTAA--AATAT----------GA---AAA-GAAATCTGTTCATTCCTCGACACTAAGAGTTTAG-GTCTATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13417:2478573-2478761 -	dan_104	confident	AATA-------------------------------------------------------TTGAAATGACACCGACTCCTCGTGTTTGGCGATTGAACCTGGATTTTTAA--TTTTC----------GAGTACGA-GAAATCTGTTCATTCCTCGACACTAGTAGTTGGC-GCGACAC-TCAGCGCACCA------AAC---------ATGAACCGCGGCTCAAATC------------------------------------------------------------AATCCAATCCGAATCCAATCGCGGTTGCAAT-CCT----GGCTTG-GGGTAGGT
droBip1	scf7180000395874:49621-49786 -			--------------------------------------------------------------------------CTTCTCGTGTTAGGCGATTGAACCTGGATTT-AAA--TTTTC----------GAGTACGA-GAAATCTGTTCAATCCTCGACACTAGCAGTTGGC-GCGACCGA-CTGCGCAT--AAAAAC------------ATTATTCGCGCCTCATATC--------------------------------------------------------------------CCGAA-CCAATCGCGGTTGCAAT-CCTTGGGTGGATTGGGGTAGGT
droKik1	scf7180000302517:1176216-1176374 +			---------------------------------------------------------------------ATTGACTTTTCGTGCTTGGCGATTGAAGGTGGATTTGTGA--TTTTT----------AAG-CAAT-TAAATCTGTTCAATCGTCAACACTAAAAGTTGAT-GTTATTTAGCTTCGAA-----------------------------------------------CCCCAAG-GAT-----CCTGCCTAGAACGGTGAGT-ATAGCCGG--------GA------------------------------CATC----TCCGCC-AAGCTGGT
droFic1	scf7180000454073:1723943-1724091 +			------------------------------------------------------------------GACATTGACATCTCGTGTTTGGCGAATGAGCTCGGATTTTTGTAGTATTT----------GAATAAGA-TAAATCTGTTCATTCCTCGACACAAGAAGTTGAA-GTTGATAATCAACTAA---------AACAAAGTGCTAAGGATA--------------------CGCA-----------------------------------------------------------------------------------ATTAAAAACAA-AAAAGGAG
droEle1	scf7180000490751:1106840-1107015 +			ATAC--------------------------------------AACTTAG-AATTATTTAATAGTATGACATCGACTTTTTGTGTTTGGCGGATGAACTTAGATTTTTCT--TATTT----------GTA-AAAA-CAAATCTGTTCATTCCTCGACGCAAAAAGTTGATTGTTAAAAACCAGCACA-----------------------------------------------CTCAA-ATGGAGCA------------------AAA-AAA---------AATACG------------------------------GGCT----GACTCG-GAAAAGGT
droRho1	scf7180000761121:198683-198827 -			-------------------------------------------------------------------ACATCGACTTCTCGTGTTTGGCGTCTGAACTCAGATTCTTAA--CAGTT----------GTGTTAAATAAAATCTGTTCATTCCTCGACACAAGAAGTTGAC-GTTAAGA-CCAGCATA-----------------------------------------------CTCAA-CTGAAGAG------------------AAA-ACAA------------CG------------------------------AGCT----TTCTCG-AAATAGGT
droBia1	scf7180000302069:1157418-1157578 -			TG--------------------------------------------------------------TTAACGCCGACTTTAGGTGTTTGGTGGCTGAACTTGGATTTTTAA--CAGTT----------GAATGTAT-TAAATCTGTTCATTCCTCAACACAAAAAGTTGAC-GTTAAGGCCCAGCATAAAA------AACAGAGTG----------ATGAG-----------------------------------------------AC-----AAGG--------CAATAC-----------------------A--AA-TTTAGAATTTA-GAAAAGGT
droTak1	scf7180000415169:850691-850842 -			TAAT-----------------------------------------------------------TTTAACGTCGACTTTTCGTGTTTGGGGGCTGAACTCTGATTTTTAA--TAATT----------GAATTAAG-TAAATCTGTTCATTCCTCGACACAAGAAGTTGGC-GTAAAGTAACAGCGCA-----------------------------------------------TACAAAT-TGAGTG------------------ATA-ATAA-----------------------------------------------TTTGGAACTTC-GAATAGGT
droEug1	scf7180000409109:6800-6958 -			--------------------------------------------------------------------------CTTCTCGTGTTTGGTGACTGAACTTGGATTTTGAA--TATTT----------AAATAAAA-TAAATCTGTTCAATCCTCAACACGAGAAGTCGAC-GTAAATGACCAGCAAA-----------------------------------------------CATAAAT-AAGGTGATAGTGCTTA--------AAACTA-----AAACA----------------TA-ATAATTA----------AGAT----TAAGAA-TAATTGGA
dm3	chrX:19445559-19445724 +	dme-mir-973	Known_mirbase	TTAC-------------------------------------------------------------CGTCGTCGACTTTTCGTGGTTGGTGGTTGAACTTCGATTTTAAG--TATTT----------AAATAAAATGAAATCTGTTCATTCTCCGACACAAGAAGTTCAC-GCAAAGGAGCTGCAGCT--GCGAA---------------------------------------CATCAAA-TGCGTG------------------AATCCC-----AGGTCCAGGTA------------------------------AGCT----CAATTG-TCACCGGT
droSim2	x:18334929-18335073 +	dsi_170	confident	TT----------------------------------------------------------------AACGTATACTTTTCCGGGTTGGTGGTTGAACTTCGATTTTAAG--CATTT----------AAATAAGA-TAAATCTGTTCATTCTTCGACCCAAAAAGTTCAC-GTGAAGAAGCAGCGAA-----------------------------------------------CATCAAA-TGTGTG------------------AAT-G---------------TA------------------------------AACT----CAATTG-TCACTGGT
droSec2	scaffold_8:1727978-1728125 +	dse_159	candidate-rescued	TC----------------------------------------------------------------AACGTATACTTTTCGGGGTTGGTGGTTGAACTTCGATTTTAGG--TATTT----------AAATAAGA-TAAATCTGTTCATTCTTCGACCCAAAAAGTTCAC-GTGAAGAAGCAGCGAG-----------------------------------------------CATCAAA-TGAGTG------------------AAT-----CAGG--------TA------------------------------AACT----CGATTG-TCACTGGT
droEre2	scaffold_4690:9682250-9682465 +	der_78	confident	TTTATGTGTAATATTTTACACAGTACTTTCCTTAATCTATATAAATCAG-ACT---ATACCATTTTAACGTCGACTTTTCGTGGTTGGTGGCTGAACTTAGATTTTGAG--TATTC----------AAATAAAA-TAAATCTGTTCATTCCTCGACACAAGAAGTTGAC-GTGCAGGAGCGGCAAA-----------------------------------------------CATGAAT-CGAGTG------------------AAT-----CAGGAAAACAGAAC------------------------------CACT----AACTCA-GCACTGGG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

TTTTCGAGCAA--TTGAATCCAATACATACCTAAAAATATATC----GGGAAT---A--TTG--TCGACATGGCCTTTTCGTGTTTGGTGATTGAACTTGGATTTTGTT-CTATATACATATATAAAAA-TATG-TAAATCTGTTCATTCCTCGACACTAGAAGTTCAT-GTCAATAA-CTTCATT--------------------------------------TCCTGCACACAAGAAA---AGCG------------------AAT---------------------------------CATTC-------------------ATTTTT-CCAATGGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................................................TTTTCGTGTTTGGTGATTGAACT..................................................................................................................................................................................................................................................	23	1	64.00	64	33	0	30	0	1
...........................................................................TTTTCGTGTTTGGTGATTGAAC...................................................................................................................................................................................................................................................	22	1	30.00	30	1	0	29	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAG...................................................................................................................................................................................	22	1	23.00	23	23	0	0	0	0
...............................................................................................................................................TTCATTCCTCGACACTAGAAGT...............................................................................................................................................................................	22	1	20.00	20	0	0	20	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAGA..................................................................................................................................................................................	23	1	13.00	13	13	0	0	0	0
...........................................................................TTTTCGTGTTTGGTGATTGAA....................................................................................................................................................................................................................................................	21	1	9.00	9	3	0	6	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACT.....................................................................................................................................................................................	20	1	5.00	5	5	0	0	0	0
...........................................................................TTTTCGTGTTTGGTGATTGA.....................................................................................................................................................................................................................................................	20	1	5.00	5	0	0	5	0	0
............................................................................TTTCGTGTTTGGTGATTGAACT..................................................................................................................................................................................................................................................	22	1	2.00	2	1	0	1	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTA....................................................................................................................................................................................	21	1	2.00	2	1	0	1	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAGG..................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0
...............................................................................CGTGTTTGGTGATTGAACTTGGATT............................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	1	1
...........................................................................TTTTCGTGTTTGGTGATTGAACTT.................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAGC..................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
...............................................................................CGTGTTTGGTGATTGAACTTGGATC............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0
...............................................................................................................................................TTCATTCCTCGACACTAGAAGTT..............................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACAC......................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAGT..................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
...............................................................................................................................................TTCATTCCTCGACACTAGAAG................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0

droVir3

------------------------------------------------------------------GACATTCACTTTTCGTGTTCGATGTTTGAACTTGGATTTTTTT--TATAT---------------ACA-CAAATCTGTTCATTCCTCGACACTAGAAGTTTGC-GTCAATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
...........................................................................................................................................TCTGTTCATTCCTCGACACTAG...................................................................................................................................................................................	22	1	18038.00	18038	276	3	237	5	0	72	0	1	0	2	0	0	0	0	1	0	0	0	1	0	174	0	0	0	13	6	8	7	6206	3637	1525	5156	3	148	3	1	1	3	2	305	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	8	0	1	1	12	0	14	24	3	3	0	43	26	43	16	23	24	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACTAG...................................................................................................................................................................................	23	1	9342.00	9342	13	0	53	6	0	37	0	0	0	0	0	0	0	0	1	0	0	1	0	0	73	1	0	0	5	0	3	4	3430	1814	838	2833	0	63	0	2	1	0	0	101	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	7	0	4	2	0	1	0	18	8	12	1	3	4	0	1	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACT.....................................................................................................................................................................................	21	1	6136.00	6136	123	2	24	5	0	54	0	5	0	1	0	0	0	0	0	0	0	0	1	0	70	2	1	4	5	1	2	5	1716	1193	596	1722	1	99	1	0	0	0	0	190	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	17	1	0	0	9	0	0	5	7	1	1	82	54	40	24	43	21	2	0	1	1	1
...........................................................................................................................................TCTGTTCATTCCTCGACACT.....................................................................................................................................................................................	20	1	2777.00	2777	247	9	32	1	0	28	0	1	0	1	0	0	0	0	1	0	1	0	1	0	59	1	0	2	1	2	0	1	538	512	251	694	1	54	0	1	0	0	0	92	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	1	0	0	0	9	5	2	44	42	26	24	35	45	2	2	0	4	1
...........................................................................................................................................TCTGTTCATTCCTCGACACTA....................................................................................................................................................................................	21	1	2749.00	2749	24	1	36	1	1	21	0	1	0	0	0	0	0	0	3	0	0	0	0	0	25	0	0	1	2	1	1	0	849	540	299	799	0	18	0	0	0	0	0	67	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	2	0	0	4	2	8	0	13	2	7	0	6	5	0	0	1	1	2
..........................................................................................................................................ATCTGTTCATTCCTCGACACTA....................................................................................................................................................................................	22	1	1940.00	1940	1	0	15	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	2	0	18	0	0	0	0	0	0	1	684	396	191	551	0	20	0	0	2	1	0	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	0	1	6	8	0	0	3	1	0	1	0	1	0	0	1	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAGTC.................................................................................................................................................................................	24	1	954.00	954	48	0	0	0	1	22	0	0	0	1	0	0	0	0	0	0	0	0	0	0	63	0	0	0	0	0	0	0	204	165	63	239	0	49	0	0	0	0	0	85	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACAC......................................................................................................................................................................................	20	1	407.00	407	2	0	9	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	127	86	41	113	0	3	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	6	5	0	0	0	0	2	0	1	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAGT..................................................................................................................................................................................	23	1	328.00	328	3	0	0	0	0	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	19	0	0	0	0	0	1	0	92	72	15	74	0	18	0	0	0	0	0	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
............................................................................................................................................CTGTTCATTCCTCGACACTAG...................................................................................................................................................................................	21	1	285.00	285	0	0	27	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	84	66	14	85	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACA.......................................................................................................................................................................................	19	1	278.00	278	2	0	7	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	2	7	0	1	57	58	17	43	0	5	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	14	17	11	13	13	5	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACTAGTC.................................................................................................................................................................................	25	1	242.00	242	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	66	43	17	58	0	13	0	0	0	0	0	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAGA..................................................................................................................................................................................	23	1	163.00	163	52	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	23	16	5	26	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	5	9	8	3	7	2	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACTT....................................................................................................................................................................................	22	1	162.00	162	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	56	31	16	50	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CGTGTTCGATGTTTGAACTTGGATTT...........................................................................................................................................................................................................................................	26	1	137.00	137	0	0	1	0	0	7	0	2	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	47	22	12	35	0	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAGTCC................................................................................................................................................................................	25	1	130.00	130	59	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	11	11	7	22	0	4	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACTAGT..................................................................................................................................................................................	24	1	126.00	126	0	0	1	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	46	22	6	21	0	3	0	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CGTGTTCGATGTTTGAACTTGGATT............................................................................................................................................................................................................................................	25	1	109.00	109	0	0	0	0	0	15	1	5	0	3	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	24	9	8	15	0	8	0	0	0	0	1	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................CGTGTTCGATGTTTGAACTTGG...............................................................................................................................................................................................................................................	22	1	89.00	89	0	0	0	0	2	3	0	3	0	1	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	33	15	2	17	0	3	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACAC......................................................................................................................................................................................	19	1	82.00	82	7	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22	14	7	13	0	3	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	5	0	0	0	0	1	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACTC....................................................................................................................................................................................	22	1	74.00	74	0	0	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	17	7	12	22	0	3	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0
.............................................................................................................................................TGTTCATTCCTCGACACTAG...................................................................................................................................................................................	20	1	69.00	69	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	22	12	8	26	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAGTCT................................................................................................................................................................................	25	1	60.00	60	15	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	16	9	3	5	0	2	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CGTGTTCGATGTTTGAACTTGGA..............................................................................................................................................................................................................................................	23	1	52.00	52	0	0	0	0	0	5	0	1	0	1	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	1	0	0	9	10	4	8	0	3	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACTAT...................................................................................................................................................................................	23	1	47.00	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	5	8	19	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CGTGTTCGATGTTTGAACTTGGAT.............................................................................................................................................................................................................................................	24	1	45.00	45	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	7	9	5	9	0	3	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACC.....................................................................................................................................................................................	20	1	43.00	43	38	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACA.......................................................................................................................................................................................	18	1	41.00	41	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	5	12	6	9	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACTAGA..................................................................................................................................................................................	24	1	38.00	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	10	4	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTC....................................................................................................................................................................................	21	1	36.00	36	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	5	8	3	4	0	3	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAT...................................................................................................................................................................................	22	1	35.00	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	15	5	3	9	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CTGTTCATTCCTCGACACTA....................................................................................................................................................................................	20	1	32.00	32	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	7	2	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CTGTTCATTCCTCGACACT.....................................................................................................................................................................................	19	1	32.00	32	1	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	4	3	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACC.....................................................................................................................................................................................	21	1	30.00	30	10	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	2	5	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	3	0	0	0	0	0	0
...............................................................................CGTGTTCGATGTTTGAACTTGGATTTC..........................................................................................................................................................................................................................................	27	1	29.00	29	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	10	3	4	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CGTGTTCGATGTTTGAACTTGGATC............................................................................................................................................................................................................................................	25	1	25.00	25	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	3	4	7	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACTAA...................................................................................................................................................................................	23	1	24.00	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	5	2	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAGTT.................................................................................................................................................................................	24	1	22.00	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	3	4	9	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAA...................................................................................................................................................................................	22	1	22.00	22	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	5	5	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	1
.............................................................................................................................................TGTTCATTCCTCGACACT.....................................................................................................................................................................................	18	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	6	2	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CGTGTTCGATGTTTGAACTTG................................................................................................................................................................................................................................................	21	1	16.00	16	0	0	0	0	0	1	0	2	0	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	3	4	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGAC........................................................................................................................................................................................	18	1	16.00	16	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	3	1	1	1	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACTAGTCC................................................................................................................................................................................	26	1	15.00	15	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACTTT...................................................................................................................................................................................	23	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	3	2	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTT....................................................................................................................................................................................	21	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	2	2	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTTCATTCCTCGACACTAG...................................................................................................................................................................................	19	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	6	2	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAGG..................................................................................................................................................................................	23	1	13.00	13	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CGTGTTCGATGTTTGAACTTGGATTTCC.........................................................................................................................................................................................................................................	28	1	12.00	12	1	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	4	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TGTTCATTCCTCGACACTA....................................................................................................................................................................................	19	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	3	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACG.....................................................................................................................................................................................	20	1	11.00	11	10	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACC.......................................................................................................................................................................................	19	1	10.00	10	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	1	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTCATTCCTCGACACTAG...................................................................................................................................................................................	18	1	10.00	10	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	1	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CTGTTCATTCCTCGACACTAGTC.................................................................................................................................................................................	23	1	10.00	10	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	1	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAGTCA................................................................................................................................................................................	25	1	9.00	9	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACTAC...................................................................................................................................................................................	23	1	9.00	9	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACT.......................................................................................................................................................................................	19	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	3	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACTAGTCT................................................................................................................................................................................	26	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	1	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACA.....................................................................................................................................................................................	21	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAGTTC................................................................................................................................................................................	25	1	7.00	7	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAGC..................................................................................................................................................................................	23	1	6.00	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACTAGTTC................................................................................................................................................................................	26	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAGCC.................................................................................................................................................................................	24	1	5.00	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACAA......................................................................................................................................................................................	20	1	5.00	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................TGTTCATTCCTCGACACTAGTC.................................................................................................................................................................................	22	1	5.00	5	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACTAGTT.................................................................................................................................................................................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACAAA.....................................................................................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0
...............................................................................CGTGTTCGATGTTTGAACTTGGATTC...........................................................................................................................................................................................................................................	26	1	5.00	5	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAC...................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACTAG.....................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACTTC...................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAGAA.................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	1
..........................................................................................................................................ATCTGTTCATTCCTCGACACTCT...................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CGTGTTCGATGTTTGAACT..................................................................................................................................................................................................................................................	19	1	4.00	4	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CTGTTCATTCCTCGACACTAGT..................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAGAAA................................................................................................................................................................................	25	1	4.00	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTG....................................................................................................................................................................................	21	1	3.00	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACA.....................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACTATC..................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTTCATTCCTCGACACTAGTC.................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CGTGTTCGATGTTTGAACTT.................................................................................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACC.......................................................................................................................................................................................	18	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACTCC...................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAGATC................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACTATTC.................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CGTGTTCGATGTTTGAAC...................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACG.....................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CGTGTTCGATGTTTGAACTTGGATTTA..........................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAGACT................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAGCT.................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CTGTTCATTCCTCGACACTAGA..................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACTAGCT.................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACTAG.....................................................................................................................................................................................	20	5	1.40	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACTTTT..................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CTGTTCATTCCTCGACACTAA...................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACTAGAC.................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

--------------------------------------------------------------------------CTTTTCGTGTTCGATGTTTGAACTTGGATTTTTAA--AATAT----------GA---AAA-GAAATCTGTTCATTCCTCGACACTAAGAGTTTAG-GTCTATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................TCTGTTCATTCCTCGACACTA....................................................................................................................................................................................	21	1	48.00	48	33	0	0	0	1	14
...........................................................................................................................................TCTGTTCATTCCTCGACACTAA...................................................................................................................................................................................	22	1	27.00	27	23	0	0	0	0	4
...........................................................................................................................................TCTGTTCATTCCTCGACACT.....................................................................................................................................................................................	20	1	17.00	17	11	0	1	0	0	5
...........................................................................................................................................TCTGTTCATTCCTCGACACTAT...................................................................................................................................................................................	22	1	8.00	8	4	0	0	0	1	3
..........................................................................................................................................ATCTGTTCATTCCTCGACACT.....................................................................................................................................................................................	21	1	6.00	6	3	0	0	0	1	2
..........................................................................................................................................ATCTGTTCATTCCTCGACACTAA...................................................................................................................................................................................	23	1	6.00	6	4	0	1	0	1	0
...............................................................................CGTGTTCGATGTTTGAACTTGGATTT...........................................................................................................................................................................................................................................	26	1	5.00	5	1	0	0	0	0	4
...............................................................................CGTGTTCGATGTTTGAACTTGGATT............................................................................................................................................................................................................................................	25	1	5.00	5	1	0	0	0	1	3
..........................................................................................................................................ATCTGTTCATTCCTCGACACTA....................................................................................................................................................................................	22	1	5.00	5	3	0	0	0	1	1
...............................................................................CGTGTTCGATGTTTGAACTTGGATC............................................................................................................................................................................................................................................	25	1	3.00	3	1	0	0	0	0	2
...........................................................................................................................................TCTGTTCATTCCTCGACACTAAT..................................................................................................................................................................................	23	1	3.00	3	1	0	1	0	0	1
............................................................................................................................................CTGTTCATTCCTCGACACT.....................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................CTGTTCATTCCTCGACACTA....................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTT....................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACA.......................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...............................................................................CGTGTTCGATGTTTGAACTTGGATTTTC.........................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
...............................................................................CGTGTTCGATGTTTGAACTTGGATTTC..........................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................ATCTGTTCATTCCTCGACAC......................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................CTGTTCATTCCTCGACACTAA...................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACC.....................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................GTTCATTCCTCGACACTA....................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTC....................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...............................................................................CGTGTTCGATGTTTGAACTTGGATTTCCC........................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................TCTGTTCATTCCTCGACACTACC..................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................CTGTTCATTCCTCGACACTATC..................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...............................................................................CGTGTTCGATGTTTGAACTTGGATTC...........................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1

droAna3

AATA-------------------------------------------------------TTGAAATGACACCGACTCCTCGTGTTTGGCGATTGAACCTGGATTTTTAA--TTTTC----------GAGTACGA-GAAATCTGTTCATTCCTCGACACTAGTAGTTGGC-GCGACAC-TCAGCGCACCA------AAC---------ATGAACCGCGGCTCAAATC------------------------------------------------------------AATCCAATCCGAATCCAATCGCGGTTGCAAT-CCT----GGCTTG-GGGTAGGT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................TCTGTTCATTCCTCGACACTAG...................................................................................................................................................................................	22	1	70.00	70	57	0	0	2	9	2
............................................................................................................................................CTGTTCATTCCTCGACACTAG...................................................................................................................................................................................	21	1	8.00	8	7	0	0	1	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTA....................................................................................................................................................................................	21	1	8.00	8	4	0	0	0	4	0
...........................................................................................................................................TCTGTTCATTCCTCGACACTAGT..................................................................................................................................................................................	23	1	6.00	6	0	0	0	0	4	2
...............................................................................CGTGTTTGGCGATTGAACCTGG...............................................................................................................................................................................................................................................	22	1	5.00	5	0	0	0	0	5	0
...............................................................................CGTGTTTGGCGATTGAACCTGGATT............................................................................................................................................................................................................................................	25	1	2.00	2	1	0	0	1	0	0
...............................................................................CGTGTTTGGCGATTGAACCTGGAT.............................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	2	0
...........................................................................................................................................TCTGTTCATTCCTCGACACT.....................................................................................................................................................................................	20	1	2.00	2	1	0	0	0	0	1
...............................................................................CGTGTTTGGCGATTGAACCTGGAA.............................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
...............................................................................CGTGTTTGGCGATTGAACCTG................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.................................................................................TGTTTGGCGATTGAACCTGGATT............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................CTGTTCATTCCTCGACACTAGT..................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
...............................................................................CGTGTTTGGCGATTGAACCTGGT..............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................GTTCATTCCTCGACACTAG...................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................TGTTCATTCCTCGACACTAG...................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.................................................................................TGTTTGGCGATTGAACCTGGA..............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0

droBip1

--------------------------------------------------------------------------CTTCTCGTGTTAGGCGATTGAACCTGGATTT-AAA--TTTTC----------GAGTACGA-GAAATCTGTTCAATCCTCGACACTAGCAGTTGGC-GCGACCGA-CTGCGCAT--AAAAAC------------ATTATTCGCGCCTCATATC--------------------------------------------------------------------CCGAA-CCAATCGCGGTTGCAAT-CCTTGGGTGGATTGGGGTAGGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

---------------------------------------------------------------------ATTGACTTTTCGTGCTTGGCGATTGAAGGTGGATTTGTGA--TTTTT----------AAG-CAAT-TAAATCTGTTCAATCGTCAACACTAAAAGTTGAT-GTTATTTAGCTTCGAA-----------------------------------------------CCCCAAG-GAT-----CCTGCCTAGAACGGTGAGT-ATAGCCGG--------GA------------------------------CATC----TCCGCC-AAGCTGGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

------------------------------------------------------------------GACATTGACATCTCGTGTTTGGCGAATGAGCTCGGATTTTTGTAGTATTT----------GAATAAGA-TAAATCTGTTCATTCCTCGACACAAGAAGTTGAA-GTTGATAATCAACTAA---------AACAAAGTGCTAAGGATA--------------------CGCA-----------------------------------------------------------------------------------ATTAAAAACAA-AAAAGGAG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATAC--------------------------------------AACTTAG-AATTATTTAATAGTATGACATCGACTTTTTGTGTTTGGCGGATGAACTTAGATTTTTCT--TATTT----------GTA-AAAA-CAAATCTGTTCATTCCTCGACGCAAAAAGTTGATTGTTAAAAACCAGCACA-----------------------------------------------CTCAA-ATGGAGCA------------------AAA-AAA---------AATACG------------------------------GGCT----GACTCG-GAAAAGGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

-------------------------------------------------------------------ACATCGACTTCTCGTGTTTGGCGTCTGAACTCAGATTCTTAA--CAGTT----------GTGTTAAATAAAATCTGTTCATTCCTCGACACAAGAAGTTGAC-GTTAAGA-CCAGCATA-----------------------------------------------CTCAA-CTGAAGAG------------------AAA-ACAA------------CG------------------------------AGCT----TTCTCG-AAATAGGT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TG--------------------------------------------------------------TTAACGCCGACTTTAGGTGTTTGGTGGCTGAACTTGGATTTTTAA--CAGTT----------GAATGTAT-TAAATCTGTTCATTCCTCAACACAAAAAGTTGAC-GTTAAGGCCCAGCATAAAA------AACAGAGTG----------ATGAG-----------------------------------------------AC-----AAGG--------CAATAC-----------------------A--AA-TTTAGAATTTA-GAAAAGGT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TAAT-----------------------------------------------------------TTTAACGTCGACTTTTCGTGTTTGGGGGCTGAACTCTGATTTTTAA--TAATT----------GAATTAAG-TAAATCTGTTCATTCCTCGACACAAGAAGTTGGC-GTAAAGTAACAGCGCA-----------------------------------------------TACAAAT-TGAGTG------------------ATA-ATAA-----------------------------------------------TTTGGAACTTC-GAATAGGT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

--------------------------------------------------------------------------CTTCTCGTGTTTGGTGACTGAACTTGGATTTTGAA--TATTT----------AAATAAAA-TAAATCTGTTCAATCCTCAACACGAGAAGTCGAC-GTAAATGACCAGCAAA-----------------------------------------------CATAAAT-AAGGTGATAGTGCTTA--------AAACTA-----AAACA----------------TA-ATAATTA----------AGAT----TAAGAA-TAATTGGA	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTAC-------------------------------------------------------------CGTCGTCGACTTTTCGTGGTTGGTGGTTGAACTTCGATTTTAAG--TATTT----------AAATAAAATGAAATCTGTTCATTCTCCGACACAAGAAGTTCAC-GCAAAGGAGCTGCAGCT--GCGAA---------------------------------------CATCAAA-TGCGTG------------------AATCCC-----AGGTCCAGGTA------------------------------AGCT----CAATTG-TCACCGGT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................................................................................TGGTTGGTGGTTGAACTTCGA..............................................................................................................................................................................................................................................	21	1	26299.00	26299	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	6	2	0	2	0	0	21	2	0	47	2	2	1	3	7	8	0	0	2	8	4	2	0	26	1	1	0	10	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	3	2	0	0	0	0	0	0	0	0	0	0	0	0	1	150	0	472	0	0	0	0	133	0	497	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	9	1	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	15	0	0	20	0	2	7	1	0	1	0	0	0	0	0	0	11	0	593	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	2	0	0	0	1	11	0	3	0	0	1	0	0	41	1	85	104	0	0	0	4	0	3	8	16733	6	0	1	0	7	0	178	1	31	1	100	1	4	2	0	0	5	6817	1	23	0
.................................................................................TGGTTGGTGGTTGAACTTCG...............................................................................................................................................................................................................................................	20	1	10374.00	10374	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	3	0	0	7	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	184	0	455	0	0	0	0	114	0	392	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	5	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	6	0	0	0	0	0	1	0	0	0	0	0	0	9	0	502	1	0	0	0	0	1	0	2	0	0	0	0	0	0	0	9	0	0	1	1	2	1	11	0	1	9	0	1	0	0	0	0	0	52	0	120	110	0	0	0	1	1	3	0	6828	2	0	1	0	1	0	67	0	21	9	72	1	24	15	4	1	2	1294	1	10	0
.................................................................................TGGTTGGTGGTTGAACTTCGAT.............................................................................................................................................................................................................................................	22	1	6869.00	6869	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	11	0	0	24	0	0	3	0	0	1	0	0	0	0	2	2	0	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34	2	140	0	0	0	0	23	0	108	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	4	0	0	1	0	1	0	0	0	0	0	0	0	4	0	172	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	1	4	0	1	0	0	0	0	0	4	0	18	6	0	0	0	2	0	4	3	4288	3	0	0	0	1	0	50	0	0	0	27	0	0	0	0	0	4	1833	1	23	0
.................................................................................TGGTTGGTGGTTGAACTTCGATT............................................................................................................................................................................................................................................	23	1	4683.00	4683	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	18	0	0	10	0	0	0	0	0	0	0	0	0	0	1	0	0	16	0	1	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	34	0	59	0	0	0	0	16	0	72	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	3	0	0	1	0	1	0	0	0	0	0	0	0	3	0	74	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	4	0	1	0	0	0	0	0	2	0	8	9	0	0	0	0	0	0	0	2739	2	0	0	0	1	0	39	0	1	0	13	0	0	0	0	0	3	1526	0	6	0
.................................................................................TGGTTGGTGGTTGAACTTCGATTTT..........................................................................................................................................................................................................................................	25	1	4653.00	4653	0	0	0	0	0	0	0	1	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	14	3	1	0	1	0	0	7	1	1	107	1	1	19	1	0	0	3	0	0	2	0	3	0	1	4	0	76	4	3	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46	0	80	0	0	0	0	9	0	87	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	2	4	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	5	0	1	1	0	0	0	0	0	0	0	0	0	1	1	64	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	3	0	8	8	0	0	0	1	0	0	0	2982	2	0	0	0	0	0	21	0	0	0	14	0	0	0	0	0	1	1000	0	8	0
.................................................................................TGGTTGGTGGTTGAACTTCGATTT...........................................................................................................................................................................................................................................	24	1	2079.00	2079	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	1	24	0	0	14	0	0	0	2	0	1	0	0	0	0	2	0	0	21	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21	0	42	0	0	0	0	2	0	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	2	0	5	3	0	0	0	0	0	0	0	1288	4	0	0	0	0	0	17	0	1	0	12	1	0	0	0	0	0	520	0	6	0
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...............................................................................CGTGGTTGGTGGTTGAACTTCGATT............................................................................................................................................................................................................................................	25	1	277.00	277	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	237	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	23	0	1	0
.................................................................................TGGTTGGTGGTTGAACTTCGT..............................................................................................................................................................................................................................................	21	1	234.00	234	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	2	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	106	0	0	0	0	0	0	2	0	1	0	2	0	1	0	0	0	0	98	0	0	0
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................................................................................GTGGTTGGTGGTTGAACTTCGAT.............................................................................................................................................................................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................CGTGGTTGGTGGTTGAACTTCGAT.............................................................................................................................................................................................................................................	24	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................CGTGGTTGGTGGTTGAACTTCG...............................................................................................................................................................................................................................................	22	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................TGGTTGGTGGTTGAACTTCGAAA............................................................................................................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
.................................................................................TGGTTGGTGGTTGAACTTCGATTTA..........................................................................................................................................................................................................................................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
....................................................................................TTGGTGGTTGAACTTCGATTTT..........................................................................................................................................................................................................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................GGTTGGTGGTTGAACTTCGATTTT..........................................................................................................................................................................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................TGGTTGGTGGTTGAACTTCGATTTTTT........................................................................................................................................................................................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
.................................................................................TGGTTGGTGGTTGAACTT.................................................................................................................................................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
...................................................................................GTTGGTGGTTGAACTTCGAT.............................................................................................................................................................................................................................................	20	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TT----------------------------------------------------------------AACGTATACTTTTCCGGGTTGGTGGTTGAACTTCGATTTTAAG--CATTT----------AAATAAGA-TAAATCTGTTCATTCTTCGACCCAAAAAGTTCAC-GTGAAGAAGCAGCGAA-----------------------------------------------CATCAAA-TGTGTG------------------AAT-G---------------TA------------------------------AACT----CAATTG-TCACTGGT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................TCTGTTCATTCTTCGACCCAA....................................................................................................................................................................................	21	1	910.00	910	7	200	0	0	678	8	0	2	1	2	0	0	0	12	0	0	0
...........................................................................................................................................TCTGTTCATTCTTCGACCCAAA...................................................................................................................................................................................	22	1	484.00	484	3	272	1	0	182	1	4	0	1	3	0	0	0	17	0	0	0
..........................................................................................................................................ATCTGTTCATTCTTCGACCCA.....................................................................................................................................................................................	21	1	419.00	419	0	15	0	1	281	4	0	0	0	0	1	0	0	117	0	0	0
..........................................................................................................................................ATCTGTTCATTCTTCGACCCAA....................................................................................................................................................................................	22	1	360.00	360	0	7	0	0	258	6	0	0	1	1	0	0	0	87	0	0	0
...........................................................................................................................................TCTGTTCATTCTTCGACCC......................................................................................................................................................................................	19	1	223.00	223	1	9	0	0	208	5	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCTTCGACCCA.....................................................................................................................................................................................	20	1	216.00	216	17	66	0	0	132	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AATCTGTTCATTCTTCGACCCA.....................................................................................................................................................................................	22	1	140.00	140	0	12	0	0	45	0	1	1	1	0	0	0	0	80	0	0	0
..........................................................................................................................................ATCTGTTCATTCTTCGACCCAAA...................................................................................................................................................................................	23	1	128.00	128	0	5	0	0	88	1	1	0	0	0	0	0	0	33	0	0	0
..........................................................................................................................................ATCTGTTCATTCTTCGACCC......................................................................................................................................................................................	20	1	111.00	111	0	3	0	0	102	3	0	0	0	0	0	0	0	3	0	0	0
...........................................................................................................................................TCTGTTCATTCTTCGACC.......................................................................................................................................................................................	18	1	44.00	44	3	6	0	0	35	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCTTCGACC.......................................................................................................................................................................................	19	1	33.00	33	1	2	0	0	30	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AATCTGTTCATTCTTCGACCC......................................................................................................................................................................................	21	1	28.00	28	1	11	0	0	12	0	0	0	0	0	0	0	0	4	0	0	0
...........................................................................................................................................TCTGTTCATTCTTCGACCCAAAA..................................................................................................................................................................................	23	1	27.00	27	0	12	0	0	14	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................AATCTGTTCATTCTTCGACCCAA....................................................................................................................................................................................	23	1	11.00	11	0	2	0	0	4	0	0	0	0	0	0	0	0	5	0	0	0
.........................................................................................................................................AATCTGTTCATTCTTCGACC.......................................................................................................................................................................................	20	1	10.00	10	0	1	0	0	6	0	0	0	0	0	0	0	0	3	0	0	0
..........................................................................................................................................ATCTGTTCATTCTTCGAC........................................................................................................................................................................................	18	1	9.00	9	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CCGGGTTGGTGGTTGAACTTCGATTT...........................................................................................................................................................................................................................................	26	1	7.00	7	0	0	0	0	6	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................CTGTTCATTCTTCGACCCAA....................................................................................................................................................................................	20	1	7.00	7	0	1	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCTTCGACCCAT....................................................................................................................................................................................	22	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0
...............................................................................CCGGGTTGGTGGTTGAACTTCGAT.............................................................................................................................................................................................................................................	24	1	6.00	6	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CTGTTCATTCTTCGACCCA.....................................................................................................................................................................................	19	1	6.00	6	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AATCTGTTCATTCTTCGACCCT.....................................................................................................................................................................................	22	1	5.00	5	0	2	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................AATCTGTTCATTCTTCGAC........................................................................................................................................................................................	19	1	5.00	5	0	2	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................ATCTGTTCATTCTTCGACCCAC....................................................................................................................................................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0
...........................................................................................................................................TCTGTTCATTCTTCGACCCAG....................................................................................................................................................................................	21	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CCGGGTTGGTGGTTGAACTTC................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	3	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................ATCTGTTCATTCTTCGACCCAAAA..................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCTTCGACCCG.....................................................................................................................................................................................	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CCGGGTTGGTGGTTGAACTTCG...............................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................TAAG--CATTT----------AAATAAGA-TAA..........................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCTTCGACCCAAT...................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................CTGTTCATTCTTCGACCCAAA...................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCTTCGACCCACC...................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AATCTGTTCATTCTTCGA.........................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCTTCGACCCT.....................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CCGGGTTGGTGGTTGAACTTCGATT............................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................CTGTTCATTCTTCGACCC......................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TTCATTCTTCGACCCAAA...................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................GGGTTGGTGGTTGAACTTCGATT............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................ATCTGTTCATTCTTCGACCCT.....................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................CCGGGTTGGTGGTTGAAC...................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................TCCGGGTTGGTGGTTGAACTTCGAT.............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCTTCGAC........................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................TCTGTTCATTCTTCGACCCAAG...................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................TCTGTTCATTCTTCGACCCAC....................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AATCTGTTCATTCTTCGACCCAT....................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................GTTCATTCTTCGACCCAA....................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AATCTGTTCATTCTTCGACCCAAA...................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................TCTGTTCATTCTTCGACCCATTT..................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TC----------------------------------------------------------------AACGTATACTTTTCGGGGTTGGTGGTTGAACTTCGATTTTAGG--TATTT----------AAATAAGA-TAAATCTGTTCATTCTTCGACCCAAAAAGTTCAC-GTGAAGAAGCAGCGAG-----------------------------------------------CATCAAA-TGAGTG------------------AAT-----CAGG--------TA------------------------------AACT----CGATTG-TCACTGGT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........................................................................................................................................ATCTGTTCATTCTTCGACCCA.....................................................................................................................................................................................	21	1	6.00	6	4	1	1	0
..........................................................................................................................................ATCTGTTCATTCTTCGACCCAA....................................................................................................................................................................................	22	1	6.00	6	0	3	1	2
...........................................................................................................................................TCTGTTCATTCTTCGACCCAA....................................................................................................................................................................................	21	1	3.00	3	0	2	1	0
..........................................................................................................................................ATCTGTTCATTCTTCGACCCAAA...................................................................................................................................................................................	23	1	2.00	2	1	1	0	0
...........................................................................................................................................TCTGTTCATTCTTCGACCCAAA...................................................................................................................................................................................	22	1	2.00	2	1	0	1	0
...........................................................................................................................................TCTGTTCATTCTTCGACCC......................................................................................................................................................................................	19	1	2.00	2	2	0	0	0
..........................................................................................................................................ATCTGTTCATTCTTCGACCCAC....................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
................................................................................GGGGTTGGTGGTTGAACTTCGA..............................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
...............................................................................CGGGGTTGGTGGTTGAACTTCGATT............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
................................................................................GGGGTTGGTGGTTGAACTTCG...............................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
...............................................................................................................................................TTCATTCTTCGACCCAAAAAGT...............................................................................................................................................................................	22	1	1.00	1	0	1	0	0

droEre2

TTTATGTGTAATATTTTACACAGTACTTTCCTTAATCTATATAAATCAG-ACT---ATACCATTTTAACGTCGACTTTTCGTGGTTGGTGGCTGAACTTAGATTTTGAG--TATTC----------AAATAAAA-TAAATCTGTTCATTCCTCGACACAAGAAGTTGAC-GTGCAGGAGCGGCAAA-----------------------------------------------CATGAAT-CGAGTG------------------AAT-----CAGGAAAACAGAAC------------------------------CACT----AACTCA-GCACTGGG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................................................................................TCTGTTCATTCCTCGACACAAGT..................................................................................................................................................................................	23	1	50.00	50	1	0	1	0	43	5	0
...........................................................................................................................................TCTGTTCATTCCTCGACACAAG...................................................................................................................................................................................	22	1	34.00	34	16	0	1	0	13	4	0
...........................................................................................................................................TCTGTTCATTCCTCGACACAA....................................................................................................................................................................................	21	1	13.00	13	5	0	0	0	6	2	0
...........................................................................................................................................TCTGTTCATTCCTCGACACA.....................................................................................................................................................................................	20	1	5.00	5	0	0	1	0	3	1	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACAAG...................................................................................................................................................................................	23	1	3.00	3	2	1	0	0	0	0	0
...............................................................................CGTGGTTGGTGGCTGAACTTAG...............................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	2	0	0
..........................................................................................................................................ATCTGTTCATTCCTCGACACAAGT..................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	2	0	0
...........................................................................................................................................TCTGTTCATTCCTCGACACAAGC..................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...............................................................................CGTGGTTGGTGGCTGAACTTAGA..............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
...............................................................................CGTGGTTGGTGGCTGAACTTAGATT............................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
...............................................................................CGTGGTTGGTGGCTGAACTTAGAT.............................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0

dwi_138

scf2_1100000004909:7946468-7946577 +

Known Ortholog

Testes-restricted

5pUTR

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-32.6	-32.4	-32.2