dwi_1355

Name	Class	Family	Strand
TART_DV	LINE	Jockey	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TTGGATTCTTTTGTTCAGCCATCAGGCTGAAGAGCTCTGCCAGATTTTGTGTGCTTTTTTTTTTCTTCTCTCTATTTTACCAGTGGGCAGAATTGTTTCGTAATTGTAAAATATGTTGTCATGTTGTAAGCATTGTTATTGCTGTTGCTGTTGCTGTTGTTGCTGATGCTGCTGTTAGCATTGCAATGCCACAAATGTGTGTACAGTTAGCTGCGGGGCAATCTGTTCTCTGTGGGAAGGCTCACACACAC ************************************************......................((((((((.(((..((.(((....))))).)))))))))))......((((((....(((((((...(((((..((.((....((....))....)).))...)))))..)))))))....))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V118 embryo	M020 head	V117 male body	V119 head
....................ATCGGGCTGAAGAACTCTGCCA.................................................................................................................................................................................................................	22	2	1	1.00	1	1	0	0	0	0
.TGGATTGTTTTGTTTAGCC.......................................................................................................................................................................................................................................	19	2	16	1.00	16	1	15	0	0	0
.TGGATTGTTTTGTTTAGCCA......................................................................................................................................................................................................................................	20	2	11	1.00	11	6	3	0	1	1
.TGGATTGTTTTGTTTAGCCATC....................................................................................................................................................................................................................................	22	2	2	0.50	1	0	1	0	0	0
...............................................................................CCCGTGGGCAGTATTGTTGC........................................................................................................................................................	20	3	4	0.25	1	0	0	1	0	0
..GGATTGTTTTGTTTAGCCA......................................................................................................................................................................................................................................	19	2	15	0.20	3	2	1	0	0	0
......................................................................................................................................................................................................................................TGTGGGAAGGCTTAGACA...	18	2	6	0.17	1	1	0	0	0	0
..GGATTGTTTTGTTTAGCC.......................................................................................................................................................................................................................................	18	2	20	0.15	3	0	0	3	0	0
.........................................................................................................................................................................................ATGCCACAAACGCGTGAACA..............................................	20	3	19	0.05	1	1	0	0	0	0
............................................................................................................................................GCTGTTGCTGTTGCTGTTGTGGC........................................................................................	23	1	19	0.05	1	1	0	0	0	0

AACCTAAGAAAACAAGTCGGTAGTCCGACTTCTCGAGACGGTCTAAAACACACGAAAAAAAAAAGAAGAGAGATAAAATGGTCACCCGTCTTAACAAAGCATTAACATTTTATACAACAGTACAACATTCGTAACAATAACGACAACGACAACGACAACAACGACTACGACGACAATCGTAACGTTACGGTGTTTACACACATGTCAATCGACGCCCCGTTAGACAAGAGACACCCTTCCGAGTGTGTGTG ************************************************......................((((((((.(((..((.(((....))))).)))))))))))......((((((....(((((((...(((((..((.((....((....))....)).))...)))))..)))))))....))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V118 embryo	V117 male body	M045 female body	V119 head
...........................................................................................................................................................CAACAACGACTACGACGACA............................................................................	20	0	8	0.13	1	0	1	0	0
......................................................................................................................................................................AGGACGACTATCCTAACGTTA................................................................	21	3	8	0.13	1	1	0	0	0
...........................................................................................................................................ACGACAAGGACAACGACAACAACGAC......................................................................................	26	1	13	0.08	1	1	0	0	0
...........................................................AAAGAGAAGAGAGATAAA..............................................................................................................................................................................	18	1	15	0.07	1	1	0	0	0
................................................................................................................................................................................................................TCGACCGCCCGGTAGACAA........................	19	3	19	0.05	1	0	0	1	0
...........................................................................................................................................ACGACAACGACAACGACAACA...........................................................................................	21	0	20	0.05	1	1	0	0	0
..........................................................................................................................................................ACAACAACGACTACGACGAC.............................................................................	20	0	20	0.05	1	0	0	0	1
....................................................................................................................................................ACAACGACAACAACGACTA....................................................................................	19	0	20	0.05	1	0	0	1	0

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004521:11144251-11144501 -	dwi_1355	TTGGATTCTTTTGTTCAGCCATCAGGCTGAAGAGCTCTG----------------------------------CCAG---------ATTTTGTGTGC---------------------------------------------------------------------TTTTTTTTTTCT--TCTC-------------------------------------------------------------T-------------CTAT----------------------------------------------------------TTTACCAG----------------------------T----------------------------------GGGC--AGAATTGT----TTCGTAATTGTAAAATATGTTGTCATGTTGTAAGCATTGTTATTGCTGTT--------------------------------------GCTGTTG---------CTGTTGTTGCTGATGCTGC---TGTTAGCA------------------------------------------------------------------------------------------------------------TTGCAATGCCACAAATGTGTGTACAGTTAGCTGCG-GGG---------CAATCTG--TTCTCTGTGG----GAAGGCTCAC--------ACAC-AC
droVir3	scaffold_13049:17454981-17455182 -		TTTG--------------------------------TTTG-------------------------------------------T---T--------TTT--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------ATTGTTGTTGTTGTTGTTGTTGTTGTTGCC------------ATTGTCGTTGTCATTTTG---AATG--CGAATTGTCGTCGTTGTCGTTGTCATCCATGTTCTTGTTGGT----------------------------------------------------------GTTGTTGTTG------TTGTTGCTGTTGCTG---CTGCTTTC----------------------TGAATACGCAAAATGTGTAAT------------------------------------------------------------------------------------------GGCATTTCGTCAGG-CGGAGCATGAAAATGC----------GACA-------------------------AC-AC
droMoj3	scaffold_6540:14608787-14608992 -		AGCT--------------------------------CTGCG---------------------------------------------ATTTAGTGTGC---------------------------------------------------------------------TCA---------------------------------------------------------------------------------------------------TAAAATATTTGTGTTACAGATTAGTAAAATAGACA-----ATTTT----------------GTTGCTGTTGTTGTTGTTGTT---------------GCTGCTGCTGTTGCTGTTG------------------------------C--------------------------------------------T--------------------------------GTTGCTGTTGCTGTTGTTGTTGCT---------GTTGCTGT---TG-------------------CTAC-TA-------------------------------------------------------------------------------------------GTGAGCCATTA-----ATTAAAGTTT--------------------TCAGAGATTCCAGTGCAC--AT--ATG--TACGTATCCACAGT-AAC
droGri2	scaffold_15252:11224105-11224398 +		ATGT--------------------------------TTTTG---------------------------------------------TT--------TTTCTTT-------------T------------------------------------------------------------------------------------------------------------------------------------------------------GAGCTG--------------------------------------CAG--CCGCATTTAAGTTGTTGTTG---TTG------------TTGCTGTT---GTTGTTGCTGTTGTTGTAGT-------TGGC--TG--------------------------------------CTG-----------------TTGTGAGAATTTGCCGTAAATCAACCTGTTGCATGTTGGTGTTGCTGTTGTTGTTGTT------------------------GTTGTTGCCGCACACAGTTTTCGGCATCAGCCACTTGGCTTATGAAGTGCCACAGAGAGAAACAGGTTAATCGATTTTAAATCGGTTTTGATGTTGTTTTGATCGCTGCCCCTTACAACTAAATACATGTGTGTACACACACAC-AC-AC----------------------------------------------------------
dp5	4_group3:4729966-4730205 +		CTGC--------------------------------TGCCG--------------------------------CTGAA-TTTTTACCA------GTTTATTTC-------------T------------------AT-------CTTTTTT-------------CC------------CTT------------TCCTGGTGCTCCATTGTTCATT--------GCTGAAGAGCTGCCG-CGATGCC---------------------------------------------------------TGAGG---TTTTGCTGCATTTAGTTG----------------------------T----------------------------------GGGC--AGAATTGT----TTCGTAATTGTAAAATATGTTGTTATGCTTTAAC--TTGTTGCTG--------------------------------------------------------------C---------------------------------------------------------------------------------------------------------------------------------------TGCGATGCGACAAATGTGTGTACAGTTAGCTGGG-GGC---------ACATAGG--ATATCTGCGAATGA--ATG--CACAT------GC----A
droPer2	scaffold_10531:480-708 -		TTGC--------------------------------CAAT-------------------------------------------T------------------------------------------------------------------------------------------------------------ATCG---------------CTGGCAA-T-----------GCCGCAGACGATGCCGATGGCGATGCCA-----------------------------ATGGCAATG------TCGGC---ATC--AATATCTCTGGTG-TTGTTG---TTG------------TTGAAGTTGTTGCTGCTGCTGCTGCTGCAGCTGCCGTCG------------CCGCTGTTGC--------------------------------------------C--------------------------------GCTGCTGTTGCTGCTTTTGTTGCT---------GTTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTGTTG----------------------GAGTGTCACGA-----TGTACAGCCG--------------------------------CCGCAGTTGG--CGG--CGCTG---------CA-A
droAna3	scaffold_13047:1287664-1287837 +		TTGA--------------------------------ATTCTTCTCTTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAAAA------G-TT-CTTC---------------------------------------------------------TTGGC---TTT--TTTCTTTTAATTG-TTGTTG---TAG------------TTGTTGTTATAATTGTTGCTGTTGTTGTTGTTGTTGGTGTATTGCAG-----------------------ATAA------------TTGGCATTGCTGCTACTGTT--------------------------------------GTTGTTG---------TTGTTGTTGTTGTTATTGT---TGTTATT------------------------------------------------------------------------------------------------------------------------------------------ATTATA-AT----------------------------------------------------------
droBip1	scf7180000395832:198773-198958 +		GCTT--------------------------------TTCT-------------------------------------------TGCTT------TTTTTTCTT-------------C------------------A------------------------------------------------------------------------------------TTTGGAGT--------------------------------------------------------------------------------TTTTTT--TTGTTTTTGGTGG----------------------------T-------------GGTGTTGGTGGAGATGATGGTG---------------------------------------ATGG--------------TGGTG---CC--------------------------------------ACTGCTG---------GTGATGCTTCCTGCGCTGC---CGTTT----------------------AGAGAGG----CTGCCAAAA--------------------------------------------------------------------------------AACATTTATACAAATTTC-----------GCACGGAAATACACA--CTCGCTATG---------GCTCAC--------ATAC-AC
droKik1	scf7180000302570:911826-912042 -		CGAG--------------------------------CTTCG--------------------------------CTACAGTTTTTCCTA------TTTTTATTC-------------T------------------ATCAAAGAT---TTTTCCCTCTTGTTCGA--TT-------TTT--TTTGTACTATTTTTCGTG-----GCATTGTTCAGTT------------------------------------------------------------------------------------------GG---TTT--CTGTATTTAGTTG----------------------------T----------------------------------GGGC--CGAATTGT----TTCGTAATTGTAAAATATGTTGTTATGCTTTAAC--TTGTTGTTG--------------------------------------------------------------CTGCTGC-----------------------------------------------------------------------------------------------------------------T-------------GCTGCGATGCGACAAATGTGTGTACAGTTAGCCGCGAGG----------------------------------------------------------
droFic1	scf7180000453949:19410-19626 -		CTGC--------------------------------TGCT-------------------------------------------TCTTG------TGTTGTTTAACAATAACTATTGCCGCAGGCATCCAGCGAGATTTAAT-------------------------------------AG----------TTTTTG------CCTGTCGTTGAGTTTT-ATTTGCCAGTTTTCAGC-T-GA-TTTT---------------------------------------------------------TCTTG---TTG--CTGCATTTAAGTG-------------CTGATGTTGCTGCTGCT------------AA---------------------------------------TGTTGCTGCTGTTGGTGCTGTTGCTGCTG-----------------CT--------------------------------------CCTGTTG---------CTGCTGTTGCTGTTGTTGC---TGTTGGTA---------------------------------------------------------------------------------------------------------------------------------------------TT-GC----------------------------------------------------------
droEle1	scf7180000491046:4280337-4280556 -		TCAG---------------------------------------------------------------------------ATTTTCCTA------TTTTTCTTC-------------T------------------AT-------TT------------ATTTTG--TT-------TTT--TTTCT----TTTTTCG------TCCATTGTTCAGTCAG-TTTGGCTGAAGAGCTGC-A-AC-TGCC---------------------------------------------------------TGAGG---TTT--CTGTATTTAGTTG----------------------------T----------------------------------GGGC--CGAATTGT----TTCGTAATTGTAAAATATGTTGTTATGCTTTAAC--TTGTTGTTG--------------------------------------------------------------CTGCCGC-----------------------------------------------------------------------------------------------------------------TGCAAT------GCGATGCGATGCGACAAATGTGTGTACAGTTAGCCGAG-GG----------------------------------------------------------
droRho1	scf7180000780030:70167-70382 -		TCAG---------------------------------------------------------------------------ATTTTCCTA------TTTTCCTTC-------------T------------------A-------TTTT-----------------TT------------TTT------------TTG------TCCATTGTTCAGTCAG-TTTGGCTGAAGAGCTGC-G-AC-TGCC---------------------------------------------------------TGAGG---TTT--CTGTATTTAGTTG----------------------------T----------------------------------GGGC--CGAATTGT----TTCGTAATTGTAAAATATGTTGTTATGCTTTAAC--TTGTTGTTG--------------------------------------------------------------CTGCCGC---------------------------------------------------------------------------------------------------------------------------------TGCGATGCGACAAATGTGTGTACAGTTAGCCGAG-GG----------CTGTGTG--GCATCTGCGG-------------------------AA-A
droBia1	scf7180000302422:4927405-4927578 -		TTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT----------TTTTTG------TCCATTGTTCAGTCAG-TTTGGCTGAAGAGCTGC-T-GT-TGCC---------------------------------------------------------TCGGG---TTT--CTGTATTTAGTTG----------------------------T----------------------------------GGGC--CGAATTGT----TTCGTAATTGTAAAATATGTTGTTATGCTTTAGC--TTGCTGCTG--------------------------------------------------------------CCGCTGC-------------------------------------------------------------------------------------------------------------------------------GATGCGATGCGACAAATGTGTGCACAGTTAGCCGAG-GG----------------------------------------------------------
droTak1	scf7180000414323:171307-171494 +		TTTG--------------------------------TTTT---------------------------------------------CTA------TTTTT-TT--------------------------------------------------------------CT------------AT----------TTTTTG------TCCATTGTTCAGTCAG-TTTGGCTGAAGAGCTGC-G-AT-TGCC---------------------------------------------------------TGAGG---TTT--CTGTATTTAGTTG----------------------------T----------------------------------GGGC--CGAATTGT----TTCGTAATTGTAAAATATGTTGTTATGCTTTAAC--TTGTTGTTG--------------------------------------------------------------CTGCCGC---------------------------------------------------------------------------------------------------------------------------------TGCGATGCGACAAATGTGTGTACAGTTAGCCGAG-GG----------------------------------------------------------
droEug1	scf7180000409463:1074920-1075108 +		TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATTGTTCAGTCAGTTTTGGCTGAAGAGCTGC-G-AT-TGCC---------------------------------------------------------AGAGG---TTTT-CTGTATTTAGTTG----------------------------T----------------------------------GGGC--CGAATTGT----TTCGTAATTGTAAAATATGTTGTTATGCTTTAAC--TTGTTGTTGCT-----------------------------------------GCTGCTGTTG------CTGTTGCTGTTGCTG---C---CGC-----------------------------------------------------------------------------------------------------------------TTGCGATGCGACAAATGTGTGTACAGTTAGCCGAG-GG----------------------------------------------------------
dm3	chr2L:18744835-18745066 +		TTTG--------------------------------CTTCGCATTTCGA-------ACTTCGGATTTCAGGCT--TAAGATTTTTCTA------TTTTTC--------------------------------------AGAGTT---TTTT-------------CT------------ATT------------TCG------TCCATTGTTCAGTGTG-CTTGGCTAAAGAGCTGAAG-AG-TGCC---------------------------------------------------------TGGGG---TTT--CTGTATTTAGTTG----------------------------T----------------------------------GGGC--CGAATTGT----TTCGTAATTGTAAAATATGTTGTTATGCTCTAAC--TCGTTGTTG--------------------------------------------------------------CCGCCGC---------------------------------------------------------------------------------------------------------------------------------TGCGATGCGACAAATGTGTGTACAGTTAGCCGAG-GG----------------------------------------------------------
droSim2	2l:18300453-18300691 +		TTTG--------------------------------CTTCGCATTTCGAACTTCGGATTTCGGATTTCAGACT--TAGGATTTTTCTA------TTTTTC--------------------------------------AGAGTTTTT-----------------CT------------ATT------------TCG------TCCATTGTTCAGTGTGGCTTGGCTGAAGAGCTGAAG-AG-TGCC---------------------------------------------------------CGAGG---TTT--CTGTATTTAGTTG----------------------------T----------------------------------GGGC--CGAATTGT----TTCGTAATTGTAAAATATGTTGTTATGCTCTAAC--TCGTTGTTG--------------------------------------------------------------CCGCCGC---------------------------------------------------------------------------------------------------------------------------------TGCGATGCGACAAATGTGAGTACAGTTAGCCGAG-GG----------------------------------------------------------
droSec2	scaffold_7:2366039-2366272 +		GAGCTTTG----------------------------CTTCGCATTTCGA-------ACTTCGGATTTCAGAGT--TTGGATTTTTCTA------TTTTTT--------------------------------------AGAGTTTTT-----------------CT------------ATT------------ACG------TCCATTGTTCAGTGTG-CCTGGCTGAAGAGCTGAAG-AG-TGCC---------------------------------------------------------TGAGG---TTT--CTGTATTTAGTTG----------------------------T----------------------------------GGGC--CGAATTGT----TTCGTAATTGTAAAATACGTTGTAATGCTCTAAC--TCGTTGTTG--------------------------------------------------------------CCGCCG----------------------------------------------------------------------------------------------------------------------------------TGCGATGCGACAAATGTGTGTAAAGTTAGCCGAG-GG----------------------------------------------------------
droYak3	3L:11227979-11228222 +		AATG--------------------------------GATT-------------------------------------------TTCCA------GACTGTCT-------------------------------------------------------GGCTCGG--TT-------TTT--TCGC-------------------------------------------------------------C-------------TTATTTTTGAAAAGC---------------------------------G---CAA--ATGTTTTTAGCAA----------------------------T----------------------------------GGA-----AGTACCCTTATGTGTCCCTGTTGTTTATGTTGTTGTTGTTG-----TTGTTGTTG-----------------------------------------------------------CTGCTATTGCTGTTGTTGT---TCTAACGGTTGCCAAAG-CAACAAC-AA----AAAAACTTGGCCAACAG-GGGCG--------------------------------------------------------------------GCTGAAA-----GCAAGAACAA--------------------CAAAAACATCAGGTGTGA----GAAAGCACACAA------ACA-GGC
droEre2	scaffold_4845:5531486-5531715 -		TTGG--------------------------------CTTCGGGTTTGGG-------ATTTCGGATTTCAGATT--TCAGATTTTTCTA------TTTTTC--------------------------------------ACAGTTTTT-----------------CT------------ATT------------TCG------TCCATTGTTCAGTCTG-CTTGGCTGAAGAGCCGC-G-AG-TGCC---------------------------------------------------------TGGGG---TTT--CTGTATTTAGTTG----------------------------T----------------------------------GGGC--CGAATTGT----TTCGTAATTGTAAAATATGCTGTTATGCTCTAAC--TCGTTGTTG--------------------------------------------------------------CCGCCGC---------------------------------------------------------------------------------------------------------------------------------TGCGATGCGACAAATGTGTGTACAGTTAGCCGAG-GG----------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

TTGGATTCTTTTGTTCAGCCATCAGGCTGAAGAGCTCTG----------------------------------CCAG---------ATTTTGTGTGC---------------------------------------------------------------------TTTTTTTTTTCT--TCTC-------------------------------------------------------------T-------------CTAT----------------------------------------------------------TTTACCAG----------------------------T----------------------------------GGGC--AGAATTGT----TTCGTAATTGTAAAATATGTTGTCATGTTGTAAGCATTGTTATTGCTGTT--------------------------------------GCTGTTG---------CTGTTGTTGCTGATGCTGC---TGTTAGCA------------------------------------------------------------------------------------------------------------TTGCAATGCCACAAATGTGTGTACAGTTAGCTGCG-GGG---------CAATCTG--TTCTCTGTGG----GAAGGCTCAC--------ACAC-AC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

TTTG--------------------------------TTTG-------------------------------------------T---T--------TTT--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------ATTGTTGTTGTTGTTGTTGTTGTTGTTGCC------------ATTGTCGTTGTCATTTTG---AATG--CGAATTGTCGTCGTTGTCGTTGTCATCCATGTTCTTGTTGGT----------------------------------------------------------GTTGTTGTTG------TTGTTGCTGTTGCTG---CTGCTTTC----------------------TGAATACGCAAAATGTGTAAT------------------------------------------------------------------------------------------GGCATTTCGTCAGG-CGGAGCATGAAAATGC----------GACA-------------------------AC-AC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................................................................................................TTT--T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT----------------ATTGTTGTTGTTGTT....................................................................................................................................................................................................................................................................................................................................................................................................................	21	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGT----------------------------------------------------------GTTGTTGTTG------TTGTT.....................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGCT--------------------------------CTGCG---------------------------------------------ATTTAGTGTGC---------------------------------------------------------------------TCA---------------------------------------------------------------------------------------------------TAAAATATTTGTGTTACAGATTAGTAAAATAGACA-----ATTTT----------------GTTGCTGTTGTTGTTGTTGTT---------------GCTGCTGCTGTTGCTGTTG------------------------------C--------------------------------------------T--------------------------------GTTGCTGTTGCTGTTGTTGTTGCT---------GTTGCTGT---TG-------------------CTAC-TA-------------------------------------------------------------------------------------------GTGAGCCATTA-----ATTAAAGTTT--------------------TCAGAGATTCCAGTGCAC--AT--ATG--TACGTATCCACAGT-AAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................................................................................................................................................................................................................TGCTGTTGTTGTTGTTGTT---------------GC.............................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0

droGri2

ATGT--------------------------------TTTTG---------------------------------------------TT--------TTTCTTT-------------T------------------------------------------------------------------------------------------------------------------------------------------------------GAGCTG--------------------------------------CAG--CCGCATTTAAGTTGTTGTTG---TTG------------TTGCTGTT---GTTGTTGCTGTTGTTGTAGT-------TGGC--TG--------------------------------------CTG-----------------TTGTGAGAATTTGCCGTAAATCAACCTGTTGCATGTTGGTGTTGCTGTTGTTGTTGTT------------------------GTTGTTGCCGCACACAGTTTTCGGCATCAGCCACTTGGCTTATGAAGTGCCACAGAGAGAAACAGGTTAATCGATTTTAAATCGGTTTTGATGTTGTTTTGATCGCTGCCCCTTACAACTAAATACATGTGTGTACACACACAC-AC-AC----------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGGTGTTGCTGTTGTTG.............................................................................................................................................................................................................................................	20	20	0.05	1	0	1

dp5

CTGC--------------------------------TGCCG--------------------------------CTGAA-TTTTTACCA------GTTTATTTC-------------T------------------AT-------CTTTTTT-------------CC------------CTT------------TCCTGGTGCTCCATTGTTCATT--------GCTGAAGAGCTGCCG-CGATGCC---------------------------------------------------------TGAGG---TTTTGCTGCATTTAGTTG----------------------------T----------------------------------GGGC--AGAATTGT----TTCGTAATTGTAAAATATGTTGTTATGCTTTAAC--TTGTTGCTG--------------------------------------------------------------C---------------------------------------------------------------------------------------------------------------------------------------TGCGATGCGACAAATGTGTGTACAGTTAGCTGGG-GGC---------ACATAGG--ATATCTGCGAATGA--ATG--CACAT------GC----A

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

TTGC--------------------------------CAAT-------------------------------------------T------------------------------------------------------------------------------------------------------------ATCG---------------CTGGCAA-T-----------GCCGCAGACGATGCCGATGGCGATGCCA-----------------------------ATGGCAATG------TCGGC---ATC--AATATCTCTGGTG-TTGTTG---TTG------------TTGAAGTTGTTGCTGCTGCTGCTGCTGCAGCTGCCGTCG------------CCGCTGTTGC--------------------------------------------C--------------------------------GCTGCTGTTGCTGCTTTTGTTGCT---------GTTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTGTTG----------------------GAGTGTCACGA-----TGTACAGCCG--------------------------------CCGCAGTTGG--CGG--CGCTG---------CA-A	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................................................................................................................................................................................................................................................................................................TTG------------TTGAAGTTGTTGCTGCTG........................................................................................................................................................................................................................................................................................................................................................................................	21	5	71.00	355	7	280	9	1	0	58
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTCACGA-----TGTACAGCCG--------------------------------CCG................................	24	5	46.60	233	4	211	3	0	0	15
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTCACGA-----TGTACAGCCG--------------------------------CCGC...............................	25	5	37.80	189	0	186	2	0	0	1
...................................................................................................................................................................................................................................................................................................................................................TTG------------TTGAAGTTGTTGCTGCT.........................................................................................................................................................................................................................................................................................................................................................................................	20	5	18.80	94	37	47	2	0	0	8
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTCACGA-----TGTACAGCCG--------------------------------CCGCAG.............................	27	5	16.80	84	0	80	1	0	0	3
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTCACGA-----TGTACAGCCG--------------------------------CC.................................	23	5	15.40	77	4	62	5	0	0	6
...................................................................................................................................................................................................................................................................................................................................................TTG------------TTGAAGTTGTTGCTGC..........................................................................................................................................................................................................................................................................................................................................................................................	19	5	15.20	76	7	43	14	0	0	12
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTCACGA-----TGTACAGCCG--------------------------------C..................................	22	5	14.40	72	0	61	1	1	0	9
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTCACGA-----TGTACAGCCG--------------------------------...................................	21	5	14.00	70	0	58	0	0	0	12
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTCACGA-----TGTACAGCCG--------------------------------CCGCAGT............................	28	5	12.40	62	0	58	0	0	0	4
....................................................................................................................................................................................................................TGGCAA-T-----------GCCGCAGACGATGCCGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	3	11.33	34	0	33	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------------------------------CGGCACTGTTG----------------------GAGTGTCACGA-----TG...........................................................................	25	4	10.75	43	0	43	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTG----------------------GAGTGTCACGA-----TGTACAGC.....................................................................	24	4	8.75	35	1	23	11	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTG------------TTGAAGTTGTTGCTG...........................................................................................................................................................................................................................................................................................................................................................................................	18	5	8.20	41	10	20	11	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTCACGA-----TGTACAGCCG--------------------------------CCGCA..............................	26	5	8.00	40	0	38	2	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTG----------------------GAGTGTCACGA-----TGTACAG......................................................................	23	4	7.25	29	0	25	4	0	0	0
.................................................................................................................................................................................................TCG---------------CTGGCAA-T-----------GCCGCAGACGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	5.67	17	0	15	2	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TG------------TTGAAGTTGTTGCTGCTG........................................................................................................................................................................................................................................................................................................................................................................................	20	7	5.43	38	0	37	0	0	0	1
....................................................................................................................................................................................................................TGGCAA-T-----------GCCGCAGACGATGCCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	5.00	15	0	15	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTG------------TTGAAGTTGTTGCTGCTT........................................................................................................................................................................................................................................................................................................................................................................................	21	5	5.00	25	12	10	1	0	0	2
...................................................................................................................................................................................................................................................................................................................................................TTG------------TTGAAGTTGTTGCTGCTA........................................................................................................................................................................................................................................................................................................................................................................................	21	5	5.00	25	0	24	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTG------------TTGAAGTTGTTGCTGCTGC.......................................................................................................................................................................................................................................................................................................................................................................................	22	5	4.60	23	2	15	1	0	0	5
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTCACGA-----TGTACAGCC....................................................................	20	5	4.40	22	0	16	4	0	0	2
...........................................................................................................................................................................................................................T-----------GCCGCAGACGATGCCGATGGCGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	4	4.25	17	1	15	1	0	0	0
....................................................................................................................................................................................................................TGGCAA-T-----------GCCGCAGACGATGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	3	4.00	12	0	12	0	0	0	0
..............................................................................................................................................................................................................................................................TGCCA-----------------------------ATGGCAATG------TCGGC---ATC--AATA............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	5	3.80	19	0	19	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTGTTG----------------------.............................................................................................	24	4	3.75	15	0	15	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTCG------------CCGCTGTTGC--------------------------------------------C--------------------------------................................................................................................................................................................................................................................................................	19	5	3.40	17	13	2	2	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTCACGA-----TGTACAGCCG--------------------------------CCG................................	23	5	3.40	17	0	17	0	0	0	0
...........................................................................................................................................................................................................................T-----------GCCGCAGACGATGCCGATGGCGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	4	3.25	13	0	12	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTGTTG----------------------G............................................................................................	21	4	3.25	13	0	8	5	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TGCTGCAGCTGCCGTCG------------CCGCTG.................................................................................................................................................................................................................................................................................................................................................	23	5	3.20	16	13	3	0	0	0	0
....................................................................................................................................................................................................................TGGCAA-T-----------GCCGCAGACGATGCCGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	3	3.00	9	0	9	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................TGCAGCTGCCGTCG------------CCGCTG.................................................................................................................................................................................................................................................................................................................................................	20	5	2.80	14	12	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------------GAGTGTCACGA-----TGTACAGCCG--------------------------------...................................	23	5	2.80	14	0	14	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTG----------------------GAGTGTCACGA-----TGTACAGCC....................................................................	25	4	2.75	11	0	11	0	0	0	0
........................................................................................................................................................................................................................................................TGGCGATGCCA-----------------------------ATGGCAATG------TCGGC---.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	5	2.60	13	2	11	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTCACGA-----TGTACAGCCG--------------------------------CCGC...............................	24	5	2.60	13	0	13	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-------------------CCAT-------------------------------------------------------------CGGCACTGTTG----------------------GAGTGTC......................................................................................	24	4	2.50	10	7	2	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCACGA-----TGTACAGCCG--------------------------------CCGCAGT............................	25	5	2.40	12	0	6	5	0	1	0
.................................................................................................................................................................................................................................................................................................TGGCAATG------TCGGC---ATC--AATATCTCTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................	27	5	2.40	12	0	11	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------GTTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCACT.......................................................................................................................	22	5	2.40	12	0	12	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTCG------------CCGCTGTTGC--------------------------------------------C--------------------------------G...............................................................................................................................................................................................................................................................	20	5	2.40	12	6	3	3	0	0	0
....................................................................................................................................................................................................................TGGCAA-T-----------GCCGCAGACGATGCCGATGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	3	2.33	7	0	7	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTCG------------CCGCTGTTGA--------------------------------------------.................................................................................................................................................................................................................................................................................................	18	6	2.33	14	14	0	0	0	0	0
....................................................................................................................................................................................................................TGGCAA-T-----------GCCGCAGACGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	3	2.33	7	0	6	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGTTGCTGCTTTTGTTG..........................................................................................................................................................................................................................................	20	5	2.20	11	0	9	2	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTGTTG----------------------G............................................................................................	25	4	2.00	8	0	8	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------GTTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTG......................................................................................................................	23	5	2.00	10	0	10	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGTTGCTGCTTTTGTTGCT---------G..............................................................................................................................................................................................................................	23	1	2.00	2	0	1	1	0	0	0
.......................................................................................................................................................................................................................................................................................................TG------TCGGC---ATC--AATATCTCTGGTG-TTG...............................................................................................................................................................................................................................................................................................................................................................................................................................	26	5	2.00	10	0	10	0	0	0	0
..............................................................................................................................................................................................................................................................TGCCA-----------------------------ATGGCAATG------TCGGC---ATC--AAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	5	2.00	10	0	10	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TG------TCGGC---ATC--AATATCTCTGGTG-T.................................................................................................................................................................................................................................................................................................................................................................................................................................	24	5	2.00	10	2	8	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGTTGCTGCTTTTGTTGC.........................................................................................................................................................................................................................................	21	2	2.00	4	0	3	1	0	0	0
.................................................................................................................................................................................................................................................................................................TGGCAATG------TCGGC---ATC--AATATCTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................	26	5	2.00	10	0	10	0	0	0	0
........................................................................................................................................................................................................................................................TGGCGATGCCA-----------------------------ATGGCAATG------TCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	5	2.00	10	0	10	0	0	0	0
................................................................................................................................................................................................................................................................................................................................TCTCTGGTG-TTGTTG---TTG------------TTGAAG....................................................................................................................................................................................................................................................................................................................................................................................................	24	5	2.00	10	1	9	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---------GTTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTG......................................................................................................................	24	5	1.80	9	0	9	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTGTTG----------------------GAG..........................................................................................	23	4	1.75	7	0	7	0	0	0	0
...........................................................................................................................................................................................................................T-----------GCCGCAGACGATGCCGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	4	1.75	7	2	5	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTGTTG----------------------GAGT.........................................................................................	24	4	1.75	7	1	5	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTCACGA-----TGTACAGCCG--------------------------------CCGT...............................	25	5	1.60	8	0	6	0	0	1	1
.................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTCG------------CCGCTGTTGC--------------------------------------------C--------------------------------GC..............................................................................................................................................................................................................................................................	21	5	1.60	8	0	8	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................CTGCCGTCG------------CCGCTGTTGC--------------------------------------------C--------------------------------................................................................................................................................................................................................................................................................	20	5	1.60	8	8	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TGCTGCAGCTGCCGTCG------------CCGC...................................................................................................................................................................................................................................................................................................................................................	21	5	1.60	8	3	4	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------------GAGTGTCACGA-----TGTACAGCCG--------------------------------CCG................................	26	5	1.60	8	0	8	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTTTTGTTGCT---------GTTG...........................................................................................................................................................................................................................	20	2	1.50	3	0	2	0	0	0	1
...........................................................................................................................................................................................................................T-----------GCCGCAGACGATGCCGATGGCGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	4	1.50	6	0	6	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TG------TCGGC---ATC--AATATCTCTGGTG-..................................................................................................................................................................................................................................................................................................................................................................................................................................	23	5	1.40	7	0	7	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTCG------------CCGCTGTTGC--------------------------------------------C--------------------------------GT..............................................................................................................................................................................................................................................................	21	5	1.40	7	5	2	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TG---TTG------------TTGAAGTTGTTGCTG...........................................................................................................................................................................................................................................................................................................................................................................................	20	5	1.40	7	0	6	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTCACGA-----TGTACAGC.....................................................................	19	5	1.40	7	0	7	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTCACGA-----TGTACAGCCG--------------------------------CCGCAG.............................	26	5	1.40	7	0	7	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---------GTTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCACT.......................................................................................................................	23	5	1.40	7	0	7	0	0	0	0
....................................................................................................................................................................................................................TGGCAA-T-----------GCCGCAGACGATGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	3	1.33	4	0	3	1	0	0	0
.................................................................................................................................................................................................TCG---------------CTGGCAA-T-----------GCCGCAGACGATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	1.33	4	0	4	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TTGAAGTTGTTGCTGCTGC.......................................................................................................................................................................................................................................................................................................................................................................................	19	7	1.29	9	2	6	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTG----------------------GAGTGTCACGA-----TGTACA.......................................................................	22	4	1.25	5	0	4	1	0	0	0
...........................................................................................................................................................................................................................T-----------GCCGCAGACGATGCCGATGGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	4	1.25	5	0	5	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTG----------------------GAGTGTCACGA-----TGTACAGCCG--------------------------------...................................	26	4	1.25	5	0	5	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTG----------------------GAGTGTCACGA-----TGTACAGCCG--------------------------------C..................................	27	4	1.25	5	1	3	1	0	0	0
.......................................................................................................................................................................................................................................................................................................TG------TCGGC---ATC--AATATCTCTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	5	1.20	6	0	6	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------------GAGTGTCACGA-----TGTACAGC.....................................................................	21	5	1.20	6	0	5	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TGCTGCAGCTGCCGTCG------------C......................................................................................................................................................................................................................................................................................................................................................	18	5	1.20	6	2	4	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACAGCCG--------------------------------CCGCAGTTG..........................	19	5	1.20	6	0	6	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------GTTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCAA........................................................................................................................	21	5	1.20	6	0	4	2	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTCACGA-----TGTACAGCCG--------------------------------CCGCAA.............................	27	5	1.20	6	0	6	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTCACGA-----TGTACAGCCG--------------------------------CCGCAC.............................	27	5	1.20	6	0	6	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACAGCCG--------------------------------CCGCAGTTGG--.......................	20	5	1.20	6	0	6	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TTGAAGTTGTTGCTGCTGCTG.....................................................................................................................................................................................................................................................................................................................................................................................	21	6	1.17	7	0	5	0	0	0	2
.......................................T-------------------------------------------T------------------------------------------------------------------------------------------------------------ATCG---------------CTGGCAA-T-----------GCCGCAGACGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	3	1.00	3	0	3	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................TGCAGCTGCCGTCG------------CCGCTGTT...............................................................................................................................................................................................................................................................................................................................................	22	5	1.00	5	2	3	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGTTGCTGCTTTTGTTGCT---------GT.............................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................T-----------GCCGCAGACGATGCCGATGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	4	1.00	4	0	4	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGA-----TGTACAGCCG--------------------------------CCGCAGTTG..........................	25	5	1.00	5	0	5	0	0	0	0
.....................................................................................................................................................................................................................GGCAA-T-----------GCCGCAGACGATGCCGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	3	1.00	3	0	3	0	0	0	0
...................................................................................T------------------------------------------------------------------------------------------------------------ATCG---------------CTGGCAA-T-----------GCCGCAGACGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	1.00	3	0	3	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTCACGA-----TGTACAGCCG--------------------------------...................................	20	5	1.00	5	0	5	0	0	0	0
.......................................T-------------------------------------------T------------------------------------------------------------------------------------------------------------ATCG---------------CTGGCAA-T-----------GCCGCAGACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	1.00	3	0	3	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTGTTG----------------------GA...........................................................................................	22	4	1.00	4	0	3	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACAGCCG--------------------------------CCGCAGTTGG--C......................	21	5	1.00	5	0	2	3	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TGCTGCAGCTGCCGTCG------------CC.....................................................................................................................................................................................................................................................................................................................................................	19	5	1.00	5	0	4	1	0	0	0
.................................................................................................................................................................................................TCG---------------CTGGCAA-T-----------GCCGCAGACGATGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	3	1.00	3	0	3	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------GTTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCAC........................................................................................................................	21	5	1.00	5	0	4	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTGTTG----------------------GAA..........................................................................................	23	4	1.00	4	0	4	0	0	0	0
..................................................................................................................................................................................................................................................................................................GGCAATG------TCGGC---ATC--AATATCTCTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................	26	5	1.00	5	0	5	0	0	0	0
.TGC--------------------------------CAAT-------------------------------------------T------------------------------------------------------------------------------------------------------------ATCG---------------CTGGCAA-T-----------GCCGCAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	3	1.00	3	0	3	0	0	0	0
...........................................................................................................................................................................................................................T-----------GCCGCAGACGATGCCGATGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	4	1.00	4	0	4	0	0	0	0
..............................................................................................................................................................................................................................................................TGCCA-----------------------------ATGGCAATG------TCGGC---.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	5	1.00	5	4	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGTTGCTGCTTTTGTTGCT---------...............................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCTGCTTTTGTTGCT---------GTTG...........................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTG------------TTGAAGTTGTTGCTGCA.........................................................................................................................................................................................................................................................................................................................................................................................	20	6	0.83	5	0	5	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---------GTTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCAC........................................................................................................................	22	5	0.80	4	0	4	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TTG---TTG------------TTGAAGTTGTTGCTGC..........................................................................................................................................................................................................................................................................................................................................................................................	22	5	0.80	4	0	3	0	0	0	1
........................................................................................................................................................................................................................................................TGGCGATGCCA-----------------------------ATGGCAATG------TCGGC---A....................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	5	0.80	4	0	4	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTCG------------CCGCTGTTGC--------------------------------------------C--------------------------------T...............................................................................................................................................................................................................................................................	20	5	0.80	4	4	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------------GAGTGTCACGA-----TGTACAGCC....................................................................	22	5	0.80	4	0	3	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TGCTGCAGCTGCCGTCG------------CCG....................................................................................................................................................................................................................................................................................................................................................	20	5	0.80	4	1	3	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTCACGA-----TGTACAGCCG--------------------------------CC.................................	22	5	0.80	4	0	4	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTCACGA-----TGTACAGCCG--------------------------------CCGCA..............................	25	5	0.80	4	0	4	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGA-----TGTACAGCCG--------------------------------CCGCAGT............................	23	5	0.80	4	0	3	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTCACGA-----TGTACAGCCG--------------------------------CCA................................	24	5	0.80	4	0	4	0	0	0	0
..............................................................................................................................................................................................................................................................TGCCA-----------------------------ATGGCAATG------TCGGC---AT...................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.80	4	2	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------GTTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGC..........................................................................................................................	19	5	0.80	4	0	3	1	0	0	0
.....................................................................................................................................................................................................................................................................................................AATG------TCGGC---ATC--AATATCTCTGGTG-T.................................................................................................................................................................................................................................................................................................................................................................................................................................	26	5	0.80	4	4	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TG---TTG------------TTGAAGTTGTTGCTGC..........................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.80	4	0	2	0	0	0	2
......................................................................................................................................................................................................................................................................................................................................................................................................TCG------------CCGCTGTTGC--------------------------------------------C--------------------------------GCTGC...........................................................................................................................................................................................................................................................	19	5	0.80	4	2	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-------------------CCAT-------------------------------------------------------------CGGCACTGTTG----------------------GAGTGT.......................................................................................	23	4	0.75	3	0	3	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTGTTG----------------------.............................................................................................	20	4	0.75	3	0	3	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-------------------CCAT-------------------------------------------------------------CGGCACTGTTG----------------------GAG..........................................................................................	20	4	0.75	3	0	3	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-------------------CCAT-------------------------------------------------------------CGGCACTGTTG----------------------GAGTGTCA.....................................................................................	25	4	0.75	3	0	3	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTG----------------------GAGTGTCACGA-----TGTAC........................................................................	21	4	0.75	3	0	3	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TTGAAGTTGTTGCTGCTG........................................................................................................................................................................................................................................................................................................................................................................................	18	8	0.75	6	1	5	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................TCG------------CCGCTGTTGC--------------------------------------------C--------------------------------GCTG............................................................................................................................................................................................................................................................	18	6	0.67	4	3	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGCTTTTGTTGCT---------GTT............................................................................................................................................................................................................................	20	3	0.67	2	0	1	1	0	0	0
.TGC--------------------------------CAAT-------------------------------------------T------------------------------------------------------------------------------------------------------------ATCG---------------CTGGCAA-T-----------GCCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	3	0.67	2	0	2	0	0	0	0
...................................................................................................................................................................................................................CTGGCAA-T-----------GCCGCAGACGATGCCGATG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	3	0.67	2	0	2	0	0	0	0
....................................................................................................................................................................................................................TGGCAA-T-----------GCCGCAGACGATGCCGATGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	3	0.67	2	0	2	0	0	0	0
...................................................................................T------------------------------------------------------------------------------------------------------------ATCG---------------CTGGCAA-T-----------GCCGCAGACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	3	0.67	2	0	2	0	0	0	0
.................................................................................................................................................................................................TCG---------------CTGGCAA-T-----------GCCGCAGACGATGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	3	0.67	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTCG------------CCGCTGTTGC--------------------------------------------A--------------------------------................................................................................................................................................................................................................................................................	19	8	0.63	5	5	0	0	0	0	0
..............................................................................................................................................................................................................................................................TGCCA-----------------------------ATGGCAATG------TCGGC---ATC--................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	5	0.60	3	2	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCACGA-----TGTACAGCCG--------------------------------CCGCAGTT...........................	26	5	0.60	3	0	3	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTG------------TTGAAGTTGTTGCTGCTGCTGCTGC.................................................................................................................................................................................................................................................................................................................................................................................	28	5	0.60	3	2	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------GTTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGG...........................................................................................................................	18	5	0.60	3	0	3	0	0	0	0
.................................................................................................................................................................................................................................................................................................TGGCAATG------TCGGC---ATC--AATATCTCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	25	5	0.60	3	0	2	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTCACGA-----TGTACAG......................................................................	18	5	0.60	3	0	3	0	0	0	0
.................................................................................................................................................................................................................................................................................................TGGCAATG------TCGGC---ATC--AATATCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	5	0.60	3	0	3	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTCG------------CCGCTGTTGC--------------------------------------------C--------------------------------GCT.............................................................................................................................................................................................................................................................	22	5	0.60	3	1	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TG------TCGGC---ATC--AATATCTCTGGTG-TT................................................................................................................................................................................................................................................................................................................................................................................................................................	25	5	0.60	3	0	3	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACGA-----TGTACAGCCG--------------------------------CCGCAGTTGG--.......................	26	5	0.60	3	0	3	0	0	0	0
.........................................................................................................................................................................................................................................................GGCGATGCCA-----------------------------ATGGCAATG------TCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	5	0.60	3	0	3	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTCACGA-----TGTACAGCCG--------------------------------CCT................................	24	5	0.60	3	0	2	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................TGGTG-TTGTTG---TTG------------TTGAAGTTG.................................................................................................................................................................................................................................................................................................................................................................................................	23	5	0.60	3	0	0	0	0	0	3
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTCACGA-----TGTACAGCCG--------------------------------C..................................	21	5	0.60	3	0	3	0	0	0	0
................................................................................................................................................................................................................................................................................................................................TCTCTGGTG-TTGTTG---TTG------------T.........................................................................................................................................................................................................................................................................................................................................................................................................	19	5	0.60	3	0	3	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---------GTTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGC..........................................................................................................................	20	5	0.60	3	0	2	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................TGCAGCTGCCGTCG------------CCGCTGTTG..............................................................................................................................................................................................................................................................................................................................................	23	5	0.60	3	0	3	0	0	0	0
.....................................................................................................................................................................................................................................................................................................AATG------TCGGC---ATC--AATATCTCTGGTG-..................................................................................................................................................................................................................................................................................................................................................................................................................................	25	5	0.60	3	3	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCACGA-----TGTACAGCCG--------------------------------CCGCAGTTG..........................	27	5	0.60	3	1	2	0	0	0	0
........................................................................................................................................................................................................................................................TGGCGATGCCA-----------------------------ATGGCAATG------TCGGC---AT...................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	5	0.60	3	0	3	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTCACGA-----TGTACAGCCG--------------------------------CCC................................	24	5	0.60	3	0	3	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG----------------------GAGTGTCACGA-----TGTACAGC.....................................................................	22	5	0.60	3	0	2	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TGCTGCAGCTGCCGTCG------------CCGCT..................................................................................................................................................................................................................................................................................................................................................	22	5	0.60	3	1	1	1	0	0	0
.......................................................................................................................................................................................................................................................................................................TG------TCGGC---ATC--AATATCTCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.60	3	0	3	0	0	0	0
..............................................................................................................................................................................................................................................................TGCCA-----------------------------ATGGCAATG------TCGGC---ATC--AA..............................................................................................................................................................................................................................................................................................................................................................................................................................................	24	5	0.60	3	0	3	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTG------------TTGAAGTTGTTGCTGCTGCTG.....................................................................................................................................................................................................................................................................................................................................................................................	24	5	0.60	3	0	3	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGCCG--------------------------------CCGCAGTTGG--CGG--CGC...............	24	5	0.60	3	0	3	0	0	0	0
........................................................................................................................................................................................................................................................TGGCGATGCCA-----------------------------ATGGCAATG------TCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	5	0.60	3	0	3	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGTTG----------------------GAGTGTCACGA-----TGTACAG......................................................................	26	4	0.50	2	0	2	0	0	0	0
...........................................................................................................................................................................................................................T-----------GCCGCAGACGATGCCGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	4	0.50	2	0	1	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------------------------------------------CGGCACTGTTG----------------------GAGTGTCACGA-----TGT..........................................................................	26	4	0.50	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTG------------TTGAAGTTGTTGCTGT..........................................................................................................................................................................................................................................................................................................................................................................................	19	18	0.50	9	0	6	2	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTGTTG----------------------GAG..........................................................................................	26	4	0.50	2	0	2	0	0	0	0
.......................................................................................................................................................................................................................................GCCGCAGACGATGCCGATGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	4	0.50	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTGTTG----------------------G............................................................................................	22	4	0.50	2	0	1	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGCTGCTTTTGTTGC.........................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---TG-------------------CCAT-------------------------------------------------------------CGGCACTGTTG----------------------GA...........................................................................................	21	4	0.50	2	0	2	0	0	0	0
...........................................................................................................................................................................................................................T-----------GCCGCAGACGATGCCGATGGCGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	4	0.50	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTG----------------------GAGTGTCACGA-----TGTACAGC.....................................................................	23	4	0.50	2	0	2	0	0	0	0
......................................................................................................................................................................................................................GCAA-T-----------GCCGCAGACGATGCCGATGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	4	0.50	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCTGCTTTTGTTGCT---------GTT............................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGCTGCTTTTGTTGCT---------GT.............................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTG----------------------GAGTGTCACGA-----TGTACAGCCA--------------------------------...................................	26	4	0.50	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGTTG----------------------GAGTGTCACGA-----TGTACAGC.....................................................................	27	4	0.50	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTG----------------------GAGTGTCACGA-----TGTACAG......................................................................	24	4	0.50	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGCTTTTGTTGCT---------G..............................................................................................................................................................................................................................	18	6	0.50	3	3	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCACTGTTG----------------------GAGTGTCACGA-----TG...........................................................................	24	4	0.50	2	0	2	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTGTTG----------------------.............................................................................................	23	4	0.50	2	0	2	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TG------------TTGAAGTTGTTGCTGCT.........................................................................................................................................................................................................................................................................................................................................................................................	19	7	0.43	3	1	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................G------------TTGAAGTTGTTGCTGCTG........................................................................................................................................................................................................................................................................................................................................................................................	19	7	0.43	3	0	3	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TG------------TTGAAGTTGTTGCTGC..........................................................................................................................................................................................................................................................................................................................................................................................	18	7	0.43	3	0	3	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGTCACGA-----TGTACAGCCG--------------------------------CCGCAGA............................	28	5	0.40	2	1	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTGTT....................................................................................................................	22	5	0.40	2	0	2	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TTG---TTG------------TTGAAGTTGTTGCTG...........................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.40	2	0	2	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................G---TTG------------TTGAAGTTGTTGCTGCTG........................................................................................................................................................................................................................................................................................................................................................................................	22	5	0.40	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................TGGCAATG------TCGGC---ATC--AATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.40	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................TGCTGCTGCAGCTGCCGTCG------------.......................................................................................................................................................................................................................................................................................................................................................	20	5	0.40	2	0	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................TCTCTGGTG-TTGTTG---TTG------------TTG.......................................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.40	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---------GTTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCAA........................................................................................................................	22	5	0.40	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCACGA-----TGTACAGCCG--------------------------------CCG................................	21	5	0.40	2	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------------GAGTGTCACGA-----TGTACAGCCG--------------------------------C..................................	24	5	0.40	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................TGGCAATG------TCGGC---ATC--AATA............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.40	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................TGCCGTCG------------CCGCTGTTGC--------------------------------------------C--------------------------------GCTG............................................................................................................................................................................................................................................................	23	5	0.40	2	0	1	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------------GAGTGTCACGA-----TGTACAGCCG--------------------------------A..................................	24	5	0.40	2	0	2	0	0	0	0
..............................................................................................................................................................................................................................................................TGCCA-----------------------------ATGGCAATG------TCGGC---ATC--AAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	5	0.40	2	0	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................TCTCTGGTG-TTGTTG---TTG------------..........................................................................................................................................................................................................................................................................................................................................................................................................	18	5	0.40	2	0	1	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT---------GTTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCAC........................................................................................................................	24	5	0.40	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTG------------TTGAAGTTGTTGCTGA..........................................................................................................................................................................................................................................................................................................................................................................................	19	5	0.40	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGCCG--------------------------------CCGCAGTTGG--CGG--CGCTG---------....	26	5	0.40	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------GTTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTGTT....................................................................................................................	25	5	0.40	2	0	2	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTGTT....................................................................................................................	23	5	0.40	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTG------------TTGAAGTTGTTGCTGCTC........................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.40	2	0	0	0	0	0	2
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCACGA-----TGTACAGCCG--------------------------------CCGCAG.............................	24	5	0.40	2	0	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................TCTCTGGTG-TTGTTG---TTG------------TTGAAGTTG.................................................................................................................................................................................................................................................................................................................................................................................................	27	5	0.40	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---------GTTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTGTT....................................................................................................................	26	5	0.40	2	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------GAGTGTCACGA-----TGTACAGC.....................................................................	20	5	0.40	2	0	1	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTG......................................................................................................................	21	5	0.40	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTG------------TTGAAGTTGTTGCTGCTGCT......................................................................................................................................................................................................................................................................................................................................................................................	23	5	0.40	2	0	1	0	0	0	1
..............................................................................................................................................................................................................................................................TGCCA-----------------------------ATGGCAATG------TCGGC---ATC--AATATCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................	29	5	0.40	2	0	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................TCTCTGGTG-TTGTTG---TTG------------TTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................	23	5	0.40	2	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------------GAGTGTCACGA-----TGTACAG......................................................................	20	5	0.40	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---------GTTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTGT.....................................................................................................................	25	5	0.40	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---------GTTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCA.........................................................................................................................	21	5	0.40	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTGTTA----------------------.............................................................................................	20	5	0.40	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG----------------------GAGTGTCACGA-----TGTACAGCCG--------------------------------...................................	24	5	0.40	2	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TGCTGCAGCTGCCGTCG------------CCGCTGTTG..............................................................................................................................................................................................................................................................................................................................................	26	5	0.40	2	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................................TC--AATATCTCTGGTG-TTGTTG---.........................................................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.40	2	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------GAGTGTCACGA-----TGTACAGCCG--------------------------------...................................	22	5	0.40	2	0	2	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TTG---TTG------------TTGAAGTTGTTGC.............................................................................................................................................................................................................................................................................................................................................................................................	19	5	0.40	2	0	1	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----------------------GAGTGTCACGA-----TGTACAGCCG--------------------------------CC.................................	25	5	0.40	2	0	2	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TG---TTG------------TTGAAGTTGTTGCT............................................................................................................................................................................................................................................................................................................................................................................................	19	5	0.40	2	0	1	0	0	0	1
.......................................................................................................................................................................................................................................................................................................TG------TCGGC---ATC--AATATCTCTGGTG-TTA...............................................................................................................................................................................................................................................................................................................................................................................................................................	26	5	0.40	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................GGCAATG------TCGGC---ATC--AATATCTCTGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................	27	5	0.40	2	0	2	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTTGCTGCTTTTGTTG..........................................................................................................................................................................................................................................	19	5	0.40	2	0	2	0	0	0	0
...............................................................................................................................................................................................................................................................................................................TCGGC---ATC--AATATCTCTGGTG-TTGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................	26	5	0.40	2	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TGCTGCAGCTGCCGTCG------------CCGCTGTT...............................................................................................................................................................................................................................................................................................................................................	25	5	0.40	2	0	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCT---------GTTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGG...........................................................................................................................	21	5	0.40	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTGTT....................................................................................................................	20	5	0.40	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGC---TG-------------------CCAT-------------------------------------------------------------CGGCACTG......................................................................................................................	20	5	0.40	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTG------------TTGAAGTTGTTGCTGCTGT.......................................................................................................................................................................................................................................................................................................................................................................................	22	8	0.38	3	0	1	0	0	0	2
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTGCT---------GTTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGG...........................................................................................................................	25	3	0.33	1	0	1	0	0	0	0
.......................................T-------------------------------------------T------------------------------------------------------------------------------------------------------------ATCG---------------CTGGCAA-T-----------GCCGCAGACGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	3	0.33	1	0	1	0	0	0	0
....................................................................................................................................................................................................................TGGCAA-T-----------GCCGCAGACGATGCCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................GGCAA-T-----------GCCGCAGACGATGCCGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0
....................................................................................................................................................................................................................TGGCAA-T-----------GCCGCAGACGATGCCGATGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	3	0.33	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTG------------TTGAAGTTGTTGCTGCC.........................................................................................................................................................................................................................................................................................................................................................................................	20	6	0.33	2	1	0	0	0	0	1
....................................................................................................................................................................................................................TGGCAA-T-----------GCCGCAGACGATGCCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TTG------------TTGAAGTTGTTGCTGCG.........................................................................................................................................................................................................................................................................................................................................................................................	20	6	0.33	2	2	0	0	0	0	0
..................................................................................................................................................................................................CG---------------CTGGCAA-T-----------GCCGCAGACGATGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTGCTGCTTTTGTTGC.........................................................................................................................................................................................................................................	19	3	0.33	1	0	1	0	0	0	0
..................................................................................................................................................................................................CG---------------CTGGCAA-T-----------GCCGCAGACGATGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0
...................................................................................................................................................................................................G---------------CTGGCAA-T-----------GCCGCAGACGATGCCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0
.................................................................................................................................................................................................TCG---------------CTGGCAA-T-----------GCCGCAGACGAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0
.................................................................................................................................................................................................TCG---------------CTGGCAA-T-----------GCCGCAGACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0
....................................................................................................................................................................................................................TGGCAA-T-----------GCCGCAGACGATGCCGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TG------------TTGAAGTTGTTGCTGCTGC.......................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.33	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................GGCAA-T-----------GCCGCAGACGATGCCGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0
...................................................................................................................................................................................................G---------------CTGGCAA-T-----------GCCGCAGACGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0
.......................................T-------------------------------------------T------------------------------------------------------------------------------------------------------------ATCG---------------CTGGCAA-T-----------GCCGCAGACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0
....................................CAAT-------------------------------------------T------------------------------------------------------------------------------------------------------------ATCG---------------CTGGCAA-T-----------GCCGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0
...................................................................................T------------------------------------------------------------------------------------------------------------ATCG---------------CTGGCAA-T-----------GCCGCAGACGATG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0
....................................................................................................................................................................................................................TGGCAA-T-----------GCCGCAGACGATGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................GGCAA-T-----------GCCGCAGACGATGCCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCT---------GTTGTTGC---TG-------------------CCAT-------------------------------------------------------------CGG...........................................................................................................................	22	3	0.33	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTTTGTTGCT---------GTTGTTG........................................................................................................................................................................................................................	20	3	0.33	1	0	1	0	0	0	0
.................................................................................................................................................................................................TCG---------------CTGGCAA-T-----------GCCGCAGACGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0
.......................................T-------------------------------------------T------------------------------------------------------------------------------------------------------------ATCG---------------CTGGCAA-T-----------GCCGCAGACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0
....................................................................................................................................................................................................................TGGCAA-T-----------GCCGCAGACGATGCCGATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0

droAna3

TTGA--------------------------------ATTCTTCTCTTAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAAAA------G-TT-CTTC---------------------------------------------------------TTGGC---TTT--TTTCTTTTAATTG-TTGTTG---TAG------------TTGTTGTTATAATTGTTGCTGTTGTTGTTGTTGTTGGTGTATTGCAG-----------------------ATAA------------TTGGCATTGCTGCTACTGTT--------------------------------------GTTGTTG---------TTGTTGTTGTTGTTATTGT---TGTTATT------------------------------------------------------------------------------------------------------------------------------------------ATTATA-AT----------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................................................................................................................................................................................................................................................................................TGCTGTTGTTGTTGTTGTTG......................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT--------------------------------------GTTGTTG---------TTGTTGTTG.................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTT--------------------------------------GTTGTTG---------TTGTTGTT..................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0

droBip1

GCTT--------------------------------TTCT-------------------------------------------TGCTT------TTTTTTCTT-------------C------------------A------------------------------------------------------------------------------------TTTGGAGT--------------------------------------------------------------------------------TTTTTT--TTGTTTTTGGTGG----------------------------T-------------GGTGTTGGTGGAGATGATGGTG---------------------------------------ATGG--------------TGGTG---CC--------------------------------------ACTGCTG---------GTGATGCTTCCTGCGCTGC---CGTTT----------------------AGAGAGG----CTGCCAAAA--------------------------------------------------------------------------------AACATTTATACAAATTTC-----------GCACGGAAATACACA--CTCGCTATG---------GCTCAC--------ATAC-AC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGAG--------------------------------CTTCG--------------------------------CTACAGTTTTTCCTA------TTTTTATTC-------------T------------------ATCAAAGAT---TTTTCCCTCTTGTTCGA--TT-------TTT--TTTGTACTATTTTTCGTG-----GCATTGTTCAGTT------------------------------------------------------------------------------------------GG---TTT--CTGTATTTAGTTG----------------------------T----------------------------------GGGC--CGAATTGT----TTCGTAATTGTAAAATATGTTGTTATGCTTTAAC--TTGTTGTTG--------------------------------------------------------------CTGCTGC-----------------------------------------------------------------------------------------------------------------T-------------GCTGCGATGCGACAAATGTGTGTACAGTTAGCCGCGAGG----------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CTGC--------------------------------TGCT-------------------------------------------TCTTG------TGTTGTTTAACAATAACTATTGCCGCAGGCATCCAGCGAGATTTAAT-------------------------------------AG----------TTTTTG------CCTGTCGTTGAGTTTT-ATTTGCCAGTTTTCAGC-T-GA-TTTT---------------------------------------------------------TCTTG---TTG--CTGCATTTAAGTG-------------CTGATGTTGCTGCTGCT------------AA---------------------------------------TGTTGCTGCTGTTGGTGCTGTTGCTGCTG-----------------CT--------------------------------------CCTGTTG---------CTGCTGTTGCTGTTGTTGC---TGTTGGTA---------------------------------------------------------------------------------------------------------------------------------------------TT-GC----------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCAG---------------------------------------------------------------------------ATTTTCCTA------TTTTTCTTC-------------T------------------AT-------TT------------ATTTTG--TT-------TTT--TTTCT----TTTTTCG------TCCATTGTTCAGTCAG-TTTGGCTGAAGAGCTGC-A-AC-TGCC---------------------------------------------------------TGAGG---TTT--CTGTATTTAGTTG----------------------------T----------------------------------GGGC--CGAATTGT----TTCGTAATTGTAAAATATGTTGTTATGCTTTAAC--TTGTTGTTG--------------------------------------------------------------CTGCCGC-----------------------------------------------------------------------------------------------------------------TGCAAT------GCGATGCGATGCGACAAATGTGTGTACAGTTAGCCGAG-GG----------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCAG---------------------------------------------------------------------------ATTTTCCTA------TTTTCCTTC-------------T------------------A-------TTTT-----------------TT------------TTT------------TTG------TCCATTGTTCAGTCAG-TTTGGCTGAAGAGCTGC-G-AC-TGCC---------------------------------------------------------TGAGG---TTT--CTGTATTTAGTTG----------------------------T----------------------------------GGGC--CGAATTGT----TTCGTAATTGTAAAATATGTTGTTATGCTTTAAC--TTGTTGTTG--------------------------------------------------------------CTGCCGC---------------------------------------------------------------------------------------------------------------------------------TGCGATGCGACAAATGTGTGTACAGTTAGCCGAG-GG----------CTGTGTG--GCATCTGCGG-------------------------AA-A	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TTCT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT----------TTTTTG------TCCATTGTTCAGTCAG-TTTGGCTGAAGAGCTGC-T-GT-TGCC---------------------------------------------------------TCGGG---TTT--CTGTATTTAGTTG----------------------------T----------------------------------GGGC--CGAATTGT----TTCGTAATTGTAAAATATGTTGTTATGCTTTAGC--TTGCTGCTG--------------------------------------------------------------CCGCTGC-------------------------------------------------------------------------------------------------------------------------------GATGCGATGCGACAAATGTGTGCACAGTTAGCCGAG-GG----------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTTG--------------------------------TTTT---------------------------------------------CTA------TTTTT-TT--------------------------------------------------------------CT------------AT----------TTTTTG------TCCATTGTTCAGTCAG-TTTGGCTGAAGAGCTGC-G-AT-TGCC---------------------------------------------------------TGAGG---TTT--CTGTATTTAGTTG----------------------------T----------------------------------GGGC--CGAATTGT----TTCGTAATTGTAAAATATGTTGTTATGCTTTAAC--TTGTTGTTG--------------------------------------------------------------CTGCCGC---------------------------------------------------------------------------------------------------------------------------------TGCGATGCGACAAATGTGTGTACAGTTAGCCGAG-GG----------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATTGTTCAGTCAGTTTTGGCTGAAGAGCTGC-G-AT-TGCC---------------------------------------------------------AGAGG---TTTT-CTGTATTTAGTTG----------------------------T----------------------------------GGGC--CGAATTGT----TTCGTAATTGTAAAATATGTTGTTATGCTTTAAC--TTGTTGTTGCT-----------------------------------------GCTGCTGTTG------CTGTTGCTGTTGCTG---C---CGC-----------------------------------------------------------------------------------------------------------------TTGCGATGCGACAAATGTGTGTACAGTTAGCCGAG-GG----------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTTG--------------------------------CTTCGCATTTCGA-------ACTTCGGATTTCAGGCT--TAAGATTTTTCTA------TTTTTC--------------------------------------AGAGTT---TTTT-------------CT------------ATT------------TCG------TCCATTGTTCAGTGTG-CTTGGCTAAAGAGCTGAAG-AG-TGCC---------------------------------------------------------TGGGG---TTT--CTGTATTTAGTTG----------------------------T----------------------------------GGGC--CGAATTGT----TTCGTAATTGTAAAATATGTTGTTATGCTCTAAC--TCGTTGTTG--------------------------------------------------------------CCGCCGC---------------------------------------------------------------------------------------------------------------------------------TGCGATGCGACAAATGTGTGTACAGTTAGCCGAG-GG----------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTTGTTATGCTCTAA.................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGACAAATGTGTGTACAGT.....................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................ACTTCGGATTTCAGGCT--TAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTAAC--TCGTTGTTG--------------------------------------------------------------CCGC...................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TTTG--------------------------------CTTCGCATTTCGAACTTCGGATTTCGGATTTCAGACT--TAGGATTTTTCTA------TTTTTC--------------------------------------AGAGTTTTT-----------------CT------------ATT------------TCG------TCCATTGTTCAGTGTGGCTTGGCTGAAGAGCTGAAG-AG-TGCC---------------------------------------------------------CGAGG---TTT--CTGTATTTAGTTG----------------------------T----------------------------------GGGC--CGAATTGT----TTCGTAATTGTAAAATATGTTGTTATGCTCTAAC--TCGTTGTTG--------------------------------------------------------------CCGCCGC---------------------------------------------------------------------------------------------------------------------------------TGCGATGCGACAAATGTGAGTACAGTTAGCCGAG-GG----------------------------------------------------------

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

GAGCTTTG----------------------------CTTCGCATTTCGA-------ACTTCGGATTTCAGAGT--TTGGATTTTTCTA------TTTTTT--------------------------------------AGAGTTTTT-----------------CT------------ATT------------ACG------TCCATTGTTCAGTGTG-CCTGGCTGAAGAGCTGAAG-AG-TGCC---------------------------------------------------------TGAGG---TTT--CTGTATTTAGTTG----------------------------T----------------------------------GGGC--CGAATTGT----TTCGTAATTGTAAAATACGTTGTAATGCTCTAAC--TCGTTGTTG--------------------------------------------------------------CCGCCG----------------------------------------------------------------------------------------------------------------------------------TGCGATGCGACAAATGTGTGTAAAGTTAGCCGAG-GG----------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

AATG--------------------------------GATT-------------------------------------------TTCCA------GACTGTCT-------------------------------------------------------GGCTCGG--TT-------TTT--TCGC-------------------------------------------------------------C-------------TTATTTTTGAAAAGC---------------------------------G---CAA--ATGTTTTTAGCAA----------------------------T----------------------------------GGA-----AGTACCCTTATGTGTCCCTGTTGTTTATGTTGTTGTTGTTG-----TTGTTGTTG-----------------------------------------------------------CTGCTATTGCTGTTGTTGT---TCTAACGGTTGCCAAAG-CAACAAC-AA----AAAAACTTGGCCAACAG-GGGCG--------------------------------------------------------------------GCTGAAA-----GCAAGAACAA--------------------CAAAAACATCAGGTGTGA----GAAAGCACACAA------ACA-GGC

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

TTGG--------------------------------CTTCGGGTTTGGG-------ATTTCGGATTTCAGATT--TCAGATTTTTCTA------TTTTTC--------------------------------------ACAGTTTTT-----------------CT------------ATT------------TCG------TCCATTGTTCAGTCTG-CTTGGCTGAAGAGCCGC-G-AG-TGCC---------------------------------------------------------TGGGG---TTT--CTGTATTTAGTTG----------------------------T----------------------------------GGGC--CGAATTGT----TTCGTAATTGTAAAATATGCTGTTATGCTCTAAC--TCGTTGTTG--------------------------------------------------------------CCGCCGC---------------------------------------------------------------------------------------------------------------------------------TGCGATGCGACAAATGTGTGTACAGTTAGCCGAG-GG----------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dwi_1355

scf2_1100000004521:11144301-11144451 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads